Citrus Sinensis ID: 025715
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | 2.2.26 [Sep-21-2011] | |||||||
| Q54VA8 | 270 | Putative tRNA (cytidine(3 | yes | no | 0.875 | 0.807 | 0.644 | 1e-81 | |
| Q9UET6 | 329 | Putative tRNA (cytidine(3 | yes | no | 0.883 | 0.668 | 0.634 | 2e-80 | |
| Q22031 | 337 | Putative tRNA (cytidine(3 | yes | no | 0.835 | 0.617 | 0.649 | 7e-80 | |
| O36015 | 285 | Putative tRNA (cytidine(3 | yes | no | 0.863 | 0.754 | 0.631 | 1e-76 | |
| Q9VEP1 | 302 | Putative tRNA (cytidine(3 | yes | no | 0.907 | 0.748 | 0.582 | 5e-73 | |
| Q9VDD9 | 320 | Putative tRNA (cytidine(3 | no | no | 0.919 | 0.715 | 0.553 | 9e-69 | |
| P38238 | 310 | tRNA (cytidine(32)/guanos | yes | no | 0.859 | 0.690 | 0.568 | 1e-66 | |
| Q5BH88 | 806 | AdoMet-dependent rRNA met | no | no | 0.791 | 0.244 | 0.430 | 1e-39 | |
| Q4WVH3 | 795 | AdoMet-dependent rRNA met | no | no | 0.791 | 0.247 | 0.406 | 1e-38 | |
| Q52C47 | 865 | AdoMet-dependent rRNA met | N/A | no | 0.791 | 0.227 | 0.411 | 4e-38 |
| >sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/225 (64%), Positives = 177/225 (78%), Gaps = 7/225 (3%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R++Y K PD + IVA+DLQ MAP++GV+Q++GDIT T++ +I HFDG A
Sbjct: 61 RRIYGDGK-DPDVK------IVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DL++ DGAPDVTGLHD+D + QSQLIL+ L + TH LK GG F+AK+F+G D SL+Y Q+
Sbjct: 114 DLIISDGAPDVTGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQM 173
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLE 225
KLFF V+F KP SSR SS+E F +C NY PP +NPK + LE
Sbjct: 174 KLFFEHVSFVKPSSSRESSLENFILCRNYQPPLNYNPKIIDPALE 218
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Probable methyltransferase. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Homo sapiens GN=FTSJ1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/230 (63%), Positives = 178/230 (77%), Gaps = 10/230 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +LLY QL
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQL 170
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSP 230
++FF V AKP+SSRNSSIEAFAVC+ Y PPEGF P LL+ P
Sbjct: 171 QVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDP 220
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Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 141/217 (64%), Positives = 169/217 (77%), Gaps = 9/217 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK SRDKRDIYYR AKE WRARSAFKL+QID+EF I +GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY E IVAIDLQPMAPI GVIQ+QGDIT+ TA VI+HF G K+
Sbjct: 61 KRLY---------EEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKS 111
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
D+V+CDGAPDVTG+H +DEF+Q++LILA + +HVLKEGG F+AKIFR +++SLLY Q+
Sbjct: 112 DIVICDGAPDVTGIHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQM 171
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNP 217
K +F V AKP+SSR SS EAF +C +Y PPEGF P
Sbjct: 172 KKYFKKVYLAKPRSSRQSSCEAFVLCLDYSPPEGFVP 208
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Probable methyltransferase. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F10.03c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/217 (63%), Positives = 170/217 (78%), Gaps = 2/217 (0%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FEG KRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+L S + E P+IVA+DLQPMAPI+GV +Q DIT+ T +++ HF A
Sbjct: 61 RELLKNIDTSIAADEK--PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPA 118
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVV DGAPDVTGLHD+DE++Q+Q++LA + VLK GGKF+AKIFRG+D SLLY QL
Sbjct: 119 DLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQL 178
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNP 217
+L F V+ AKP+SSR SSIE+F VCE++ PP F P
Sbjct: 179 RLMFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQP 215
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1 OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (700), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 171/237 (72%), Gaps = 11/237 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK S+DKRDIYYR+AK+EGWRARSAFKLL +DE + I GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC-K 119
RKLY + E I+A+DLQ MAPI G++Q+QGDIT TAE +I HF G K
Sbjct: 61 RKLYDTCETDD---EKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEK 117
Query: 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179
A LVVCDGAPDVTG+H+MDE++Q QL++A L++ T VL+ GG F+AKIF+G TSLL Q
Sbjct: 118 AQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQ 177
Query: 180 LKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK-------DLHRLLEKVGS 229
+++FF KP SSR SSIEAF VC ++ PEG+ P+ D+ L +K GS
Sbjct: 178 MQIFFKKFDIYKPPSSRPSSIEAFVVCSDFCLPEGYIPQVINPARDDIRLLAQKTGS 234
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Probable methyltransferase. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2 OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 129/233 (55%), Positives = 163/233 (69%), Gaps = 4/233 (1%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRDI+YR AKE+GWRARSAFKLLQ DE F + EG+ R VDLCAAPGSWSQVL+
Sbjct: 1 MGRTSKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLA 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY P L P+ RE I+A+DLQ MAPIEGV Q++ DI+ TAE +I F G KA
Sbjct: 61 KRLYEP--LPPEEREK--VKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKA 116
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
+VV DGAPD TG+HD D +VQ +L+L+ L++ T +L+EGG F++KI+R TS LY QL
Sbjct: 117 QIVVSDGAPDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQL 176
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 233
K FF V KP +SRNSSIEAF V + P+G+ P +L W G
Sbjct: 177 KRFFKNVCVFKPSASRNSSIEAFVVAREFCLPDGYKPCNLTTEWHDQPESWVG 229
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Probable methyltransferase. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/220 (56%), Positives = 163/220 (74%), Gaps = 6/220 (2%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFE--GVKRVVDLCAAPGSWSQV 58
MGK+S+DKRD+YYRKAKE+G+RARSAFKLLQ++++F+ + +KRVVDLCAAPGSWSQV
Sbjct: 1 MGKSSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQV 60
Query: 59 LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC 118
LSRKL+ SP S + D IV++DLQPM+PI V +Q DIT+ +T +++ F
Sbjct: 61 LSRKLF---DESPSSDKEDRK-IVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNE 116
Query: 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178
KAD V DGAPDVTGLHD+DE+VQ QLI++ L + +LK+GG F+AKIFRG+D +LY
Sbjct: 117 KADFVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYS 176
Query: 179 QLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
QL F + AKP+SSR +S+EAF VC Y PP + PK
Sbjct: 177 QLGYLFDKIVCAKPRSSRGTSLEAFIVCLGYNPPSNWTPK 216
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Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spb1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 120/209 (57%), Gaps = 12/209 (5%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV + +PA+
Sbjct: 13 DKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPAQ- 69
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
LIV +DL P+ PI VI Q DIT + + H KAD V+ DGAP
Sbjct: 70 ---------SLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+V D F Q++L+L L + T L EGG F+ K+FR KD + L K F V
Sbjct: 121 NVGTAWVQDAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEA 180
Query: 190 AKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
KP SSRN S E F VC Y P+ +PK
Sbjct: 181 TKPPSSRNVSAEIFVVCRGYKAPKRIDPK 209
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Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spb1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 120/209 (57%), Gaps = 12/209 (5%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV + +P +
Sbjct: 13 DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPTQ- 69
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
+I+ +DL P+ PI VI Q DIT + + +H KAD V+ DGAP
Sbjct: 70 ---------SIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+V D F Q++L+L + + T L EGG F+ K+FR KD + L K F V
Sbjct: 121 NVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEA 180
Query: 190 AKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
KP SSRN S E F VC + P+ +PK
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFKAPKRIDPK 209
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Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 119/209 (56%), Gaps = 12/209 (5%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +Y+ AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV A++
Sbjct: 13 DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQV-------AAEV 65
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
P S LIV +DL P+ PI VI Q DIT + + +H KAD V+ DGAP
Sbjct: 66 MPVS-----SLIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+V D F Q++L L + + T L EGG F+ K+FR KD + + F V
Sbjct: 121 NVGTAWVQDSFNQAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEA 180
Query: 190 AKPKSSRNSSIEAFAVCENYFPPEGFNPK 218
KP SSRN S E F VC + P+ +PK
Sbjct: 181 TKPPSSRNVSAEIFVVCRGFKAPKRIDPK 209
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Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | ||||||
| 30679168 | 309 | S-adenosyl-L-methionine-dependent methyl | 0.943 | 0.760 | 0.944 | 1e-127 | |
| 255581073 | 316 | ribosomal RNA methyltransferase, putativ | 0.943 | 0.743 | 0.948 | 1e-127 | |
| 225440636 | 316 | PREDICTED: putative ribosomal RNA methyl | 0.943 | 0.743 | 0.948 | 1e-127 | |
| 357446585 | 316 | rRNA methyltransferase-like protein [Med | 0.943 | 0.743 | 0.948 | 1e-127 | |
| 297806107 | 309 | hypothetical protein ARALYDRAFT_486954 [ | 0.943 | 0.760 | 0.944 | 1e-127 | |
| 224146194 | 316 | predicted protein [Populus trichocarpa] | 0.943 | 0.743 | 0.948 | 1e-126 | |
| 356555232 | 316 | PREDICTED: putative ribosomal RNA methyl | 0.963 | 0.759 | 0.920 | 1e-126 | |
| 222423600 | 309 | AT5G01230 [Arabidopsis thaliana] | 0.943 | 0.760 | 0.940 | 1e-126 | |
| 449439914 | 316 | PREDICTED: putative ribosomal RNA methyl | 0.943 | 0.743 | 0.940 | 1e-125 | |
| 21593533 | 308 | cell division-like protein [Arabidopsis | 0.939 | 0.759 | 0.940 | 1e-125 |
| >gi|30679168|ref|NP_851026.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|26983822|gb|AAN86163.1| putative cell division protein [Arabidopsis thaliana] gi|332002931|gb|AED90314.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/235 (94%), Positives = 229/235 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S++GDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQSQLILAGLT+VTH+LKEGGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFP VTFAKPKSSRNSSIEAFAVCENY PPEGFNP+DLHRLLEKVGSP GG D
Sbjct: 181 KLFFPTVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPRDLHRLLEKVGSPSGGSD 235
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581073|ref|XP_002531352.1| ribosomal RNA methyltransferase, putative [Ricinus communis] gi|223529050|gb|EEF31036.1| ribosomal RNA methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/235 (94%), Positives = 230/235 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKL+ DSR+ +LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RKLYLPAKLTQDSRDDNLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQSQLILAGLT+VTH+L+EGGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILREGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFPVVTFAKPKSSRNSSIEAFAVCENY PPEGFNPKDLHRLLEKVGSP G +D
Sbjct: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGMDD 235
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440636|ref|XP_002278921.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Vitis vinifera] gi|297740237|emb|CBI30419.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/235 (94%), Positives = 230/235 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKL+LPAKLSP SR+GDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAE+VIRHFDGCKA
Sbjct: 61 RKLFLPAKLSPASRDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAELVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQSQLILAGLT+VTHVLK+GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKKGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFP+VTFAKPKSSRNSSIEAFAVCENY PPEGFN KDLHRLLEKVGSP G +D
Sbjct: 181 KLFFPIVTFAKPKSSRNSSIEAFAVCENYSPPEGFNEKDLHRLLEKVGSPSGADD 235
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446585|ref|XP_003593568.1| rRNA methyltransferase-like protein [Medicago truncatula] gi|355482616|gb|AES63819.1| rRNA methyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/235 (94%), Positives = 231/235 (98%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKL+PD+++ +LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RKLYLPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
+LVVCDGAPDVTGLHDMDEFVQSQLILAGLT+VTHVLKEGGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 NLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFPVVTFAKPKSSRNSSIEAFAVCENY PPEGFNPKDLHRLLEKVGSP G +D
Sbjct: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDD 235
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806107|ref|XP_002870937.1| hypothetical protein ARALYDRAFT_486954 [Arabidopsis lyrata subsp. lyrata] gi|297316774|gb|EFH47196.1| hypothetical protein ARALYDRAFT_486954 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/235 (94%), Positives = 228/235 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S+EG LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKEGGLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQSQLILAGLT+VTH+LKEGGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFP VTFAKPKSSRNSSIEAFAVCENY PPEGFNP+DLHRLLEKVGSP GG D
Sbjct: 181 KLFFPTVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPRDLHRLLEKVGSPSGGSD 235
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146194|ref|XP_002325916.1| predicted protein [Populus trichocarpa] gi|222862791|gb|EEF00298.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/235 (94%), Positives = 229/235 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ASRDKRDIYYRKAKEEGWRARSAFKL+QIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRASRDKRDIYYRKAKEEGWRARSAFKLIQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKLSPDSR+ DLPLIVAIDLQPMA IEGVIQVQGDITNARTAEVVIRHFDG KA
Sbjct: 61 RKLYLPAKLSPDSRDNDLPLIVAIDLQPMALIEGVIQVQGDITNARTAEVVIRHFDGSKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQSQLILAGLT+VTHVLKEGGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFPVVTFAKPKSSRNSSIEAFAVCENY PPEGF+PKDLHRLLEKVGSP G +D
Sbjct: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFDPKDLHRLLEKVGSPSGADD 235
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555232|ref|XP_003545938.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/240 (92%), Positives = 233/240 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFN+F+GVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNLFDGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKL+PD+++ +LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RKLYLPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQSQL+LAGLT+VTHVLKEGGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLLLAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQGQCA 240
KLFFPVVTFAKPKSSRNSSIEAFAVCENY PPEGFNPKDLHRLLEKVGSP G +D C+
Sbjct: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDDTDCCS 240
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222423600|dbj|BAH19769.1| AT5G01230 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/235 (94%), Positives = 228/235 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S++GDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCD APDVTGLHDMDEFVQSQLILAGLT+VTH+LKEGGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDDAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFP VTFAKPKSSRNSSIEAFAVCENY PPEGFNP+DLHRLLEKVGSP GG D
Sbjct: 181 KLFFPTVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPRDLHRLLEKVGSPSGGSD 235
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439914|ref|XP_004137730.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Cucumis sativus] gi|449483463|ref|XP_004156599.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/235 (94%), Positives = 229/235 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKLSPD ++G+LPLIVAIDLQPMAPIEGVI+VQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RKLYLPAKLSPDLKDGELPLIVAIDLQPMAPIEGVIEVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQ QLILAGLT+VTH+L+EGGKFIAKIFRGKDTSLLY QL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQFQLILAGLTIVTHILREGGKFIAKIFRGKDTSLLYSQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFPVVTFAKPKSSRNSSIEAFAVCENY PPEGFN KDLHRLLEKVGSP GG+D
Sbjct: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNSKDLHRLLEKVGSPSGGDD 235
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21593533|gb|AAM65500.1| cell division-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/235 (94%), Positives = 228/235 (97%), Gaps = 1/235 (0%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S++GDLPLIVAIDLQPMAPIEGVIQVQGDITNART EVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNART-EVVIRHFDGCKA 119
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQSQLILAGLT+VTH+LKEGGKFIAKIFRGKDTSLLYCQL
Sbjct: 120 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQL 179
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFP VTFAKPKSSRNSSIEAFAVCENY PPEGFNP+DLHRLLEKVGSP GG D
Sbjct: 180 KLFFPTVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPRDLHRLLEKVGSPSGGSD 234
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | ||||||
| TAIR|locus:2150069 | 309 | AT5G01230 [Arabidopsis thalian | 0.943 | 0.760 | 0.944 | 5.4e-118 | |
| ZFIN|ZDB-GENE-041114-83 | 323 | ftsj1 "FtsJ homolog 1 (E. coli | 0.875 | 0.674 | 0.688 | 1.4e-78 | |
| RGD|1561061 | 326 | Ftsj1 "FtsJ RNA methyltransfer | 0.855 | 0.653 | 0.674 | 7.1e-77 | |
| UNIPROTKB|E2REZ9 | 329 | FTSJ1 "Uncharacterized protein | 0.879 | 0.665 | 0.640 | 3.5e-75 | |
| UNIPROTKB|A0JNB8 | 307 | FTSJ1 "Uncharacterized protein | 0.879 | 0.713 | 0.640 | 4.5e-75 | |
| DICTYBASE|DDB_G0280483 | 270 | fsjA "rRNA (uridine-2'-O-)-met | 0.875 | 0.807 | 0.644 | 7.3e-75 | |
| UNIPROTKB|Q9UET6 | 329 | FTSJ1 "Putative tRNA (cytidine | 0.879 | 0.665 | 0.640 | 9.3e-75 | |
| WB|WBGene00011281 | 337 | R74.7 [Caenorhabditis elegans | 0.835 | 0.617 | 0.649 | 5.3e-72 | |
| UNIPROTKB|F1MSM7 | 307 | F1MSM7 "Uncharacterized protei | 0.879 | 0.713 | 0.606 | 1.4e-71 | |
| POMBASE|SPAC4F10.03c | 285 | SPAC4F10.03c "tRNA 2'-O-ribose | 0.879 | 0.768 | 0.615 | 9.9e-71 |
| TAIR|locus:2150069 AT5G01230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 222/235 (94%), Positives = 229/235 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S++GDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHDMDEFVQSQLILAGLT+VTH+LKEGGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQL 180
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGED 235
KLFFP VTFAKPKSSRNSSIEAFAVCENY PPEGFNP+DLHRLLEKVGSP GG D
Sbjct: 181 KLFFPTVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPRDLHRLLEKVGSPSGGSD 235
|
|
| ZFIN|ZDB-GENE-041114-83 ftsj1 "FtsJ homolog 1 (E. coli)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 155/225 (68%), Positives = 180/225 (80%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRDIYYR AKEEGWRARSAFKLLQ+DEEF +F GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDIYYRLAKEEGWRARSAFKLLQLDEEFKLFRGVSRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKL D E ++ IVA+DLQ MAP+ GV Q+QGDIT TAE +IRHF+G A
Sbjct: 61 RKLR-----GKDKSE-EVK-IVAVDLQAMAPLPGVTQIQGDITKISTAEEIIRHFEGESA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRGKD +LLY QL
Sbjct: 114 DLVVCDGAPDVTGLHDVDEYIQAQLLLAALNITTHVLKPGGNFVAKIFRGKDVTLLYSQL 173
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLE 225
K+FF VT AKP SSRNSSIEAF VC+NY PPEG+ P + LL+
Sbjct: 174 KIFFSFVTCAKPPSSRNSSIEAFVVCQNYSPPEGYVPNMSNPLLD 218
|
|
| RGD|1561061 Ftsj1 "FtsJ RNA methyltransferase homolog 1 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 151/224 (67%), Positives = 180/224 (80%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE+GWRARSAFKLLQ+DEEF +F+GVKR VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKEKGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ G +VA+DLQ MAP+ GVIQ+QGDIT TA+ +I+HF+GC A
Sbjct: 61 QKV-------GGQSSGQ---VVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +LLY QL
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQL 170
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLL 224
++FF V AKPKSSRNSSIEAFAVC+ Y PPEGF P DL R L
Sbjct: 171 RIFFSSVLCAKPKSSRNSSIEAFAVCQGYDPPEGFIP-DLTRPL 213
|
|
| UNIPROTKB|E2REZ9 FTSJ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 148/231 (64%), Positives = 183/231 (79%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+DEEF++F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF+GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +L+Y QL
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQL 170
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHR-LLEKVGSP 230
++FF V AKP+SSRNSSIEAFAVC+ Y PPEGF P DL + LL+ P
Sbjct: 171 RVFFSNVLCAKPRSSRNSSIEAFAVCQGYDPPEGFLP-DLTKPLLDHSYDP 220
|
|
| UNIPROTKB|A0JNB8 FTSJ1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 148/231 (64%), Positives = 182/231 (78%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+DEEF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF+GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +L+Y QL
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLIYSQL 170
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHR-LLEKVGSP 230
++FF V AKP+SSRNSSIEAFAVC+ Y PPEGF P DL + LL+ P
Sbjct: 171 RVFFSSVLCAKPRSSRNSSIEAFAVCKGYDPPEGFLP-DLTKPLLDHSYDP 220
|
|
| DICTYBASE|DDB_G0280483 fsjA "rRNA (uridine-2'-O-)-methyltransferase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 145/225 (64%), Positives = 177/225 (78%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R++Y K PD + IVA+DLQ MAP++GV+Q++GDIT T++ +I HFDG A
Sbjct: 61 RRIYGDGK-DPDVK------IVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DL++ DGAPDVTGLHD+D + QSQLIL+ L + TH LK GG F+AK+F+G D SL+Y Q+
Sbjct: 114 DLIISDGAPDVTGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQM 173
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLE 225
KLFF V+F KP SSR SS+E F +C NY PP +NPK + LE
Sbjct: 174 KLFFEHVSFVKPSSSRESSLENFILCRNYQPPLNYNPKIIDPALE 218
|
|
| UNIPROTKB|Q9UET6 FTSJ1 "Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 148/231 (64%), Positives = 181/231 (78%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +LLY QL
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQL 170
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHR-LLEKVGSP 230
++FF V AKP+SSRNSSIEAFAVC+ Y PPEGF P DL + LL+ P
Sbjct: 171 QVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP-DLSKPLLDHSYDP 220
|
|
| WB|WBGene00011281 R74.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 141/217 (64%), Positives = 171/217 (78%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK SRDKRDIYYR AKE WRARSAFKL+QID+EF I +GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY + +E IVAIDLQPMAPI GVIQ+QGDIT+ TA VI+HF G K+
Sbjct: 61 KRLY------EEDQEAK---IVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKS 111
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
D+V+CDGAPDVTG+H +DEF+Q++LILA + +HVLKEGG F+AKIFR +++SLLY Q+
Sbjct: 112 DIVICDGAPDVTGIHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQM 171
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNP 217
K +F V AKP+SSR SS EAF +C +Y PPEGF P
Sbjct: 172 KKYFKKVYLAKPRSSRQSSCEAFVLCLDYSPPEGFVP 208
|
|
| UNIPROTKB|F1MSM7 F1MSM7 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 140/231 (60%), Positives = 179/231 (77%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S DK+D+Y+R +KE GWRA SAFKLLQ+DEEF++F+GV R VDLCAAPG W+QVLS
Sbjct: 1 MGRTSEDKQDVYHRLSKETGWRAHSAFKLLQLDEEFHLFQGVMRAVDLCAAPGGWTQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +++HF+ C A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIVQHFEDCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180
DLVVCDGAPDVTGLHD+DE++QSQL+LA L + THVLK GG F+AKIFRG+D +L+Y QL
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQSQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLVYSQL 170
Query: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHR-LLEKVGSP 230
++FF V AKP+SSRN+SIEAFAVC+ Y PPEGF P DL + LL+ P
Sbjct: 171 RVFFSSVLCAKPRSSRNASIEAFAVCKGYDPPEGFLP-DLSKPLLDHSYDP 220
|
|
| POMBASE|SPAC4F10.03c SPAC4F10.03c "tRNA 2'-O-ribose methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 139/226 (61%), Positives = 176/226 (77%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FEG KRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLY--LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC 118
R+L + ++ D + P+IVA+DLQPMAPI+GV +Q DIT+ T +++ HF
Sbjct: 61 RELLKNIDTSIAADEK----PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNE 116
Query: 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178
ADLVV DGAPDVTGLHD+DE++Q+Q++LA + VLK GGKF+AKIFRG+D SLLY
Sbjct: 117 PADLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYS 176
Query: 179 QLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLL 224
QL+L F V+ AKP+SSR SSIE+F VCE++ PP F P DL + L
Sbjct: 177 QLRLMFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQP-DLTKPL 221
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q466Q1 | RLME_METBF | 2, ., 1, ., 1, ., 1, 6, 6 | 0.3318 | 0.8634 | 0.8174 | yes | no |
| Q9VEP1 | TRM71_DROME | 2, ., 1, ., 1, ., - | 0.5822 | 0.9076 | 0.7483 | yes | no |
| O36015 | TRM7_SCHPO | 2, ., 1, ., 1, ., - | 0.6313 | 0.8634 | 0.7543 | yes | no |
| P38238 | TRM7_YEAST | 2, ., 1, ., 1, ., - | 0.5681 | 0.8594 | 0.6903 | yes | no |
| Q54VA8 | TRM7_DICDI | 2, ., 1, ., 1, ., - | 0.6444 | 0.8755 | 0.8074 | yes | no |
| Q9UET6 | TRM7_HUMAN | 2, ., 1, ., 1, ., - | 0.6347 | 0.8835 | 0.6686 | yes | no |
| O27801 | RLME_METTH | 2, ., 1, ., 1, ., 1, 6, 6 | 0.3378 | 0.8112 | 0.9573 | yes | no |
| Q8PUP4 | RLME_METMA | 2, ., 1, ., 1, ., 1, 6, 6 | 0.3362 | 0.8634 | 0.8022 | yes | no |
| Q22031 | TRM7_CAEEL | 2, ., 1, ., 1, ., - | 0.6497 | 0.8353 | 0.6172 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
| 4th Layer | 2.1.1.166 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 249 | |||
| COG0293 | 205 | COG0293, FtsJ, 23S rRNA methylase [Translation, ri | 4e-79 | |
| pfam01728 | 177 | pfam01728, FtsJ, FtsJ-like methyltransferase | 3e-63 | |
| TIGR00438 | 188 | TIGR00438, rrmJ, cell division protein FtsJ | 5e-47 | |
| PRK11188 | 209 | PRK11188, rrmJ, 23S rRNA methyltransferase J; Prov | 2e-29 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 1e-05 |
| >gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 4e-79
Identities = 85/209 (40%), Positives = 120/209 (57%), Gaps = 12/209 (5%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+ RD YY+KAK+EG+R+R+A+KLL+++E+F +F+ VVDL AAPG WSQV ++KL
Sbjct: 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKL- 67
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
G IVA+D+ PM PI GVI +QGDIT+ T E ++ G D+V+
Sbjct: 68 -----------GAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVL 116
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 184
D AP+ +G +D L L VLK GG F+AK+F+G+D L L+ F
Sbjct: 117 SDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF 176
Query: 185 PVVTFAKPKSSRNSSIEAFAVCENYFPPE 213
V KPK+SR S E + V + + E
Sbjct: 177 RKVKIFKPKASRKRSREIYLVAKGFKGKE 205
|
Length = 205 |
| >gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 3e-63
Identities = 80/191 (41%), Positives = 113/191 (59%), Gaps = 16/191 (8%)
Query: 21 WRARSAFKLLQIDEEFNIFEGV-KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79
+ +R+A+KLL+IDE F + G K V+DL AAPG +SQVL + G
Sbjct: 1 YVSRAAYKLLEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLER-------------GGAG 47
Query: 80 LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
+VA+DL PM PI+GV ++GDIT+ T E + G K DLV+ DGAP+V+G+ + D
Sbjct: 48 KVVAVDLGPMEPIQGVYFLRGDITDPETLEKLRELLPG-KVDLVLSDGAPNVSGIENTDS 106
Query: 140 FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS-LLYCQLKLFFPVVTFAKPKSSRNS 198
F+ QL+LA L + VL+ GG F+ K+F+G + S L +LK F V KP +SR S
Sbjct: 107 FISLQLVLAALLLALEVLRPGGNFVVKVFKGFEFSVELLEKLKKGFEKVGIFKPPASRPS 166
Query: 199 SIEAFAVCENY 209
S E + VC +
Sbjct: 167 SSEEYLVCLGF 177
|
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177 |
| >gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 5e-47
Identities = 69/200 (34%), Positives = 111/200 (55%), Gaps = 12/200 (6%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D YY+KAK+E +R+R++FKLLQ++++F + + V+DL AAPG WSQV ++
Sbjct: 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQV------ 54
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
G ++A+DLQPM PIE V ++GD T+ + K D+V+ D AP
Sbjct: 55 ------GGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+++G D+D L+ L + VLK G F+ K+F+G++ +L+ F V
Sbjct: 109 NISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKV 168
Query: 190 AKPKSSRNSSIEAFAVCENY 209
KP++SR S E + V + +
Sbjct: 169 TKPQASRKRSAEVYIVAKRF 188
|
Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188 |
| >gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-29
Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D Y ++A+++G R+R+ FKL +I + +F+ VVDL AAPG WSQ ++
Sbjct: 20 DKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQI------ 73
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
GD ++A D+ PM PI GV +QGD + + ++ K +V+ D AP
Sbjct: 74 ------GDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189
+++G +D L+ L + VL GG F+ K+F+G+ +++ F V
Sbjct: 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV 187
Query: 190 AKPKSSRNSSIEAFAVCENY 209
KP SSR S E + V
Sbjct: 188 RKPDSSRARSREVYIVATGR 207
|
Length = 209 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 39/159 (24%)
Query: 15 KAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSR 74
K +E+ + +R KL + EEF + K V+D+ ++ G ++ VL ++ AK
Sbjct: 53 KGEEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR---GAK------ 103
Query: 75 EGDLPLIVAIDL--QPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128
+ A+D+ + VI ++ TN R F K DL+V D
Sbjct: 104 -----HVYAVDVGYGQLHWKLRNDPRVIVLER--TNVRYLTP--EDFTE-KPDLIVID-- 151
Query: 129 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167
F+ +LIL + +LK+GG + +
Sbjct: 152 ---------VSFISLKLILP---ALLLLLKDGGDLVLLV 178
|
Length = 245 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 100.0 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 100.0 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 100.0 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 100.0 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 100.0 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 100.0 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.98 | |
| KOG3673 | 845 | consensus FtsJ-like RNA methyltransferase [RNA pro | 99.94 | |
| KOG3674 | 696 | consensus FtsJ-like RNA methyltransferase [RNA pro | 99.88 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.59 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.51 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.51 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.5 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.47 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.45 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.43 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.4 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.4 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.39 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.38 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.38 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 99.37 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.36 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.36 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 99.35 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.32 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.31 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.31 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.3 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.25 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.23 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.22 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.22 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.22 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 99.22 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.21 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.2 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.2 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.19 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.19 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.19 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.18 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.18 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.18 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.18 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.16 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.16 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.15 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 99.14 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.14 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.13 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.12 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.12 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.12 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.11 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.11 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.1 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.09 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.09 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.08 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 99.07 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.07 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.07 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.07 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.06 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.05 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.05 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.05 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.04 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.04 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.04 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.04 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.02 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.01 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.01 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.01 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.0 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.0 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.99 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.99 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 98.98 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.97 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.95 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.94 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.93 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.93 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.93 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.92 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.92 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.92 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.91 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.91 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.9 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.9 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.9 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.9 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.88 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.88 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.87 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.86 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.84 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.84 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.84 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.83 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.82 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.82 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.81 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.81 | |
| PF14314 | 675 | Methyltrans_Mon: Virus-capping methyltransferase | 98.8 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.8 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.8 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.77 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.74 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.74 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.73 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.72 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.71 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.7 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.69 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.69 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.68 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.67 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.65 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.64 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.6 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.6 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.6 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.58 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.58 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.58 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.58 | |
| PLN02366 | 308 | spermidine synthase | 98.56 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.54 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.54 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.53 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.52 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.51 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.51 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.46 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.42 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.41 | |
| PLN02476 | 278 | O-methyltransferase | 98.41 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.4 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.4 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.39 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.39 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.37 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.37 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.36 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.34 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.33 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.33 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.33 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.3 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.29 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.26 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.25 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.23 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.21 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.2 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.15 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.14 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.11 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.11 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.09 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.08 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.07 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.06 | |
| PLN02823 | 336 | spermine synthase | 98.06 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.01 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.01 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.0 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.99 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.99 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.97 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.95 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.94 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 97.92 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.91 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.9 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.88 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.88 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.88 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.86 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.85 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.85 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.85 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.83 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.83 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.82 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.82 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.78 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.77 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.77 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.77 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.76 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.75 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.75 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.74 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.71 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.64 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.6 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.57 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.56 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.54 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.54 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.51 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.47 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.45 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.45 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.45 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.44 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.43 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.38 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.31 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.29 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.24 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.23 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.23 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.21 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.21 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.21 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.18 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.17 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.08 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.98 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.93 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.91 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.88 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 96.88 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.87 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.83 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.75 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 96.75 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.73 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.69 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.67 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.55 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.52 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.31 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.26 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.26 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.24 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.17 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.13 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.84 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 95.54 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 95.32 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 95.32 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 95.14 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.12 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.12 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 95.1 | |
| PF06016 | 1289 | Reovirus_L2: Reovirus core-spike protein lambda-2 | 95.02 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.78 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 94.58 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.54 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.51 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.51 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 94.14 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.96 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 93.85 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.77 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 93.4 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.13 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 92.75 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 92.55 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 92.49 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.29 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 91.85 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.71 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.64 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 90.84 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 90.51 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 90.45 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 90.39 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 90.3 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 90.2 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 90.16 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 89.92 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 89.58 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 89.5 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 89.47 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.97 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 88.88 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 88.63 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 88.31 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 88.25 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 87.54 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 86.86 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 86.61 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 86.43 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 86.25 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 85.65 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 85.59 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 85.44 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 85.33 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 85.26 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 85.15 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.84 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 84.72 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 84.48 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.04 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 83.99 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 83.97 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 83.87 | |
| PHA01634 | 156 | hypothetical protein | 83.4 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 83.25 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 82.91 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 82.77 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.74 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.49 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 82.33 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 82.01 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.78 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.55 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 81.15 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 81.15 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 81.02 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 80.53 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 80.09 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 80.01 |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=339.23 Aligned_cols=219 Identities=75% Similarity=1.142 Sum_probs=203.2
Q ss_pred CCCCCCCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCe
Q 025715 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (249)
Q Consensus 1 ~~~~~~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~ 80 (249)
|||+|++++|.||++||++|||.|++|||++|++.|++|+.-.+|+|||++||+||+++++++..+-.. .+..+.+
T Consensus 1 MGktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~----~~~~~~k 76 (294)
T KOG1099|consen 1 MGKTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPS----SGERDKK 76 (294)
T ss_pred CCCccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCC----cchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999988632111 1112236
Q ss_pred EEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC
Q 025715 81 IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (249)
Q Consensus 81 vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g 160 (249)
|++||+++|++++||.-+++||++..+...|.++|++++.|+|+|||+|+++|.++.|++.+.+|+.++|..+..+||||
T Consensus 77 IVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 77 IVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHh
Q 025715 161 GKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRL 223 (249)
Q Consensus 161 G~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~ 223 (249)
|+||-|+|++.++..+...|+.+|+.|...||.+||..|.|.|+||.||-.+..+.|.+-.-|
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~ 219 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPL 219 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999764333
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=320.92 Aligned_cols=195 Identities=43% Similarity=0.659 Sum_probs=188.6
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEec
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavD 85 (249)
++++|+||++|+++||++||+|||.||+++|+++++|++|+||||+||+|+|+++++++ ..+.|+|+|
T Consensus 10 ~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~------------~~~~ivavD 77 (205)
T COG0293 10 EHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG------------AGGKIVAVD 77 (205)
T ss_pred HhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhC------------CCCcEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999987 457799999
Q ss_pred CCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 86 LQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 86 i~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++|+.++++|.++++|+++.++...|...+....+|+|+|||+|+++|.++.|+.+++.|+..++..|..+|+|||.|++
T Consensus 78 i~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 78 ILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred CcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 99999999999999999999999999999988789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCC
Q 025715 166 KIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPP 212 (249)
Q Consensus 166 k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~ 212 (249)
|+|++++.+.+++.++++|+.|...||.+||..|+|+|++|.||+++
T Consensus 158 K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~ 204 (205)
T COG0293 158 KVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204 (205)
T ss_pred EEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence 99999999999999999999999999999999999999999999875
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=307.53 Aligned_cols=197 Identities=32% Similarity=0.558 Sum_probs=190.0
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEec
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavD 85 (249)
|+.+|||+++||...|++||+|||+||+++|++++|+.+|||+||+||+|+|.+.++.+ +.+.|.|||
T Consensus 34 Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~------------p~g~v~gVD 101 (232)
T KOG4589|consen 34 RQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN------------PNGMVLGVD 101 (232)
T ss_pred HhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhC------------CCceEEEEe
Confidence 68899999999999999999999999999999999999999999999999999999986 679999999
Q ss_pred CCCCCCCCCceEeec-CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 86 LQPMAPIEGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 86 i~~~~~~~~v~~~~g-Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
+.+..+.+|+.++++ |++++.+...|.+.+++..+|+|+|||.|+.+|.+..|+..+++|+.+++..|...++|+|+|+
T Consensus 102 llh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 102 LLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred eeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCC
Q 025715 165 AKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEG 214 (249)
Q Consensus 165 ~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~ 214 (249)
||++.+++...+...|...|..|+.+||.+||..|+|.|++|+.|+++.+
T Consensus 182 cK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~~d 231 (232)
T KOG4589|consen 182 CKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKGNVD 231 (232)
T ss_pred EEEecCCchHHHHHHHHHHhhhcEeeCCccccccccceeeeeeeccCcCC
Confidence 99999999999999999999999999999999999999999999998754
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=279.51 Aligned_cols=194 Identities=31% Similarity=0.481 Sum_probs=176.5
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEec
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavD 85 (249)
++.+|+||++++..+|++|++|||.||+++|++++++.+|||||||||+|+++++++.+ +.+.|+|||
T Consensus 16 ~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~------------~~~~V~aVD 83 (209)
T PRK11188 16 EHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG------------DKGRVIACD 83 (209)
T ss_pred HhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC------------CCceEEEEe
Confidence 57789999999999999999999999999999999999999999999999999999875 457999999
Q ss_pred CCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 86 LQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 86 i~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++++...++++++++|+++.+.++++.+.+..++||+|+||+++.+.|.+..+......+...++..+.++|+|||.|++
T Consensus 84 i~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 84 ILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred cccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99988888999999999998877777777777899999999998887765555555555567899999999999999999
Q ss_pred EEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccC
Q 025715 166 KIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFP 211 (249)
Q Consensus 166 k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~ 211 (249)
+++.++++.+++..++.+|+.+.++||.+||..|+|+|+||+||++
T Consensus 164 ~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 164 KVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred EEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 9999999999999999999999999999999999999999999974
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=313.29 Aligned_cols=214 Identities=40% Similarity=0.641 Sum_probs=200.4
Q ss_pred CCC---CCCCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCC
Q 025715 1 MGK---ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD 77 (249)
Q Consensus 1 ~~~---~~~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~ 77 (249)
||| +...++|.||++|++.||++||+|||+||+.+|+|+.++..||||||+||+|.|++++.++ .
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p------------v 68 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP------------V 68 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCC------------C
Confidence 888 3379999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc
Q 025715 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (249)
Q Consensus 78 ~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (249)
++.|+|||+-|+.+++++..++.||+...+...+...+..-+.|+|++||+|++.|.|..+.+.+..|...++.+|...|
T Consensus 69 ~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l 148 (780)
T KOG1098|consen 69 GSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFL 148 (780)
T ss_pred CceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 68999999999999999988999999988877776666666789999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHh
Q 025715 158 KEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEK 226 (249)
Q Consensus 158 k~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~ 226 (249)
+.||+||.++|++.++..+++.+.+.|.+|...||.+||..|.|+|+||.||..+...+|++++-.+-+
T Consensus 149 ~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~vf 217 (780)
T KOG1098|consen 149 AKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKLVF 217 (780)
T ss_pred HhcCccccccccCCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCccccCccccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999877443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=266.32 Aligned_cols=177 Identities=42% Similarity=0.676 Sum_probs=151.6
Q ss_pred cchhhhhhHHhhhhhcCcccCC--CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEe
Q 025715 21 WRARSAFKLLQIDEEFNIFEGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQV 98 (249)
Q Consensus 21 ~~~ra~~KL~ei~~~~~~~~~g--~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~ 98 (249)
|++||++||.||+++|++++++ .+||||||+||||+++++++.+ +.++|+|||+.++.+.+++.++
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~------------~~~~v~avDl~~~~~~~~~~~i 68 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG------------PAGRVVAVDLGPMDPLQNVSFI 68 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT------------TEEEEEEEESSSTGS-TTEEBT
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc------------ccceEEEEeccccccccceeee
Confidence 7999999999999999988664 9999999999999999999873 3589999999999888999999
Q ss_pred ecCCCChhhHHHHHHhcCC--CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 99 QGDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~--~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
++|+++..+.+.+.+.+.. +.+|+|+||++++++|.++.|+..+.+++..++..|...|+|||+||+|++..+....+
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~ 148 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEEL 148 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHH
T ss_pred ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHH
Confidence 9999998877766665543 68999999999999999999999999999999999999999999999999987666689
Q ss_pred HHHHhcCCCeeEEecCCCCCCCCceEEEEEeec
Q 025715 177 YCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENY 209 (249)
Q Consensus 177 ~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~ 209 (249)
++.++.+|++|.++||.+||+.|+|.|+||+||
T Consensus 149 ~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 149 IYLLKRCFSKVKIVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp HHHHHHHHHHEEEEE-TTSBTTCBEEEEESEEE
T ss_pred HHHHHhCCeEEEEEECcCCCCCccEEEEEEcCC
Confidence 999999999999999999999999999999997
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.3e-31 Score=217.00 Aligned_cols=188 Identities=36% Similarity=0.659 Sum_probs=166.2
Q ss_pred ChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 10 d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
|.||+.+++++|++|.+|||.++++++..+++|.+|||+|||||+++..++.+.. +.++|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~------------~~~~v~~vDis~~ 68 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG------------GKGRVIAVDLQPM 68 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC------------CCceEEEEecccc
Confidence 6799999999999999999999999999999999999999999999999988764 3578999999997
Q ss_pred CCCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 90 APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 90 ~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
...++++++++|+.+.+....+.+.+..++||+|++|++++..|.++.++.........++..+.++|+|||++++.++.
T Consensus 69 ~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 69 KPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 65578888999998876655555556667899999999877777777777666666778899999999999999998888
Q ss_pred CCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeec
Q 025715 170 GKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENY 209 (249)
Q Consensus 170 ~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~ 209 (249)
..+..+++..++..|..+.+.+|.++|..|+|.|+||.||
T Consensus 149 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 149 GEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred CccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence 8888899988888899999999999999999999999987
|
|
| >KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-28 Score=219.53 Aligned_cols=237 Identities=20% Similarity=0.335 Sum_probs=186.4
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcc--cC----C-----------CeEEEEcCCCChHHHHHHHHhc-CCC
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF--EG----V-----------KRVVDLCAAPGSWSQVLSRKLY-LPA 67 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~--~~----g-----------~~vLDLG~gpG~~s~~l~~~~~-~~~ 67 (249)
|.|++|| ...+..=|.+||+.|+..++..|.++ +| | ..+.|+|+||||||.|++.+-. .++
T Consensus 216 RtRaNPy-EtIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~AK 294 (845)
T KOG3673|consen 216 RTRANPY-ETIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWNAK 294 (845)
T ss_pred hhcCChH-HHHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhccc
Confidence 5778995 88888889999999999999999975 11 1 2567999999999999877643 345
Q ss_pred CCCCCCCCCCCCeE---EEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC----CCcccEEEeCCCCCCCCCCCcCHH
Q 025715 68 KLSPDSREGDLPLI---VAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD----GCKADLVVCDGAPDVTGLHDMDEF 140 (249)
Q Consensus 68 ~~~~~~~~~~~~~v---vavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~----~~~~DlVlsD~~~~~~g~~~~~~~ 140 (249)
|.+.|+.+..+-+. +|-....+.+.+|+. ..|||+++.++..+..++. +..+++.++||.+++.|+.|.++.
T Consensus 295 GFGfTL~G~nDFKLekF~aaS~e~FetfYG~k-~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEI 373 (845)
T KOG3673|consen 295 GFGFTLAGKNDFKLEKFTAASQEFFETFYGTK-DDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEI 373 (845)
T ss_pred cceeEeccCCccchhhhhhcCHHhhhcccccc-CCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHH
Confidence 55555555444332 222222233456753 6799999988777666543 356999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEecCCC--HHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCC----
Q 025715 141 VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD--TSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEG---- 214 (249)
Q Consensus 141 ~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~--~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~---- 214 (249)
.+.+|+..++..|+.++++||.|+||+|.... ..-+.++|..+|+.|.++||.+|||+++|+|+||+|.+....
T Consensus 374 LSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~~~~~v~ 453 (845)
T KOG3673|consen 374 LSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKEFANVVK 453 (845)
T ss_pred HHHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhhhHHHHH
Confidence 99999999999999999999999999997443 456778888899999999999999999999999999886533
Q ss_pred -CCchhhhHhHHhhCCCCCCCCCccccCc-eEE
Q 025715 215 -FNPKDLHRLLEKVGSPWGGEDQGQCACN-IHY 245 (249)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 245 (249)
|..+ ++++++++.+.=..|+-..+|++ |.-
T Consensus 454 ~YL~~-VN~kL~~l~n~d~~DV~~~~pl~vi~~ 485 (845)
T KOG3673|consen 454 EYLKR-VNRKLDELKNKDSDDVTDLMPLDVIEA 485 (845)
T ss_pred HHHHH-HHHHHHHhhcCCchhHhhhccHHhhhc
Confidence 4443 67889999988878888888877 543
|
|
| >KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-23 Score=184.09 Aligned_cols=217 Identities=24% Similarity=0.276 Sum_probs=158.8
Q ss_pred HhccchhhhhhHHhhhhhcCcc-cCCC--eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC------
Q 025715 18 EEGWRARSAFKLLQIDEEFNIF-EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP------ 88 (249)
Q Consensus 18 ~~~~~~ra~~KL~ei~~~~~~~-~~g~--~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~------ 88 (249)
.....+.||.||-||...|++. .++. ..++||.|||+|...+.+.+...++.. ....+..|..++|
T Consensus 106 ~ae~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~k~-----~~~W~W~anTLNPY~E~n~ 180 (696)
T KOG3674|consen 106 IAENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRGKN-----MSYWKWGANTLNPYFENNS 180 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhccCCc-----cceeeeccCccCcccccch
Confidence 3446678999999999999975 4444 789999999999998877664322210 0111233333333
Q ss_pred ----------CC-CCCCc---eEeecCCCChhhHHHHHHhc-CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Q 025715 89 ----------MA-PIEGV---IQVQGDITNARTAEVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV 153 (249)
Q Consensus 89 ----------~~-~~~~v---~~~~gDi~~~~~~~~i~~~~-~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a 153 (249)
++ .+.+. ....||+.+......+.... ..++||+|++||+.+++|....++..+..|..+....|
T Consensus 181 ~~~mi~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~A 260 (696)
T KOG3674|consen 181 CFDMIIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVA 260 (696)
T ss_pred HHHHhccchhhhccccceeeCCCCCccHHHHHHHHHHHHHHHhhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHH
Confidence 11 12221 12468887765544443311 12689999999999999999889988999999999999
Q ss_pred HHhccCCCEEEEEEecCC--CHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhCCCC
Q 025715 154 THVLKEGGKFIAKIFRGK--DTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPW 231 (249)
Q Consensus 154 ~~~Lk~gG~lv~k~~~~~--~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (249)
+++|+.||+|++|+|+-. -...+++.+.-.|..|+++||.+||++|+|+|+||.||+++.++ |+++..| ....
T Consensus 261 L~~L~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~~~l-~~Ll~~m----~~~~ 335 (696)
T KOG3674|consen 261 LKLLRRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDHPDL-PRLLGSM----NMDI 335 (696)
T ss_pred HHHHhcCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccCCCCCceEEEEecccCCCccc-hhhhhhh----hccc
Confidence 999999999999999743 35678899999999999999999999999999999999887643 4455554 3333
Q ss_pred CCCCCccccCceEE
Q 025715 232 GGEDQGQCACNIHY 245 (249)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (249)
+ +++--+|++-|.
T Consensus 336 ~-nd~~~~~LF~~~ 348 (696)
T KOG3674|consen 336 S-NDTLVMPLFAKF 348 (696)
T ss_pred c-cchhhccccccc
Confidence 3 666777777665
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=123.22 Aligned_cols=141 Identities=20% Similarity=0.305 Sum_probs=109.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
....+|||||||.|..+..++++.. ..+|++||+++.. .+ ++++++++|+.+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~-------------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~- 108 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTE-------------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL- 108 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCC-------------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh-
Confidence 3478999999999999999999864 4899999999832 12 47899999998743
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCC-CcCHHH-HHH-----HHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHH
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFV-QSQ-----LILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~-~~~~~~-~~~-----l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l 180 (249)
+.....+||+|+||++....+.. +.++.. .++ ..++.++.|.++||+||.|.+ ++++++..+++..+
T Consensus 109 -----~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~~l 182 (248)
T COG4123 109 -----KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIELL 182 (248)
T ss_pred -----hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHHHH
Confidence 23344579999999976555544 333222 111 247789999999999999998 88999999999988
Q ss_pred hcC---CCeeEEecCCCCCCCCc
Q 025715 181 KLF---FPVVTFAKPKSSRNSSI 200 (249)
Q Consensus 181 ~~~---f~~v~~~kP~~sr~~s~ 200 (249)
+++ .+++.++.|...+++..
T Consensus 183 ~~~~~~~k~i~~V~p~~~k~A~~ 205 (248)
T COG4123 183 KSYNLEPKRIQFVYPKIGKAANR 205 (248)
T ss_pred HhcCCCceEEEEecCCCCCcceE
Confidence 874 57889999999888774
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.1e-14 Score=119.12 Aligned_cols=105 Identities=25% Similarity=0.373 Sum_probs=83.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||+|||||-++..+++..+ .++|+++|+++.. ...+++++.||..+++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-- 114 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-- 114 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--
Confidence 4799999999999999999999875 5899999999832 1234889999998875
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
|++.+||+|++.- |.+|.+. ...+|+++.|+|||||.++|..+..+....+
T Consensus 115 ------f~D~sFD~vt~~f-----glrnv~d------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 115 ------FPDNSFDAVTISF-----GLRNVTD------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred ------CCCCccCEEEeee-----hhhcCCC------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence 6889999999853 4455443 2468999999999999999988866554433
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-14 Score=122.36 Aligned_cols=117 Identities=26% Similarity=0.418 Sum_probs=73.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||.++..++++.+ +.++|+++|+++.. ...+++++++|..+.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~------------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-- 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVG------------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-- 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---------------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCC------------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--
Confidence 6789999999999999999988876 46899999999832 1347899999999865
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCee
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v 187 (249)
+++++||+|++-. |.++... ...++.++.|+|||||++++..+..+....+...+..|++.+
T Consensus 112 ------~~d~sfD~v~~~f-----glrn~~d------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i 173 (233)
T PF01209_consen 112 ------FPDNSFDAVTCSF-----GLRNFPD------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI 173 (233)
T ss_dssp ------S-TT-EEEEEEES------GGG-SS------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----
T ss_pred ------CCCCceeEEEHHh-----hHHhhCC------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc
Confidence 4678999999754 3333322 135789999999999999988886655444444455566643
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=118.36 Aligned_cols=124 Identities=20% Similarity=0.149 Sum_probs=88.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++.++++.++ +.+.|+|+|+++.+ .+.++.++++|..+...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~------------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMK------------NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA- 136 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcC------------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-
Confidence 5789999999999999999999885 45799999999842 13457777888654321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH--------H---HHHHHHHHHHHHHHHhccCCCEEEEEEec--CCCHH-
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE--------F---VQSQLILAGLTVVTHVLKEGGKFIAKIFR--GKDTS- 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~--------~---~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~--~~~~~- 174 (249)
...+||+|++|+++...|....++ . ....++..+|..|.++|||||.+|..+++ .++.+
T Consensus 137 -------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~ 209 (264)
T TIGR00446 137 -------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEA 209 (264)
T ss_pred -------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHH
Confidence 124699999999776665432221 1 12346678999999999999999988774 23333
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.++++.+
T Consensus 210 vv~~~l~~~ 218 (264)
T TIGR00446 210 VVDYLLEKR 218 (264)
T ss_pred HHHHHHHhC
Confidence 344566654
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=124.60 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=92.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+||||||.|.+++..++ ..+.|+|+|+++.+ .+.++...+.|.....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~------------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMN------------NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--
Confidence 5889999999999999999999986 46899999999743 2355666677765432
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH-----------HHHHHHHHHHHHHHHHhccCCCEEEEEEec--C-CCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR--G-KDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~-----------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~--~-~~~~ 174 (249)
+.+ ...||.|+.|++++..|....++ .....++..+|..|.++|||||.||..+++ + ++..
T Consensus 178 ----~~~-~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~ 252 (470)
T PRK11933 178 ----AAL-PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQA 252 (470)
T ss_pred ----hhc-hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHH
Confidence 122 25799999999887777533322 123557889999999999999999998875 2 3334
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.++++++
T Consensus 253 vV~~~L~~~ 261 (470)
T PRK11933 253 VCLWLKETY 261 (470)
T ss_pred HHHHHHHHC
Confidence 455677665
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-13 Score=123.38 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=91.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+.+.++++.++ +.++|+|+|+++.+ .+.++++.++|..+...
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~------------~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMK------------DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-
Confidence 5789999999999999999999875 45899999999842 13457788888875421
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH-----------HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~-----------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
+..++||.|++|+++...|....+. .....++..++..+.++|||||.+++.+++ .++..
T Consensus 303 ------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~ 376 (431)
T PRK14903 303 ------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTE 376 (431)
T ss_pred ------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHH
Confidence 1235799999999876666422111 112346788999999999999999998885 23344
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.+++.++
T Consensus 377 vv~~fl~~~ 385 (431)
T PRK14903 377 VVKRFVYEQ 385 (431)
T ss_pred HHHHHHHhC
Confidence 555666654
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=121.14 Aligned_cols=128 Identities=18% Similarity=0.139 Sum_probs=91.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++.++++.++ +.++|+|+|+++.+ .+.+++++++|..+....
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~------------~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMG------------DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhC------------CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 5789999999999999999999875 45799999999742 235678888998764210
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCC--CcC------HH---HHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLH--DMD------EF---VQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~--~~~------~~---~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
. .+..++||.|++|++++..|.. +.+ +. ....++..++..+.++|||||.||+.++. .++..
T Consensus 319 ---~-~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~ 394 (434)
T PRK14901 319 ---K-PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEA 394 (434)
T ss_pred ---c-ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHH
Confidence 0 0123589999999876654532 111 11 12345788999999999999999977664 34555
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+..+++++
T Consensus 395 ~v~~~l~~~ 403 (434)
T PRK14901 395 QIEQFLARH 403 (434)
T ss_pred HHHHHHHhC
Confidence 676777765
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=111.47 Aligned_cols=124 Identities=17% Similarity=0.108 Sum_probs=85.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----C----CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----~----~~~~v~~~~gDi~~~~~~~ 109 (249)
++++.+|||||||||.|++++++.++ +.+.|+|||+++. . ..+|+.++.+|++.+....
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG------------~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVG------------PEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhC------------CCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh
Confidence 47999999999999999999999986 4689999999962 1 1368889999988643211
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec-----CCCHHHH----HHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-----GKDTSLL----YCQL 180 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-----~~~~~~l----~~~l 180 (249)
. ...+||+|++|++. .++. ..++..+.++|||||.|++++-. .+...++ ...|
T Consensus 198 ----~-~~~~vDvV~~Dva~-------pdq~------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 198 ----M-LVPMVDVIFADVAQ-------PDQA------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKL 259 (293)
T ss_pred ----c-ccCCCCEEEEeCCC-------cchH------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHH
Confidence 1 12479999999842 1221 12345688999999999985431 2223333 2445
Q ss_pred hcC-CCeeEEecC
Q 025715 181 KLF-FPVVTFAKP 192 (249)
Q Consensus 181 ~~~-f~~v~~~kP 192 (249)
+.. |+.++.+..
T Consensus 260 ~~~GF~~~e~v~L 272 (293)
T PTZ00146 260 KKEGLKPKEQLTL 272 (293)
T ss_pred HHcCCceEEEEec
Confidence 544 887766543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-13 Score=124.38 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=91.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||||+++.++++.++ +.++|+|+|+++.+ .+.+++++++|+.+..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~------------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-- 314 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLK------------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-- 314 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--
Confidence 5688999999999999999998874 35899999999742 2345788899987642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--------cCH---HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--------MDE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--------~~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
..+. ++||+|++|+++...|... ..+ .....++..++..+.++|||||.|++.++. .++..
T Consensus 315 ----~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~ 389 (444)
T PRK14902 315 ----EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEE 389 (444)
T ss_pred ----chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHH
Confidence 1123 5799999998655444311 111 122345678899999999999999966553 34444
Q ss_pred HHHHHHhcC--CCeeEE
Q 025715 175 LLYCQLKLF--FPVVTF 189 (249)
Q Consensus 175 ~l~~~l~~~--f~~v~~ 189 (249)
.+...++++ |+.+.+
T Consensus 390 vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 390 VIEAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHHHhCCCcEEecc
Confidence 555666653 544443
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-12 Score=114.95 Aligned_cols=128 Identities=24% Similarity=0.290 Sum_probs=91.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|+||||.|.++++.+.. ....|+|+|+++.+ .+.++..+..|.......
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~-----------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMEN-----------EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCC-----------CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 68999999999999999999999861 23566999999843 234555666665432210
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--------cCH---HHHHHHHHHHHHHHHHhccCCCEEEEEEec--C-CCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--------MDE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFR--G-KDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--------~~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~--~-~~~~ 174 (249)
.....+||.|+.|.+++..|... ... .....++..+|..|.++|||||.||..+++ + ++..
T Consensus 224 -----~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~ 298 (355)
T COG0144 224 -----LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE 298 (355)
T ss_pred -----ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH
Confidence 11223699999999888777532 121 224567899999999999999999988885 3 3445
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.+++++.
T Consensus 299 vV~~~L~~~ 307 (355)
T COG0144 299 VVERFLERH 307 (355)
T ss_pred HHHHHHHhC
Confidence 566777764
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=106.19 Aligned_cols=119 Identities=27% Similarity=0.248 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|..+.+++++.+ ..+|+++|+++.+ .+.+++++..|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-------------~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~---- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-------------DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA---- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-------------CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----
Confidence 667999999999999999998764 4689999999853 134478889998763
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~ 189 (249)
+.+.+||+|+||++.... . .....+....+..|.++|+|||.|++-.-+......+ +++.|..+.+
T Consensus 94 -----~~~~~fD~Iv~NPP~~~~-~-----~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~ 159 (170)
T PF05175_consen 94 -----LPDGKFDLIVSNPPFHAG-G-----DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEV 159 (170)
T ss_dssp -----CCTTCEEEEEE---SBTT-S-----HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EE
T ss_pred -----ccccceeEEEEccchhcc-c-----ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEE
Confidence 345799999999864322 1 1123445678899999999999998844455555555 5666877776
Q ss_pred e
Q 025715 190 A 190 (249)
Q Consensus 190 ~ 190 (249)
+
T Consensus 160 ~ 160 (170)
T PF05175_consen 160 V 160 (170)
T ss_dssp E
T ss_pred E
Confidence 5
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=118.01 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=87.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~-~v~~~~gDi~~~~~ 107 (249)
.+|.+|||+|||||+++.++++.++ .++|+|+|+++.+. +. .+....+|..+...
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 5789999999999999999998874 47999999998431 12 12235666654321
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCC--c------CH---HHHHHHHHHHHHHHHHhccCCCEEEEEEecC---CCH
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHD--M------DE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDT 173 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~--~------~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~~ 173 (249)
....++||.|++|++++..|... . .. .....++..+|..|.++|||||.||+.+++- ++.
T Consensus 304 ------~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene 377 (426)
T TIGR00563 304 ------WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS 377 (426)
T ss_pred ------cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH
Confidence 11346899999999877666421 1 11 1234467889999999999999999887753 455
Q ss_pred HHHHHHHhcC
Q 025715 174 SLLYCQLKLF 183 (249)
Q Consensus 174 ~~l~~~l~~~ 183 (249)
..+..+++++
T Consensus 378 ~~v~~~l~~~ 387 (426)
T TIGR00563 378 EQIKAFLQEH 387 (426)
T ss_pred HHHHHHHHhC
Confidence 5566677654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=118.37 Aligned_cols=123 Identities=22% Similarity=0.246 Sum_probs=89.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||+|||||+++.++++.++ ..++|+|+|+++.+ .+.+++++++|..+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQ------------NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhC------------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--
Confidence 5789999999999999999998875 35799999999842 1345788889987632
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--------cCHHH---HHHHHHHHHHHHHHhccCCCEEEEEEecC---CCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--------MDEFV---QSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--------~~~~~---~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~~~ 174 (249)
...+||+|++|+++...|... .+... ...++..++..+.++|||||.+++.+++- ++..
T Consensus 315 -------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~ 387 (445)
T PRK14904 315 -------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENEL 387 (445)
T ss_pred -------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHH
Confidence 235799999998766555421 11111 23456788999999999999999988753 2334
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+..+++++
T Consensus 388 ~v~~~l~~~ 396 (445)
T PRK14904 388 QIEAFLQRH 396 (445)
T ss_pred HHHHHHHhC
Confidence 455667654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=113.64 Aligned_cols=168 Identities=20% Similarity=0.178 Sum_probs=112.4
Q ss_pred hhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-C
Q 025715 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-G 94 (249)
Q Consensus 27 ~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~ 94 (249)
-|+-.+.++++ ++||++|||+|||.|+.+.+++++.+ .+|+|+++|+.. .++ +
T Consensus 59 ~k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~--------------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~ 123 (283)
T COG2230 59 AKLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG--------------VTVVGVTLSEEQLAYAEKRIAARGLEDN 123 (283)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC--------------CEEEEeeCCHHHHHHHHHHHHHcCCCcc
Confidence 34555566665 58999999999999999999999875 799999999842 233 6
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCH-
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT- 173 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~- 173 (249)
++++..|..+.+ +.||.|+|-+.+...|..+.+ ..+..+.++|+|||.+++......+.
T Consensus 124 v~v~l~d~rd~~-----------e~fDrIvSvgmfEhvg~~~~~---------~ff~~~~~~L~~~G~~llh~I~~~~~~ 183 (283)
T COG2230 124 VEVRLQDYRDFE-----------EPFDRIVSVGMFEHVGKENYD---------DFFKKVYALLKPGGRMLLHSITGPDQE 183 (283)
T ss_pred cEEEeccccccc-----------cccceeeehhhHHHhCcccHH---------HHHHHHHhhcCCCceEEEEEecCCCcc
Confidence 777777877642 459999999988877765544 45788999999999999877643321
Q ss_pred --HHHHHHHhcCCCeeEEecCCCCCCC--Cce-EEEEEeeccCCCCCCchhhhHhHHhhCCCCC
Q 025715 174 --SLLYCQLKLFFPVVTFAKPKSSRNS--SIE-AFAVCENYFPPEGFNPKDLHRLLEKVGSPWG 232 (249)
Q Consensus 174 --~~l~~~l~~~f~~v~~~kP~~sr~~--s~E-~y~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (249)
....++.+-.|..-.+ |..+... .++ .+.|..--..+.+|..+ |+.|-++|++.|+
T Consensus 184 ~~~~~~~i~~yiFPgG~l--Ps~~~i~~~~~~~~~~v~~~~~~~~hYa~T-l~~W~~~f~~~~~ 244 (283)
T COG2230 184 FRRFPDFIDKYIFPGGEL--PSISEILELASEAGFVVLDVESLRPHYART-LRLWRERFEANRD 244 (283)
T ss_pred cccchHHHHHhCCCCCcC--CCHHHHHHHHHhcCcEEehHhhhcHHHHHH-HHHHHHHHHHHHH
Confidence 2222222323432221 2111100 112 23444444446777775 7899999988776
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-12 Score=112.95 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=94.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.||||+||+|||.+.+++..|. ..|.|+|.|.+..+ ...|....+.|....+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMk------------n~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~- 306 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMK------------NTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE- 306 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHc------------CCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-
Confidence 6799999999999999999999997 67999999998743 13454455666654321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH-----------HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~-----------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
+.+.+ +||.|+.|++++.+|.-..++ .....|++..|..|..++++||.||..+++ .++..
T Consensus 307 ----~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 307 ----KEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred ----cccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 12454 899999999887766533322 112447889999999999999999988874 34555
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+-++|+++
T Consensus 382 vV~yaL~K~ 390 (460)
T KOG1122|consen 382 VVDYALKKR 390 (460)
T ss_pred HHHHHHHhC
Confidence 677888874
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-12 Score=117.23 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=89.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C----CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~----~~v~~~~gDi~~~~~~~ 109 (249)
.+|.+|||+|||||+++.+++++++ .+.|+|+|+++... . .+++++++|+.+...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~-------------~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-- 307 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP-------------QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-- 307 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh--
Confidence 5789999999999999999998864 37999999998431 0 135778899876421
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCC--------cCHH---HHHHHHHHHHHHHHHhccCCCEEEEEEe---cCCCHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHD--------MDEF---VQSQLILAGLTVVTHVLKEGGKFIAKIF---RGKDTSL 175 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~--------~~~~---~~~~l~~~~l~~a~~~Lk~gG~lv~k~~---~~~~~~~ 175 (249)
.+..++||.|++|+++...|... .... ....++..++..+.++|||||.+++.++ ..++...
T Consensus 308 ----~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~ 383 (427)
T PRK10901 308 ----WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQ 383 (427)
T ss_pred ----hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHH
Confidence 12346899999999766555321 1111 1234567889999999999999997766 3455666
Q ss_pred HHHHHhcC
Q 025715 176 LYCQLKLF 183 (249)
Q Consensus 176 l~~~l~~~ 183 (249)
+...++++
T Consensus 384 v~~~l~~~ 391 (427)
T PRK10901 384 IKAFLARH 391 (427)
T ss_pred HHHHHHhC
Confidence 66677654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-12 Score=95.02 Aligned_cols=97 Identities=26% Similarity=0.334 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCC-CChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDI-TNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi-~~~~~ 107 (249)
|+.+|||||||+|.++..++++.+ ..+|+|+|+++.. ..++++++++|+ ...+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-------------GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-------------TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-
Confidence 678999999999999999998553 5899999999832 136899999999 2221
Q ss_pred HHHHHHhcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....||+|++++ .... ..+. +.....+..+.+.|+|||.|++..
T Consensus 67 --------~~~~~D~v~~~~~~~~~-----~~~~---~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 --------FLEPFDLVICSGFTLHF-----LLPL---DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp --------TSSCEEEEEECSGSGGG-----CCHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------cCCCCCEEEECCCcccc-----ccch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 235799999987 2110 1111 223457888899999999999864
|
... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=111.61 Aligned_cols=86 Identities=33% Similarity=0.397 Sum_probs=69.7
Q ss_pred ccchhhhhhHHhhhhhcC-------cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-
Q 025715 20 GWRARSAFKLLQIDEEFN-------IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP- 91 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~-------~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~- 91 (249)
+-+|||++||.|+...|. .+.+|+++|||||+|||||+.+.++ + .+|+|||..++.+
T Consensus 183 ~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G--------------~~V~AVD~g~l~~~ 247 (357)
T PRK11760 183 DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-G--------------MFVTAVDNGPMAQS 247 (357)
T ss_pred CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-C--------------CEEEEEechhcCHh
Confidence 567999999999966664 4689999999999999999999976 3 5999999998763
Q ss_pred ---CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 92 ---IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 92 ---~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
.++|....+|...... ..+.+|+|+||+.
T Consensus 248 L~~~~~V~h~~~d~fr~~p--------~~~~vDwvVcDmv 279 (357)
T PRK11760 248 LMDTGQVEHLRADGFKFRP--------PRKNVDWLVCDMV 279 (357)
T ss_pred hhCCCCEEEEeccCcccCC--------CCCCCCEEEEecc
Confidence 3678888887655321 1468999999985
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-11 Score=101.10 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=83.7
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
+++|.+|||+|||||.++.++++..+ .+.|+|+|+++.. ..+++.++.+|+.++....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-------------~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-------------EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA 136 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-------------CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh
Confidence 47899999999999999999998874 4799999999831 2367889999998642111
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe------cCCC---HHHHHHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF------RGKD---TSLLYCQL 180 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~------~~~~---~~~l~~~l 180 (249)
.+. .+||+|++|+.. .+. ...++..+.++|||||.+++.+. ..+. ..+....+
T Consensus 137 ----~l~-~~~D~i~~d~~~-------p~~------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l 198 (226)
T PRK04266 137 ----HVV-EKVDVIYQDVAQ-------PNQ------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKL 198 (226)
T ss_pred ----hcc-ccCCEEEECCCC-------hhH------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHH
Confidence 123 469999998641 111 12357888999999999999433 1111 12233445
Q ss_pred hcC-CCeeEEec
Q 025715 181 KLF-FPVVTFAK 191 (249)
Q Consensus 181 ~~~-f~~v~~~k 191 (249)
+.. |+.+...-
T Consensus 199 ~~aGF~~i~~~~ 210 (226)
T PRK04266 199 EEGGFEILEVVD 210 (226)
T ss_pred HHcCCeEEEEEc
Confidence 443 88777654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=102.04 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=76.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++..+ +.++|+++|+++.. ..++++++.+|+.+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 109 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVG------------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-- 109 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--
Confidence 5789999999999999999998875 45799999998632 1356888889987642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~ 175 (249)
+..++||+|+++...... .+. ..++..+.++|+|||.+++......+...
T Consensus 110 ------~~~~~fD~V~~~~~l~~~----~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 159 (231)
T TIGR02752 110 ------FDDNSFDYVTIGFGLRNV----PDY-------MQVLREMYRVVKPGGKVVCLETSQPTIPG 159 (231)
T ss_pred ------CCCCCccEEEEecccccC----CCH-------HHHHHHHHHHcCcCeEEEEEECCCCCChH
Confidence 345789999987543221 111 24678889999999999975554444333
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=102.84 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC---CCceEeecCCCChh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI---EGVIQVQGDITNAR 106 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~---~~v~~~~gDi~~~~ 106 (249)
+++++||+|+|+|-.+..+.+......+. .+++|+.+|++|.. ++ ..+.++.+|..+++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~-------~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGD-------RESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCC-------CCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 57999999999999999998887632221 34799999999842 12 23889999998875
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPV 186 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~ 186 (249)
|++.++|..+.-. |++|..+. ..++++|+|+|||||+|.|-.|...+...+.++..+++..
T Consensus 173 --------Fdd~s~D~yTiaf-----GIRN~th~------~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 173 --------FDDDSFDAYTIAF-----GIRNVTHI------QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred --------CCCCcceeEEEec-----ceecCCCH------HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 5788999998743 45555542 4689999999999999999999887777888888888776
Q ss_pred e
Q 025715 187 V 187 (249)
Q Consensus 187 v 187 (249)
|
T Consensus 234 V 234 (296)
T KOG1540|consen 234 V 234 (296)
T ss_pred h
Confidence 6
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=106.02 Aligned_cols=102 Identities=24% Similarity=0.357 Sum_probs=78.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C------CCCceEeecCCCCh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P------IEGVIQVQGDITNA 105 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~------~~~v~~~~gDi~~~ 105 (249)
.++.+|||+|||+|.++..+++..+ +.++|+|+|+++.. . .++++++++|+.+.
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~------------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVG------------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 5788999999999999998888765 35799999999732 0 23678899998775
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+ +++++||+|++....... .+. ..++..+.++|||||.+++..+..++
T Consensus 140 p--------~~~~sfD~V~~~~~l~~~----~d~-------~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 140 P--------FDDCYFDAITMGYGLRNV----VDR-------LKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred C--------CCCCCEeEEEEecccccC----CCH-------HHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 4 456789999987653321 121 35788999999999999998776544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=100.08 Aligned_cols=133 Identities=21% Similarity=0.227 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+.+|||+|||+|.++..+++..+ ...++++|+++.. .+.+++++++|+.+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-------------~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-------------DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----
Confidence 456999999999999999998764 4699999999732 134678889998652
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCC-cCHH--------------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHD-MDEF--------------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~-~~~~--------------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~ 174 (249)
+..++||+|++|++....+... .... .........+..+.++|+|||.+++.. ......
T Consensus 150 -----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~ 223 (251)
T TIGR03534 150 -----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYDQGE 223 (251)
T ss_pred -----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-CccHHH
Confidence 2356899999998643222110 0000 012234567889999999999999854 223344
Q ss_pred HHHHHHhc-CCCeeEEecCCCCC
Q 025715 175 LLYCQLKL-FFPVVTFAKPKSSR 196 (249)
Q Consensus 175 ~l~~~l~~-~f~~v~~~kP~~sr 196 (249)
.+...+++ -|..+.+.+...++
T Consensus 224 ~~~~~l~~~gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 224 AVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred HHHHHHHhCCCCceEEEeCCCCC
Confidence 55555554 48888888776654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=99.20 Aligned_cols=140 Identities=21% Similarity=0.178 Sum_probs=94.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++...+ ...|+++|+++.. ...++.++.+|+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-------------~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~--- 170 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-------------DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP--- 170 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc---
Confidence 3567999999999999999998763 5799999999742 124688889998653
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC-c-CH-------------HHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD-M-DE-------------FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~-~-~~-------------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~ 173 (249)
+..++||+|++|++....+... . ++ ......+..++..+.++|+|||.+++.+ .....
T Consensus 171 ------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~ 243 (275)
T PRK09328 171 ------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQG 243 (275)
T ss_pred ------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHH
Confidence 1246899999997532221100 0 00 0123456778889999999999999854 22223
Q ss_pred HHHHHHHhc-CCCeeEEecCCCCCCCCceEEEEE
Q 025715 174 SLLYCQLKL-FFPVVTFAKPKSSRNSSIEAFAVC 206 (249)
Q Consensus 174 ~~l~~~l~~-~f~~v~~~kP~~sr~~s~E~y~v~ 206 (249)
..+...+.. -|..+.+++....+ ++++++
T Consensus 244 ~~~~~~l~~~gf~~v~~~~d~~~~----~r~~~~ 273 (275)
T PRK09328 244 EAVRALLAAAGFADVETRKDLAGR----DRVVLG 273 (275)
T ss_pred HHHHHHHHhCCCceeEEecCCCCC----ceEEEE
Confidence 345555543 48888888766654 455654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-11 Score=95.80 Aligned_cols=100 Identities=22% Similarity=0.331 Sum_probs=75.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+.+.+|||+|||+|.++..+++.++ +..+++|+|+++.. .+++++++++|+.+.+.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~------------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~- 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN------------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQ- 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST------------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCG-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC------------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccc-
Confidence 4578999999999999999997654 45899999999832 24689999999998531
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+. +.||+|++++.+... .+. ...+..+.++|++||.+++..+.
T Consensus 69 -----~~~-~~~D~I~~~~~l~~~----~~~-------~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 69 -----ELE-EKFDIIISNGVLHHF----PDP-------EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -----CSS-TTEEEEEEESTGGGT----SHH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----ccC-CCeeEEEEcCchhhc----cCH-------HHHHHHHHHHcCCCcEEEEEECC
Confidence 122 689999998765321 111 24678899999999999987665
|
... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=95.44 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..++... +.++|+|+|+++.. .+++++++++|+.+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-------------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-------------PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-------------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---
Confidence 37899999999999999887654 35789999999831 2457889999986631
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
..++||+|++++. .+. ...+..+.++|+|||.+++. .......++....++
T Consensus 106 ------~~~~fD~I~s~~~------~~~---------~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 106 ------HEEQFDVITSRAL------ASL---------NVLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK 156 (181)
T ss_pred ------ccCCccEEEehhh------hCH---------HHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence 2468999999751 111 23566778999999999984 455556666665554
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-11 Score=106.06 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=72.8
Q ss_pred hHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCc
Q 025715 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGV 95 (249)
Q Consensus 28 KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v 95 (249)
|+..+.++.+ +++|.+|||+|||.|+++.+++++.+ ++|+|+++++.. .+ ..+
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g--------------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG--------------CHVTGITLSEEQAEYARERIREAGLEDRV 114 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH----------------EEEEEES-HHHHHHHHHHHHCSTSSSTE
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC--------------cEEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 3444455554 58999999999999999999999875 799999999732 22 357
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
++..+|..+. . .+||.|+|-+.+...|..+. ...+..+.++|||||.+++..+.
T Consensus 115 ~v~~~D~~~~----------~-~~fD~IvSi~~~Ehvg~~~~---------~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 115 EVRLQDYRDL----------P-GKFDRIVSIEMFEHVGRKNY---------PAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EEEES-GGG--------------S-SEEEEESEGGGTCGGGH---------HHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEEEeecccc----------C-CCCCEEEEEechhhcChhHH---------HHHHHHHHHhcCCCcEEEEEecc
Confidence 7778887653 2 38999999887665554332 24678899999999999987664
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-11 Score=105.54 Aligned_cols=126 Identities=25% Similarity=0.264 Sum_probs=90.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||+||||||.+.++++.+. ..+.|+|+|+++.+ ...++.....|.+...
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~------------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~-- 149 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMG------------NKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD-- 149 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTT------------TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH--
T ss_pred cccccccccccCCCCceeeeeeccc------------chhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc--
Confidence 5789999999999999999999986 57899999999843 1345555555654432
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--cC---------HHHHHHHHHHHHHHHHHhc----cCCCEEEEEEec---C
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--MD---------EFVQSQLILAGLTVVTHVL----KEGGKFIAKIFR---G 170 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--~~---------~~~~~~l~~~~l~~a~~~L----k~gG~lv~k~~~---~ 170 (249)
.......||.|+.|.+++..|... .+ ......++..+|..|.+++ ||||.+|..+++ .
T Consensus 150 ----~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 150 ----PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp ----HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred ----ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 111234699999999877665322 11 1223557889999999999 999999998884 3
Q ss_pred CCHHHHHHHHhcC
Q 025715 171 KDTSLLYCQLKLF 183 (249)
Q Consensus 171 ~~~~~l~~~l~~~ 183 (249)
++...+..+++++
T Consensus 226 ENE~vV~~fl~~~ 238 (283)
T PF01189_consen 226 ENEEVVEKFLKRH 238 (283)
T ss_dssp GTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 4455566677764
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-11 Score=101.00 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++.+|||+|||+|.++..+++. + ..|+++|+++.. ......++++|+.+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-------- 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-G--------------SQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-------- 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc--------
Confidence 5679999999999999888753 2 689999999842 1233467888887643
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHH
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~ 179 (249)
+.+++||+|+|+.+..+. .+. ..++..+.++|+|||.+++.++......++...
T Consensus 99 ~~~~~fD~V~s~~~l~~~----~d~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~ 152 (251)
T PRK10258 99 LATATFDLAWSNLAVQWC----GNL-------STALRELYRVVRPGGVVAFTTLVQGSLPELHQA 152 (251)
T ss_pred CCCCcEEEEEECchhhhc----CCH-------HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence 345789999998765432 121 356788899999999999987765555554443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=104.79 Aligned_cols=96 Identities=25% Similarity=0.299 Sum_probs=73.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
+++.+|||+|||+|.++..++++.+ ++|+|+|+++.. .+ ++++++.+|+.+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--------------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--------------ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-
Confidence 5678999999999999999998754 799999999742 12 36889999998753
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|++..+.... .+. ...+..+.++|||||.|++..+
T Consensus 182 -------~~~~~FD~V~s~~~~~h~----~d~-------~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 -------FEDGQFDLVWSMESGEHM----PDK-------RKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -------CCCCCccEEEECCchhcc----CCH-------HHHHHHHHHHcCCCcEEEEEEe
Confidence 356799999997643221 121 2467888999999999998665
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-10 Score=102.45 Aligned_cols=144 Identities=16% Similarity=0.073 Sum_probs=96.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------C-CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~-~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..++...+ ..+|+|+|+++.+. . .+++++++|+.+...
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p-------------~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l-- 314 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP-------------DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM-- 314 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--
Confidence 4567999999999999998887653 57999999998431 1 257889999865321
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCc-------CHHH-------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDM-------DEFV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~-------~~~~-------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~ 175 (249)
...++||+|+||++....+.... ++.. ....++.++..+.+.|+|||.+++.+- ......
T Consensus 315 -----~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~~Q~e~ 388 (423)
T PRK14966 315 -----PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-FDQGAA 388 (423)
T ss_pred -----ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-ccHHHH
Confidence 01357999999985322211100 1111 133467788889999999999987542 233445
Q ss_pred HHHHHhc-CCCeeEEecCCCCCCCCceEEEEEee
Q 025715 176 LYCQLKL-FFPVVTFAKPKSSRNSSIEAFAVCEN 208 (249)
Q Consensus 176 l~~~l~~-~f~~v~~~kP~~sr~~s~E~y~v~~g 208 (249)
+..+++. -|..+.+.+..+.+ +++++++.
T Consensus 389 V~~ll~~~Gf~~v~v~kDl~G~----dR~v~~~~ 418 (423)
T PRK14966 389 VRGVLAENGFSGVETLPDLAGL----DRVTLGKY 418 (423)
T ss_pred HHHHHHHCCCcEEEEEEcCCCC----cEEEEEEE
Confidence 5555554 38888888877766 57787653
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-11 Score=89.89 Aligned_cols=103 Identities=21% Similarity=0.267 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~~ 109 (249)
|.+|||+|||+|.++.++++.. ..+++++|+++.. .. .+++++++|+.+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--------------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--- 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--------------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--- 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--------------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH---
T ss_pred CCEEEEcCcchHHHHHHHHHHC--------------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch---
Confidence 5799999999999999998875 2699999999843 12 45788999986532
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+..++||+|++|++..... .+.....++....++.+.++|+|||.+++.+
T Consensus 64 ---~~~~~~~~D~Iv~npP~~~~~---~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 64 ---EPLPDGKFDLIVTNPPYGPRS---GDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---HTCTTT-EEEEEE--STTSBT---T----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hhccCceeEEEEECCCCcccc---ccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 235668999999998653221 1111111244567889999999999999854
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-11 Score=102.56 Aligned_cols=96 Identities=26% Similarity=0.313 Sum_probs=73.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.++.+|||+|||+|.++..++++.+ .++|+|+|+++.. .-.+++++++|+.+..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------- 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-------------GAVIEALDSSPEMVAAARERGVDARTGDVRDWK--------- 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC---------
Confidence 4678999999999999999988763 4799999999843 1246888889876431
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..++||+|+++....+. .+. ..++..+.++|||||.|++.+.
T Consensus 86 ~~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 86 PKPDTDVVVSNAALQWV----PEH-------ADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCCceEEEEehhhhhC----CCH-------HHHHHHHHHhCCCCcEEEEEcC
Confidence 24689999998765432 122 2467788999999999998654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=104.02 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------------CCCceEeecCCCChhh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------------IEGVIQVQGDITNART 107 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------------~~~v~~~~gDi~~~~~ 107 (249)
+.+|||||||+|.++..++++.+ ..+|+++|+++++. ..+++++.+|..+.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-------------~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-- 293 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-------------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-- 293 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence 35999999999999999998764 57999999998531 12456777776542
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCee
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v 187 (249)
+.+.+||+|+||+++... .. ... ......+..+.++|+|||.|.+..-+..... ..+++.|..+
T Consensus 294 -------~~~~~fDlIlsNPPfh~~-~~-~~~----~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~---~~L~~~fg~~ 357 (378)
T PRK15001 294 -------VEPFRFNAVLCNPPFHQQ-HA-LTD----NVAWEMFHHARRCLKINGELYIVANRHLDYF---HKLKKIFGNC 357 (378)
T ss_pred -------CCCCCEEEEEECcCcccC-cc-CCH----HHHHHHHHHHHHhcccCCEEEEEEecCcCHH---HHHHHHcCCc
Confidence 234589999999876432 21 111 2234678889999999999998654443333 3455567766
Q ss_pred EEecCCCCCCCCceEEEEEeecc
Q 025715 188 TFAKPKSSRNSSIEAFAVCENYF 210 (249)
Q Consensus 188 ~~~kP~~sr~~s~E~y~v~~g~~ 210 (249)
..+ ++.-.|+|-+..+
T Consensus 358 ~~v-------a~~~kf~vl~a~k 373 (378)
T PRK15001 358 TTI-------ATNNKFVVLKAVK 373 (378)
T ss_pred eEE-------ccCCCEEEEEEEe
Confidence 653 1112566666555
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=101.46 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=74.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+++|.+|||+|||+|.++..+++..+ ..++|+++|+++.. .+.+++++.+|+.+.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g------------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~- 141 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG------------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP- 141 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-
Confidence 36889999999999999988887765 45789999998732 1357788889886643
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|+++...... .+. ...+..+.++|||||+|++.-+
T Consensus 142 -------~~~~~fD~Vi~~~v~~~~----~d~-------~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 142 -------VADNSVDVIISNCVINLS----PDK-------ERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred -------CCCCceeEEEEcCcccCC----CCH-------HHHHHHHHHHcCCCcEEEEEEe
Confidence 345689999998754432 121 2468889999999999998543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=95.16 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=71.2
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChh
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~ 106 (249)
++.++.+|||+|||+|..+..++...+ .++|+++|+++.. .+++++++++|+.+..
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~-------------~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~ 108 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARP-------------ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG 108 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCC-------------CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC
Confidence 345689999999999999999887643 5899999999732 2346888999886632
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
. .++||+|+++... + ....+..+.++|+|||.+++-..
T Consensus 109 --------~-~~~fDlV~~~~~~--------~-------~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 109 --------Q-EEKFDVVTSRAVA--------S-------LSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred --------C-CCCccEEEEcccc--------C-------HHHHHHHHHHhcCCCeEEEEEeC
Confidence 1 4689999997421 1 12467888999999999998543
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=93.04 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=80.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++++.+ .++|+++|+++.. .+.+++++++|+..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~---- 92 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-------------SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI---- 92 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh----
Confidence 4778999999999999999988753 5799999999732 13467778887632
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc-CCCee
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVV 187 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~-~f~~v 187 (249)
.+ .++||+|++++... . ....+..+.+.|+|||.+++.....++..++...+++ .|+.+
T Consensus 93 -----~~-~~~~D~v~~~~~~~-----~---------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 93 -----EL-PGKADAIFIGGSGG-----N---------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred -----hc-CcCCCEEEECCCcc-----C---------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 12 25799999975321 1 1235677899999999999865555666677766654 36544
Q ss_pred EE
Q 025715 188 TF 189 (249)
Q Consensus 188 ~~ 189 (249)
.+
T Consensus 153 ~~ 154 (187)
T PRK08287 153 DC 154 (187)
T ss_pred eE
Confidence 43
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=98.11 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=93.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~~~ 110 (249)
.+|||+|||+|.++..++...+ ..+|+|+|+++.+ .+. +++++++|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-------------~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----- 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-------------NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----- 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-----
Confidence 6899999999999999998763 4799999999843 122 388899998652
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCC-------CCcCHHH-------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGL-------HDMDEFV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~-------~~~~~~~-------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+...+||+|+||++...... ....... -...+...+..+.++|+|||.+++.+.. .....+
T Consensus 178 ----~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~ 252 (284)
T TIGR00536 178 ----LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSL 252 (284)
T ss_pred ----CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHH
Confidence 23347999999974321110 0011110 1345678899999999999999986642 223344
Q ss_pred HHHHh--cCCCeeEEecCCCCCCCCceEEEEEe
Q 025715 177 YCQLK--LFFPVVTFAKPKSSRNSSIEAFAVCE 207 (249)
Q Consensus 177 ~~~l~--~~f~~v~~~kP~~sr~~s~E~y~v~~ 207 (249)
..++. ..|..+.++|..+.+ +++++++
T Consensus 253 ~~~~~~~~~~~~~~~~~D~~g~----~R~~~~~ 281 (284)
T TIGR00536 253 KELLRIKFTWYDVENGRDLNGK----ERVVLGF 281 (284)
T ss_pred HHHHHhcCCCceeEEecCCCCC----ceEEEEE
Confidence 44444 247888888876665 4666653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=99.86 Aligned_cols=95 Identities=23% Similarity=0.325 Sum_probs=73.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++..+ .++|+|+|+++.. ..+++.++.+|+.+..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~------- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-------------AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ------- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-------
Confidence 5678999999999999999988764 4799999999742 2467888889986532
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
...+||+|+++....+. .+. ..++..+.++|||||.+++.+
T Consensus 90 --~~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 --PPQALDLIFANASLQWL----PDH-------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred --CCCCccEEEEccChhhC----CCH-------HHHHHHHHHhcCCCcEEEEEC
Confidence 23589999998765432 122 246788899999999999864
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-10 Score=86.12 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=69.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++++.+ .++|+++|+++.. ..++++++.+|+.....
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-------------NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 4678999999999999999998764 4799999998732 13467777888654210
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
. ...+||.|++++... . ....+..+.+.|+|||.|++.+
T Consensus 84 -----~-~~~~~D~v~~~~~~~--------~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 -----D-SLPEPDRVFIGGSGG--------L------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred -----h-hcCCCCEEEECCcch--------h------HHHHHHHHHHHcCCCCEEEEEe
Confidence 1 125899999975321 1 1357889999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-10 Score=97.20 Aligned_cols=121 Identities=20% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCceEeecCCCChhhHHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+.+|||+|||+|.++..+++..+ ..+|+++|+++.+. ..+++++++|+.+.. ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-------------~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l-----~~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-------------GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL-----PT 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc-----ch
Confidence 45899999999999999988764 46899999998431 134678899986531 11
Q ss_pred hcCCCcccEEEeCCCCCCCCCC-CcC-H------H-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH
Q 025715 114 HFDGCKADLVVCDGAPDVTGLH-DMD-E------F-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~-~~~-~------~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~ 178 (249)
.+ .++||+|++|++....+.. ..+ + . .-.+.++..+..+.++|+|||.+++. ........+..
T Consensus 149 ~~-~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~ 226 (251)
T TIGR03704 149 AL-RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVE 226 (251)
T ss_pred hc-CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHH
Confidence 12 2579999999864332211 000 0 0 11334678888999999999999984 44455666777
Q ss_pred HHhc
Q 025715 179 QLKL 182 (249)
Q Consensus 179 ~l~~ 182 (249)
.++.
T Consensus 227 ~l~~ 230 (251)
T TIGR03704 227 AFAR 230 (251)
T ss_pred HHHH
Confidence 6765
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-10 Score=94.52 Aligned_cols=116 Identities=24% Similarity=0.297 Sum_probs=85.2
Q ss_pred HHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----
Q 025715 17 KEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----- 91 (249)
Q Consensus 17 ~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----- 91 (249)
.+..|+||+++||..+.+.|.+..+|..+||+|+.||||++.++++. ..+|+|+|......
T Consensus 55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--------------Ak~VyavDVG~~Ql~~kLR 120 (245)
T COG1189 55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--------------AKHVYAVDVGYGQLHWKLR 120 (245)
T ss_pred cCcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--------------CcEEEEEEccCCccCHhHh
Confidence 35679999999999999999998999999999999999999999874 37999999987432
Q ss_pred -CCCceEe-ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 92 -IEGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 92 -~~~v~~~-~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
-++|..+ .-|+..... +.+. +..|++++|.++-. ...+|-.+..+++++|.++.-
T Consensus 121 ~d~rV~~~E~tN~r~l~~-----~~~~-~~~d~~v~DvSFIS--------------L~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 121 NDPRVIVLERTNVRYLTP-----EDFT-EKPDLIVIDVSFIS--------------LKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred cCCcEEEEecCChhhCCH-----HHcc-cCCCeEEEEeehhh--------------HHHHHHHHHHhcCCCceEEEE
Confidence 2454433 335544321 1233 37999999986521 123455666777887777653
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=96.16 Aligned_cols=120 Identities=11% Similarity=0.060 Sum_probs=79.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCC-CChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDI-TNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi-~~~~~ 107 (249)
+++.+|||+|||+|.++..+++..+ ...|+|+|+++.. .++++.++++|+ ..
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-------------~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--- 102 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-------------DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV--- 102 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-------------CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHH---
Confidence 3678999999999999999988764 4789999999832 235788899988 32
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCC-CCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~-~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
+...+.+++||+|+++.+..+... .... .......+..+.++|||||.|++.+........+...++.
T Consensus 103 ---l~~~~~~~~~D~V~~~~~~p~~~~~~~~~----~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 171 (202)
T PRK00121 103 ---LLDMFPDGSLDRIYLNFPDPWPKKRHHKR----RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSA 171 (202)
T ss_pred ---HHHHcCccccceEEEECCCCCCCcccccc----ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 222245678999999764322110 0000 0012457888999999999999854333333445554443
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.2e-11 Score=85.10 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=65.2
Q ss_pred EEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHHHHhcCC
Q 025715 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 46 LDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
||+|||+|..+..++++ + ...|+++|+++.. .-.++.+.++|+++.+ +++
T Consensus 1 LdiG~G~G~~~~~l~~~-~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-------------GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP--------FPD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-------------TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS--------S-T
T ss_pred CEecCcCCHHHHHHHhc-c-------------CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCc--------ccc
Confidence 89999999999999987 3 3799999999842 1245668899998875 467
Q ss_pred CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++||+|++.....+. +. ...++..+.|+|||||.+++
T Consensus 59 ~sfD~v~~~~~~~~~-----~~------~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 59 NSFDVVFSNSVLHHL-----ED------PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp T-EEEEEEESHGGGS-----SH------HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccceeec-----cC------HHHHHHHHHHHcCcCeEEeC
Confidence 899999998765432 11 24678999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=99.70 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=71.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+++.+|||+|||+|..+..+++..+ ++|+++|+++.. ...++.+..+|+.+.+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~--------------~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~---- 112 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYG--------------AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD---- 112 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcC--------------CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC----
Confidence 6788999999999999988876543 699999999732 1236888889987642
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+++++||+|++........ .+. ...++..+.++|||||.|++..+
T Consensus 113 ----~~~~~FD~V~s~~~l~h~~---~~d------~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 113 ----FPENTFDMIYSRDAILHLS---YAD------KKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ----CCCCCeEEEEEhhhHHhCC---HHH------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 3557899999954321110 001 23578889999999999998765
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-10 Score=99.45 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=79.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
.++|.+|||.|||+|+++..++. .+ ..++|+|+++.. .++++.+.++|+++.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~-~~--------------~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~- 243 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGL-MG--------------AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP- 243 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHH-hC--------------CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-
Confidence 36889999999999999877654 33 689999999732 1345677889988753
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+..++||+|++|++....... .......+...++..+.++|+|||++++.+....+...+
T Consensus 244 -------~~~~~~D~Iv~dPPyg~~~~~--~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~ 303 (329)
T TIGR01177 244 -------LSSESVDAIATDPPYGRSTTA--AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL 303 (329)
T ss_pred -------cccCCCCEEEECCCCcCcccc--cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence 234689999999764321110 011123456778999999999999999866544454444
|
This family is found exclusively in the Archaea. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=91.07 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=79.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..++...+ +.++|+++|+++.. . ..++.++.+|..+.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~------------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~- 104 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVG------------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI- 104 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-
Confidence 35788999999999999999988765 35799999999732 1 24677788887542
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
.... ..+||+|++++.. . + ....+..+.++|+|||.+++.....+....+...++.
T Consensus 105 -----l~~~-~~~~D~V~~~~~~-----~--~-------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 105 -----LFTI-NEKFDRIFIGGGS-----E--K-------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred -----Hhhc-CCCCCEEEECCCc-----c--c-------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 1112 2579999986521 0 1 1346788899999999999865555556667666654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-10 Score=93.70 Aligned_cols=114 Identities=24% Similarity=0.260 Sum_probs=80.6
Q ss_pred hhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceE
Q 025715 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQ 97 (249)
Q Consensus 25 a~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~ 97 (249)
.+..|.+....... ..+.+|||+|||+|.++..+++..+ ..+++++|+++.. ..+++.+
T Consensus 19 ~~~~l~~~~~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (240)
T TIGR02072 19 MAKRLLALLKEKGI-FIPASVLDIGCGTGYLTRALLKRFP-------------QAEFIALDISAGMLAQAKTKLSENVQF 84 (240)
T ss_pred HHHHHHHHhhhhcc-CCCCeEEEECCCccHHHHHHHHhCC-------------CCcEEEEeChHHHHHHHHHhcCCCCeE
Confidence 44555555444332 2347999999999999999988753 4679999998742 1136788
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
+.+|+.+.+ +.+++||+|+++....+.. +. ...+..+.++|+|||.+++..+...
T Consensus 85 ~~~d~~~~~--------~~~~~fD~vi~~~~l~~~~----~~-------~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 85 ICGDAEKLP--------LEDSSFDLIVSNLALQWCD----DL-------SQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred EecchhhCC--------CCCCceeEEEEhhhhhhcc----CH-------HHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 889887643 2457899999987544321 21 2467888999999999999876443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9e-10 Score=93.48 Aligned_cols=132 Identities=16% Similarity=0.093 Sum_probs=83.9
Q ss_pred hhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------C--CCce
Q 025715 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I--EGVI 96 (249)
Q Consensus 27 ~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~--~~v~ 96 (249)
..|.+...... +.++.+|||+|||+|.++..+++. + ..+|+++|+++... . .+++
T Consensus 23 ~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~~~ 87 (223)
T PRK14967 23 QLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G-------------AGSVTAVDISRRAVRSARLNALLAGVDVD 87 (223)
T ss_pred HHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHhCCeeE
Confidence 44555554444 357789999999999999988864 3 25899999998421 1 1356
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCC---CcCHH-------HHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH---DMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~---~~~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
++++|+.+. +..++||+|++|++....... ..... ....++..++..+.++|||||.+++.
T Consensus 88 ~~~~d~~~~---------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 88 VRRGDWARA---------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred EEECchhhh---------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 777887542 234689999999743221110 00000 11234567788999999999999974
Q ss_pred EecCCCHHHHHHHHhc
Q 025715 167 IFRGKDTSLLYCQLKL 182 (249)
Q Consensus 167 ~~~~~~~~~l~~~l~~ 182 (249)
........+++..++.
T Consensus 159 ~~~~~~~~~~~~~l~~ 174 (223)
T PRK14967 159 QSELSGVERTLTRLSE 174 (223)
T ss_pred EecccCHHHHHHHHHH
Confidence 3333345566655543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=94.42 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=74.0
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEe
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQV 98 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~ 98 (249)
++.+... .++.+|||+|||+|.++..+++. + .+|+++|+++.. . .++++++
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~-g--------------~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~ 98 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL-G--------------HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFI 98 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHhcCCccceEEE
Confidence 4444443 45689999999999999999875 2 689999999732 1 1457888
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
++|+.+.. .+.+++||+|++....... .+. ..++..+.++|||||.+++..+..
T Consensus 99 ~~d~~~l~-------~~~~~~fD~V~~~~vl~~~----~~~-------~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 99 HCAAQDIA-------QHLETPVDLILFHAVLEWV----ADP-------KSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred EcCHHHHh-------hhcCCCCCEEEehhHHHhh----CCH-------HHHHHHHHHHcCCCeEEEEEEECc
Confidence 88886532 1234789999997654321 121 246788899999999999855543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=102.30 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
++.+|||+|||+|.++..++...+ ..+|+|+|+++.+ .+ .+++++++|+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-------------~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-------------NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-------------CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---
Confidence 346899999999999999888764 5799999999742 12 3577788887542
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCC--------CCcCHH-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGL--------HDMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~--------~~~~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~ 173 (249)
+..++||+|+||++...... .+.+.. ..++.+..++..+.++|+|||.+++.+- ....
T Consensus 202 ------~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-~~q~ 274 (506)
T PRK01544 202 ------IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-FKQE 274 (506)
T ss_pred ------CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-CchH
Confidence 23458999999985322111 001111 1234567788899999999999998542 2334
Q ss_pred HHHHHHHhc-CCCeeEEecCCCCCC
Q 025715 174 SLLYCQLKL-FFPVVTFAKPKSSRN 197 (249)
Q Consensus 174 ~~l~~~l~~-~f~~v~~~kP~~sr~ 197 (249)
..+..++.. -|..+.+.+..+.+.
T Consensus 275 ~~v~~~~~~~g~~~~~~~~D~~g~~ 299 (506)
T PRK01544 275 EAVTQIFLDHGYNIESVYKDLQGHS 299 (506)
T ss_pred HHHHHHHHhcCCCceEEEecCCCCc
Confidence 445555543 477788888777764
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=87.63 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..++++. .+|+++|+++... -.+++++.+|+.+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----- 78 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG---------------KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG----- 78 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC---------------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc-----
Confidence 45799999999999999988752 3899999998421 12467788887652
Q ss_pred HHHhcCCCcccEEEeCCCCCCCC-CCCcCHHH---------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTG-LHDMDEFV---------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g-~~~~~~~~---------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l 180 (249)
. .++||+|++|++..... ......+. ...++...+..+.++|+|||.+++.........+++..+
T Consensus 79 ----~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l 153 (179)
T TIGR00537 79 ----V-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKL 153 (179)
T ss_pred ----c-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHH
Confidence 1 35899999997542111 11001110 123456788999999999999998655444466677766
Q ss_pred hcC
Q 025715 181 KLF 183 (249)
Q Consensus 181 ~~~ 183 (249)
++.
T Consensus 154 ~~~ 156 (179)
T TIGR00537 154 DER 156 (179)
T ss_pred HhC
Confidence 654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-10 Score=95.91 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=88.9
Q ss_pred HHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----
Q 025715 16 AKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----- 90 (249)
Q Consensus 16 a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----- 90 (249)
.+.+.-++|-+..|.. +... .+..+|+|||||||.-+.++++|.+ ...|+|+|-++..
T Consensus 9 l~F~~eRtRPa~dLla---~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP-------------~A~i~GiDsS~~Mla~Aa 71 (257)
T COG4106 9 LQFEDERTRPARDLLA---RVPL-ERPRRVVDLGCGPGNSTELLARRWP-------------DAVITGIDSSPAMLAKAA 71 (257)
T ss_pred HHHHHhccCcHHHHHh---hCCc-cccceeeecCCCCCHHHHHHHHhCC-------------CCeEeeccCCHHHHHHHH
Confidence 4455567777766652 2222 3457999999999999999999985 6899999999842
Q ss_pred -CCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 91 -PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 91 -~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+++++|..+|+.+.. +....|++++|.++++. .+|. ..+..-...|.|||.|.+.|-.
T Consensus 72 ~rlp~~~f~~aDl~~w~---------p~~~~dllfaNAvlqWl----pdH~-------~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 72 QRLPDATFEEADLRTWK---------PEQPTDLLFANAVLQWL----PDHP-------ELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred HhCCCCceecccHhhcC---------CCCccchhhhhhhhhhc----cccH-------HHHHHHHHhhCCCceEEEECCC
Confidence 3689999999998754 45689999999987653 4553 3455667899999999998753
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-10 Score=100.57 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=86.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+||.+|||+||+||+.|..+.+.+... ...+.|++.|.++.+ +.++....+.|+...+..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~---------~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~ 224 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKD---------PTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNI 224 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcC---------CCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccc
Confidence 899999999999999999888876521 024799999998743 113333344455443322
Q ss_pred HH-HHHhcCCCcccEEEeCCCCCCCCCC--CcC---H-HHH------HHHHHHHHHHHHHhccCCCEEEEEEecC---CC
Q 025715 109 EV-VIRHFDGCKADLVVCDGAPDVTGLH--DMD---E-FVQ------SQLILAGLTVVTHVLKEGGKFIAKIFRG---KD 172 (249)
Q Consensus 109 ~~-i~~~~~~~~~DlVlsD~~~~~~g~~--~~~---~-~~~------~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~ 172 (249)
.. -........||-|++|..+...|.. +.+ + +.. -.|+..++..++++||+||++|.++++. ++
T Consensus 225 ~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 225 YLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred ccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 10 0000122579999999876544421 111 1 111 2367788999999999999999998853 23
Q ss_pred HHHHHHHHhcCCC
Q 025715 173 TSLLYCQLKLFFP 185 (249)
Q Consensus 173 ~~~l~~~l~~~f~ 185 (249)
..-+-.+++....
T Consensus 305 EaVV~~~L~~~~~ 317 (375)
T KOG2198|consen 305 EAVVQEALQKVGG 317 (375)
T ss_pred HHHHHHHHHHhcC
Confidence 3334455655433
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-09 Score=94.55 Aligned_cols=118 Identities=23% Similarity=0.260 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
++.+|||+|||+|.++..++++.+ ..+|+|+|+++.. .+ .+++++++|+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-------------~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--- 184 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-------------EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--- 184 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---
Confidence 457999999999999999998763 5799999999742 12 3578889998642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCC-CCc------CHH-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGL-HDM------DEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~-~~~------~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~ 174 (249)
+.+.+||+|++|++....+. ... +.. .....+..++..+.++|+|||.+++.+-. ...
T Consensus 185 ------~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~ 256 (284)
T TIGR03533 185 ------LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--SME 256 (284)
T ss_pred ------cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHH
Confidence 23457999999975322111 000 111 11345677899999999999999986643 224
Q ss_pred HHHHHHhc
Q 025715 175 LLYCQLKL 182 (249)
Q Consensus 175 ~l~~~l~~ 182 (249)
.+...+..
T Consensus 257 ~v~~~~~~ 264 (284)
T TIGR03533 257 ALEEAYPD 264 (284)
T ss_pred HHHHHHHh
Confidence 55555554
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=97.64 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~~~~~~~~i 111 (249)
..+|||+|||+|.++..++++.+ ..+|+++|+++.+. .. ..+++.+|+.+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-------------~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------ 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-------------KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------ 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------
Confidence 35899999999999999998753 46899999997431 11 234566676542
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEe
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 190 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (249)
. .++||+|+||+++.. |.. .+ .......+..+.+.|+|||.|++...+...+..++ .+.|..+.+.
T Consensus 258 ---~-~~~fDlIvsNPPFH~-g~~-~~----~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l---~~~Fg~~~~l 323 (342)
T PRK09489 258 ---I-KGRFDMIISNPPFHD-GIQ-TS----LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLL---DETFGSHEVL 323 (342)
T ss_pred ---c-CCCccEEEECCCccC-Ccc-cc----HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHH---HHHcCCeEEE
Confidence 1 368999999987643 211 11 22345678899999999999998655544555543 4467777664
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.2e-10 Score=93.58 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=81.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+...++||+|||+|.++..++++.+ +..|+|+|+++.. .+.+++++++|+.+..
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-------------~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-- 79 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-------------DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-- 79 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH--
Confidence 3557999999999999999998764 5799999998731 2457889999986532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
...+..+++|.|+++.+..+....... ..-+....+..+.++|||||.|.+.+-.......+...+...
T Consensus 80 ---~~~~~~~~~d~v~~~~pdpw~k~~h~~---~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 80 ---DKFFPDGSLSKVFLNFPDPWPKKRHNK---RRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred ---HhhCCCCceeEEEEECCCcCCCCCccc---cccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 112344689999998643332111000 000124578889999999999988654333344455555543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=95.46 Aligned_cols=119 Identities=20% Similarity=0.172 Sum_probs=83.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..+++..+ ...|+++|+++.. ...+++++.+|+.+..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-------------~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp----- 173 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP----- 173 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC-----
Confidence 5678999999999999998887764 3689999998732 1346788888886542
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec----------------CCCHHH
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR----------------GKDTSL 175 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~----------------~~~~~~ 175 (249)
+.+++||+|++....... .+. ..++..+.++|+|||.+++.... .....+
T Consensus 174 ---~~~~sFDvVIs~~~L~~~----~d~-------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eE 239 (340)
T PLN02490 174 ---FPTDYADRYVSAGSIEYW----PDP-------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239 (340)
T ss_pred ---CCCCceeEEEEcChhhhC----CCH-------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHH
Confidence 345789999997654321 121 24688999999999999874321 112355
Q ss_pred HHHHHhcC-CCeeEEe
Q 025715 176 LYCQLKLF-FPVVTFA 190 (249)
Q Consensus 176 l~~~l~~~-f~~v~~~ 190 (249)
+...++.. |+.|.+.
T Consensus 240 l~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 240 YIEWFTKAGFKDVKLK 255 (340)
T ss_pred HHHHHHHCCCeEEEEE
Confidence 66666654 8876653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=97.02 Aligned_cols=110 Identities=17% Similarity=0.115 Sum_probs=76.1
Q ss_pred hhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------C
Q 025715 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (249)
Q Consensus 24 ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~ 91 (249)
|+.+|...+...++.+ +|.+|||+|||+|.++..++...+ ..|+|+|.++.. .
T Consensus 106 ~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~--------------~~V~GiD~S~~~l~q~~a~~~~~~~ 170 (322)
T PRK15068 106 RSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGA--------------KLVVGIDPSQLFLCQFEAVRKLLGN 170 (322)
T ss_pred hHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCC--------------CEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 3445544444444433 468999999999999998887632 479999998731 0
Q ss_pred CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 92 ~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
-.++.++.+|+.+.+ + .++||+|+|.+..... .+. ...+..+.+.|+|||.|++..+
T Consensus 171 ~~~i~~~~~d~e~lp--------~-~~~FD~V~s~~vl~H~----~dp-------~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 171 DQRAHLLPLGIEQLP--------A-LKAFDTVFSMGVLYHR----RSP-------LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CCCeEEEeCCHHHCC--------C-cCCcCEEEECChhhcc----CCH-------HHHHHHHHHhcCCCcEEEEEEE
Confidence 135778888876543 2 4689999997654321 121 2468889999999999998754
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=92.96 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=85.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||||||.|..+..+++..+ ..+++-+|++.++. .++..+...|+.+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-------------~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~----- 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-------------QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP----- 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-------------CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-----
Confidence 45999999999999999998864 68999999998641 23434566777663
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 190 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (249)
.. ++||+|+||+++. .|.. ....+....+..|.+.|++||.|-+-.-+......+ |++.|..+.++
T Consensus 221 ----v~-~kfd~IisNPPfh-~G~~-----v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~---L~~~Fg~v~~l 286 (300)
T COG2813 221 ----VE-GKFDLIISNPPFH-AGKA-----VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKK---LKELFGNVEVL 286 (300)
T ss_pred ----cc-ccccEEEeCCCcc-CCcc-----hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHH---HHHhcCCEEEE
Confidence 23 4899999999775 3321 223345678889999999999999855544555444 56679888875
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.8e-10 Score=93.03 Aligned_cols=92 Identities=22% Similarity=0.237 Sum_probs=68.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
++++.+|||+|||+|.++..+++..+ ..++|+++|+++.. .+.+++++.+|..+..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~------------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~- 141 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVG------------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW- 141 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-
Confidence 36889999999999999999998765 35789999999732 2457888999986531
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....+||+|++++.... ......+.|+|||+|++-+
T Consensus 142 -------~~~~~fD~Ii~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 -------EPLAPYDRIYVTAAGPK-----------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred -------cccCCCCEEEEcCCccc-----------------ccHHHHHhcCcCcEEEEEE
Confidence 12357999999864321 1223567899999999854
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.2e-09 Score=89.85 Aligned_cols=160 Identities=15% Similarity=0.206 Sum_probs=101.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~~ 107 (249)
.++.+|||||||.|.++..+++..+ ..+|++||+++.. . .++++++.+|..+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-------------~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-- 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-------------DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-- 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH--
Confidence 3567999999999999999988764 5799999998731 1 25678888887542
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec-CCCHHHHHHHHhcCCCe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-GKDTSLLYCQLKLFFPV 186 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-~~~~~~l~~~l~~~f~~ 186 (249)
+ ... ..+||+|++|.. +..+. .... .....+..+.+.|+|||.+++-++. .+....++..++..|..
T Consensus 130 ---l-~~~-~~~yD~I~~D~~-~~~~~---~~~l---~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 130 ---I-AVH-RHSTDVILVDGF-DGEGI---IDAL---CTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred ---H-HhC-CCCCCEEEEeCC-CCCCC---cccc---CcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 1 122 358999999962 11111 1000 0135788899999999999987664 33456677788888975
Q ss_pred -eEEecCCCCCCCCceEEEEEeeccC-CCCCCchhhhHhHHhhCCCCC
Q 025715 187 -VTFAKPKSSRNSSIEAFAVCENYFP-PEGFNPKDLHRLLEKVGSPWG 232 (249)
Q Consensus 187 -v~~~kP~~sr~~s~E~y~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (249)
+.++ |.. ...| ..++ +++. +....-..|......++..|+
T Consensus 198 ~~~~~-~~~-~~~N--~v~~--a~~~~~~~~~~~~l~~~a~~l~~~~~ 239 (262)
T PRK04457 198 RVLEL-PAE-SHGN--VAVF--AFKSAPKELRWDKLRKRAKKLENEHG 239 (262)
T ss_pred cEEEE-ecC-CCcc--EEEE--EECCCCCCcCHHHHHHHHHHHHHHhC
Confidence 3443 322 2223 3333 3342 333443456555555666665
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=97.86 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=77.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~ 106 (249)
.+|.+|||||||+|+|+.+++.. + ..+|++||+++.. .+ .+++++++|+.+.-
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-g-------------a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l 284 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-G-------------CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH
Confidence 36789999999999998776532 2 3599999999842 13 25788999986531
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC-CHHHHHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQL 180 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~-~~~~l~~~l 180 (249)
..+. ..+++||+|++|++.-.... ..-....+-+...+..+.++|+|||.|++..+.+. ....+..++
T Consensus 285 --~~~~--~~~~~fDlVilDPP~f~~~k--~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v 353 (396)
T PRK15128 285 --RTYR--DRGEKFDVIVMDPPKFVENK--SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKII 353 (396)
T ss_pred --HHHH--hcCCCCCEEEECCCCCCCCh--HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHH
Confidence 1111 12458999999985422111 01111222345677889999999999997665432 334444444
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9e-10 Score=100.80 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=93.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CC--CceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IE--GVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~--~v~~~~gDi~~~~~~~~i 111 (249)
++|.+|||+|||+|+++..+++..+ ++|+|+|+++... .. ++++..+|..+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g--------------~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~------- 224 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG--------------VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD------- 224 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-------
Confidence 6889999999999999999987654 6999999998431 12 35556666543
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEec
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAK 191 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~k 191 (249)
+ .++||+|+|.+.+...|..+ ....+..+.++|||||.+++..+........ ...|-.-. +-
T Consensus 225 ---l-~~~fD~Ivs~~~~ehvg~~~---------~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~----~~~~i~~y-if 286 (383)
T PRK11705 225 ---L-NGQFDRIVSVGMFEHVGPKN---------YRTYFEVVRRCLKPDGLFLLHTIGSNKTDTN----VDPWINKY-IF 286 (383)
T ss_pred ---c-CCCCCEEEEeCchhhCChHH---------HHHHHHHHHHHcCCCcEEEEEEccCCCCCCC----CCCCceee-ec
Confidence 2 36899999987654433221 1246788999999999999876532221000 00111111 12
Q ss_pred CCCCCCCCc------e-EEEEEeeccCCCCCCchhhhHhHHhhCCCCC
Q 025715 192 PKSSRNSSI------E-AFAVCENYFPPEGFNPKDLHRLLEKVGSPWG 232 (249)
Q Consensus 192 P~~sr~~s~------E-~y~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 232 (249)
|....+.-. | .+.+..-..-..+|.+ .|..|.+++++.|+
T Consensus 287 p~g~lps~~~i~~~~~~~~~v~d~~~~~~hy~~-TL~~W~~~f~~~~~ 333 (383)
T PRK11705 287 PNGCLPSVRQIAQASEGLFVMEDWHNFGADYDR-TLMAWHENFEAAWP 333 (383)
T ss_pred CCCcCCCHHHHHHHHHCCcEEEEEecChhhHHH-HHHHHHHHHHHHHH
Confidence 332222111 1 1223222334566755 48899999888765
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=95.91 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=77.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------C-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|..+..+++. + ..+|+|+|+++.+. + ..+.+..+|...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-------------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--- 220 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-------------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--- 220 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---
Confidence 47899999999999999887753 3 36899999998531 1 123334444221
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCee
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v 187 (249)
...++||+|++|... + .+...+..+.++|||||.|++.-+......++...++..|+.+
T Consensus 221 -------~~~~~fDlVvan~~~--------~------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~ 279 (288)
T TIGR00406 221 -------PIEGKADVIVANILA--------E------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVV 279 (288)
T ss_pred -------ccCCCceEEEEecCH--------H------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCcee
Confidence 124689999998531 1 1234677889999999999997776666677777777666655
Q ss_pred EE
Q 025715 188 TF 189 (249)
Q Consensus 188 ~~ 189 (249)
..
T Consensus 280 ~~ 281 (288)
T TIGR00406 280 EI 281 (288)
T ss_pred eE
Confidence 44
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=83.39 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=82.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC--ceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~--v~~~~gDi~~~~ 106 (249)
.++.+|||+|||+|.++..++.+ + ..|+++|+++.. ...+ +.++.+|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~--------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G--------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c--------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 57789999999999999999876 3 689999999732 1122 67788887652
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCC-CC-cCHH--------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGL-HD-MDEF--------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~-~~-~~~~--------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+...+||+|++|.+....+. .. .+.. .....+...++.+.++|+|||.+++.+........+
T Consensus 86 --------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l 157 (188)
T PRK14968 86 --------FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEV 157 (188)
T ss_pred --------ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHH
Confidence 23348999999875432110 00 0000 012234567889999999999998866554455666
Q ss_pred HHHHhcC-CCee
Q 025715 177 YCQLKLF-FPVV 187 (249)
Q Consensus 177 ~~~l~~~-f~~v 187 (249)
...+... |+.+
T Consensus 158 ~~~~~~~g~~~~ 169 (188)
T PRK14968 158 LEYLEKLGFEAE 169 (188)
T ss_pred HHHHHHCCCeee
Confidence 6666654 4433
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=90.59 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=73.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..++...+ +.++++++|+++.. ...++++..+|+.+.+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~------------~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 82 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVG------------PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--- 82 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC------------CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC---
Confidence 5788999999999999999998874 35799999999742 1245778888887643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+..++||+|+++...... .+. ...+..+.++|+|||.+++..
T Consensus 83 -----~~~~~~D~v~~~~~~~~~----~~~-------~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 -----FPDGSFDAVRSDRVLQHL----EDP-------ARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred -----CCCCCceEEEEechhhcc----CCH-------HHHHHHHHHHhcCCcEEEEEe
Confidence 345789999998654322 121 246788899999999999754
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=93.63 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=72.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.+..+|||+|||+|.++..+++..+.. ....|+|+|+++.. ..+++.+..+|+.+.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~----------~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp------- 146 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI----------TTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP------- 146 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc----------cCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-------
Confidence 345789999999999999998876411 12479999999843 2467888899987753
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHH
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 177 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~ 177 (249)
+.+++||+|++...+. .+....++|||||.|++.+.......++.
T Consensus 147 -~~~~sfD~I~~~~~~~------------------~~~e~~rvLkpgG~li~~~p~~~~l~el~ 191 (272)
T PRK11088 147 -FADQSLDAIIRIYAPC------------------KAEELARVVKPGGIVITVTPGPRHLFELK 191 (272)
T ss_pred -CcCCceeEEEEecCCC------------------CHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence 3567999999865321 13456789999999998655444444443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=91.11 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=67.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|..+..+++..+ ..++|+++|+++.. .+.+++++.+|.....
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~------------~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-- 140 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVG------------KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-- 140 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC--
Confidence 6889999999999999999998775 45799999999732 2357889999986532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.....||+|+++++.. .. .....+.|||||.|++-
T Consensus 141 ------~~~~~fD~I~~~~~~~-----~~------------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 ------EENAPYDRIYVTAAGP-----DI------------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ------CcCCCcCEEEECCCcc-----cc------------hHHHHHhhCCCcEEEEE
Confidence 1346899999976421 11 12345689999999984
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=101.14 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=73.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~ 108 (249)
++++.+|||+|||+|.++..+++..+ .+|+|+|+++.. . ..++++.++|+.+.+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-- 327 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD--------------VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-- 327 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--
Confidence 36788999999999999998887653 699999999632 1 135788899987643
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+++++||+|+|.....+. .+. ..++..+.++|||||.+++..+
T Consensus 328 ------~~~~~fD~I~s~~~l~h~----~d~-------~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 328 ------YPDNSFDVIYSRDTILHI----QDK-------PALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ------CCCCCEEEEEECCccccc----CCH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 345689999997654332 122 2568889999999999998765
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=92.27 Aligned_cols=109 Identities=19% Similarity=0.138 Sum_probs=73.9
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC-CC-----CCC
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA-----PIE 93 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~-~~-----~~~ 93 (249)
.|++|+++||.++.+.+++..++.+|||+|||||+|+..+++. + ..+|+|||+++ +. ..+
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g-------------a~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G-------------AKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C-------------CCEEEEEeCCHHHHHHHHhcCC
Confidence 3999999999999999987667889999999999999999986 3 36899999998 21 123
Q ss_pred Cce-EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 94 GVI-QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 94 ~v~-~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++. +...|+..... +.+ ..|++.+|.++-. . ...+.....+|++ |.++.
T Consensus 120 ~v~~~~~~ni~~~~~-----~~~---~~d~~~~DvsfiS-----------~---~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 120 RVKVLERTNIRYVTP-----ADI---FPDFATFDVSFIS-----------L---ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred CeeEeecCCcccCCH-----hHc---CCCceeeeEEEee-----------h---HhHHHHHHHHhCc-CeEEE
Confidence 332 23345553221 111 1355666643311 0 0135566778888 77776
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=94.04 Aligned_cols=110 Identities=16% Similarity=0.098 Sum_probs=73.8
Q ss_pred hhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------C
Q 025715 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (249)
Q Consensus 24 ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~ 91 (249)
|+.+|...+....+. .+|.+|||+|||+|.++..++... ...|+|+|.++.. .
T Consensus 105 ~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g--------------~~~v~GiDpS~~ml~q~~~~~~~~~~ 169 (314)
T TIGR00452 105 RSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG--------------AKSLVGIDPTVLFLCQFEAVRKLLDN 169 (314)
T ss_pred HHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHHHHHhcc
Confidence 345554445554443 356899999999999988877542 2479999998831 0
Q ss_pred CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 92 ~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..++.+..+|+.+.+ ...+||+|+|.+..... .+. ...+..+.++|||||.|++.++
T Consensus 170 ~~~v~~~~~~ie~lp---------~~~~FD~V~s~gvL~H~----~dp-------~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 170 DKRAILEPLGIEQLH---------ELYAFDTVFSMGVLYHR----KSP-------LEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCeEEEECCHHHCC---------CCCCcCEEEEcchhhcc----CCH-------HHHHHHHHHhcCCCCEEEEEEE
Confidence 124556666664432 12479999998754332 121 2468889999999999998754
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=90.75 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++.+++++ + ..|+|+|+++.. .+.++++..+|+.+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g--------------~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--- 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-G--------------FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--- 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-C--------------CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC---
Confidence 4579999999999999999875 2 589999999742 1345677778876532
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+ +++||+|++....... +. ......+..+.++|+|||.+++.
T Consensus 92 -----~-~~~fD~I~~~~~~~~~-----~~----~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 92 -----F-DGEYDFILSTVVLMFL-----EA----KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred -----c-CCCcCEEEEecchhhC-----CH----HHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 3579999998654221 11 11235788889999999996653
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=89.81 Aligned_cols=156 Identities=24% Similarity=0.218 Sum_probs=91.2
Q ss_pred CCCeEEEEcCC------CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAA------PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~g------pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
..+||++||+| ||. ..+.+.++ .++.++..|+.+...-.+. .+.+|.....
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt--~VLrqwlP------------~~ailvDnDi~d~vSDa~~-~~~~Dc~t~~-------- 117 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGT--AVLRQWLP------------EDAILVDNDIRDYVSDADQ-SIVGDCRTYM-------- 117 (299)
T ss_dssp TT-EEEEES---TTSB-HHH--HHHHHHS-------------TT-EEEEEESS--B-SSSE-EEES-GGGEE--------
T ss_pred cCcEEEEecccccCCcCCch--HHHHHhCC------------CCcEEEecchhhhccccCC-ceeccccccC--------
Confidence 46899999974 554 67888887 5789999999986544443 4668876643
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEecCCC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 194 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~ 194 (249)
.+.++|+|+||+--...-.-+.+......+..-++.....-|+-||++.+|+-......++.+++ ++|..++++. .+
T Consensus 118 -~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~-~~F~~wt~Fc-T~ 194 (299)
T PF06460_consen 118 -PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELM-GYFSWWTCFC-TA 194 (299)
T ss_dssp -ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHH-TTEEEEEEEE-EG
T ss_pred -CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHH-hhcccEEEEe-cc
Confidence 35789999999841111000000000112334466777889999999999998877777777755 5799999874 35
Q ss_pred CCCCCceEEEEEeeccCC----CCCCchhhhH
Q 025715 195 SRNSSIEAFAVCENYFPP----EGFNPKDLHR 222 (249)
Q Consensus 195 sr~~s~E~y~v~~g~~~~----~~~~~~~~~~ 222 (249)
-..+|||.+++|.+|.+. ..+|.+.|++
T Consensus 195 VNtSSSEaFLigiNYLg~~~~~~~IdG~~mHA 226 (299)
T PF06460_consen 195 VNTSSSEAFLIGINYLGKFSEGEIIDGNVMHA 226 (299)
T ss_dssp GGTTSS-EEEEEEEE-SS---SS---HHHHHH
T ss_pred cCccccceeEEeeeccCccccccccchHHHHH
Confidence 567789999999999987 4455554443
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=94.67 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=78.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~~~ 110 (249)
.+|||+|||+|.++..++...+ ..+|+++|+++.+ .+ .+++++++|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-------------~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----- 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-------------DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----- 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-----
Confidence 6899999999999999988753 5799999999842 12 2478889997542
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCC-CCc------CHH-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGL-HDM------DEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~-~~~------~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
++..+||+|++|++....+. ... +.. .....+..++..+.++|+|||.+++.+... ...+
T Consensus 197 ----l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~ 270 (307)
T PRK11805 197 ----LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHL 270 (307)
T ss_pred ----CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHH
Confidence 23457999999974321110 000 000 123556788999999999999999865432 3344
Q ss_pred HHHHh
Q 025715 177 YCQLK 181 (249)
Q Consensus 177 ~~~l~ 181 (249)
...+.
T Consensus 271 ~~~~~ 275 (307)
T PRK11805 271 EEAYP 275 (307)
T ss_pred HHHHh
Confidence 44443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-08 Score=82.05 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=83.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|++++|+|||+|+.+..++ +.+ +.++|+|+|.++.+ ..+|+..+.||.-+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a-~~~------------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~--- 96 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWA-LAG------------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA--- 96 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHH-HhC------------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh---
Confidence 789999999999999999999 665 57999999998743 257888889987542
Q ss_pred HHHHHhcCC-CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 109 EVVIRHFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 109 ~~i~~~~~~-~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
+++ .++|.|+-.|+ .+. ..+++.+...|||||++|+...+.+....++..+++.
T Consensus 97 ------L~~~~~~daiFIGGg------~~i---------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 97 ------LPDLPSPDAIFIGGG------GNI---------EEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred ------hcCCCCCCEEEECCC------CCH---------HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 222 27999998764 112 3578889999999999999877777777777666653
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-08 Score=87.78 Aligned_cols=129 Identities=22% Similarity=0.223 Sum_probs=85.1
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+|||||||+|..+..+++..+ ...|+|+|+++.+ .+.++.++++|+...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-------------~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~------- 172 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-------------DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP------- 172 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-------------CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------
Confidence 799999999999999998864 5799999999943 123345566676553
Q ss_pred HhcCCCcccEEEeCCCCCCCCCC-------CcCHH-------HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLH-------DMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~-------~~~~~-------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~ 178 (249)
+. ++||+|+||++--..... ..++. .-++.+...+..+...|+|||.+++.+-. .....+..
T Consensus 173 --~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~~ 248 (280)
T COG2890 173 --LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVKA 248 (280)
T ss_pred --cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHHH
Confidence 33 489999999852111100 01111 12456788899999999999999986532 22333444
Q ss_pred HHhc-C-CCeeEEecCCCCC
Q 025715 179 QLKL-F-FPVVTFAKPKSSR 196 (249)
Q Consensus 179 ~l~~-~-f~~v~~~kP~~sr 196 (249)
++.. . |..+...+....+
T Consensus 249 ~~~~~~~~~~v~~~~d~~g~ 268 (280)
T COG2890 249 LFEDTGFFEIVETLKDLFGR 268 (280)
T ss_pred HHHhcCCceEEEEEecCCCc
Confidence 4433 2 5667777665544
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.7e-09 Score=93.93 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~~ 107 (249)
.|.+||||+|-||+||.+++.. | ..+|++||++.-. .+ ..+.++++|+.+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-G-------------A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~-- 280 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-G-------------ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW-- 280 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-C-------------CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH--
Confidence 3899999999999999999853 2 3599999999742 12 2467899998763
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec-CCCHHHHHHHHh
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-GKDTSLLYCQLK 181 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-~~~~~~l~~~l~ 181 (249)
++...+ .+.+||+|+.|++--..+- .+.+...+-+...+..+.++|+|||++++.+.. ......+..++.
T Consensus 281 l~~~~~--~g~~fDlIilDPPsF~r~k--~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 281 LRKAER--RGEKFDLIILDPPSFARSK--KQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred HHHHHh--cCCcccEEEECCcccccCc--ccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 122211 2458999999984222211 223455566678899999999999999987764 334444444443
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-09 Score=87.04 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=67.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~ 107 (249)
+++.+|||+|||+|..+..+++.++ ..++|+++|+++.. .+. +++++.+|..+..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~------------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~- 137 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIE------------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL- 137 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-
Confidence 5789999999999999999998775 35799999999732 122 4788889986531
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....+||+|+++.+... ......+.|+|||.|++-+
T Consensus 138 -------~~~~~fD~Ii~~~~~~~-----------------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 -------EKHAPFDAIIVTAAAST-----------------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred -------ccCCCccEEEEccCcch-----------------hhHHHHHhcCcCcEEEEEE
Confidence 12358999999864311 1124568899999998854
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.7e-09 Score=88.51 Aligned_cols=124 Identities=18% Similarity=0.187 Sum_probs=88.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.||.+|+|.|.|+|.++.+++..++ +.|+|+.+|+.+.. .+ ++++...+|+.+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg------------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~- 159 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVG------------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI- 159 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhC------------CCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-
Confidence 7899999999999999999998887 67999999998731 12 33777789998753
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPV 186 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~ 186 (249)
.+..||.|+.|+. +++ .++.-+.+.|+|||.+++-+-.-+........|+.. |-.
T Consensus 160 --------~~~~vDav~LDmp---------~PW-------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 160 --------DEEDVDAVFLDLP---------DPW-------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVD 215 (256)
T ss_pred --------cccccCEEEEcCC---------ChH-------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccc
Confidence 2358999999984 222 367888999999999987443333344444445543 433
Q ss_pred eEE---------ecCCCCCCCCc
Q 025715 187 VTF---------AKPKSSRNSSI 200 (249)
Q Consensus 187 v~~---------~kP~~sr~~s~ 200 (249)
++. +++.+.||.+.
T Consensus 216 ie~~E~l~R~~~v~~~~~RP~~~ 238 (256)
T COG2519 216 IEAVETLVRRWEVRKEATRPETR 238 (256)
T ss_pred hhhheeeeheeeecccccCcccc
Confidence 221 45677777753
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-09 Score=88.02 Aligned_cols=94 Identities=17% Similarity=0.068 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCC--ceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEG--VIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~--v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++.+++++ + ..|+|+|+++... ..+ +....+|+...+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g--------------~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---- 90 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-G--------------YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---- 90 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc----
Confidence 3469999999999999999874 3 6999999998421 112 445556654321
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+. .+||+|++...+... +. ......+..+.++|+|||.+++-.
T Consensus 91 ----~~-~~fD~I~~~~~~~~~-----~~----~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 91 ----LN-EDYDFIFSTVVFMFL-----QA----GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ----cc-CCCCEEEEecccccC-----CH----HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 23 579999997654321 11 112356788899999999966543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-09 Score=93.92 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+..+||+|||+|.++..++.+.+ +..++|+|+++.. .+.++.++++|+...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-------------~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l---- 184 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-------------NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL---- 184 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-------------CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh----
Confidence 467999999999999999998864 5799999998621 356888999997542
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHH-HHHHHHHHHHHhccCCCEEEEEEec
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQ-LILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~-l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+.++++++|.|+++.+..|... .+ .+ .....+..+.++|+|||.+.+++-.
T Consensus 185 --l~~~~~~s~D~I~lnFPdPW~Kk---rH---RRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 185 --LELLPSNSVEKIFVHFPVPWDKK---PH---RRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred --hhhCCCCceeEEEEeCCCCcccc---ch---hhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 23466789999998764333211 11 12 2356789999999999999997643
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-08 Score=88.43 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=77.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCceE----eecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQ----VQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v~~----~~gDi~~~~~ 107 (249)
++|.+|||+|||+|.++.++++. + ..+|+|+|+.|.+. ..+|.. -..+...
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-G-------------A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~--- 223 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-G-------------AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE--- 223 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-C-------------CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh---
Confidence 58999999999999999888765 4 36899999999652 123321 1111111
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHH-hcCCCe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL-KLFFPV 186 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l-~~~f~~ 186 (249)
....+.||+|++|.- ++.+......+.++|||||+++++=.-......+...+ ++-|.-
T Consensus 224 ------~~~~~~~DvIVANIL--------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v 283 (300)
T COG2264 224 ------VPENGPFDVIVANIL--------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV 283 (300)
T ss_pred ------hcccCcccEEEehhh--------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence 123368999999841 22234566778899999999998755445566777777 345766
Q ss_pred eEEec
Q 025715 187 VTFAK 191 (249)
Q Consensus 187 v~~~k 191 (249)
+....
T Consensus 284 ~~~~~ 288 (300)
T COG2264 284 VEVLE 288 (300)
T ss_pred eEEEe
Confidence 65543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-09 Score=86.11 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=73.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++...+ .++|+++|+++.. .+.+++++.+|+.+.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~-------------~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~--- 102 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP-------------KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC--- 102 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH---
Confidence 5788999999999999998886543 5799999999732 134678888887431
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~ 181 (249)
...+. ..+|.|+.++. . + ...++..+.++|+|||.|++.....+....+...++
T Consensus 103 ---~~~~~-~~~d~v~~~~~------~--~-------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 156 (196)
T PRK07402 103 ---LAQLA-PAPDRVCIEGG------R--P-------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLA 156 (196)
T ss_pred ---HhhCC-CCCCEEEEECC------c--C-------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHH
Confidence 11122 34677777541 0 1 134678889999999999987654443344444444
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-09 Score=94.93 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=69.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C----CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~----~~~v~~~~gDi~~~~~~ 108 (249)
+|.+|||+|||+|.++..+++. + ..|+|+|+++.. . ..+++++++|+.+..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g--------------~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-- 193 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G--------------ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-- 193 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C--------------CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--
Confidence 5679999999999999988753 2 699999999732 0 135778888875532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.+++||+|++....... .+. ..++..+.++|||||.+++.+..
T Consensus 194 ------~~~~~FD~Vi~~~vLeHv----~d~-------~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 194 ------DEGRKFDAVLSLEVIEHV----ANP-------AEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred ------hccCCCCEEEEhhHHHhc----CCH-------HHHHHHHHHHcCCCcEEEEEECC
Confidence 234689999996543221 121 24678888999999999997764
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-09 Score=90.40 Aligned_cols=99 Identities=23% Similarity=0.201 Sum_probs=71.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|..+..+++.+.. +.++|+|+|+++.. .. .+++++++|+.+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-----------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH-----------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 367889999999999999888875421 35799999999832 11 26888899986632
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
...+|+|++....... +.. ....++..+.+.|||||.|++..
T Consensus 123 ----------~~~~D~vv~~~~l~~l-----~~~----~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 123 ----------IENASMVVLNFTLQFL-----EPS----ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ----------CCCCCEEehhhHHHhC-----CHH----HHHHHHHHHHHhcCCCCEEEEEE
Confidence 2458999987543221 111 12357888999999999999864
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=84.08 Aligned_cols=117 Identities=19% Similarity=0.238 Sum_probs=79.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC---------CCCCCceEeecCCCChhhHHHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~---------~~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++||+|||.|.++..|+.+. ..++++|+++. ...++|++.++|+.+..
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---------------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~------- 102 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---------------DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW------- 102 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---------------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------
T ss_pred ceeEecCCCccHHHHHHHHhh---------------CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-------
Confidence 689999999999999999886 48999999983 24678999999997742
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC---------CCHHHHHHHHhcCC
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---------KDTSLLYCQLKLFF 184 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---------~~~~~l~~~l~~~f 184 (249)
+.++||+|+.--...+- .+. +.+..++......|+|||.||+-.++. ...+.+..++...+
T Consensus 103 --P~~~FDLIV~SEVlYYL----~~~----~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 103 --PEGRFDLIVLSEVLYYL----DDA----EDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp ---SS-EEEEEEES-GGGS----SSH----HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred --CCCCeeEEEEehHhHcC----CCH----HHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 56899999875432221 121 123456777888999999999977642 23566888888888
Q ss_pred CeeEEec
Q 025715 185 PVVTFAK 191 (249)
Q Consensus 185 ~~v~~~k 191 (249)
.+|..+.
T Consensus 173 ~~~~~~~ 179 (201)
T PF05401_consen 173 TEVERVE 179 (201)
T ss_dssp EEEEEEE
T ss_pred hheeEEE
Confidence 7776653
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.5e-09 Score=88.60 Aligned_cols=99 Identities=18% Similarity=0.057 Sum_probs=71.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C---CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~---~~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++++.. +.++|+|+|+++.. . ..+++++++|+.+.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-----------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~- 119 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ-----------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE- 119 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-
Confidence 57789999999999999999887531 35799999998732 1 135788899987643
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...+|+|++....... ... -...++..+.+.|+|||.|++...
T Consensus 120 ---------~~~~d~v~~~~~l~~~-----~~~----~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 120 ---------IKNASMVILNFTLQFL-----PPE----DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ---------CCCCCEEeeecchhhC-----CHH----HHHHHHHHHHHhcCCCeEEEEeec
Confidence 2358999987654321 111 123578889999999999998643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8e-09 Score=101.38 Aligned_cols=107 Identities=16% Similarity=0.063 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~~ 107 (249)
+|.+|||||||+|+++.+++.. + ..+|++||+++.+ .+ .+++++++|+.+.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-------------a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l- 602 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-------------AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL- 602 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH-
Confidence 5789999999999999999874 3 2579999999842 12 25788999986521
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+ +++||+|++|++.-..+....+.....+.+...+..+.++|+|||.+++...
T Consensus 603 -----~~~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 603 -----KEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred -----HHc-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 112 3689999999853322211012222344456778889999999999987554
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-09 Score=88.90 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHhc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
+.+|||+|||+|.++..+++++... ....|++||+++.+ ..+++.++++|+.... +
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~----------~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~--------~ 111 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA----------KPREIVCVELNHTYYKLGKRIVPEATWINADALTTE--------F 111 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC----------CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc--------c
Confidence 5799999999999999998875311 23689999999853 2356788899987532 1
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHHHHHhccCCCE
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDE-FVQSQLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~-~~~~~l~~~~l~~a~~~Lk~gG~ 162 (249)
..+||+|++|+++......+... .....+....+..|.+++++|+.
T Consensus 112 -~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 112 -DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred -cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 35899999998654322111100 11123455677888886666654
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=85.82 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=72.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..+++..+ ..++++++|+++.. ...++++..+|+.+..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~------------~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAP------------DRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---- 101 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcC------------CCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence 3678999999999999999988764 23689999998632 1235778888887643
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+..++||+|++...... ... ...++..+.++|+|||.+++..+..
T Consensus 102 ----~~~~~~D~i~~~~~~~~-----~~~------~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 102 ----FEDNSFDAVTIAFGLRN-----VTD------IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred ----CCCCcEEEEEEeeeeCC-----ccc------HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 23468999998653321 111 1357888999999999999866543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.5e-09 Score=77.45 Aligned_cols=90 Identities=27% Similarity=0.408 Sum_probs=61.4
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHHHHHHh
Q 025715 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 45 vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
|||+|||+|..+..+.+.... ++..+++++|+++.. .-..++++++|+.+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH-------
T ss_pred CEEeecCCcHHHHHHHHHhhh----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc-------
Confidence 799999999999999988621 024799999999842 11378999999988531
Q ss_pred cCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC
Q 025715 115 FDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (249)
Q Consensus 115 ~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG 161 (249)
..++||+|++.+. +.. .+. +.+...++.+.++|+|||
T Consensus 64 -~~~~~D~v~~~~~~~~~-----~~~----~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 -SDGKFDLVVCSGLSLHH-----LSP----EELEALLRRIARLLRPGG 101 (101)
T ss_dssp -HSSSEEEEEE-TTGGGG-----SSH----HHHHHHHHHHHHTEEEEE
T ss_pred -cCCCeeEEEEcCCccCC-----CCH----HHHHHHHHHHHHHhCCCC
Confidence 3469999999543 332 121 123567888999999998
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.7e-09 Score=89.24 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.+.+|||+|||+|.++..++++.+ ..+|+++|+++.. ..+++.++++|+.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-------------~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-------- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-------------PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-------- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--------
Confidence 456999999999999998887653 3699999999843 2457888999987632
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHH-------H-H-HHHHHHHHHHhccCCCEEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQS-------Q-L-ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~-------~-l-~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+||+|++|+++......+....... + + ..+.+.....+|+|+|.+.+.
T Consensus 123 -~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 123 -SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred -ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 2368999999987654322111111111 1 1 345667777899999987764
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.5e-09 Score=98.40 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC--CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI--EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~--~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..+++..+ .+.|+|+|+++.. .. .++.++++|+.+.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-------------~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp---- 480 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-------------DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS---- 480 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc----
Confidence 578999999999999988887753 5899999999842 01 24566788876532
Q ss_pred HHHhcCCCcccEEEeCCCCCC-------CCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDV-------TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~-------~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+.+++||+|+++..... .+. ..+ ..-...++..+.++|||||.+++..
T Consensus 481 --~~fedeSFDvVVsn~vLH~L~syIp~~g~-~f~----~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 481 --SSFEKESVDTIVYSSILHELFSYIEYEGK-KFN----HEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred --cccCCCCEEEEEEchHHHhhhhhcccccc-ccc----HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 1245678999998753221 010 001 1223567889999999999999854
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.5e-08 Score=85.59 Aligned_cols=141 Identities=21% Similarity=0.204 Sum_probs=91.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------CCCCceEeecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDIT 103 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------~~~~v~~~~gDi~ 103 (249)
....+||++|||.|+.+..++++.+ ..+|++||+++.. .-++++++.+|..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-------------~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~ 141 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-------------VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI 141 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-------------CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH
Confidence 3467999999999999998876532 3689999999831 1246778888875
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecC----CCHHHHHH
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRG----KDTSLLYC 178 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~----~~~~~l~~ 178 (249)
.. +. . ..++||+|++|..... +. .. .+ ....+..+.+.|+|||.+++..-.. .....+..
T Consensus 142 ~~-----l~-~-~~~~yDvIi~D~~dp~-~~---~~----~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~ 206 (283)
T PRK00811 142 KF-----VA-E-TENSFDVIIVDSTDPV-GP---AE----GLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHR 206 (283)
T ss_pred HH-----Hh-h-CCCcccEEEECCCCCC-Cc---hh----hhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHH
Confidence 42 11 1 3468999999975332 11 11 11 2456778899999999999753322 12345666
Q ss_pred HHhcCCCeeEEecC-CCCCCCCceEEEEEee
Q 025715 179 QLKLFFPVVTFAKP-KSSRNSSIEAFAVCEN 208 (249)
Q Consensus 179 ~l~~~f~~v~~~kP-~~sr~~s~E~y~v~~g 208 (249)
.++..|..|..+.. ..+-+...-.|++|..
T Consensus 207 tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 207 KLKEVFPIVRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred HHHHHCCCEEEEEeECCcccCchheeEEeec
Confidence 77778998887642 2233333335677754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=87.22 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=71.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---CCCceEeecCCCChhhHHHHHHhcC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.++.+|||+|||+|..+.++++. + ..+|+|+|+++... ..++.. .++.+... +. ..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g-------------~~~v~giDis~~~l~~A~~n~~~--~~~~~~~~---~~--~~ 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-G-------------AKKVLAVDIDPQAVEAARENAEL--NGVELNVY---LP--QG 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHH--cCCCceEE---Ec--cC
Confidence 57899999999999888776653 3 24699999998541 011100 01100000 00 01
Q ss_pred CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeEE
Q 025715 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTF 189 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~~ 189 (249)
+.+||+|++|... ..+...+..+.++|||||.+++.-+.......+...+... |..+..
T Consensus 177 ~~~fD~Vvani~~--------------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 177 DLKADVIVANILA--------------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred CCCcCEEEEcCcH--------------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 1269999997521 1123467788999999999999766555666777766654 654443
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=87.15 Aligned_cols=88 Identities=22% Similarity=0.217 Sum_probs=62.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C--CCCceEeecCCCChhhHHHHHHhcC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P--IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~--~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.++.+|||+|||||.++..++++.+ ..|+|+|+++.. . .....++++|+.+.+ +.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~--------------~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp--------~~ 107 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFK--------------YYVVALDYAENMLKMNLVADDKVVGSFEALP--------FR 107 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcC--------------CEEEEECCCHHHHHHHHhccceEEechhhCC--------CC
Confidence 3578999999999999988887643 699999999842 1 112345678876643 45
Q ss_pred CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC
Q 025715 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g 160 (249)
+++||+|++..... +.+. ...++.++.++|||.
T Consensus 108 d~sfD~v~~~~~l~-----~~~d------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFALH-----ASDN------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecChhh-----ccCC------HHHHHHHHHHHhcCc
Confidence 78999999976432 1211 135788999999993
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-09 Score=83.19 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=68.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-CCCceEeecCCCChhhHHHHHHhcCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
..++.+|||+|||+|.++..+++. + .+++++|+++... ...+....-+..... ...
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~~~g~D~~~~~~~~~~~~~~~~~~~~~~--------~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G--------------FEVTGVDISPQMIEKRNVVFDNFDAQDPP--------FPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T--------------SEEEEEESSHHHHHHTTSEEEEEECHTHH--------CHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C--------------CEEEEEECCHHHHhhhhhhhhhhhhhhhh--------ccc
Confidence 467889999999999999999654 3 5999999997331 122222222222221 235
Q ss_pred CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
++||+|+|........ + ....+..+.++|||||.+++.+....
T Consensus 77 ~~fD~i~~~~~l~~~~----d-------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLP----D-------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSEEEEEEESSGGGSS----H-------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cchhhHhhHHHHhhcc----c-------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 7999999987654321 1 13578889999999999999887543
|
... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-08 Score=87.46 Aligned_cols=127 Identities=10% Similarity=0.104 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCChHHHHHHH-HhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CC-CCceEeecCCCChh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~-~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~-~~v~~~~gDi~~~~ 106 (249)
++.+|+|+|||||+.+..+.. ... ++++++++|+++.+ .+ ++++|.++|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~------------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL------------PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence 668999999999988776543 333 46899999999832 12 46999999997732
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH-----HHh
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC-----QLK 181 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~-----~l~ 181 (249)
. ..+.||+|+++.-..+. . .+. ..++....+.|+|||.|++....+. ..+++ ..-
T Consensus 191 ~--------~l~~FDlVF~~ALi~~d-k--~~k-------~~vL~~l~~~LkPGG~Lvlr~~~G~--r~~LYp~v~~~~~ 250 (296)
T PLN03075 191 E--------SLKEYDVVFLAALVGMD-K--EEK-------VKVIEHLGKHMAPGALLMLRSAHGA--RAFLYPVVDPCDL 250 (296)
T ss_pred c--------ccCCcCEEEEecccccc-c--ccH-------HHHHHHHHHhcCCCcEEEEecccch--HhhcCCCCChhhC
Confidence 1 12579999998321110 0 111 3578888999999999999764321 11221 112
Q ss_pred cCCCeeEEecCCCCCCCCc
Q 025715 182 LFFPVVTFAKPKSSRNSSI 200 (249)
Q Consensus 182 ~~f~~v~~~kP~~sr~~s~ 200 (249)
+-|+....++|... .-|+
T Consensus 251 ~gf~~~~~~~P~~~-v~Ns 268 (296)
T PLN03075 251 RGFEVLSVFHPTDE-VINS 268 (296)
T ss_pred CCeEEEEEECCCCC-ceee
Confidence 26888899999654 4454
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=85.54 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=67.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~~~ 110 (249)
++|||+|||+|+++..+++..+ ...|+++|+++.. .+ .+++++.+|+...+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~---- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-------------HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP---- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC----
Confidence 3799999999999999988764 4789999998732 01 34678888885532
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ .++||+|++.......+ + ....+..+.++|+|||.+++..+
T Consensus 64 ----~-~~~fD~I~~~~~l~~~~----~-------~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 64 ----F-PDTYDLVFGFEVIHHIK----D-------KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ----C-CCCCCEeehHHHHHhCC----C-------HHHHHHHHHHHcCCCCEEEEEEc
Confidence 1 35799999865433221 1 12467888999999999998654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.8e-09 Score=76.16 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=49.4
Q ss_pred EEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------C--CCceEeecCCCChhhHHHHHHh
Q 025715 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 46 LDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
||+|||+|.++..+.+..+ ..+++++|+++... . .+......+..+.. +.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-------------~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~------~~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-------------DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF------DY 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---------C
T ss_pred CEeCccChHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh------hc
Confidence 7999999999999998863 57999999998532 1 12223333333311 11
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKF 163 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~l 163 (249)
...++||+|++.....+. .+ ....+..+.++|+|||.|
T Consensus 62 ~~~~~fD~V~~~~vl~~l----~~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 62 DPPESFDLVVASNVLHHL----ED-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp CC----SEEEEE-TTS------S--------HHHHHHHHTTT-TSS-EE
T ss_pred ccccccceehhhhhHhhh----hh-------HHHHHHHHHHHcCCCCCC
Confidence 122589999997655432 11 235788899999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-08 Score=86.66 Aligned_cols=112 Identities=24% Similarity=0.253 Sum_probs=73.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCc--eEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGV--IQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v--~~~~gDi~~~~~~ 108 (249)
..+|.+|||+|||+|..+.++++. | ..+|+|+|++|.+. +.++ ++......+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-------------A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---- 220 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-------------AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---- 220 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-------------BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC----
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc----
Confidence 367899999999999999888765 4 36899999999641 1121 111111111
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVT 188 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~ 188 (249)
...++||+|++|.-. ..+........++|+|||.|+++=+..+....+...+++-|+-+.
T Consensus 221 ------~~~~~~dlvvANI~~--------------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~ 280 (295)
T PF06325_consen 221 ------LVEGKFDLVVANILA--------------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVE 280 (295)
T ss_dssp ------TCCS-EEEEEEES-H--------------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEE
T ss_pred ------cccccCCEEEECCCH--------------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEE
Confidence 123789999998621 123345556678999999999987766777788877765454433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF14314 Methyltrans_Mon: Virus-capping methyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-07 Score=88.51 Aligned_cols=191 Identities=16% Similarity=0.120 Sum_probs=126.7
Q ss_pred CCCCChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEec
Q 025715 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (249)
Q Consensus 6 ~~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavD 85 (249)
.+..||...=.|-..+.+=|-||+..|...+++- + .-+|-.|-|+||.+.++++..+ .++++=..
T Consensus 289 pr~qnPlISGLR~~Q~ATGAHYKlRsIL~~~~i~-~-~d~l~~GDGSGGita~lLR~~p-------------~sr~iFNS 353 (675)
T PF14314_consen 289 PRIQNPLISGLRLFQLATGAHYKLRSILKNLNIK-Y-RDALCGGDGSGGITACLLRMNP-------------TSRGIFNS 353 (675)
T ss_pred ccccCcchhhhhhhcccccchhhHHHHHHhcCCC-c-ceeEEEecCchHHHHHHHHhCc-------------ccceeeec
Confidence 3455666666666666777889999999999853 2 4568888999999999987765 34444333
Q ss_pred CCCCC--------C--------CCCce----------EeecCCCChhhHHH---HHHhcCCCcccEEEeCCCCCCCCCCC
Q 025715 86 LQPMA--------P--------IEGVI----------QVQGDITNARTAEV---VIRHFDGCKADLVVCDGAPDVTGLHD 136 (249)
Q Consensus 86 i~~~~--------~--------~~~v~----------~~~gDi~~~~~~~~---i~~~~~~~~~DlVlsD~~~~~~g~~~ 136 (249)
+.++. + +.+.. -.--|++++++=+. +.+.. +-++|+|++||. +
T Consensus 354 LL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~TW~YF~~l~~~~-~~~idLiv~DmE--V----- 425 (675)
T PF14314_consen 354 LLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPETWKYFVSLKKQH-NLSIDLIVMDME--V----- 425 (675)
T ss_pred cccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccHHHHHHHHHhhc-CCcccEEEEece--e-----
Confidence 32211 1 00100 01236777654332 22222 257999999995 2
Q ss_pred cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC--C-CHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCC
Q 025715 137 MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--K-DTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE 213 (249)
Q Consensus 137 ~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~--~-~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~ 213 (249)
.|.....+.-...-..+..+|.++|++++|++-+ . ....++..+.++|++|.++.+..|-..++|+|+||++.+...
T Consensus 426 ~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 426 RDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP 505 (675)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC
Confidence 2332222333334556778999999999999843 2 233577778889999999999999999999999999988866
Q ss_pred CCCchhhh
Q 025715 214 GFNPKDLH 221 (249)
Q Consensus 214 ~~~~~~~~ 221 (249)
++.+++
T Consensus 506 --~~~~~~ 511 (675)
T PF14314_consen 506 --DRPYVD 511 (675)
T ss_pred --CcCCCC
Confidence 444443
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-08 Score=89.71 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=66.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------C--CCceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I--EGVIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~--~~v~~~~gDi~~~~~~ 108 (249)
+++ .+|||+|||+|.++.++++. + .+|+|+|+++... . .++++..+|+....
T Consensus 119 ~~~-~~vLDlGcG~G~~~~~la~~-g--------------~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-- 180 (287)
T PRK12335 119 VKP-GKALDLGCGQGRNSLYLALL-G--------------FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-- 180 (287)
T ss_pred cCC-CCEEEeCCCCCHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc--
Confidence 345 49999999999999999874 3 6999999997420 0 15666777776532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+ +++||+|++...+... +. +.....+..+.++|+|||.+++.
T Consensus 181 ------~-~~~fD~I~~~~vl~~l-----~~----~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 ------I-QEEYDFILSTVVLMFL-----NR----ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred ------c-cCCccEEEEcchhhhC-----CH----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 4689999998654221 11 11235678889999999997653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.4e-08 Score=81.63 Aligned_cols=100 Identities=24% Similarity=0.253 Sum_probs=71.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C---CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~---~~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..++...+ ...+++++|+++.. . ..++.++.+|+.+..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~------------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 116 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG------------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP- 116 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC------------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-
Confidence 3678999999999999999988764 24799999998732 0 135778888887643
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+..++||+|++....... .+ ....+..+.++|+|||.+++..+..
T Consensus 117 -------~~~~~~D~I~~~~~l~~~----~~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 117 -------FPDNSFDAVTIAFGLRNV----PD-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred -------CCCCCccEEEEecccccC----CC-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 234689999986532211 11 1246778889999999998865543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=85.74 Aligned_cols=92 Identities=21% Similarity=0.327 Sum_probs=65.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+++|++|||+|||+|..+..+++..+ +.+.|++||+.+.. .+.+|.++.+|...-..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg------------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG------------PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS------------TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC------------ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 58999999999999999999999886 46789999998831 24588999999764221
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....||.|++.++... .. ....+.|++||+||+-+
T Consensus 138 --------~~apfD~I~v~~a~~~-----ip------------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 --------EEAPFDRIIVTAAVPE-----IP------------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp --------GG-SEEEEEESSBBSS-------------------HHHHHTEEEEEEEEEEE
T ss_pred --------cCCCcCEEEEeeccch-----HH------------HHHHHhcCCCcEEEEEE
Confidence 2357999999875321 11 12357899999999844
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.4e-08 Score=80.49 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=68.0
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHH
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.+.++.+|||+|||+|.++..+++..+ ...++|+|+++.. ..+++.+.++|+.++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-------------~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~------ 100 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-------------FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP------ 100 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCC------
Confidence 345778999999999999999987653 4799999999842 145677888988762
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|++....... +.. ....++..+.+++ ++.+++..+
T Consensus 101 ---~~~~sfD~V~~~~vL~hl-----~p~----~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 101 ---FKDNFFDLVLTKGVLIHI-----NPD----NLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ---CCCCCEEEEEECChhhhC-----CHH----HHHHHHHHHHhhc--CcEEEEEEe
Confidence 346799999998754321 111 1234566666666 455555443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-08 Score=82.60 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=67.4
Q ss_pred hhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCC
Q 025715 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDIT 103 (249)
Q Consensus 34 ~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~ 103 (249)
+..+.+++ .++||||||.|.-+.+++++ | ..|+|+|+++... -. .++....|+.
T Consensus 24 ~a~~~~~~-g~~LDlgcG~GRNalyLA~~-G--------------~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~ 87 (192)
T PF03848_consen 24 EAVPLLKP-GKALDLGCGEGRNALYLASQ-G--------------FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLN 87 (192)
T ss_dssp HHCTTS-S-SEEEEES-TTSHHHHHHHHT-T---------------EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC
T ss_pred HHHhhcCC-CcEEEcCCCCcHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecch
Confidence 33455555 59999999999999999976 2 6999999998431 12 2667788887
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.. ++ +.||+|+|...+... +. +....++......++|||.+++.++
T Consensus 88 ~~~--------~~-~~yD~I~st~v~~fL-----~~----~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 88 DFD--------FP-EEYDFIVSTVVFMFL-----QR----ELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp CBS---------T-TTEEEEEEESSGGGS------G----GGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcc--------cc-CCcCEEEEEEEeccC-----CH----HHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 753 23 579999987544321 11 1123456677889999999998655
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-08 Score=84.82 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCCce--EeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVI--QVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~v~--~~~gDi~~~~~~~~ 110 (249)
+|.+|||+|||=|.+++.+++. | ..|+|+|+++... ..++. +.+..+.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-G--------------a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed------ 117 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-G--------------ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED------ 117 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-C--------------CeeEEecCChHHHHHHHHhhhhccccccchhhhHHH------
Confidence 7899999999999999999864 3 7999999998431 12332 22222222
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.. .+++||+|+|--.... ..++ ...+..+.+++||||.+++.+..
T Consensus 118 l~~--~~~~FDvV~cmEVlEH----v~dp-------~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 118 LAS--AGGQFDVVTCMEVLEH----VPDP-------ESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHh--cCCCccEEEEhhHHHc----cCCH-------HHHHHHHHHHcCCCcEEEEeccc
Confidence 221 2379999999532211 1122 24678889999999999988763
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.7e-08 Score=86.39 Aligned_cols=91 Identities=25% Similarity=0.265 Sum_probs=65.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++..+ ..+.|+++|+++.. ..+++.++++|.....
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~------------~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-- 144 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVG------------EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-- 144 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc--
Confidence 5789999999999999999998765 34689999999731 2356888889875421
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
....+||+|+++.+. .+ ......+.|+|||.+++.+
T Consensus 145 ------~~~~~fD~Ii~~~g~-----~~------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 ------PEFAPYDVIFVTVGV-----DE------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ------cccCCccEEEECCch-----HH------------hHHHHHHhcCCCCEEEEEe
Confidence 122579999987431 11 1123467899999999854
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.3e-08 Score=92.10 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i 111 (249)
++.+|||+|||+|.++..++++. .+|+|+|+++.. ..++++++++|+.+...
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---------------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~---- 97 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---------------GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL---- 97 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---------------CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc----
Confidence 56799999999999999998763 589999998732 13467888999864321
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.++.++||+|+++.+..... +. ....++..+.++|||||.++++.
T Consensus 98 --~~~~~~fD~I~~~~~l~~l~----~~-----~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 --NISDGSVDLIFSNWLLMYLS----DK-----EVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred --CCCCCCEEEEehhhhHHhCC----HH-----HHHHHHHHHHHhcCCCeEEEEEe
Confidence 13457899999986543211 11 12457888999999999999863
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.5e-08 Score=83.26 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=77.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
++||.+||+.|+|+|++|.++++.++ +.|+|+..|..+.. .+ .+|++.++|+.+.-
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~------------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVG------------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHT------------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhC------------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 38999999999999999999999887 67999999998632 23 46888899997532
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc-cCCCEEEEEEecCCCHHHHHHHHhcC-C
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL-KEGGKFIAKIFRGKDTSLLYCQLKLF-F 184 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L-k~gG~lv~k~~~~~~~~~l~~~l~~~-f 184 (249)
. ...+ +..+|.|+.|+.-.+ .++..+.+.| ++||.+++-.-.-+........|+.. |
T Consensus 106 ~----~~~~-~~~~DavfLDlp~Pw----------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 106 F----DEEL-ESDFDAVFLDLPDPW----------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp -----STT--TTSEEEEEEESSSGG----------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred c----cccc-cCcccEEEEeCCCHH----------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 1 0011 257999999985332 2567788999 89999987432223344444555543 6
Q ss_pred CeeEE
Q 025715 185 PVVTF 189 (249)
Q Consensus 185 ~~v~~ 189 (249)
..+..
T Consensus 165 ~~i~~ 169 (247)
T PF08704_consen 165 TDIET 169 (247)
T ss_dssp EEEEE
T ss_pred eeeEE
Confidence 55443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.3e-08 Score=78.97 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=56.1
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHH
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++||.+|||||||.|....++.+.. +...+|+|+++... -.|+.++++|+.+- ..
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--------------~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g------L~ 69 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--------------QVDGYGVEIDPDNVAACVARGVSVIQGDLDEG------LA 69 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--------------CCeEEEEecCHHHHHHHHHcCCCEEECCHHHh------Hh
Confidence 46899999999999999999888753 47899999998542 26888999998652 23
Q ss_pred hcCCCcccEEEeC
Q 025715 114 HFDGCKADLVVCD 126 (249)
Q Consensus 114 ~~~~~~~DlVlsD 126 (249)
.+++++||.|+..
T Consensus 70 ~f~d~sFD~VIls 82 (193)
T PF07021_consen 70 DFPDQSFDYVILS 82 (193)
T ss_pred hCCCCCccEEehH
Confidence 5788999999975
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-08 Score=86.25 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=98.7
Q ss_pred CCCChhHHHHHHhccchhhhhhHHhhhhhcCcc---------cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCC
Q 025715 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF---------EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD 77 (249)
Q Consensus 7 ~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~---------~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~ 77 (249)
..+++| +...+.|+..|..-++..+-.--+++ +++..++|||||-||-..-+-+. +
T Consensus 75 ~Va~HY-N~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA-g------------- 139 (389)
T KOG1975|consen 75 EVAEHY-NERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA-G------------- 139 (389)
T ss_pred HHHHHH-HHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh-c-------------
Confidence 345664 77888888777776666554433432 68999999999999965544322 1
Q ss_pred CCeEEEecCCCCCC------------C-C----CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHH
Q 025715 78 LPLIVAIDLQPMAP------------I-E----GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 140 (249)
Q Consensus 78 ~~~vvavDi~~~~~------------~-~----~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~ 140 (249)
-+.++++||..... . + .+.++.||.+.......+ + +++.+||+|-|--++.+. +...
T Consensus 140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~-e-~~dp~fDivScQF~~HYa----Fete 213 (389)
T KOG1975|consen 140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL-E-FKDPRFDIVSCQFAFHYA----FETE 213 (389)
T ss_pred ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc-c-CCCCCcceeeeeeeEeee----eccH
Confidence 36899999987531 1 1 367899999875432221 1 244569999987765543 2222
Q ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 141 VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 141 ~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
.+ .+.+|..+.++|+|||.|+-++ ++...|++.|+.
T Consensus 214 e~---ar~~l~Nva~~LkpGG~FIgTi---Pdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 214 ES---ARIALRNVAKCLKPGGVFIGTI---PDSDVIIKRLRA 249 (389)
T ss_pred HH---HHHHHHHHHhhcCCCcEEEEec---CcHHHHHHHHHh
Confidence 22 3567889999999999999865 555666666654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=79.82 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=64.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++.. ++|+++|+++.. .+.++++..+|..+..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---------------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 139 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---------------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-- 139 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---------------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--
Confidence 578999999999999998777653 489999998732 2346788888875421
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...++||+|+++..+.. ......+.|+|||.+++-+.
T Consensus 140 ------~~~~~fD~I~~~~~~~~-----------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 ------PAYAPFDRILVTAAAPE-----------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ------CcCCCcCEEEEccCchh-----------------hhHHHHHhcCCCcEEEEEEc
Confidence 12368999999864311 11234679999999998654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-08 Score=85.35 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------CCCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~~~~v~~~~gDi~~~~~ 107 (249)
.|.+||||.|-+|+|+.+++.. | ..+|+.||.+... ....++++++|+.+.-
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-G-------------A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l- 187 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-G-------------AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL- 187 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-T-------------ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH-
T ss_pred CCCceEEecCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH-
Confidence 5799999999999999988752 2 3589999998732 1246788999987632
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC-CHHHHHHHHh
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQLK 181 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~-~~~~l~~~l~ 181 (249)
+.+. ..++||+|++|++.-..+.+ +. .+-+..++..+.++|+|||.|++..+.+. ....+...+.
T Consensus 188 -~~~~---~~~~fD~IIlDPPsF~k~~~--~~---~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 188 -KRLK---KGGRFDLIILDPPSFAKSKF--DL---ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVA 253 (286)
T ss_dssp -HHHH---HTT-EEEEEE--SSEESSTC--EH---HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHH
T ss_pred -HHHh---cCCCCCEEEECCCCCCCCHH--HH---HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHH
Confidence 2232 23689999999853333322 21 23355678889999999999987666433 3344444443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=83.11 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC------------------
Q 025715 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI------------------ 92 (249)
Q Consensus 41 ~g~~vLDLG~gpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~------------------ 92 (249)
++.+|+|+|||+|- ++..+++..+... ....+|+|+|+++.. ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~--------~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf 170 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAR--------EPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYF 170 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcC--------CCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhE
Confidence 45799999999995 4545555443100 024689999999831 01
Q ss_pred --------------CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc
Q 025715 93 --------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 93 --------------~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (249)
.+|+|.++|+.+.+ ...++||+|+|...... .+. .....++....+.|+
T Consensus 171 ~~~~~~~~v~~~ir~~V~F~~~dl~~~~--------~~~~~fD~I~crnvl~y-----f~~----~~~~~~l~~l~~~L~ 233 (264)
T smart00138 171 SRVEDKYRVKPELKERVRFAKHNLLAES--------PPLGDFDLIFCRNVLIY-----FDE----PTQRKLLNRFAEALK 233 (264)
T ss_pred EeCCCeEEEChHHhCcCEEeeccCCCCC--------CccCCCCEEEechhHHh-----CCH----HHHHHHHHHHHHHhC
Confidence 14778888888753 23468999999643321 121 113457888899999
Q ss_pred CCCEEEEE
Q 025715 159 EGGKFIAK 166 (249)
Q Consensus 159 ~gG~lv~k 166 (249)
|||.|++-
T Consensus 234 pGG~L~lg 241 (264)
T smart00138 234 PGGYLFLG 241 (264)
T ss_pred CCeEEEEE
Confidence 99999984
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=94.97 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------C----------------CC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I----------------EG 94 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~----------------~~ 94 (249)
+.+|||||||+|..+..++++.+ ..+|+|+|+++.+. + .+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-------------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~r 185 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-------------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDR 185 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccccccc
Confidence 46899999999999999998764 47999999998420 1 25
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCC--------CCcC-------------------HHHHHHHHH
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL--------HDMD-------------------EFVQSQLIL 147 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~--------~~~~-------------------~~~~~~l~~ 147 (249)
++++++|+.+.- .. ...+||+|+||++--..+. ...+ ...-+.+++
T Consensus 186 V~f~~sDl~~~~------~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr 258 (1082)
T PLN02672 186 VEFYESDLLGYC------RD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIA 258 (1082)
T ss_pred EEEEECchhhhc------cc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHH
Confidence 788999987531 00 1136999999974211110 0000 012345678
Q ss_pred HHHHHHHHhccCCCEEEEEEecCCCHHHHH-HHHhc-CCCeeEEecC
Q 025715 148 AGLTVVTHVLKEGGKFIAKIFRGKDTSLLY-CQLKL-FFPVVTFAKP 192 (249)
Q Consensus 148 ~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~-~~l~~-~f~~v~~~kP 192 (249)
.++..+.++|+|||.+++.+-. ..-..+. .++++ -|+.+.+++-
T Consensus 259 ~i~~~a~~~L~pgG~l~lEiG~-~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 259 RAVEEGISVIKPMGIMIFNMGG-RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHHHHCCCCeeEEeee
Confidence 8999999999999999986642 2222333 24443 3766666543
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=66.10 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=66.6
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|+|||+|.++..+++ . ...+++++|+++.. ....++++.+|+.+...
T Consensus 1 ~ildig~G~G~~~~~~~~-~-------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-------------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-------------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----
Confidence 589999999999998887 2 24799999998732 12456778888877532
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
....++|+|+++...... .......+..+.+.|++||.+++.
T Consensus 62 --~~~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 --EADESFDVIISDPPLHHL----------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --ccCCceEEEEEccceeeh----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 134689999998754321 112345677888899999999874
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=76.17 Aligned_cols=125 Identities=23% Similarity=0.254 Sum_probs=79.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC-ceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~-v~~~~gDi~~~~~ 107 (249)
+...+|||||||.|.+..-|++.-- .+..+|||.++.+ ..++ ++|.+.||+++.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf-------------~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~- 131 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGF-------------QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD- 131 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcC-------------CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-
Confidence 3445999999999999988887532 3568999999843 1344 889999999974
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCC-CcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 185 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~-~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~ 185 (249)
+..++||+|+--|..+..+.. +....+ ..+ -+....++|+|||.|||..+ .....++...+... |+
T Consensus 132 -------~~~~qfdlvlDKGT~DAisLs~d~~~~r-~~~---Y~d~v~~ll~~~gifvItSC-N~T~dELv~~f~~~~f~ 199 (227)
T KOG1271|consen 132 -------FLSGQFDLVLDKGTLDAISLSPDGPVGR-LVV---YLDSVEKLLSPGGIFVITSC-NFTKDELVEEFENFNFE 199 (227)
T ss_pred -------ccccceeEEeecCceeeeecCCCCcccc-eee---ehhhHhhccCCCcEEEEEec-CccHHHHHHHHhcCCeE
Confidence 245789999876644322211 000000 011 13455689999999999654 34555666655543 55
Q ss_pred eeEEe
Q 025715 186 VVTFA 190 (249)
Q Consensus 186 ~v~~~ 190 (249)
.+..+
T Consensus 200 ~~~tv 204 (227)
T KOG1271|consen 200 YLSTV 204 (227)
T ss_pred EEEee
Confidence 44443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-07 Score=76.42 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=85.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CC------CCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI------EGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~------~~v~~~~gDi~~~~ 106 (249)
+.|.+|||.|.|=|..+..+.++. ..+|+.|+.+|.- +. .+++.+.||+.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--------------A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e-- 196 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--------------AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE-- 196 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--------------CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--
Confidence 358999999999999998888763 2489999888742 11 257888999865
Q ss_pred hHHHHHHhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCC------C-HHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGK------D-TSLLY 177 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~------~-~~~l~ 177 (249)
+.+.|.+.+||+|+.|++ ++..| +|+ +....+.+++|||||.+.--+-.+. + ...+.
T Consensus 197 ----~V~~~~D~sfDaIiHDPPRfS~Ag----------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa 262 (287)
T COG2521 197 ----VVKDFDDESFDAIIHDPPRFSLAG----------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVA 262 (287)
T ss_pred ----HHhcCCccccceEeeCCCccchhh----------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHH
Confidence 345688899999999984 33222 221 4466778999999999885444332 2 33566
Q ss_pred HHHhcC-CCeeEEe
Q 025715 178 CQLKLF-FPVVTFA 190 (249)
Q Consensus 178 ~~l~~~-f~~v~~~ 190 (249)
..|++. |..|...
T Consensus 263 ~RLr~vGF~~v~~~ 276 (287)
T COG2521 263 ERLRRVGFEVVKKV 276 (287)
T ss_pred HHHHhcCceeeeee
Confidence 666664 8776654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-08 Score=81.91 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CC-----CceEeecCCCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IE-----GVIQVQGDITN 104 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~-----~v~~~~gDi~~ 104 (249)
|++|||+|||.|-.|+.|++. + ..|+|+|+++.. + .. .+.+...|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl-g--------------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-G--------------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred CceEEEeccCccccchhhHhh-C--------------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence 488999999999999999964 3 799999998732 1 11 23344444433
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+. +.||.|+|-.... | .......+....++|||||.+++.+.
T Consensus 155 ----------~~-~~fDaVvcsevle--------H---V~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 155 ----------LT-GKFDAVVCSEVLE--------H---VKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred ----------cc-cccceeeeHHHHH--------H---HhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 22 4699999854211 1 11123467788899999999999765
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-07 Score=78.45 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=68.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC---------------CCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---------------EGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~---------------~~v~ 96 (249)
.++.+|||+|||.|..+.+++++ | ..|+|||+++.+ .+ .+++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G--------------~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G--------------HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C--------------CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 46779999999999999999875 3 689999999842 01 2477
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++++|+.+.+. ...+.||.|+--+.+.. ... ..-...+....++|||||.+++.++
T Consensus 98 ~~~~D~~~~~~-------~~~~~fD~i~D~~~~~~-----l~~----~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 98 IFCGDFFALTA-------ADLGPVDAVYDRAALIA-----LPE----EMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred EEEccCCCCCc-------ccCCCcCEEEechhhcc-----CCH----HHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 78999987542 01246899987553321 111 1123467788999999998776555
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.5e-07 Score=79.07 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=66.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCC--ceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEG--VIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~--v~~~~gDi~~~~~ 107 (249)
.++.+|||||||+|.++..+++.+. ....|+++|+++.. ..++ +..+++|+.+...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~------------~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALR------------QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhc------------cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 5678999999999999999998763 23689999999832 1244 4567999987421
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+..........+++++... .+.+... ....+..+.+.|+|||.|++-+-
T Consensus 130 ---~~~~~~~~~~~~~~~gs~~-----~~~~~~e----~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 130 ---LPPEPAAGRRLGFFPGSTI-----GNFTPEE----AVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ---hhcccccCCeEEEEecccc-----cCCCHHH----HHHHHHHHHHhcCCCCEEEEecc
Confidence 1111111122233333221 2233222 23567888899999999998553
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=78.85 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=70.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.-+..++..++ +.++|+++|+++.. .+ .+++++.||+.+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~------------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP------------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 4678999999999998888887765 46899999999842 12 3578889998652
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+..+......++||+|+.|+.. .. +...+..+.++|+|||.+++
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k--------~~------y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADK--------PN------YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCH--------HH------HHHHHHHHHHhcCCCeEEEE
Confidence 2223221123689999999631 11 12356778899999999886
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-07 Score=80.38 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=81.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C------CCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~------~~~v~~~~gDi~~ 104 (249)
.+..+||++|+|.|+.+..+++. + ...+|+.||+++.. . -++++++.+|...
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~------------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-S------------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-C------------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH
Confidence 45689999999999999888765 3 23689999998731 0 2468888888654
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEec----CCCHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFR----GKDTSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~----~~~~~~l~~~ 179 (249)
. + +...+++||+|++|..... +. . ..| ....++.+.+.|+|||.+++..-. ......+...
T Consensus 157 ~-----l-~~~~~~~yDvIi~D~~dp~-~~---~----~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~t 222 (308)
T PLN02366 157 F-----L-KNAPEGTYDAIIVDSSDPV-GP---A----QELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAI 222 (308)
T ss_pred H-----H-hhccCCCCCEEEEcCCCCC-Cc---h----hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHH
Confidence 2 1 1223468999999975322 11 1 112 245678889999999999874322 2224456667
Q ss_pred HhcCC-CeeEE
Q 025715 180 LKLFF-PVVTF 189 (249)
Q Consensus 180 l~~~f-~~v~~ 189 (249)
++..| ..+..
T Consensus 223 l~~~F~~~v~~ 233 (308)
T PLN02366 223 CRETFKGSVNY 233 (308)
T ss_pred HHHHCCCceeE
Confidence 77778 45544
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-07 Score=74.15 Aligned_cols=92 Identities=12% Similarity=0.197 Sum_probs=63.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++ . .+|+++|+++.. ...+++++++|+.+..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~--------------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~---- 72 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-A--------------ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD---- 72 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-C--------------CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC----
Confidence 46789999999999999999876 3 689999999732 1246888999997753
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+..+|.|++|...+. . .+++...+.. ..+.++|.+++.
T Consensus 73 ----~~~~~~d~vi~n~Py~~------~----~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 73 ----LPKLQPYKVVGNLPYNI------S----TPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred ----ccccCCCEEEECCCccc------H----HHHHHHHHhc--CCCcceEEEEEE
Confidence 23346999999975432 1 1222233332 224577887764
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=81.91 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=69.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~~~gDi~~~~~ 107 (249)
++++.+|||+|||+|.++..++++.+ ..+++++|+.++. .+ .+++++.+|+.+.+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP-------------ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC-------------CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 35778999999999999999998874 5789999974321 12 35788999987532
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++ .+|+|+...... +.+.. ....+++.+.+.|+|||++++..+
T Consensus 213 -------~~--~~D~v~~~~~lh-----~~~~~----~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 -------YP--EADAVLFCRILY-----SANEQ----LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -------CC--CCCEEEeEhhhh-----cCChH----HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 22 369987543221 12211 124578899999999999998644
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=75.06 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CC-CceEe----ecCCCCh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE-GVIQV----QGDITNA 105 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~-~v~~~----~gDi~~~ 105 (249)
+..+||+|||+|+.+..+++.++ .+.|+|+|.++.+. +. ++..+ ++|..++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-------------~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-------------QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE 215 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-------------CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc
Confidence 45799999999999999999885 58999999998531 12 23333 4454443
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCC-CCC-------cCHHH-------HHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTG-LHD-------MDEFV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g-~~~-------~~~~~-------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
.. +..++.|+++||++.-... .+. .+... -.+.+...+..|.+.|+|||.+.+.+-.-
T Consensus 216 ~~-------l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 216 HP-------LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred cc-------cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 21 3457899999998421111 100 11111 13345667889999999999999876521
Q ss_pred CCHHHHH-----HHHhcCCCeeEEecCCCCCCCCceEEEEE
Q 025715 171 KDTSLLY-----CQLKLFFPVVTFAKPKSSRNSSIEAFAVC 206 (249)
Q Consensus 171 ~~~~~l~-----~~l~~~f~~v~~~kP~~sr~~s~E~y~v~ 206 (249)
.....+. .....++..+.++...+.|+ ++++.
T Consensus 289 ~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~----Rfv~i 325 (328)
T KOG2904|consen 289 KEHSYLVRIWMISLKDDSNGKAAVVSDFAGRP----RFVII 325 (328)
T ss_pred ccCcHHHHHHHHhchhhccchhheeecccCCc----ceEEE
Confidence 2111111 12233466677766555553 55554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.2e-07 Score=75.35 Aligned_cols=102 Identities=18% Similarity=0.110 Sum_probs=64.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..+++..... +...+|+|+|+++.. ...++++..+|....+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~---------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~----- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRD---------GLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELV----- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhC---------CCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccc-----
Confidence 466799999999999999888754210 024599999999842 1235556555544322
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
..+++||+|+++...... +... ...++..+.++++ |.+++..+.
T Consensus 125 ---~~~~~fD~V~~~~~lhh~-----~d~~----~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 125 ---AEGERFDVVTSNHFLHHL-----DDAE----VVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred ---ccCCCccEEEECCeeecC-----ChHH----HHHHHHHHHHhcC--eeEEEeccc
Confidence 135789999998754332 2111 2356777888887 445544443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-06 Score=75.38 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=58.9
Q ss_pred HhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeec
Q 025715 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQG 100 (249)
Q Consensus 30 ~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~g 100 (249)
.|+.+.+. .++|..+||++||.|+.|.++++.++ +.++|+|+|+++.+ ...+++++++
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~------------~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~ 75 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLG------------PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHG 75 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCC------------CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeC
Confidence 34444443 26788999999999999999999875 46899999999843 1236888999
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCC
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~ 127 (249)
|..+... +... .-.++|.|+.|.
T Consensus 76 ~f~~l~~---~l~~-~~~~vDgIl~DL 98 (296)
T PRK00050 76 NFSNLKE---VLAE-GLGKVDGILLDL 98 (296)
T ss_pred CHHHHHH---HHHc-CCCccCEEEECC
Confidence 8877532 1111 113799999995
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.7e-07 Score=79.41 Aligned_cols=137 Identities=17% Similarity=0.108 Sum_probs=93.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeec-CCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQG-DITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~g-Di~~~~ 106 (249)
.++|..|||=-||||++...+. .+| .+++|.|++.-. .++...++.+ |+++.+
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag-l~G--------------~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG-LMG--------------ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred cccCCEeecCcCCccHHHHhhh-hcC--------------ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 3789999999999999987765 455 799999998622 0233444555 888865
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCC-cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHD-MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~-~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~ 185 (249)
+.+.++|.|++|++-. ... .......+|+..+++.+.++|++||.+++-... ....+.....|+
T Consensus 260 --------l~~~~vdaIatDPPYG---rst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~~~~f~ 324 (347)
T COG1041 260 --------LRDNSVDAIATDPPYG---RSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR----DPRHELEELGFK 324 (347)
T ss_pred --------CCCCccceEEecCCCC---cccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC----cchhhHhhcCce
Confidence 4556799999998532 211 111224678899999999999999999986542 222233344577
Q ss_pred eeEEecCCCCCCCCceEEEE
Q 025715 186 VVTFAKPKSSRNSSIEAFAV 205 (249)
Q Consensus 186 ~v~~~kP~~sr~~s~E~y~v 205 (249)
-+..+.-...+.-.+.+|++
T Consensus 325 v~~~~~~~~H~sLtR~i~v~ 344 (347)
T COG1041 325 VLGRFTMRVHGSLTRVIYVV 344 (347)
T ss_pred EEEEEEEeecCceEEEEEEE
Confidence 77666555555555666644
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.7e-06 Score=67.31 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~~~~~~~~i 111 (249)
..-++++|||+|..+..+++..+ +.....+.|++|.+. .. ++..++.|+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~------------~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~------- 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG------------PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS------- 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC------------CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-------
Confidence 57899999999999999999887 467899999999652 12 23455666543
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCc-CHHH---------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDM-DEFV---------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~-~~~~---------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~ 181 (249)
.+..+++|+++-|++...+..... ++.. -.+.....+...-.+|.|.|.|.+-..+.....+++.+++
T Consensus 105 --~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 105 --GLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE 182 (209)
T ss_pred --hhccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence 345589999999985433221111 1110 1223445566667799999999997777777888888776
Q ss_pred cC-CCeeEEecCCCCCCCCceEEEEEeec
Q 025715 182 LF-FPVVTFAKPKSSRNSSIEAFAVCENY 209 (249)
Q Consensus 182 ~~-f~~v~~~kP~~sr~~s~E~y~v~~g~ 209 (249)
.. |....+. .|....|...|-+.+
T Consensus 183 ~~g~~~~~~~----~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 183 KKGYGVRIAM----QRKAGGETLSILKFT 207 (209)
T ss_pred hcccceeEEE----EEecCCceEEEEEEE
Confidence 54 4433322 245555665555544
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=74.77 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C------CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~------~~~v~~~~gDi~~~ 105 (249)
.+.+||++|||.|+.+..+++..+ ..+|+++|+++.. . .++++++.+|...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~-------------~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~- 137 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS-------------VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK- 137 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC-------------cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH-
Confidence 456999999999999988876532 3689999999732 0 1345556555433
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCC----HHHHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQL 180 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~~~l~~~l 180 (249)
.+. . ..++||+|++|..... +. .. .+ ....+..+.+.|+|||.+++....+.. ...+...+
T Consensus 138 ----~l~-~-~~~~yDvIi~D~~~~~-~~---~~----~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl 203 (270)
T TIGR00417 138 ----FLA-D-TENTFDVIIVDSTDPV-GP---AE----TLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDV 203 (270)
T ss_pred ----HHH-h-CCCCccEEEEeCCCCC-Cc---cc----chhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHH
Confidence 121 1 1368999999975322 11 10 11 135677888999999999985332221 23344556
Q ss_pred hcCCCeeEEecCC-CCCCCCceEEEEEee
Q 025715 181 KLFFPVVTFAKPK-SSRNSSIEAFAVCEN 208 (249)
Q Consensus 181 ~~~f~~v~~~kP~-~sr~~s~E~y~v~~g 208 (249)
+..|..+..+... .+-+...-.|++|..
T Consensus 204 ~~~F~~v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 204 KEAFPITEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred HHHCCCeEEEEEEcCccccchhEEEEEEC
Confidence 6778888765321 222222236777754
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=72.35 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=64.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||||||+|.++..++.+.. .+|+++|+++.. .+.+++++++|+.+.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a--------------~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~--- 114 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA--------------AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF--- 114 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC--------------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH---
Confidence 3578999999999999986555432 699999999742 134678888887542
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+. . ...+||+|++|++.. .|. . ......+.. ..+|+|+|.+++....
T Consensus 115 --l~-~-~~~~fDlV~~DPPy~-~g~---~-----~~~l~~l~~-~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 115 --LA-Q-PGTPHNVVFVDPPFR-KGL---L-----EETINLLED-NGWLADEALIYVESEV 161 (199)
T ss_pred --Hh-h-cCCCceEEEECCCCC-CCh---H-----HHHHHHHHH-CCCcCCCcEEEEEecC
Confidence 11 1 234699999998632 221 1 111122222 3568999988886543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=75.28 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=71.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.+..+||++|++.|..+.+++..++ ++++|+++|.++.. .+ .+++++.||..+ .
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~------------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~ 182 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLP------------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--S 182 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--H
Confidence 3568999999999999999998776 46899999999842 12 367888898754 2
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+..+...-..++||+|+.|+.. .. +...++.+.++|+|||.+++-
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K--------~~------Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK--------RM------YQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH--------HH------HHHHHHHHHHhcCCCcEEEEe
Confidence 2222211123589999999741 11 234577788999999999863
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.4e-07 Score=76.21 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=71.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--C-------CCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P-------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~-------~~~v~~~~gDi~~~~~~~ 109 (249)
+++|.+||-||+++|....+++.-.+ ++|.|+||+.++.. . .+|+-.+-+|.+.+....
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg------------~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG------------PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR 138 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT------------TTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT
T ss_pred CCCCCEEEEecccCCCccchhhhccC------------CCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh
Confidence 58999999999999999999999987 67999999999832 1 378878889999886532
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
. +- +.+|+|++|.+-. +.. +.+...|...||+||.+++.+
T Consensus 139 ~----lv-~~VDvI~~DVaQp-------~Qa------~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 139 M----LV-EMVDVIFQDVAQP-------DQA------RIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp T----TS---EEEEEEE-SST-------THH------HHHHHHHHHHEEEEEEEEEEE
T ss_pred c----cc-ccccEEEecCCCh-------HHH------HHHHHHHHhhccCCcEEEEEE
Confidence 2 22 4899999997411 211 235667788999999999754
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-07 Score=74.29 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=52.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.++.+|||+|||+|.++..+++..+ ..++|+|+++.. ...+++++++|+.+.. ..
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--------------~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l------~~ 70 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--------------VRGYGIEIDQDGVLACVARGVNVIQGDLDEGL------EA 70 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--------------CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcc------cc
Confidence 45788999999999999988876533 578999998732 1246788888876410 01
Q ss_pred cCCCcccEEEeCCCCC
Q 025715 115 FDGCKADLVVCDGAPD 130 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~ 130 (249)
+.+++||+|++..+..
T Consensus 71 ~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQ 86 (194)
T ss_pred cCCCCcCEEEEhhHhH
Confidence 3457899999987543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=72.18 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=67.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|++||++|||+|.-+..+++.. ++|+++|+.+.. .+.||.+++||-..-..
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~---------------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~- 134 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV---------------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP- 134 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh---------------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-
Confidence 689999999999999999999875 599999998731 35689999999876321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
....||.|+..++.+. ... .-.+.||+||++|+=+-
T Consensus 135 -------~~aPyD~I~Vtaaa~~-----vP~------------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 -------EEAPYDRIIVTAAAPE-----VPE------------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -------CCCCcCEEEEeeccCC-----CCH------------HHHHhcccCCEEEEEEc
Confidence 2368999998875432 121 12568999999998543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=83.02 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=77.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----C-------------CCCceEeecC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-------------IEGVIQVQGD 101 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~-------------~~~v~~~~gD 101 (249)
++..+|||+|||.|..+..++++ + ...+|++||+++.. . .++++++.+|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~------------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D 362 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-P------------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD 362 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-C------------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh
Confidence 45689999999999999888764 3 23699999998721 1 1467777888
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEec----CCCHHHH
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFR----GKDTSLL 176 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~----~~~~~~l 176 (249)
..+. +. .. .++||+|++|..... + ... ..+ ....++.+.+.|+|||.+++.... .....++
T Consensus 363 a~~~-----l~-~~-~~~fDvIi~D~~~~~-~---~~~---~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i 428 (521)
T PRK03612 363 AFNW-----LR-KL-AEKFDVIIVDLPDPS-N---PAL---GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSI 428 (521)
T ss_pred HHHH-----HH-hC-CCCCCEEEEeCCCCC-C---cch---hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHH
Confidence 7542 11 22 368999999964221 1 110 111 134677888999999999986432 2224456
Q ss_pred HHHHhcC-C
Q 025715 177 YCQLKLF-F 184 (249)
Q Consensus 177 ~~~l~~~-f 184 (249)
...+++. |
T Consensus 429 ~~~l~~~gf 437 (521)
T PRK03612 429 EATLEAAGL 437 (521)
T ss_pred HHHHHHcCC
Confidence 6666665 6
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-07 Score=82.93 Aligned_cols=104 Identities=23% Similarity=0.177 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C---------------CCceEee
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---------------EGVIQVQ 99 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~---------------~~v~~~~ 99 (249)
++.+|||||||-||-..-+... .-..++|+|++.... + -...++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchhHHHHHhc--------------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheec
Confidence 7899999999999966655542 237999999986310 0 1245678
Q ss_pred cCCCChhhHHHHHHhcCC--CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 100 GDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 100 gDi~~~~~~~~i~~~~~~--~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+|..... +.+.+.. ..||+|-|-.++...- ..+. -.+..|..+...|+|||.|+.++..
T Consensus 128 ~D~f~~~----l~~~~~~~~~~FDvVScQFalHY~F---ese~----~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 128 ADCFSES----LREKLPPRSRKFDVVSCQFALHYAF---ESEE----KARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTCCSH----HHCTSSSTTS-EEEEEEES-GGGGG---SSHH----HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccccch----hhhhccccCCCcceeehHHHHHHhc---CCHH----HHHHHHHHHHHhcCCCCEEEEEecC
Confidence 8887643 3333444 4899999987665431 1221 2356788999999999999987653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=73.30 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=65.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..+++. + ..++++|+++... ...+.+..+|+.+..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 108 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-G--------------ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA--- 108 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--------------CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh---
Confidence 46789999999999999888764 2 5799999987421 113455556554321
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
. ...++||+|++.......+ +. ...+..+.++|+|||.+++..+.
T Consensus 109 ---~-~~~~~fD~Ii~~~~l~~~~----~~-------~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 109 ---A-EHPGQFDVVTCMEMLEHVP----DP-------ASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ---h-hcCCCccEEEEhhHhhccC----CH-------HHHHHHHHHHcCCCcEEEEEecC
Confidence 1 1246899999865433221 11 24678889999999999986553
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-06 Score=74.03 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCC--ceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEG--VIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~--v~~~~gDi~~~~~~~~ 110 (249)
.|.+|||+|||.|.++..++.+. ...|+|+|-++.-. +-+ .....-.+ .++.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G--------------A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl----gvE~ 176 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG--------------AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL----GVED 176 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC--------------CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc----chhh
Confidence 47899999999999998888763 36899999887320 111 11111111 1111
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.. .++||+|+|=|..... .++ ...|......|++||.||+.+.
T Consensus 177 Lp~---~~~FDtVF~MGVLYHr----r~P-------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 177 LPN---LGAFDTVFSMGVLYHR----RSP-------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred ccc---cCCcCEEEEeeehhcc----CCH-------HHHHHHHHHhhCCCCEEEEEEe
Confidence 111 3689999997754321 122 2457778889999999998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=72.48 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=75.2
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCce-EeecCCCChhhHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVI-QVQGDITNARTAEVV 111 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~-~~~gDi~~~~~~~~i 111 (249)
.||++|||||.--.++-.. +...|+.+|.++.. ..+++. |+.++..+.+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--------------p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~----- 139 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--------------PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP----- 139 (252)
T ss_pred ceEEecccCCCCcccccCC--------------CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc-----
Confidence 5799999999976655422 35799999999832 124555 7778776643
Q ss_pred HHhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 025715 112 IRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~ 185 (249)
.+.+.++|.|++-.. +++. +. ..+|....++|||||.+++-.+-......+..+++++++
T Consensus 140 --~l~d~s~DtVV~TlvLCSve-----~~-------~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~e 200 (252)
T KOG4300|consen 140 --QLADGSYDTVVCTLVLCSVE-----DP-------VKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAE 200 (252)
T ss_pred --ccccCCeeeEEEEEEEeccC-----CH-------HHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhc
Confidence 135789999998753 2221 22 357889999999999999866655555556666665544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.7e-06 Score=77.27 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=52.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||||||+|.++..+++.. .+|+|+|+++.+ .+.+++++++|+.+..
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-- 358 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---------------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-- 358 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh--
Confidence 577899999999999999998763 589999999842 2356889999986421
Q ss_pred HHHHHhcCCCcccEEEeCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~ 128 (249)
... .+.+.+||+|++|++
T Consensus 359 ~~~--~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 359 TDQ--PWALGGFDKVLLDPP 376 (443)
T ss_pred hhh--hhhcCCCCEEEECcC
Confidence 000 123457999999974
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=72.70 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+.+|||+|||+|.++..+++. + ..++++|+++.. ...++++..+|+.+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~--------------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-G--------------ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE-- 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-C--------------CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc--
Confidence 4689999999999999888764 2 469999998732 11246666676654221
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
-..++||+|++........ +. ...+..+.++|+|||.+++....
T Consensus 108 -----~~~~~~D~i~~~~~l~~~~----~~-------~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 108 -----KGAKSFDVVTCMEVLEHVP----DP-------QAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -----CCCCCccEEEehhHHHhCC----CH-------HHHHHHHHHhcCCCcEEEEEecC
Confidence 0136899999875432211 11 24678888999999999886553
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.4e-07 Score=73.63 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
...+||+|||.|.|...++...+ +..++|+|+.... .++|+.++++|....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~P-------------d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~----- 79 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNP-------------DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL----- 79 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHST-------------TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-----
T ss_pred CCeEEEecCCCCHHHHHHHHHCC-------------CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-----
Confidence 34999999999999999998864 6899999998732 468999999999873
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+...++++++|-|..+-+-++.-.+ + .-.++ ....+....++|+|||.+.+++
T Consensus 80 l~~~~~~~~v~~i~i~FPDPWpK~r---H-~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 80 LRRLFPPGSVDRIYINFPDPWPKKR---H-HKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp HHHHSTTTSEEEEEEES-----SGG---G-GGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcccCCchheEEEeCCCCCcccc---h-hhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 2234566899999887542222111 0 00111 2456778889999999998865
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=66.13 Aligned_cols=81 Identities=22% Similarity=0.143 Sum_probs=58.1
Q ss_pred hhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCC
Q 025715 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEG 94 (249)
Q Consensus 25 a~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~ 94 (249)
+++-|+.+. ..+. -.|.+|+|||||+|.++..++-. + ...|++||+.+.+. .-+
T Consensus 31 Aa~il~~a~-~~g~-l~g~~V~DlG~GTG~La~ga~~l-G-------------a~~V~~vdiD~~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 31 AAYILWVAY-LRGD-LEGKTVLDLGAGTGILAIGAALL-G-------------ASRVLAVDIDPEALEIARANAEELLGD 94 (198)
T ss_pred HHHHHHHHH-HcCC-cCCCEEEEcCCCcCHHHHHHHhc-C-------------CcEEEEEecCHHHHHHHHHHHHhhCCc
Confidence 344455544 2221 25679999999999999877754 3 37999999998531 235
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCC
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT 132 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~ 132 (249)
+.++.+|+++. ...+|.|+.|+++...
T Consensus 95 v~f~~~dv~~~-----------~~~~dtvimNPPFG~~ 121 (198)
T COG2263 95 VEFVVADVSDF-----------RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred eEEEEcchhhc-----------CCccceEEECCCCccc
Confidence 88999999874 2679999999877544
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=72.60 Aligned_cols=122 Identities=16% Similarity=0.036 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----C-------------CCCceEeecCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-------------IEGVIQVQGDI 102 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~-------------~~~v~~~~gDi 102 (249)
...+||++|+|.|+.+..+++.. +..+|++||+++.. . .++++.+.+|.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-------------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da 216 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-------------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA 216 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-------------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH
Confidence 35799999999999877776542 24699999999831 0 14677777776
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCCCH----HHHH
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGKDT----SLLY 177 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~~~----~~l~ 177 (249)
.+. +. . ..++||+|++|... ..+.. ...+. ...+..+.+.|+|||.|++..-.+... ..+.
T Consensus 217 ~~f-----L~-~-~~~~YDVIIvDl~D-P~~~~------~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~ 282 (374)
T PRK01581 217 KEF-----LS-S-PSSLYDVIIIDFPD-PATEL------LSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIG 282 (374)
T ss_pred HHH-----HH-h-cCCCccEEEEcCCC-ccccc------hhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHH
Confidence 542 21 1 23689999999632 11110 11222 456788899999999998854333222 2234
Q ss_pred HHHhcCCCeeEE
Q 025715 178 CQLKLFFPVVTF 189 (249)
Q Consensus 178 ~~l~~~f~~v~~ 189 (249)
..++..|..+..
T Consensus 283 ~tL~~af~~v~~ 294 (374)
T PRK01581 283 NTIEHAGLTVKS 294 (374)
T ss_pred HHHHHhCCceEE
Confidence 455666655554
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.2e-06 Score=68.80 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
.|.+||||+||+|+++..++.+.. .+|++||.++.. .+ .+++++++|+.+. +
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga--------------~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~--l 112 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA--------------KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA--L 112 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC--------------CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH--H
Confidence 578999999999999999998743 589999999742 12 2467788887442 1
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
..+.. ....+|+|+.|+++... .. ..++ ..+.. ..+|+++|.+|+....
T Consensus 113 ~~~~~--~~~~~dvv~~DPPy~~~----~~----~~~l-~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 113 KFLAK--KPTFDNVIYLDPPFFNG----AL----QALL-ELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred HHhhc--cCCCceEEEECcCCCCC----cH----HHHH-HHHHH-CCCCCCCeEEEEEecC
Confidence 11110 12348999999865321 11 1111 12222 4589999988886443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.5e-06 Score=70.74 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=64.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC---------------CCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---------------EGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~---------------~~v~ 96 (249)
.++.+|||+|||.|.-+.+++++ | ..|+|||+++.+ .+ ..++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~-G--------------~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ-G--------------HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC-C--------------CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 46679999999999999999874 3 699999999742 01 2467
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.++|+.+... . ....||+|+.-..+.. ... ..-...+....++|+|||++++
T Consensus 101 ~~~~D~~~l~~------~-~~~~fd~v~D~~~~~~-----l~~----~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 101 IYCGDFFALTA------A-DLADVDAVYDRAALIA-----LPE----EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEECcccCCCc------c-cCCCeeEEEehHhHhh-----CCH----HHHHHHHHHHHHHcCCCCeEEE
Confidence 77888887531 0 1247888886442211 111 1223567788899999997554
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.4e-06 Score=71.68 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=70.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.+..+||++|++.|.=+.++++.++ ++++|+.+|+++.. .+ .+++++.||..+ .
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~------------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~ 109 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALP------------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--V 109 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTST------------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--H
T ss_pred cCCceEEEeccccccHHHHHHHhhc------------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--h
Confidence 3557999999999999999998876 57899999999832 12 367888898764 3
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+..+...-..+.||+|+.|+.. .. +..-+..+.++|+|||.+++-
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~K--------~~------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDADK--------RN------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEESTG--------GG------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcccc--------cc------hhhHHHHHhhhccCCeEEEEc
Confidence 3334332223589999999742 11 123466778999999999974
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-06 Score=71.83 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=59.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++.+++.. + .+|+|+|+++.. .. .++.+..+|+.+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~--------------~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-G--------------AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--
Confidence 35789999999999999999864 2 589999999842 11 3677888887653
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
. ++||+|++...... .... ....++..+.+++++++.+.
T Consensus 117 --------~-~~fD~ii~~~~l~~-----~~~~----~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 117 --------C-GEFDIVVCMDVLIH-----YPAS----DMAKALGHLASLTKERVIFT 155 (219)
T ss_pred --------C-CCcCEEEEhhHHHh-----CCHH----HHHHHHHHHHHHhCCCEEEE
Confidence 2 68999998432211 1111 12345666667777654443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.7e-05 Score=68.06 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CC-CceEe-ecCCCChh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IE-GVIQV-QGDITNAR 106 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~-~v~~~-~gDi~~~~ 106 (249)
++.++||+|||+|+....++.+.. ..+++|+|+++.+. +. .+++. +.|..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-------------~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~-- 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-------------GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA-- 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--
Confidence 457999999999999988887653 47999999998431 11 23333 222221
Q ss_pred hHHHHHHhc--CCCcccEEEeCCCCCCCCCCC----cCHHH-----------------H---------HHHHHHHHHHHH
Q 025715 107 TAEVVIRHF--DGCKADLVVCDGAPDVTGLHD----MDEFV-----------------Q---------SQLILAGLTVVT 154 (249)
Q Consensus 107 ~~~~i~~~~--~~~~~DlVlsD~~~~~~g~~~----~~~~~-----------------~---------~~l~~~~l~~a~ 154 (249)
+...+ ..+.||+|+||+++....... ..... . ..++...+.++.
T Consensus 179 ----i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~ 254 (321)
T PRK11727 179 ----IFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK 254 (321)
T ss_pred ----hhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH
Confidence 11111 346899999998654332210 00000 0 112344566666
Q ss_pred HhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeEEecCCCCCCCCceEEEEEeeccCC
Q 025715 155 HVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTFAKPKSSRNSSIEAFAVCENYFPP 212 (249)
Q Consensus 155 ~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~~~kP~~sr~~s~E~y~v~~g~~~~ 212 (249)
..++..|++.+-+-...+...+...|++. ...+.+..=. .++..+.+||=.|...
T Consensus 255 ~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~---qG~~~~~~vaWsf~~~ 310 (321)
T PRK11727 255 AFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMA---QGQKQSRFIAWTFLDD 310 (321)
T ss_pred HHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEe---CCCeeeEEEEeecCCH
Confidence 77777888877555667788888877754 4344443211 2222334676666543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.7e-05 Score=64.99 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~ 120 (249)
++..|.|+|||-+..+..+.. .-.|...|+.... +. ++..|+.+.+ +.++++
T Consensus 72 ~~~viaD~GCGdA~la~~~~~----------------~~~V~SfDLva~n--~~--Vtacdia~vP--------L~~~sv 123 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN----------------KHKVHSFDLVAPN--PR--VTACDIANVP--------LEDESV 123 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-------------------EEEEESS-SS--TT--EEES-TTS-S----------TT-E
T ss_pred CCEEEEECCCchHHHHHhccc----------------CceEEEeeccCCC--CC--EEEecCccCc--------CCCCce
Confidence 457999999999997744431 2479999998754 33 4678998865 357899
Q ss_pred cEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec--CCCHHHHHHHHhcC-CCeeE
Q 025715 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR--GKDTSLLYCQLKLF-FPVVT 188 (249)
Q Consensus 121 DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~--~~~~~~l~~~l~~~-f~~v~ 188 (249)
|+++.-.+.-.+ + ....+.+|.|+||+||.|.|.... -.+...+...+..+ |+...
T Consensus 124 Dv~VfcLSLMGT-----n-------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 124 DVAVFCLSLMGT-----N-------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp EEEEEES---SS-------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred eEEEEEhhhhCC-----C-------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence 999876543221 2 125688999999999999987653 34566777777765 55443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=70.85 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=75.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~ 109 (249)
++||.+||-||++.|.-..+++..++ +++.|+||+.++... .+|+..+..|.+.+.-..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVG------------peG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVG------------PEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR 221 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccC------------CCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee
Confidence 58999999999999999999999887 789999999998541 357767778888765322
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+ -..+|+|++|.+.+. .. +.+...|...||+||.||+.+-
T Consensus 222 ml-----VgmVDvIFaDvaqpd-------q~------RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 222 ML-----VGMVDVIFADVAQPD-------QA------RIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred ee-----eeeEEEEeccCCCch-------hh------hhhhhhhhhhhccCCeEEEEEe
Confidence 21 147999999975321 11 2334467889999999998765
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=67.29 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.-+||+|||+|--++.+.+- .-..+|||+++-. .+++ ..+.+|+-.-- .
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---------------Gh~wiGvDiSpsML~~a~~~e~eg-dlil~DMG~Gl-------p 107 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---------------GHQWIGVDISPSMLEQAVERELEG-DLILCDMGEGL-------P 107 (270)
T ss_pred CcEEEEeccCCCcchheeccC---------------CceEEeecCCHHHHHHHHHhhhhc-CeeeeecCCCC-------C
Confidence 568999999999877776642 3578999999832 1222 24455554321 2
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH----HHhcCC-CeeEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC----QLKLFF-PVVTF 189 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~----~l~~~f-~~v~~ 189 (249)
|.+++||-|+|-.+.+|.-.-+..-....+-+...+...+.+|++|++.|+..+ +++..++-. .++.-| .-+.+
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY-pen~~q~d~i~~~a~~aGF~GGlvV 186 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY-PENEAQIDMIMQQAMKAGFGGGLVV 186 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec-ccchHHHHHHHHHHHhhccCCceee
Confidence 567899999998766543222111111122234566667889999999999655 344333322 223224 34555
Q ss_pred ecCCCCCCCC
Q 025715 190 AKPKSSRNSS 199 (249)
Q Consensus 190 ~kP~~sr~~s 199 (249)
-.|.+.|...
T Consensus 187 d~Pes~k~kK 196 (270)
T KOG1541|consen 187 DWPESTKNKK 196 (270)
T ss_pred ecccccccce
Confidence 6787766544
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.5e-05 Score=72.66 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=52.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.. .+.+++++++|+.+. .
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---------------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~--l 353 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---------------KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV--L 353 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---------------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH--H
Confidence 467899999999999999998753 589999999842 245788999998542 1
Q ss_pred HHHHHhcCCCcccEEEeCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~ 128 (249)
..+ .+...+||+|+.|++
T Consensus 354 ~~~--~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 354 PKQ--PWAGQIPDVLLLDPP 371 (431)
T ss_pred HHH--HhcCCCCCEEEECcC
Confidence 111 122357999999975
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.7e-05 Score=67.46 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..++++ ...|+|+|+++.+ .+.+++++++|+.+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---------------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~--- 234 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---------------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA--- 234 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---------------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---
Confidence 4689999999999999999874 2689999999842 2356889999986532
Q ss_pred HHHHhcCCCcccEEEeCCC
Q 025715 110 VVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~ 128 (249)
... .+.||+|++|++
T Consensus 235 ---~~~-~~~~D~Vv~dPP 249 (315)
T PRK03522 235 ---TAQ-GEVPDLVLVNPP 249 (315)
T ss_pred ---Hhc-CCCCeEEEECCC
Confidence 111 247999999964
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.08 E-value=9e-06 Score=67.07 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~ 108 (249)
.|.+||||+||+|+++..++.|.. .+|+.||.++.. ... .++.+.+|.... .
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA--------------~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~--l 105 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA--------------KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF--L 105 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---------------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH--H
T ss_pred CCCeEEEcCCccCccHHHHHhcCC--------------CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH--H
Confidence 678999999999999998888743 699999999743 112 356677775432 1
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHH--HHhccCCCEEEEEEecC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV--THVLKEGGKFIAKIFRG 170 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a--~~~Lk~gG~lv~k~~~~ 170 (249)
.+.. -...+||+|+.|++... ... .. ..+... ..+|+++|.+++.....
T Consensus 106 ~~~~--~~~~~fDiIflDPPY~~------~~~-~~----~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLA--KKGEKFDIIFLDPPYAK------GLY-YE----ELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHH--HCTS-EEEEEE--STTS------CHH-HH----HHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred Hhhc--ccCCCceEEEECCCccc------chH-HH----HHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1111 14578999999975432 111 11 122222 47999999999976544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-05 Score=64.00 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=71.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
+++..|||-.||+|++...++.......+ .. .. ....++|+|+++.. .+ ..+.+.++|+++.+
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~-~~--~~-~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~- 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPP-LN--DI-NELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP- 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTST-TT--H--CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCccc-cc--cc-ccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-
Confidence 67899999999999999887765431100 00 00 01248999999842 12 23677888988764
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+..+++|+|++|++. |.+.........++...+..+.++|++ +.++-+.........
T Consensus 102 -------~~~~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~~~ 158 (179)
T PF01170_consen 102 -------LPDGSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTSNRELEKA 158 (179)
T ss_dssp -------GTTSBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEESCCCHHHH
T ss_pred -------cccCCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHH
Confidence 245799999999854 333333344466788889999999999 344334444444433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.7e-06 Score=68.51 Aligned_cols=64 Identities=27% Similarity=0.275 Sum_probs=47.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.. ..|+++|+++.. .. .++.+..+|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---------------~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---------------AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence 467899999999999999888652 469999998732 11 357788888432
Q ss_pred HHHHHHhcCCCcccEEEeCCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
..++||+|++....
T Consensus 124 --------~~~~fD~v~~~~~l 137 (230)
T PRK07580 124 --------LLGRFDTVVCLDVL 137 (230)
T ss_pred --------ccCCcCEEEEcchh
Confidence 13689999986543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.6e-05 Score=66.59 Aligned_cols=125 Identities=21% Similarity=0.177 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C-------CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~-------~~~v~~~~gDi~~~ 105 (249)
...+||.+|+|.|+.+..+++..+ ..+|+.||+++.. + -++++.+.+|....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-------------~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~ 169 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-------------VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE 169 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-------------CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH
Confidence 357999999999999887776432 3689999999831 1 24677788887542
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHH-HHHHhccCCCEEEEEEecC------CCHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLT-VVTHVLKEGGKFIAKIFRG------KDTSLLY 177 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~-~a~~~Lk~gG~lv~k~~~~------~~~~~l~ 177 (249)
+. . ..++||+|+.|..-...+. .. ..|. ...++ .+.+.|+|||.+++..-.. .....+.
T Consensus 170 -----L~-~-~~~~yDvIi~D~~dp~~~~---~~---~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~ 236 (336)
T PLN02823 170 -----LE-K-RDEKFDVIIGDLADPVEGG---PC---YQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIY 236 (336)
T ss_pred -----Hh-h-CCCCccEEEecCCCccccC---cc---hhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHH
Confidence 22 1 2468999999964211110 00 1122 23455 6789999999998754321 1134566
Q ss_pred HHHhcCCCeeEEec
Q 025715 178 CQLKLFFPVVTFAK 191 (249)
Q Consensus 178 ~~l~~~f~~v~~~k 191 (249)
..++..|..|..+.
T Consensus 237 ~tl~~vF~~v~~y~ 250 (336)
T PLN02823 237 NTLRQVFKYVVPYT 250 (336)
T ss_pred HHHHHhCCCEEEEE
Confidence 67778898887754
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.1e-05 Score=61.08 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=78.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC------CCCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~------~~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
..|..||++|.|+|.++.+++.+.- ....+++++.++. +..+++++++||..+.++. + .
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv------------~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~--l-~ 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGV------------RPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT--L-G 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCC------------CccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH--H-h
Confidence 4678999999999999999988764 4568899999983 3467889999999887632 1 2
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
...+..||.|+|-... .+..-... .++++.+...|..||.++.-.+.+
T Consensus 112 e~~gq~~D~viS~lPl-----l~~P~~~~----iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 112 EHKGQFFDSVISGLPL-----LNFPMHRR----IAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred hcCCCeeeeEEecccc-----ccCcHHHH----HHHHHHHHHhcCCCCeEEEEEecC
Confidence 3456789999996532 22332222 356777888999999999766653
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=63.77 Aligned_cols=102 Identities=22% Similarity=0.163 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~~gDi~~~~~~ 108 (249)
.|.++|||.||+|+...-++.|.. ..++.||.+.... ..+++.+.+|.. ..+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA--------------~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L 106 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA--------------ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RAL 106 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC--------------ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHH
Confidence 578999999999999999988853 7999999987421 134666777765 221
Q ss_pred HHHHHhcCC-CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 109 EVVIRHFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 109 ~~i~~~~~~-~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+ .... +.||+|+.|+++. .|..+.. + ...+..-..+|+|+|.+++..-..
T Consensus 107 ~----~~~~~~~FDlVflDPPy~-~~l~~~~------~-~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 K----QLGTREPFDLVFLDPPYA-KGLLDKE------L-ALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred H----hcCCCCcccEEEeCCCCc-cchhhHH------H-HHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1 2232 2499999998765 2221111 0 011112457899999999965433
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-05 Score=68.58 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=52.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|..+..++++ + .+|+++|+++.. ..++++++++|+.+.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~-~--------------~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR-A--------------KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD---- 88 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh-C--------------CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC----
Confidence 57789999999999999999886 3 589999999731 1357889999997643
Q ss_pred HHHhcCCCcccEEEeCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~ 130 (249)
+ ..+|.|++|.+..
T Consensus 89 ----~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 ----L--PEFNKVVSNLPYQ 102 (258)
T ss_pred ----c--hhceEEEEcCCcc
Confidence 1 3479999998654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.4e-05 Score=65.73 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=72.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i 111 (249)
..+|++|||.|.|...+|++.+ +..++|||+.... .++|+..+++|... +
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-------------~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~------~ 110 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-------------EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE------V 110 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-------------CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH------H
Confidence 5899999999999999999874 6799999998731 34588888888765 2
Q ss_pred HHhc-CCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 112 IRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 112 ~~~~-~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+.+ +++++|-|..+-+-.|.-.+... -++ +...+....+.|+|||.|.+++
T Consensus 111 l~~~~~~~sl~~I~i~FPDPWpKkRH~K----RRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPDPWPKKRHHK----RRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHhcCCCCCeeEEEEECCCCCCCccccc----cccCCHHHHHHHHHHccCCCEEEEEe
Confidence 3344 44599999877643332221111 122 2456778889999999999875
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.7e-05 Score=71.24 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||||||+|.++..++.+ ...|+|||+++.+ .+.+++++++|+.+..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---------------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~--- 294 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---------------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA--- 294 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---------------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---
Confidence 4679999999999999988854 2589999999843 2356888999985431
Q ss_pred HHHHhcCCCcccEEEeCCC
Q 025715 110 VVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~ 128 (249)
... ..+||+|+.|++
T Consensus 295 ---~~~-~~~~D~vi~DPP 309 (374)
T TIGR02085 295 ---TAQ-MSAPELVLVNPP 309 (374)
T ss_pred ---Hhc-CCCCCEEEECCC
Confidence 111 246999999975
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-05 Score=67.76 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=74.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~i~ 112 (249)
.++|.+|||-|.-+.-+.+..+ ++.-.|+++|-+|-+. ..++.....|++.+. +.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~-----------n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~----~~ 137 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSP-----------NNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPS----LK 137 (264)
T ss_pred hhheeeccCCCcccchhhhcCC-----------CCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchh----cc
Confidence 3899999999998887776543 1347999999998531 123444556777654 23
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
..+..+++|.|++--..+..+- +. ...++....++|||||.+++.-+...+..++
T Consensus 138 ~~~~~~svD~it~IFvLSAi~p---ek------~~~a~~nl~~llKPGG~llfrDYg~~Dlaql 192 (264)
T KOG2361|consen 138 EPPEEGSVDIITLIFVLSAIHP---EK------MQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL 192 (264)
T ss_pred CCCCcCccceEEEEEEEeccCh---HH------HHHHHHHHHHHhCCCcEEEEeecccchHHHH
Confidence 3456689999887643332111 11 1257788899999999999987765555444
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.4e-05 Score=67.82 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=54.7
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceE-------eecCCCChhhHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQ-------VQGDITNARTAEVV 111 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~-------~~gDi~~~~~~~~i 111 (249)
..+|+|||+|--+..+++.. -+|+|+|+++.. ..++++. ...+..++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---------------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~----- 95 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---------------KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL----- 95 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---------------hhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-----
Confidence 89999999996555666664 489999999732 1222211 112222211
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC-EEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG-KFIA 165 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG-~lv~ 165 (249)
. .++++|+|++--+..+. + +..+...+.++||+.| .+.+
T Consensus 96 -g--~e~SVDlI~~Aqa~HWF-----d-------le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 96 -G--GEESVDLITAAQAVHWF-----D-------LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -C--CCcceeeehhhhhHHhh-----c-------hHHHHHHHHHHcCCCCCEEEE
Confidence 0 25799999986544432 2 1357888999999887 4443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.2e-05 Score=67.73 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-------CCCceEeecCCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-------IEGVIQVQGDITN 104 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-------~~~v~~~~gDi~~ 104 (249)
++.+|||+|||+|.++..++++ + ..|+|+|+++.. . ..++.+..+|+.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g--------------~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-G--------------AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 5689999999999999999864 3 689999999832 0 1234566666532
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCC
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
+ .++||+|+|...
T Consensus 209 ----------l-~~~fD~Vv~~~v 221 (315)
T PLN02585 209 ----------L-SGKYDTVTCLDV 221 (315)
T ss_pred ----------c-CCCcCEEEEcCE
Confidence 2 368999998643
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=2e-05 Score=67.69 Aligned_cols=84 Identities=30% Similarity=0.383 Sum_probs=62.6
Q ss_pred chhhhhhHHhhhhhcC-------cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---
Q 025715 22 RARSAFKLLQIDEEFN-------IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--- 91 (249)
Q Consensus 22 ~~ra~~KL~ei~~~~~-------~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--- 91 (249)
.|||.+||.|....|= -+.+|+..+|||++||||+-.+.++ +-.|++||--+|+.
T Consensus 185 PSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr---------------~m~V~aVDng~ma~sL~ 249 (358)
T COG2933 185 PSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR---------------NMRVYAVDNGPMAQSLM 249 (358)
T ss_pred CchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc---------------ceEEEEeccchhhhhhh
Confidence 6899999998654442 2478999999999999999888765 26999999999874
Q ss_pred -CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 92 -IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 92 -~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
-..|+-...|=..... ....+|..+|||.
T Consensus 250 dtg~v~h~r~DGfk~~P--------~r~~idWmVCDmV 279 (358)
T COG2933 250 DTGQVTHLREDGFKFRP--------TRSNIDWMVCDMV 279 (358)
T ss_pred cccceeeeeccCccccc--------CCCCCceEEeehh
Confidence 1245555556554321 2467999999984
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.3e-05 Score=61.61 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=72.7
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
+++|.+||=||+++|.-..+++.-.+ +|.|+||+.++-. ..+|+-.+-+|...++...
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-------------~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-------------EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR 140 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-------------CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh
Confidence 48899999999999999999998875 5899999999832 2367777889999987544
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+. +.+|+|..|.+- + ++ + +-+...|...||+||.+++
T Consensus 141 ~~V-----e~VDviy~DVAQ-----p--~Q---a---~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 141 HLV-----EKVDVIYQDVAQ-----P--NQ---A---EILADNAEFFLKKGGYVVI 178 (231)
T ss_pred hhc-----ccccEEEEecCC-----c--hH---H---HHHHHHHHHhcccCCeEEE
Confidence 332 469999999641 1 11 1 2345677889999996554
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.90 E-value=3e-05 Score=64.78 Aligned_cols=89 Identities=26% Similarity=0.297 Sum_probs=57.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~ 106 (249)
+++|.+|+|+.||-|.|+..+++..+ ...|+|+|++|.+ .+. .+..+++|..+..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-------------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-------------AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--------------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-------------ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence 57899999999999999999987532 4689999999853 123 4677899987632
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
....+|.|+.+.+... ...+..+..++++||.+.
T Consensus 166 ---------~~~~~drvim~lp~~~---------------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 166 ---------PEGKFDRVIMNLPESS---------------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------TT-EEEEEE--TSSG---------------GGGHHHHHHHEEEEEEEE
T ss_pred ---------CccccCEEEECChHHH---------------HHHHHHHHHHhcCCcEEE
Confidence 2478999999864322 124667889999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=68.28 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=51.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC--CCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~--~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..++++. .+|+|+|+++.. .. ++++++++|+.+.+.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~---- 101 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA---------------AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDL---- 101 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCH----
Confidence 577899999999999999998873 489999999842 11 578899999987542
Q ss_pred HHhcCCCcccEEEeCCCC
Q 025715 112 IRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~ 129 (249)
.+...|.|++|.+.
T Consensus 102 ----~~~~~~~vv~NlPY 115 (272)
T PRK00274 102 ----SELQPLKVVANLPY 115 (272)
T ss_pred ----HHcCcceEEEeCCc
Confidence 11115899999754
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=72.89 Aligned_cols=97 Identities=24% Similarity=0.263 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------C-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~-~~v~~~~gDi~~~~~~ 108 (249)
++..|+|+|||+|-.+..+++..... +...+|+||+-++.+. . ..|+++++|+.+.+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~---------~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARA---------GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHH---------CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHh---------CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-
Confidence 35789999999999998765532100 0246999999998531 2 468999999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
+.++|+|+|-.- |....++ . .-..|..+.+.|||||.++
T Consensus 256 --------pekvDIIVSElL----Gsfg~nE-l----~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 --------PEKVDIIVSELL----GSFGDNE-L----SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --------SS-EEEEEE-------BTTBTTT-S----HHHHHHHGGGGEEEEEEEE
T ss_pred --------CCceeEEEEecc----CCccccc-c----CHHHHHHHHhhcCCCCEEe
Confidence 358999999742 2111111 1 1124667788999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3e-05 Score=69.12 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=66.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCC-ceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEG-VIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~-v~~~~gDi~~~~~~ 108 (249)
=++..|||+|||+|..|...++.. ..+|+|||-+.+.. +.+ +++++|.+.+.+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG--------------A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~-- 122 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG--------------ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE-- 122 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC--------------cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe--
Confidence 367899999999999999998764 37999999998642 233 677888887753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
++.+++|+|+|. |-|.+-. ...++...|-.=-+.|+|||.+.
T Consensus 123 ------LP~eKVDiIvSE----WMGy~Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 123 ------LPVEKVDIIVSE----WMGYFLL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ------cCccceeEEeeh----hhhHHHH----HhhhhhhhhhhhhhccCCCceEc
Confidence 345799999994 3332111 11233334444447999999875
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=61.91 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=69.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEee-cCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQ-GDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~-gDi~~~~ 106 (249)
.+..+||++|++.|.=+..++..++ .+++++.+|+++.. .+ +.+..+. ||..+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~------------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~-- 123 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALP------------DDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD-- 123 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCC------------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH--
Confidence 4678999999999999999998886 46899999999842 12 2355555 45433
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+ ...++||+|+.|..... +...+..+.++|+|||.+|+-
T Consensus 124 ---~l~~-~~~~~fDliFIDadK~~--------------yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 124 ---VLSR-LLDGSFDLVFIDADKAD--------------YPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ---HHHh-ccCCCccEEEEeCChhh--------------CHHHHHHHHHHhCCCcEEEEe
Confidence 2332 34589999999974321 124678889999999999964
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.9e-05 Score=64.08 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=49.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++. ..|+++|+++.. ..++++++++|+.+.+.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~--- 89 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---------------KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL--- 89 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh---
Confidence 467899999999999999999875 369999998732 13578889999987542
Q ss_pred HHHhcCCCccc---EEEeCCCC
Q 025715 111 VIRHFDGCKAD---LVVCDGAP 129 (249)
Q Consensus 111 i~~~~~~~~~D---lVlsD~~~ 129 (249)
.++| +|++|.+.
T Consensus 90 -------~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 -------PDFPKQLKVVSNLPY 104 (253)
T ss_pred -------hHcCCcceEEEcCCh
Confidence 1344 99998753
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.7e-05 Score=69.76 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=63.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||++||+|.++..++...+ ...|+++|+++.+ .+.++++.++|+...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-------------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~----- 119 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-------------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL----- 119 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-----
Confidence 46999999999999999987653 2589999999843 133455677776432
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+. . ..+||+|+.|+. |. .. ..+..|.+.+++||.+.++
T Consensus 120 l~-~--~~~fD~V~lDP~----Gs---~~--------~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 120 LH-E--ERKFDVVDIDPF----GS---PA--------PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred Hh-h--cCCCCEEEECCC----CC---cH--------HHHHHHHHHhcCCCEEEEE
Confidence 11 1 357999999973 22 11 2456667889999999886
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=62.78 Aligned_cols=96 Identities=24% Similarity=0.298 Sum_probs=68.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.+..+|||+|+|.|.++..++++.+ +.+++.+|+-... ..++++++.||+.++ +
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~---------~ 156 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYP-------------NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP---------L 156 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHST-------------TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---------C
T ss_pred cCccEEEeccCcchHHHHHHHHHCC-------------CCcceeeccHhhhhccccccccccccccHHhh---------h
Confidence 5567999999999999999998875 6789999985432 246899999999853 3
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC--CEEEEEEe
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG--GKFIAKIF 168 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g--G~lv~k~~ 168 (249)
+ . +|+|+.--.. +++... .+..+|+.+.+.|+|| |++++...
T Consensus 157 P-~-~D~~~l~~vL-----h~~~d~----~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 157 P-V-ADVYLLRHVL-----HDWSDE----DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp S-S-ESEEEEESSG-----GGS-HH----HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred c-c-ccceeeehhh-----hhcchH----HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 4 3 9999874322 222222 2456788999999999 99987644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=6e-06 Score=69.59 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=61.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCc--eEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGV--IQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v--~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.++||||||||-....+..+. .+++|||||.... . +++ +..++|... .+ +...
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a---------------~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~-----Fl-~~~~ 185 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMA---------------DRLTGVDISENMLAKAHEKGLYDTLYVAEAVL-----FL-EDLT 185 (287)
T ss_pred ceeeecccCcCcccHhHHHHH---------------hhccCCchhHHHHHHHHhccchHHHHHHHHHH-----Hh-hhcc
Confidence 689999999999999998775 4889999998431 0 111 011222211 11 1124
Q ss_pred CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.++||+|++-=...+-|. +..++..+..+|+|||.|.+++-+
T Consensus 186 ~er~DLi~AaDVl~YlG~-----------Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 186 QERFDLIVAADVLPYLGA-----------LEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred CCcccchhhhhHHHhhcc-----------hhhHHHHHHHhcCCCceEEEEecc
Confidence 578999987432222221 245677889999999999987654
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00036 Score=61.35 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=85.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------------C-CCCceEeecCCCChhh
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------P-IEGVIQVQGDITNART 107 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------------~-~~~v~~~~gDi~~~~~ 107 (249)
.+||=+|-|.|+++..+++... ..+++.|||++.- . .++++.+.+|..+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-------------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-- 142 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-------------VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-- 142 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-------------cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH--
Confidence 5999999999999999988753 4689999999731 1 25666677776442
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCC-CCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC----CCHHHHHHHHhc
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG----KDTSLLYCQLKL 182 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~-~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~----~~~~~l~~~l~~ 182 (249)
+. ... .+||+|+.|..... |. .+.- ....++.+.+.|+++|.++...-.+ +........++.
T Consensus 143 ---v~-~~~-~~fDvIi~D~tdp~-gp~~~Lf-------t~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~ 209 (282)
T COG0421 143 ---LR-DCE-EKFDVIIVDSTDPV-GPAEALF-------TEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSR 209 (282)
T ss_pred ---HH-hCC-CcCCEEEEcCCCCC-CcccccC-------CHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHh
Confidence 22 223 48999999975432 22 1111 1346788899999999999872221 123345555566
Q ss_pred CCCeeEEe-cCCCCCCCCceEEEEEe
Q 025715 183 FFPVVTFA-KPKSSRNSSIEAFAVCE 207 (249)
Q Consensus 183 ~f~~v~~~-kP~~sr~~s~E~y~v~~ 207 (249)
.|..+..+ .+...-++....+.++-
T Consensus 210 vf~~~~~~~~~ipt~~~g~~~f~~~s 235 (282)
T COG0421 210 VFSIVPPYVAPIPTYPSGFWGFIVAS 235 (282)
T ss_pred hccccccceeccceecCCceEEEEee
Confidence 67665543 12222233334566655
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=63.02 Aligned_cols=121 Identities=24% Similarity=0.302 Sum_probs=75.6
Q ss_pred hhHHHHHHhccchhhh---------hhHHhhhhhcCcc--cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC
Q 025715 11 IYYRKAKEEGWRARSA---------FKLLQIDEEFNIF--EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79 (249)
Q Consensus 11 ~~~~~a~~~~~~~ra~---------~KL~ei~~~~~~~--~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~ 79 (249)
.|+.+....|+..|+. .+|..+.. +..- ....++||||||-|..+..++....
T Consensus 54 ~f~S~T~iNG~LgRG~MFvfS~~Q~~~LL~~~~-~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~--------------- 117 (265)
T PF05219_consen 54 WFMSKTDINGILGRGSMFVFSEEQFRKLLRISG-FSWNPDWKDKSLLDLGAGDGEVTERLAPLFK--------------- 117 (265)
T ss_pred HHHhHHhHhhhhcCCcEEEecHHHHHHHhhhhc-cCCCCcccCCceEEecCCCcHHHHHHHhhcc---------------
Confidence 3566666777666653 33444321 1111 1356899999999999999988763
Q ss_pred eEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Q 025715 80 LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH 155 (249)
Q Consensus 80 ~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~ 155 (249)
+|+|-+.++... -.|.+.+ |+.+.. . .+.+||+|.|--..+.. .++ ...|..+.+
T Consensus 118 ~v~aTE~S~~Mr~rL~~kg~~vl--~~~~w~-------~-~~~~fDvIscLNvLDRc----~~P-------~~LL~~i~~ 176 (265)
T PF05219_consen 118 EVYATEASPPMRWRLSKKGFTVL--DIDDWQ-------Q-TDFKFDVISCLNVLDRC----DRP-------LTLLRDIRR 176 (265)
T ss_pred eEEeecCCHHHHHHHHhCCCeEE--ehhhhh-------c-cCCceEEEeehhhhhcc----CCH-------HHHHHHHHH
Confidence 799999997431 2454444 332221 0 24689999884322211 121 246788899
Q ss_pred hccCCCEEEEEEe
Q 025715 156 VLKEGGKFIAKIF 168 (249)
Q Consensus 156 ~Lk~gG~lv~k~~ 168 (249)
.|+|+|.+++.+-
T Consensus 177 ~l~p~G~lilAvV 189 (265)
T PF05219_consen 177 ALKPNGRLILAVV 189 (265)
T ss_pred HhCCCCEEEEEEE
Confidence 9999999998753
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.8e-05 Score=67.51 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~~ 109 (249)
.+..|||+|||+|..+..+++.. ..+|+||+-+.|+. -+++..+.|-+.+.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--------------A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--- 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--------------AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE--- 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--------------cceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc---
Confidence 46799999999999999988763 37999999999863 135677788777643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+ ++++|+|+|.+. |.--.+ + +++ .....|.+.|+|.|.+.=
T Consensus 240 -----L-PEk~DviISEPM----G~mL~N-E---RML-EsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 240 -----L-PEKVDVIISEPM----GYMLVN-E---RML-ESYLHARKWLKPNGKMFP 280 (517)
T ss_pred -----C-chhccEEEeccc----hhhhhh-H---HHH-HHHHHHHhhcCCCCcccC
Confidence 3 368999999752 111111 1 222 234567799999998763
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00022 Score=60.23 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~~gDi~~~~~~ 108 (249)
...++||||.=+|.=+..++..++ ++|+|+++|+++... ...+++++|+..+ .+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp------------~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e--sL 138 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP------------EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE--SL 138 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC------------CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh--hH
Confidence 458999999999998888888887 689999999997421 1346778887644 44
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.++......++||+++.|.- .+.+ ..-.+.+.++||+||.+++
T Consensus 139 d~l~~~~~~~tfDfaFvDad--------K~nY------~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVDAD--------KDNY------SNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred HHHHhcCCCCceeEEEEccc--------hHHH------HHHHHHHHhhcccccEEEE
Confidence 45554445689999999851 2221 1346678899999999986
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.8e-05 Score=70.22 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=64.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC-----CceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE-----GVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~-----~v~~~~gDi~~~~ 106 (249)
.++.+|+|-|||+|+|...+.+++.... .......++|+|+++... +. ......+|....+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~------~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKR------NKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCH------HHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH
T ss_pred cccceeechhhhHHHHHHHHHHhhcccc------cccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 5678999999999999998887541000 000246899999987421 11 2245677765543
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcC----H-H-----HHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD----E-F-----VQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~----~-~-----~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
. ......||+|++|+++...+..... . + .....-...+..+.+.|++||++++-+.
T Consensus 119 ~------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 119 K------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp S------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred c------cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 1 0124689999999876543110000 0 0 0000112367788999999999887554
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=63.06 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~~~ 108 (249)
+..+||++|++.|.=+.+++..++ ++++|+++|.++.. . ..+++++.||..+ .+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~------------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~L 144 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP------------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VL 144 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--HH
Confidence 457999999999999998888775 56899999999732 1 2468888898644 33
Q ss_pred HHHHHhc-CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~-~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
..+...- ..++||+|+.|+.. .. +..-+..+.++|+|||.+++
T Consensus 145 ~~l~~~~~~~~~fD~iFiDadK--------~~------Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDADK--------DN------YINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHhccccCCcccEEEecCCH--------HH------hHHHHHHHHHhcCCCeEEEE
Confidence 3332110 12589999999731 11 12345677899999999886
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.4e-05 Score=70.96 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=74.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
..+..+||+|||.|.|+..++...+ +..++|+|+.... .+.|+.++.+|+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p-------------~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~----- 407 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP-------------DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD----- 407 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH-----
Confidence 4567999999999999999998864 6899999998731 3567777776642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+...+++.++|.|..+-+-+|.-.+.. -.++ ....+....++|+|||.+.+++
T Consensus 408 -~~~~~~~~~sv~~i~i~FPDPWpKkrh~----krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 408 -LILNDLPNNSLDGIYILFPDPWIKNKQK----KKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -HHHHhcCcccccEEEEECCCCCCCCCCc----cccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 2345577789999988764333211111 1122 2456778889999999999865
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.7e-05 Score=66.85 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=52.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.. . .++++++++|+...+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---------------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~- 98 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---------------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE- 98 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-
Confidence 578899999999999999998753 589999999731 1 346889999987632
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
...+|+|++|++.+.
T Consensus 99 ---------~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 99 ---------FPYFDVCVANVPYQI 113 (294)
T ss_pred ---------ccccCEEEecCCccc
Confidence 236899999986544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=55.67 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCCh-HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhc
Q 025715 41 GVKRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 41 ~g~~vLDLG~gpG~-~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
++.++||+|||+|. ++..+++ .+ ..|+|+|+++.+. -.+++++.+|+++++.. +
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~-~G--------------~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~------~ 74 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE-SG--------------FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE------I 74 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH-CC--------------CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH------H
Confidence 45799999999996 7777774 33 6999999999642 13578899999987631 1
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
- +.+|+|.|--+| .+|+..+++.|.+ -|..++++.+.++.
T Consensus 75 y-~~a~liysirpp-------------~el~~~~~~la~~---~~~~~~i~~l~~e~ 114 (134)
T PRK04148 75 Y-KNAKLIYSIRPP-------------RDLQPFILELAKK---INVPLIIKPLSGEE 114 (134)
T ss_pred H-hcCCEEEEeCCC-------------HHHHHHHHHHHHH---cCCCEEEEcCCCCC
Confidence 1 579999984322 1344556666654 36778888776654
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00038 Score=59.88 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~ 120 (249)
....|.|+|||-+-.++ . ..-.|..+|+-+.. -.++.+|+.+.+ +.++++
T Consensus 180 ~~~vIaD~GCGEakiA~----~--------------~~~kV~SfDL~a~~----~~V~~cDm~~vP--------l~d~sv 229 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----S--------------ERHKVHSFDLVAVN----ERVIACDMRNVP--------LEDESV 229 (325)
T ss_pred CceEEEecccchhhhhh----c--------------cccceeeeeeecCC----CceeeccccCCc--------CccCcc
Confidence 45689999999988654 1 12578899987643 235678998865 467899
Q ss_pred cEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC--CCHHHHHHHHhcC-CC
Q 025715 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQLKLF-FP 185 (249)
Q Consensus 121 DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~--~~~~~l~~~l~~~-f~ 185 (249)
|+++.-.+.-.+ + +...+.+|.|+|++||.+.|....+ .+...+...+..+ |.
T Consensus 230 DvaV~CLSLMgt-----n-------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 230 DVAVFCLSLMGT-----N-------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFD 285 (325)
T ss_pred cEEEeeHhhhcc-----c-------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCe
Confidence 999865433221 1 2357889999999999999866533 3344455545443 54
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00023 Score=63.97 Aligned_cols=95 Identities=26% Similarity=0.340 Sum_probs=70.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC-ceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~-v~~~~gDi~~~~~ 107 (249)
..|.+|||+-||-|.||..+++... ..|+|+|++|.+ .+.+ +..++||......
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~--------------~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR--------------PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC--------------ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh
Confidence 4699999999999999999987643 449999999953 1334 7788999876421
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
..+.+|.|+.+..... ...+..|.+++++||.+.+-.+.++
T Consensus 253 --------~~~~aDrIim~~p~~a---------------~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 253 --------ELGVADRIIMGLPKSA---------------HEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred --------ccccCCEEEeCCCCcc---------------hhhHHHHHHHhhcCcEEEEEeccch
Confidence 1167999998764321 1356778899999999988766443
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.9e-05 Score=63.79 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=68.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------------------C--CCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------------------I--EGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------------------~--~~v~ 96 (249)
.++.+||+.|||.|--..+++.. | ..|+|+|+++.+. . .+++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~-G--------------~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK-G--------------VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC-C--------------CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 45689999999999999999875 3 5899999997420 0 2568
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.++|+.+..... + ..++||+|.--+++.. ... ++-.+-.....++|+|||.+++.++.
T Consensus 107 ~~~gD~f~l~~~~---~--~~~~fD~VyDra~~~A-----lpp----~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 107 IYVADIFNLPKIA---N--NLPVFDIWYDRGAYIA-----LPN----DLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred EEEccCcCCCccc---c--ccCCcCeeeeehhHhc-----CCH----HHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 8899998864200 0 1257999875543321 111 11123455677899999999987773
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=62.56 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
+..+||+||..|..|..+++..+ ...|+|+||.+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-------------~r~iLGvDID~ 92 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-------------PRRILGVDIDP 92 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-------------cceeeEeeccH
Confidence 57999999999999999999886 35799999987
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00022 Score=56.16 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=63.3
Q ss_pred ccchh---hhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----
Q 025715 20 GWRAR---SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----- 91 (249)
Q Consensus 20 ~~~~r---a~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----- 91 (249)
.|.+| |+.-|.-|.+.|+-+ .|++++|||||.|-.+...+ +. ....|+|+||.|.+.
T Consensus 25 QY~T~p~iAasM~~~Ih~Tygdi-Egkkl~DLgcgcGmLs~a~s--m~------------~~e~vlGfDIdpeALEIf~r 89 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDI-EGKKLKDLGCGCGMLSIAFS--MP------------KNESVLGFDIDPEALEIFTR 89 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccc-cCcchhhhcCchhhhHHHhh--cC------------CCceEEeeecCHHHHHHHhh
Confidence 35555 355666777777744 46899999999999884433 23 246899999998541
Q ss_pred ----C-CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 92 ----I-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 92 ----~-~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
. -++.++++|+.++. +..+.||.++-|+.+..
T Consensus 90 NaeEfEvqidlLqcdildle--------~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 90 NAEEFEVQIDLLQCDILDLE--------LKGGIFDTAVINPPFGT 126 (185)
T ss_pred chHHhhhhhheeeeeccchh--------ccCCeEeeEEecCCCCc
Confidence 1 14567899998865 34588999999987654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0009 Score=54.58 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=62.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------------CCCceEeecCCCCh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------IEGVIQVQGDITNA 105 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------------~~~v~~~~gDi~~~ 105 (249)
..++.+||+||||+|--+.+++...+ ...|+.-|..+... ...+++...|..+.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-------------~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~ 109 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-------------AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDE 109 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--------------SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC-------------CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCc
Confidence 35778999999999988888887633 47899999887211 12355555566542
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe-cCCCHHHHHHHHhc
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RGKDTSLLYCQLKL 182 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~-~~~~~~~l~~~l~~ 182 (249)
.. .+.+...+||+|++- ++. ++. ++....+....++|+++|.+++..- +......++..+++
T Consensus 110 ~~----~~~~~~~~~D~Ilas---Dv~--Y~~------~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 110 LD----SDLLEPHSFDVILAS---DVL--YDE------ELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp HH----HHHHS-SSBSEEEEE---S----S-G------GGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred cc----ccccccccCCEEEEe---ccc--chH------HHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 21 122345689999762 221 111 1234566677889999999666433 33345566665543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00012 Score=60.16 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=64.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
...+.|||+|+|..+..+++.. -+|+|++.+|.. ...+++.+.||..+.+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---------------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---- 93 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---------------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---- 93 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---------------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc----
Confidence 3699999999999999998863 599999999853 1246788899988754
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
| +..|+|+|-|- |.....+-+-..+..+.+.||..++++
T Consensus 94 ----f--e~ADvvicEml---------DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 94 ----F--ENADVVICEML---------DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ----c--cccceeHHHHh---------hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 2 46899998762 222111122345677778999999876
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=59.70 Aligned_cols=119 Identities=18% Similarity=0.078 Sum_probs=73.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C---------------CCCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~---------------~~~v~ 96 (249)
.++.+||..|||.|.-..+++++ | ..|+|+|+++.+ . ..+++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~-G--------------~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ-G--------------HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT-T--------------EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred CCCCeEEEeCCCChHHHHHHHHC-C--------------CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 56789999999999999999875 3 699999999732 0 12467
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEE--EEEEec-----
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKF--IAKIFR----- 169 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~l--v~k~~~----- 169 (249)
+++||+.+.... ..++||+|.=-+++-.-.. ... .+=.....++|+|||.+ ++-.+.
T Consensus 101 ~~~gDfF~l~~~-------~~g~fD~iyDr~~l~Alpp--~~R-------~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~ 164 (218)
T PF05724_consen 101 IYCGDFFELPPE-------DVGKFDLIYDRTFLCALPP--EMR-------ERYAQQLASLLKPGGRGLLITLEYPQGEME 164 (218)
T ss_dssp EEES-TTTGGGS-------CHHSEEEEEECSSTTTS-G--GGH-------HHHHHHHHHCEEEEEEEEEEEEES-CSCSS
T ss_pred EEEcccccCChh-------hcCCceEEEEecccccCCH--HHH-------HHHHHHHHHHhCCCCcEEEEEEEcCCcCCC
Confidence 889999986521 1247999986554322110 011 12345567899999993 332222
Q ss_pred CC----CHHHHHHHHhcCCCeeEE
Q 025715 170 GK----DTSLLYCQLKLFFPVVTF 189 (249)
Q Consensus 170 ~~----~~~~l~~~l~~~f~~v~~ 189 (249)
++ ...++..++...|+-..+
T Consensus 165 GPPf~v~~~ev~~l~~~~f~i~~l 188 (218)
T PF05724_consen 165 GPPFSVTEEEVRELFGPGFEIEEL 188 (218)
T ss_dssp SSS----HHHHHHHHTTTEEEEEE
T ss_pred CcCCCCCHHHHHHHhcCCcEEEEE
Confidence 11 245666777766654443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00047 Score=59.62 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=67.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
+||.+|++-|+|+|++|.++++.++ +.|+++.+|.-..+ .+ .+|++..-|+...-.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~------------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVA------------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhC------------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 7999999999999999999999987 67999999996532 12 468888888876432
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
. .....+|.|..|+.-.+ .++-.+..+||.+|.-+|
T Consensus 172 ~------~ks~~aDaVFLDlPaPw----------------~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 172 L------IKSLKADAVFLDLPAPW----------------EAIPHAAKILKDEGGRLC 207 (314)
T ss_pred c------ccccccceEEEcCCChh----------------hhhhhhHHHhhhcCceEE
Confidence 1 12467999999984322 133445668888875444
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=59.50 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=49.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.+||||+||+|.++..+++.. .+|+|||+++.+ .+.+++++.+|+.+. ++.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~--l~~~ 270 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---------------RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF--TQAM 270 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---------------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH--HHHH
Confidence 579999999999999888653 489999999842 245788999998553 1222
Q ss_pred HHhc----------CCCcccEEEeCCC
Q 025715 112 IRHF----------DGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~----------~~~~~DlVlsD~~ 128 (249)
...- ...+||+|+.|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCC
Confidence 1100 0225899999985
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=55.12 Aligned_cols=87 Identities=23% Similarity=0.242 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+++|+|+|+|-=+.-++=.. ++.+|+-+|-..-+ .++|++++++.+.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-------------p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~---- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-------------PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG---- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-------------cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc----
Confidence 5899999999998777776333 35679999987643 3578888888776532
Q ss_pred HHHhcCCCc-ccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 111 VIRHFDGCK-ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~~~~-~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.... ||+|+|-+.-+ ....++.+..++|+||.++.
T Consensus 131 -----~~~~~~D~vtsRAva~---------------L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 131 -----QEKKQYDVVTSRAVAS---------------LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -----cccccCcEEEeehccc---------------hHHHHHHHHHhcccCCcchh
Confidence 1123 99999975311 12357788999999998763
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0029 Score=56.24 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=57.9
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC-CCceEeec
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQG 100 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~-~~v~~~~g 100 (249)
|+.+.+. .++|..++|.=+|-||-|..+++.++ .++|+|+|.++.+ .. .+++++++
T Consensus 11 Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~-------------~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~ 76 (305)
T TIGR00006 11 EVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLG-------------TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHD 76 (305)
T ss_pred HHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeC
Confidence 4444443 25778999999999999999998875 3899999999843 11 36888888
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCC
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~ 127 (249)
+..+.. .+....+..++|.|+.|.
T Consensus 77 nF~~l~---~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 77 NFANFF---EHLDELLVTKIDGILVDL 100 (305)
T ss_pred CHHHHH---HHHHhcCCCcccEEEEec
Confidence 877643 222233446799999995
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.001 Score=57.43 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~~ 105 (249)
...+||=||-|-|+.+..+.+.- +..+|+.||+++.. .-++++.+.+|...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-------------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~- 141 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-------------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK- 141 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-------------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH-
T ss_pred CcCceEEEcCCChhhhhhhhhcC-------------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH-
Confidence 46899999999999988887543 24689999999831 12577888888643
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC----HHHHHHHHh
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQLK 181 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~~~l~~~l~ 181 (249)
.+.+ ...++||+|+.|.......... -.....++.+.+.|+|||.+++..-.... ...+...++
T Consensus 142 ----~l~~-~~~~~yDvIi~D~~dp~~~~~~-------l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~ 209 (246)
T PF01564_consen 142 ----FLKE-TQEEKYDVIIVDLTDPDGPAPN-------LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLR 209 (246)
T ss_dssp ----HHHT-SSST-EEEEEEESSSTTSCGGG-------GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHH
T ss_pred ----HHHh-ccCCcccEEEEeCCCCCCCccc-------ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHH
Confidence 2222 2222899999997532111000 01135678899999999999987643322 334556677
Q ss_pred cCCCeeEEe
Q 025715 182 LFFPVVTFA 190 (249)
Q Consensus 182 ~~f~~v~~~ 190 (249)
..|..+..+
T Consensus 210 ~~F~~v~~~ 218 (246)
T PF01564_consen 210 SVFPQVKPY 218 (246)
T ss_dssp TTSSEEEEE
T ss_pred HhCCceEEE
Confidence 888876653
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0013 Score=59.76 Aligned_cols=70 Identities=13% Similarity=0.261 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||||||+|.++..+++.. .+|+|||+++.+ .+.+++++++|+.+.- ..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~--~~ 260 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---------------RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT--QA 260 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH--HH
Confidence 3479999999999999888653 489999999742 2457889999986532 11
Q ss_pred HHH--hc---C-----CCcccEEEeCCC
Q 025715 111 VIR--HF---D-----GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~--~~---~-----~~~~DlVlsD~~ 128 (249)
... .+ . ...+|+|+.|++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCC
Confidence 100 01 1 124899999985
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00043 Score=63.29 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||+.||+|..+..++.+.+ ...+|+++|+++.+ ...+++++++|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~------------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~----- 107 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE------------GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV----- 107 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH-----
Confidence 35899999999999999988753 13589999999843 123466777776542
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+. .. ..+||+|..|+ +. . .. ..+..+.+.+++||.+.++
T Consensus 108 l~-~~-~~~fDvIdlDP-fG---s--~~---------~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 108 LR-YR-NRKFHVIDIDP-FG---T--PA---------PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HH-Hh-CCCCCEEEeCC-CC---C--cH---------HHHHHHHHhcccCCEEEEE
Confidence 11 11 35799999998 32 1 11 2566788899999999886
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=56.01 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCc-eEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGV-IQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v-~~~~gDi~~~~~~ 108 (249)
..-+|||++||+|....-+....+. ..-.|.-.|.++.. .+.++ +|.++|..+.+..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~-----------~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPE-----------RPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCC-----------CCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence 3469999999999988777766541 12478889999842 25565 8999999997654
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC--CHHHHHHHHh
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK--DTSLLYCQLK 181 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~--~~~~l~~~l~ 181 (249)
+.+ . ...++++.-|-.... .| .+++...+.-...++.|||.++.+ -++. ....|...|.
T Consensus 204 ~~l----~-p~P~l~iVsGL~ElF----~D----n~lv~~sl~gl~~al~pgG~lIyT-gQPwHPQle~IAr~Lt 264 (311)
T PF12147_consen 204 AAL----D-PAPTLAIVSGLYELF----PD----NDLVRRSLAGLARALEPGGYLIYT-GQPWHPQLEMIARVLT 264 (311)
T ss_pred hcc----C-CCCCEEEEecchhhC----Cc----HHHHHHHHHHHHHHhCCCcEEEEc-CCCCCcchHHHHHHHh
Confidence 332 2 467898876533221 12 234556677788899999999984 4333 3333444443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.38 E-value=8.9e-05 Score=59.90 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=58.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C----CCCceEeecCCCChhhHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~----~~~v~~~~gDi~~~~~~~~ 110 (249)
..|+|++||-||-+...++.. .+|+|+|+++.+ . ..++.+++||+.+..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---------------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~---- 61 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---------------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL---- 61 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG----
T ss_pred CEEEEeccCcCHHHHHHHHhC---------------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH----
Confidence 379999999999999999864 489999999853 1 236889999987632
Q ss_pred HHHhcCCCc-ccEEEeCCC---CCCCCCCCcCH-HHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHH
Q 025715 111 VIRHFDGCK-ADLVVCDGA---PDVTGLHDMDE-FVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (249)
Q Consensus 111 i~~~~~~~~-~DlVlsD~~---~~~~g~~~~~~-~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l 180 (249)
..+.... +|+|+.+++ |++......+- .....+ ....+..+.++ -..+++.+-+..+..++..+.
T Consensus 62 --~~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 62 --KRLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp --GGB------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHHHHT-
T ss_pred --hhccccccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHh
Confidence 2232222 899998852 22221111111 000000 12233333322 344666666777777776654
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=59.88 Aligned_cols=123 Identities=22% Similarity=0.275 Sum_probs=76.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++++++||=||.|.|+..++++. .+|+|+|+++.+ .+.|+++..+|..+...
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~---------------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~- 355 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV---------------KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP- 355 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC---------------CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh-
Confidence 467899999999999999999654 699999999843 25678888888765321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh-cC--CC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK-LF--FP 185 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~-~~--f~ 185 (249)
.......+|.|+.|++ ..|. ++ .++.. ..-++|-..+.+ .+.+.+...=+..|. .. -+
T Consensus 356 ----~~~~~~~~d~VvvDPP--R~G~---~~--------~~lk~-l~~~~p~~IvYV-SCNP~TlaRDl~~L~~~gy~i~ 416 (432)
T COG2265 356 ----AWWEGYKPDVVVVDPP--RAGA---DR--------EVLKQ-LAKLKPKRIVYV-SCNPATLARDLAILASTGYEIE 416 (432)
T ss_pred ----hccccCCCCEEEECCC--CCCC---CH--------HHHHH-HHhcCCCcEEEE-eCCHHHHHHHHHHHHhCCeEEE
Confidence 1113457999999974 3443 21 12222 345666666666 455555443333333 22 34
Q ss_pred eeEEec--CCCCCC
Q 025715 186 VVTFAK--PKSSRN 197 (249)
Q Consensus 186 ~v~~~k--P~~sr~ 197 (249)
+++.+- |.+++-
T Consensus 417 ~v~~~DmFP~T~Hv 430 (432)
T COG2265 417 RVQPFDMFPHTHHV 430 (432)
T ss_pred EEEEeccCCCcccc
Confidence 444432 666653
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=54.02 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=58.0
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------------
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------ 90 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------ 90 (249)
+.+|.++.+ +.++..++|||||.|.....++...+ -.+.+||++.+..
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~-------------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~ 96 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG-------------CKKSVGIEILPELHDLAEELLEELKKRMKHY 96 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH---------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC-------------CcEEEEEEechHHHHHHHHHHHHHHHHHHHh
Confidence 334445555 47889999999999999887776554 2469999999731
Q ss_pred --CCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 91 --PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 91 --~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
....+.+.+||+.+.+....+. ...|+|++|-.. .++... ..+.....-||+|-.+|
T Consensus 97 g~~~~~v~l~~gdfl~~~~~~~~~-----s~AdvVf~Nn~~-------F~~~l~-----~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 97 GKRPGKVELIHGDFLDPDFVKDIW-----SDADVVFVNNTC-------FDPDLN-----LALAELLLELKPGARII 155 (205)
T ss_dssp TB---EEEEECS-TTTHHHHHHHG-----HC-SEEEE--TT-------T-HHHH-----HHHHHHHTTS-TT-EEE
T ss_pred hcccccceeeccCccccHhHhhhh-----cCCCEEEEeccc-------cCHHHH-----HHHHHHHhcCCCCCEEE
Confidence 0124677899999876544432 258999998521 233221 23344456678776655
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0016 Score=54.47 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=60.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC--C---C-C----CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--M---A-P----IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~--~---~-~----~~~v~~~~gDi~~~~~~~ 109 (249)
+| ..++++|..-||=+...+..+... +..++|++||+.. . + . .+++++++||..+++...
T Consensus 32 kP-d~IIE~Gi~~GGSli~~A~ml~~~---------~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 32 KP-DLIIETGIAHGGSLIFWASMLELL---------GGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp ---SEEEEE--TTSHHHHHHHHHHHHT---------T---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHH
T ss_pred CC-CeEEEEecCCCchHHHHHHHHHHh---------CCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHH
Confidence 55 799999999999887766544211 1468999999942 1 1 1 268999999999998876
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++..........+|+-|..-. .++ ..+.|+.-..++++|+.+|+
T Consensus 102 ~v~~~~~~~~~vlVilDs~H~------~~h------vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 102 QVRELASPPHPVLVILDSSHT------HEH------VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp TSGSS----SSEEEEESS----------SS------HHHHHHHHHHT--TT-EEEE
T ss_pred HHHHhhccCCceEEEECCCcc------HHH------HHHHHHHhCccCCCCCEEEE
Confidence 654433345667999887411 121 13456677789999999997
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00059 Score=56.30 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=61.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|+|+|.|-=...++=..+ +.+++.+|-..-+ .++|++++++.+.+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-------------~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------- 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-------------DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------- 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-------------TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-------
T ss_pred eEEecCCCCCChhHHHHHhCC-------------CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-------
Confidence 899999999987777765553 6899999988632 367898888877551
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
....+||+|+|-+.-. ....+..+..+|++||.+++
T Consensus 111 --~~~~~fd~v~aRAv~~---------------l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 111 --EYRESFDVVTARAVAP---------------LDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp --TTTT-EEEEEEESSSS---------------HHHHHHHHGGGEEEEEEEEE
T ss_pred --ccCCCccEEEeehhcC---------------HHHHHHHHHHhcCCCCEEEE
Confidence 1347899999976321 12467888999999999885
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00041 Score=64.70 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=60.4
Q ss_pred HHhhhhhcCcc-cC--CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------C-CCce
Q 025715 29 LLQIDEEFNIF-EG--VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I-EGVI 96 (249)
Q Consensus 29 L~ei~~~~~~~-~~--g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~-~~v~ 96 (249)
+-+|.+..+.. .. -..+||+|||.|+|+.++.++ .|+.+.+.+... + .|+-
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-----------------~V~t~s~a~~d~~~~qvqfaleRGvp 164 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-----------------NVTTMSFAPNDEHEAQVQFALERGVP 164 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-----------------CceEEEcccccCCchhhhhhhhcCcc
Confidence 34566666542 22 257999999999999999875 234444433211 1 1232
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+.+-+-.. .+ .+..++||+|.|--+.. . |..+.. -.|...-|+|+|||.|+..-.
T Consensus 165 a~~~~~~s~----rL--Pfp~~~fDmvHcsrc~i-~--W~~~~g-------~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 165 AMIGVLGSQ----RL--PFPSNAFDMVHCSRCLI-P--WHPNDG-------FLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhhhhccc----cc--cCCccchhhhhcccccc-c--chhccc-------ceeehhhhhhccCceEEecCC
Confidence 222221110 11 24668999999864321 1 111110 145667899999999998643
|
; GO: 0008168 methyltransferase activity |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00074 Score=56.39 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=60.8
Q ss_pred ccCCC-eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCc-eEeecCCCCh
Q 025715 39 FEGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGV-IQVQGDITNA 105 (249)
Q Consensus 39 ~~~g~-~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v-~~~~gDi~~~ 105 (249)
+.+.. +||++|||+|--..+.+..++ .....--|..+.. ..+++ ..+.-|++..
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP-------------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALP-------------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCC-------------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 33444 599999999999999999885 2333333443321 12332 1234566654
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...-.....+...+||.|++--... ...-......+..+.++|++||.|++
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lH---------I~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLH---------ISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred CCccccccccCCCCcceeeehhHHH---------hcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2110000011246899998742211 11122345678889999999999986
|
The function of this family is unknown. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=8.7e-05 Score=61.84 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=60.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------------CCCCceE
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------PIEGVIQ 97 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------------~~~~v~~ 97 (249)
++||.++||+|+|+|..+..++..++. +.+.++|||.-+.. ....+.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~-----------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGA-----------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcC-----------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 479999999999999999998877763 22334888876521 0124556
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.||...-.. ...+||.|.+-.+-+ .....-...|++||.+++=+
T Consensus 149 vvGDgr~g~~--------e~a~YDaIhvGAaa~-----------------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGYA--------EQAPYDAIHVGAAAS-----------------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccCC--------ccCCcceEEEccCcc-----------------ccHHHHHHhhccCCeEEEee
Confidence 6677654321 235688887753211 11233467899999999743
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00026 Score=52.54 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=39.9
Q ss_pred EEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC---C-C-------CCCceEeecCCCChhhHHHHHHh
Q 025715 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-P-------IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 46 LDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~---~-~-------~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
|++|+..|..+..+++.+... ..++++++|..+. . . -.+++++++|..+ ....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~----------~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~---- 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN----------GRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPD--FLPS---- 64 (106)
T ss_dssp ------------------------------------EEEESS------------GGG-BTEEEEES-THH--HHHH----
T ss_pred Ccccccccccccccccccccc----------ccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHH--HHHH----
Confidence 679999999999988766521 1248999999982 1 1 1368888998744 2222
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+..+++|+|+.|+.... +-....+..+...|+|||.+++
T Consensus 65 ~~~~~~dli~iDg~H~~------------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 65 LPDGPIDLIFIDGDHSY------------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHH--EEEEEEES---H------------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCCCCEEEEEECCCCCH------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 22468999999984211 1224567888999999998876
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0015 Score=62.37 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CC--CceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IE--GVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~--~v~~~~gDi~~~~~~~ 109 (249)
...+|||.|||+|+|...+++++...+.. .+....++|+|+++... .. +.....+|.......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-----~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~- 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-----KEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL- 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCc-----ccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-
Confidence 45699999999999999998877421110 00135789999987431 11 223344443321100
Q ss_pred HHHHhcCCCcccEEEeCCCCC
Q 025715 110 VVIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~ 130 (249)
.... ..+.||+|++|++..
T Consensus 105 -~~~~-~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 -NIES-YLDLFDIVITNPPYG 123 (524)
T ss_pred -cccc-ccCcccEEEeCCCcc
Confidence 0000 125799999998543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=56.28 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=54.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+||++|+|.|+.|..++++. .+|+|+++++.. ...+++.++||+...+..+
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---------------~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~- 92 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---------------ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS- 92 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---------------CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh-
Confidence 458899999999999999999875 589999998731 2467899999998765311
Q ss_pred HHHhcCCCcccEEEeCCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~ 131 (249)
+ ..++.|++|.+-+.
T Consensus 93 ----l--~~~~~vVaNlPY~I 107 (259)
T COG0030 93 ----L--AQPYKVVANLPYNI 107 (259)
T ss_pred ----h--cCCCEEEEcCCCcc
Confidence 0 06899999986443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=52.97 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=68.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----------CCCCCceE--eecCCCCh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQ--VQGDITNA 105 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----------~~~~~v~~--~~gDi~~~ 105 (249)
+.++..++|||||.|..+..+++.+... ......+++|++.. ..++.+.+ +.||.++.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~---------~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQ---------KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhc---------CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 3567799999999999999988876411 02367999999962 12455544 78888764
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH-hccCCCEEEEE
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH-VLKEGGKFIAK 166 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~-~Lk~gG~lv~k 166 (249)
-. .+..........+|+.-|+ ...|.+..... ..|....+ .|+|||.|++-
T Consensus 145 l~--~l~~~~~~~~~r~~~flGS----siGNf~~~ea~----~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 145 LA--WLKRPENRSRPTTILWLGS----SIGNFSRPEAA----AFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred Hh--hcccccccCCccEEEEeCc----cccCCCHHHHH----HHHHHHHHhhCCCCCEEEEe
Confidence 21 1111001234577777552 23344543322 34556666 89999999974
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.02 Score=50.52 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=55.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~~ 109 (249)
+++..++|.=-|-||.|+++++.++ +.++++|+|..+.+ . -++++++++++.+...
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~------------~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~-- 87 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLP------------DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE-- 87 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCC------------CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH--
Confidence 6778999999999999999999986 56889999999843 1 2478888888766432
Q ss_pred HHHHhcCCCcccEEEeCC
Q 025715 110 VVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~ 127 (249)
.....+-+++|-|+.|.
T Consensus 88 -~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 88 -ALKELGIGKVDGILLDL 104 (314)
T ss_pred -HHHhcCCCceeEEEEec
Confidence 22233446888888885
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0061 Score=53.66 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=52.9
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCC-----CCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL-----HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~-----~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
++++||..+. .+.+++++||+|++|++...... ...+.......+...+.++.++|||||.+++ ....
T Consensus 10 ~i~~gD~~~~------l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i-~~~~ 82 (284)
T PRK11524 10 TIIHGDALTE------LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI-MNST 82 (284)
T ss_pred EEEeccHHHH------HHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE-EcCc
Confidence 5678887652 23456789999999986543110 0111222334456788999999999999998 3433
Q ss_pred CCHHHHHHHHhcCC---CeeEEecC
Q 025715 171 KDTSLLYCQLKLFF---PVVTFAKP 192 (249)
Q Consensus 171 ~~~~~l~~~l~~~f---~~v~~~kP 192 (249)
.....+..+++..| ..+.+.|+
T Consensus 83 ~~~~~~~~~~~~~f~~~~~iiW~k~ 107 (284)
T PRK11524 83 ENMPFIDLYCRKLFTIKSRIVWSYD 107 (284)
T ss_pred hhhhHHHHHHhcCcceEEEEEEEeC
Confidence 33333333344333 34444554
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0037 Score=50.23 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=44.1
Q ss_pred CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 93 ~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.+++++++|+.+.+ +.+++||+|++....... .+. ..++..+.++|||||.|++..+..++
T Consensus 26 ~~i~~~~~d~~~lp--------~~~~~fD~v~~~~~l~~~----~d~-------~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 26 KCIEWIEGDAIDLP--------FDDCEFDAVTMGYGLRNV----VDR-------LRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred CceEEEEechhhCC--------CCCCCeeEEEecchhhcC----CCH-------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 35889999998754 356789999986533211 121 35788999999999999987776544
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0087 Score=52.11 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~~ 105 (249)
..++||=+|.|-|+-..-+++. + .+|+-|||++.. .-|+++.+. .
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~--------------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---- 131 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D--------------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q---- 131 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C--------------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h----
Confidence 4589999999999988777764 2 389999998732 123454442 1
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHHHh
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQLK 181 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~l~ 181 (249)
+.+. ..++||+|+.|..+. . ...+.+.+.|+|||.+++..-.+. ....+...++
T Consensus 132 -----~~~~-~~~~fDVIIvDs~~~--------~--------~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~ 189 (262)
T PRK00536 132 -----LLDL-DIKKYDLIICLQEPD--------I--------HKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMG 189 (262)
T ss_pred -----hhhc-cCCcCCEEEEcCCCC--------h--------HHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHH
Confidence 1111 236899999996432 1 234677899999999998643322 2345666677
Q ss_pred cCCCeeEEe
Q 025715 182 LFFPVVTFA 190 (249)
Q Consensus 182 ~~f~~v~~~ 190 (249)
..|..|..+
T Consensus 190 ~~F~~v~~y 198 (262)
T PRK00536 190 DFFSIAMPF 198 (262)
T ss_pred hhCCceEEE
Confidence 788876654
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0055 Score=55.50 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=61.2
Q ss_pred hhhhhcCcc-------cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--
Q 025715 31 QIDEEFNIF-------EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE-- 93 (249)
Q Consensus 31 ei~~~~~~~-------~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~-- 93 (249)
.+++++.++ .+|.+|+|.||+||..+.+++..+. ..+++.|+|++..+. ..
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~------------n~gki~afe~d~~r~~tl~~~l~~ag~ 263 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMR------------NQGKIYAFERDAKRAATLRKLLKIAGV 263 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhh------------ccCCcchhhhhhHHHHHHHHHHHHcCC
Confidence 345666554 4689999999999999999998876 468999999987431 12
Q ss_pred -CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCC
Q 025715 94 -GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (249)
Q Consensus 94 -~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~ 135 (249)
.+....+|.+.... ...+ ..+..|++|++++.+|..
T Consensus 264 ~~~~~~~~df~~t~~----~~~~--~~v~~iL~DpscSgSgm~ 300 (413)
T KOG2360|consen 264 SIVESVEGDFLNTAT----PEKF--RDVTYILVDPSCSGSGMV 300 (413)
T ss_pred CccccccccccCCCC----cccc--cceeEEEeCCCCCCCccc
Confidence 33445677766311 1112 458889999988877754
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0085 Score=56.13 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=70.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---C---C--CCceEeecCCCChhhHHHHHHh
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---P---I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---~---~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
..|+|+.+|.|||+.+|.+. .|..+..-|.. . + .|..-+.-|.... .+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----------------~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~------fs- 422 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----------------PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEA------FS- 422 (506)
T ss_pred eeeeeecccccHHHHHhccC-----------------CceEEEecccCCCCcchhhhhcccchhccchhhc------cC-
Confidence 58999999999999888652 12222332221 1 1 1221112244331 11
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeEEecCC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTFAKPK 193 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~~~kP~ 193 (249)
.-+.++|+|++++-++....+ ..+..++.+.-|+|+|||.+++.-. ..-...+..+.... |+ ++++. .
T Consensus 423 TYPRTYDLlHA~~lfs~~~~r--------C~~~~illEmDRILRP~G~~iiRD~-~~vl~~v~~i~~~lrW~-~~~~d-~ 491 (506)
T PF03141_consen 423 TYPRTYDLLHADGLFSLYKDR--------CEMEDILLEMDRILRPGGWVIIRDT-VDVLEKVKKIAKSLRWE-VRIHD-T 491 (506)
T ss_pred CCCcchhheehhhhhhhhccc--------ccHHHHHHHhHhhcCCCceEEEecc-HHHHHHHHHHHHhCcce-EEEEe-c
Confidence 124799999999865432111 1234678888999999999988421 11122333333332 33 33332 2
Q ss_pred CCCCCCceEEEEEe
Q 025715 194 SSRNSSIEAFAVCE 207 (249)
Q Consensus 194 ~sr~~s~E~y~v~~ 207 (249)
...+...|..++|+
T Consensus 492 e~g~~~~EkiL~~~ 505 (506)
T PF03141_consen 492 EDGPDGPEKILICQ 505 (506)
T ss_pred CCCCCCCceEEEEE
Confidence 33445578888885
|
; GO: 0008168 methyltransferase activity |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0053 Score=50.83 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=62.6
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------------CCCceEeecC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------------IEGVIQVQGD 101 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------------~~~v~~~~gD 101 (249)
+++|++|+|+=-|-|.|+..++..++ +.|.|+++--.+... ..|++.+..+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg------------p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~ 113 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG------------PKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKP 113 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC------------CceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCc
Confidence 38999999999999999999999887 578888875554321 1233333333
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+... ......|++...-.-..--.++... .....+...+.+.|||||.+++.-++
T Consensus 114 ~~A~---------~~pq~~d~~~~~~~yhdmh~k~i~~----~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 114 LVAL---------GAPQKLDLVPTAQNYHDMHNKNIHP----ATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccc---------CCCCcccccccchhhhhhhccccCc----chHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2221 1223445544321100000111111 11234677789999999999987663
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.001 Score=60.35 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=41.0
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh-HHH-
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART-AEV- 110 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~-~~~- 110 (249)
++|||.||.|.|+..++... .+|+|||+.+.+ .+.+++++.++..+... ...
T Consensus 199 ~vlDlycG~G~fsl~la~~~---------------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~ 263 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---------------KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKA 263 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---------------SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS
T ss_pred cEEEEeecCCHHHHHHHhhC---------------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhh
Confidence 89999999999999999764 599999998742 35788888776532110 000
Q ss_pred -----HHH-hcCCCcccEEEeCCC
Q 025715 111 -----VIR-HFDGCKADLVVCDGA 128 (249)
Q Consensus 111 -----i~~-~~~~~~~DlVlsD~~ 128 (249)
+.. .+....+|+|+.|++
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE---
T ss_pred HHHHhhhhhhhhhcCCCEEEEcCC
Confidence 000 012246899999974
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0016 Score=55.16 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=71.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCce--EeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVI--QVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~--~~~gDi~~~~~~~~ 110 (249)
+.-..++|+||+-|....++..+. -.+++-+|.+.-. .-+++. ...+|-..++
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--------------vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld---- 132 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--------------VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD---- 132 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--------------hhheeeeecchHHHHHhhccCCCceEEEEEecchhccc----
Confidence 444689999999999998887542 3578888988621 124432 2345433322
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~ 178 (249)
|.+.++|+|++.++..|.. +-+ .-+..+...|||.|.|+-.++.+...-++..
T Consensus 133 ----f~ens~DLiisSlslHW~N----dLP-------g~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 133 ----FKENSVDLIISSLSLHWTN----DLP-------GSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred ----ccccchhhhhhhhhhhhhc----cCc-------hHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 5678999999988765542 211 2345677899999999998887776655543
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0024 Score=53.25 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCCCh--HHH--HHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------C----------
Q 025715 41 GVKRVVDLCAAPGS--WSQ--VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------P---------- 91 (249)
Q Consensus 41 ~g~~vLDLG~gpG~--~s~--~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~---------- 91 (249)
+..+|+..||++|- +|. .+.+..+... +...+|+|.|+++.. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~--------~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGAL--------GWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-T--------T-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccC--------CCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 34799999999995 333 3333222110 124699999999721 0
Q ss_pred --------------CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc
Q 025715 92 --------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (249)
Q Consensus 92 --------------~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (249)
...|+|.+.|+.+... ..+.||+|+|--..-. .+. +....++....+.|
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~--------~~~~fD~I~CRNVlIY-----F~~----~~~~~vl~~l~~~L 165 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPDP--------PFGRFDLIFCRNVLIY-----FDP----ETQQRVLRRLHRSL 165 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S--------------EEEEEE-SSGGG-----S-H----HHHHHHHHHHGGGE
T ss_pred cccCCCceeEChHHcCceEEEecccCCCCc--------ccCCccEEEecCEEEE-----eCH----HHHHHHHHHHHHHc
Confidence 0246777778777211 2368999999643211 122 23456788889999
Q ss_pred cCCCEEEEE
Q 025715 158 KEGGKFIAK 166 (249)
Q Consensus 158 k~gG~lv~k 166 (249)
+|||.|++-
T Consensus 166 ~pgG~L~lG 174 (196)
T PF01739_consen 166 KPGGYLFLG 174 (196)
T ss_dssp EEEEEEEE-
T ss_pred CCCCEEEEe
Confidence 999999983
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0052 Score=53.34 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC---CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI---EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~---~~v~~~~gDi~~~~ 106 (249)
++++..||++|-|||..+..+.+.. .+|+|+++++-. .. ...+.+.||+...+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~---------------kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG---------------KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---------------CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 4889999999999999999999863 699999999832 11 24678899998754
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
...||.+++|.+++.
T Consensus 121 ----------~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 121 ----------LPRFDGCVSNLPYQI 135 (315)
T ss_pred ----------CcccceeeccCCccc
Confidence 247999999976543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0017 Score=60.77 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=48.5
Q ss_pred hhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C
Q 025715 23 ARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P 91 (249)
Q Consensus 23 ~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~ 91 (249)
+.++-+|+.+-..+.-+..+..+||+|||+|.++..+++.. .+|+||++++.+ .
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---------------~~ViGvEi~~~aV~dA~~nA~~Ng 429 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---------------KRVIGVEISPDAVEDAEKNAQING 429 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---------------cceeeeecChhhcchhhhcchhcC
Confidence 34455666655555556778999999999999999999865 599999999853 2
Q ss_pred CCCceEeec
Q 025715 92 IEGVIQVQG 100 (249)
Q Consensus 92 ~~~v~~~~g 100 (249)
+.|.+|++|
T Consensus 430 isNa~Fi~g 438 (534)
T KOG2187|consen 430 ISNATFIVG 438 (534)
T ss_pred ccceeeeec
Confidence 457888888
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.029 Score=55.53 Aligned_cols=119 Identities=10% Similarity=-0.059 Sum_probs=68.6
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcC-CCCC---------CCCC----------C---------CCCCCeEEEecCCC
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYL-PAKL---------SPDS----------R---------EGDLPLIVAIDLQP 88 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~-~~~~---------~~~~----------~---------~~~~~~vvavDi~~ 88 (249)
+.+++..++|-+||+|.+...++..... +-|. ++.. + .....+++|+|+++
T Consensus 187 w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~ 266 (702)
T PRK11783 187 WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDP 266 (702)
T ss_pred CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCH
Confidence 3356889999999999999876653210 0000 0000 0 01234799999998
Q ss_pred CC-----------CCC-CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHh
Q 025715 89 MA-----------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHV 156 (249)
Q Consensus 89 ~~-----------~~~-~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~ 156 (249)
.. .+. .+.+.++|+.+... ....+++|+|++|++.. .+-.+.....+++. .+...++.
T Consensus 267 ~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~------~~~~~~~d~IvtNPPYg---~r~~~~~~l~~lY~-~lg~~lk~ 336 (702)
T PRK11783 267 RVIQAARKNARRAGVAELITFEVKDVADLKN------PLPKGPTGLVISNPPYG---ERLGEEPALIALYS-QLGRRLKQ 336 (702)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeCChhhccc------ccccCCCCEEEECCCCc---CccCchHHHHHHHH-HHHHHHHH
Confidence 42 122 36788999877532 11225799999997532 22222223333433 34455555
Q ss_pred ccCCCEEEEE
Q 025715 157 LKEGGKFIAK 166 (249)
Q Consensus 157 Lk~gG~lv~k 166 (249)
..+|+.+++-
T Consensus 337 ~~~g~~~~ll 346 (702)
T PRK11783 337 QFGGWNAALF 346 (702)
T ss_pred hCCCCeEEEE
Confidence 5688887763
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0039 Score=54.18 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i 111 (249)
++..|||+|+|+|.+|..++++. ..++++|+++.. ..++++.+.+|+.+.+....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---------------~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~- 93 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---------------KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL- 93 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---------------SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH-
T ss_pred CCCEEEEeCCCCccchhhHhccc---------------CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh-
Confidence 78999999999999999998874 599999999731 23689999999988653211
Q ss_pred HHhcCCCcccEEEeCCC
Q 025715 112 IRHFDGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~ 128 (249)
+ .....+|+++.+
T Consensus 94 ---~-~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 ---L-KNQPLLVVGNLP 106 (262)
T ss_dssp ---C-SSSEEEEEEEET
T ss_pred ---h-cCCceEEEEEec
Confidence 1 245678888864
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.03 Score=48.21 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=49.3
Q ss_pred cCCC--eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C----------C-CCceE
Q 025715 40 EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P----------I-EGVIQ 97 (249)
Q Consensus 40 ~~g~--~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~----------~-~~v~~ 97 (249)
++|. +|||+.+|.|.-+..++.+ + +.|+++|.++.. . + .+++.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~-G--------------~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV-G--------------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 4566 8999999999999999976 3 679999999842 0 1 23455
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
+++|..+ .+. ... .+||+|..|+.+..
T Consensus 150 ~~~da~~-----~L~-~~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLT-----ALT-DIT-PRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHH-----HHh-hCC-CCCcEEEECCCCCC
Confidence 5565433 222 233 47999999987654
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=45.21 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=48.8
Q ss_pred eEEEecCCCCC-----------CC-CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 025715 80 LIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLIL 147 (249)
Q Consensus 80 ~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~ 147 (249)
+|+|+||++.+ .. .+++.+...-.+. .+.++.+++|+|+-|...-..|.+..-.. .+-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l------~~~i~~~~v~~~iFNLGYLPggDk~i~T~--~~TTl 72 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL------DEYIPEGPVDAAIFNLGYLPGGDKSITTK--PETTL 72 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG------GGT--S--EEEEEEEESB-CTS-TTSB----HHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH------HhhCccCCcCEEEEECCcCCCCCCCCCcC--cHHHH
Confidence 58999999853 11 3577776543332 22234358999999976444554433221 22235
Q ss_pred HHHHHHHHhccCCCEEEEEEecCCC
Q 025715 148 AGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 148 ~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.+++.++++|+|||.+++.++.+..
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHHHhhccCCEEEEEEeCCCC
Confidence 6899999999999999998886544
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.021 Score=48.11 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
..++||+||-........ .+ --.|+++|+++.. ++ +.+.|+++.+.. .-..++||
T Consensus 52 ~lrlLEVGals~~N~~s~---~~-------------~fdvt~IDLns~~--~~--I~qqDFm~rplp-----~~~~e~Fd 106 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SG-------------WFDVTRIDLNSQH--PG--ILQQDFMERPLP-----KNESEKFD 106 (219)
T ss_pred cceEEeecccCCCCcccc---cC-------------ceeeEEeecCCCC--CC--ceeeccccCCCC-----CCccccee
Confidence 369999998754422111 11 2469999999944 44 367788775421 01347899
Q ss_pred EEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCE-----EEEEEecC-------CCHHHHHHHHhcC-CCeeE
Q 025715 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK-----FIAKIFRG-------KDTSLLYCQLKLF-FPVVT 188 (249)
Q Consensus 122 lVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~-----lv~k~~~~-------~~~~~l~~~l~~~-f~~v~ 188 (249)
+|.+-+..++.+ ++..- -..+..+.++|+|+|. |.+-+-.+ .+...+..+|... |..+.
T Consensus 107 vIs~SLVLNfVP----~p~~R----G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 107 VISLSLVLNFVP----DPKQR----GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred EEEEEEEEeeCC----CHHHH----HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence 999877655432 22111 1357788999999999 76633221 1233445555543 77777
Q ss_pred Ee
Q 025715 189 FA 190 (249)
Q Consensus 189 ~~ 190 (249)
..
T Consensus 179 ~~ 180 (219)
T PF11968_consen 179 YK 180 (219)
T ss_pred EE
Confidence 53
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.033 Score=47.47 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=53.6
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCC-----cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD-----MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~-----~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+.++||..+ +.+.++++++|+|+.|++-.. +..+ .......+.....+.++.++|||||.+++- +..
T Consensus 3 ~l~~gD~le------~l~~lpd~SVDLIiTDPPY~i-~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if-~~~ 74 (227)
T PRK13699 3 RFILGNCID------VMARFPDNAVDFILTDPPYLV-GFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF-YGW 74 (227)
T ss_pred eEEechHHH------HHHhCCccccceEEeCCCccc-ccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE-ecc
Confidence 456777654 334578899999999986432 1111 111112344567889999999999998862 222
Q ss_pred CCHHHHHHHHhc-CC---CeeEEecCCCC
Q 025715 171 KDTSLLYCQLKL-FF---PVVTFAKPKSS 195 (249)
Q Consensus 171 ~~~~~l~~~l~~-~f---~~v~~~kP~~s 195 (249)
.....+...++. -| ..+.+.|+...
T Consensus 75 ~~~~~~~~al~~~GF~l~~~IiW~K~~~~ 103 (227)
T PRK13699 75 NRVDRFMAAWKNAGFSVVGHLVFTKNYTS 103 (227)
T ss_pred ccHHHHHHHHHHCCCEEeeEEEEECCCCC
Confidence 223344444443 24 44566676543
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.016 Score=51.89 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=74.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCC---------------CC-----ceEe
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI---------------EG-----VIQV 98 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~---------------~~-----v~~~ 98 (249)
.+||.-|.|=-.|||++....++. | +.|+|-||+-.... ++ +..+
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F-G--------------a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl 270 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF-G--------------AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL 270 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh-c--------------ceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee
Confidence 379999999999999999877765 3 79999999863210 11 2346
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCC------CC----------------CCcCHHHHHHHHHHHHHHHHHh
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT------GL----------------HDMDEFVQSQLILAGLTVVTHV 156 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~------g~----------------~~~~~~~~~~l~~~~l~~a~~~ 156 (249)
.+|.+++.. . .+-.||.|+||++-.+. |- ....++....++...+..+.+.
T Consensus 271 ~~D~sn~~~----r---sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~ 343 (421)
T KOG2671|consen 271 TADFSNPPL----R---SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRR 343 (421)
T ss_pred eecccCcch----h---hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhh
Confidence 778888653 2 24579999999742210 00 1112334455678889999999
Q ss_pred ccCCCEEEEEE
Q 025715 157 LKEGGKFIAKI 167 (249)
Q Consensus 157 Lk~gG~lv~k~ 167 (249)
|.-||++|+-+
T Consensus 344 L~~ggrlv~w~ 354 (421)
T KOG2671|consen 344 LVDGGRLVFWL 354 (421)
T ss_pred hhcCceEEEec
Confidence 99999999843
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.015 Score=51.28 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.||+|+|--..-. .+. +....++....+.|+|||.|++
T Consensus 222 ~~fD~I~cRNvliy-----F~~----~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 222 GPFDAIFCRNVMIY-----FDK----TTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred CCcceeeHhhHHhc-----CCH----HHHHHHHHHHHHHhCCCcEEEE
Confidence 67999998532211 121 1234678888999999998876
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.056 Score=44.88 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=58.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~~~~~~~ 109 (249)
-.|++|||+|+|+|--+.+.+... ...|++.|+.|... .. .+.+...|+..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG--------------A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----- 138 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG--------------AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----- 138 (218)
T ss_pred cccceeeecccccChHHHHHHHhh--------------hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-----
Confidence 458999999999999887777543 36888889887431 12 23444555543
Q ss_pred HHHHhcCCCcccEEEe-CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 110 VVIRHFDGCKADLVVC-DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 110 ~i~~~~~~~~~DlVls-D~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.+..||+|++ |... ++.... ..+. ....|+-.|.-|+ ++.+.+
T Consensus 139 ------~~~~~Dl~LagDlfy--------~~~~a~----~l~~-~~~~l~~~g~~vl-vgdp~R 182 (218)
T COG3897 139 ------SPPAFDLLLAGDLFY--------NHTEAD----RLIP-WKDRLAEAGAAVL-VGDPGR 182 (218)
T ss_pred ------CCcceeEEEeeceec--------CchHHH----HHHH-HHHHHHhCCCEEE-EeCCCC
Confidence 3468999975 3221 221111 2222 5666777777777 676544
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.064 Score=48.17 Aligned_cols=95 Identities=27% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC---C-CC-CCceEeecCCCChhhHHHHHHhc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-PI-EGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~---~-~~-~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.-...+|+|.|.|..+-.+....+ ..+.+-.|+... + .+ +||..+.||.... +
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp-------------~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~-------- 234 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYP-------------HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-T-------- 234 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCC-------------CCceeecCHHHHHhhhhhhcCCcceeccccccc-C--------
Confidence 347899999999999999888553 344444454432 1 24 7888888998763 1
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ +-|+|+.- .+.+.|. |+. +.+.|+.+.+.|+|||.++++..
T Consensus 235 P--~~daI~mk---WiLhdwt-Ded-----cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 235 P--KGDAIWMK---WILHDWT-DED-----CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred C--CcCeEEEE---eecccCC-hHH-----HHHHHHHHHHhCCCCCEEEEEec
Confidence 2 45677752 2334443 222 45789999999999999998765
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.031 Score=47.12 Aligned_cols=96 Identities=18% Similarity=0.079 Sum_probs=53.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCC-ceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEG-VIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~-v~~~~gDi~~~~~~~~ 110 (249)
..+.||.|||-|..|..++.... -+|-.||..+.- . ..+ .++++.-+.+...
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f--------------~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P--- 118 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF--------------DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP--- 118 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---------------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------
T ss_pred cceEEecccccchhHHHHHHHhc--------------CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC---
Confidence 46999999999999986643222 467667766510 0 112 2333333333211
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..++||+|.+-= +.|. -.|+ -+...|..+...|+|||.+++|.-
T Consensus 119 -----~~~~YDlIW~QW---~lgh-LTD~-----dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 119 -----EEGKYDLIWIQW---CLGH-LTDE-----DLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp ------TT-EEEEEEES----GGG-S-HH-----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----CCCcEeEEEehH---hhcc-CCHH-----HHHHHHHHHHHhCcCCcEEEEEec
Confidence 236899999731 1221 1222 134678899999999999999843
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.06 Score=47.04 Aligned_cols=99 Identities=20% Similarity=0.138 Sum_probs=60.3
Q ss_pred CCeEEEEcCCCCh----HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------CC---------
Q 025715 42 VKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PI--------- 92 (249)
Q Consensus 42 g~~vLDLG~gpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------~~--------- 92 (249)
.-+|.-.||++|- .+..+.+.++. ..+...+|+|.||+... .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~--------~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF 168 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK--------LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYF 168 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc--------ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhE
Confidence 4689999999994 44445554431 00124689999998621 00
Q ss_pred ---------------CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc
Q 025715 93 ---------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (249)
Q Consensus 93 ---------------~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (249)
..|.|-+.|+.+... ..+.||+|+|--..-. .+++ .+..++..-...|
T Consensus 169 ~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--------~~~~fD~IfCRNVLIY-----Fd~~----~q~~il~~f~~~L 231 (268)
T COG1352 169 ERGGDGSYRVKEELRKMVRFRRHNLLDDSP--------FLGKFDLIFCRNVLIY-----FDEE----TQERILRRFADSL 231 (268)
T ss_pred eecCCCcEEEChHHhcccEEeecCCCCCcc--------ccCCCCEEEEcceEEe-----eCHH----HHHHHHHHHHHHh
Confidence 124455555555321 2357999999532111 2332 2345677778999
Q ss_pred cCCCEEEE
Q 025715 158 KEGGKFIA 165 (249)
Q Consensus 158 k~gG~lv~ 165 (249)
+|||.|++
T Consensus 232 ~~gG~Lfl 239 (268)
T COG1352 232 KPGGLLFL 239 (268)
T ss_pred CCCCEEEE
Confidence 99999997
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.025 Score=43.88 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=36.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN 104 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~ 104 (249)
+++|+||+.|.++..+++..+ .++|+++|.++.. .++++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-------------~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-------------EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-------------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999887653 4699999999832 13456667666655
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.03 Score=43.87 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=32.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
.+..+|+|+|||-|..+.+++..+... .....|++||.++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~---------~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS---------SPNLRVLGIDCNES 64 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc---------CCCCeEEEEECCcH
Confidence 467899999999999999999855311 13579999999974
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.17 Score=37.60 Aligned_cols=94 Identities=24% Similarity=0.280 Sum_probs=56.3
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C--CC---ceEeecCCCChhhHHHHHH
Q 025715 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I--EG---VIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 45 vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~--~~---v~~~~gDi~~~~~~~~i~~ 113 (249)
++|+|||+|..+ .+..... ....++++|+++... . .. +.+..+|..... .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 112 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG------------RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGV------L 112 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC------------CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCC------C
Confidence 999999999988 4444332 114788889887320 1 11 355666655410 0
Q ss_pred hcCC-CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 114 HFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 114 ~~~~-~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+.. ..+|++.+....... . ....+..+.+.|+|+|.+++....
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~-----~-------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 113 PFEDSASFDLVISLLVLHLL-----P-------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CCCCCCceeEEeeeeehhcC-----C-------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 1233 378998332221111 1 134677888999999999987664
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.033 Score=48.77 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
|.||.....-++| .+|||+|||||.-+-++.+..+ ...+++.+|.++.
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~------------~~~~~~~vd~s~~ 69 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWP------------SLKEYTCVDRSPE 69 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhc------------CceeeeeecCCHH
Confidence 5566666655566 5999999999998777776654 2358899999874
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.059 Score=55.50 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=62.2
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec-C-CCHHHHHHHHhcCCCeeEEecC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-G-KDTSLLYCQLKLFFPVVTFAKP 192 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-~-~~~~~l~~~l~~~f~~v~~~kP 192 (249)
++.+.|.+|.||.--...|. .+-..+.+...+++..++++..+||.+|+|+-= . .-...+...+..+|..+.++||
T Consensus 565 ~pTGtf~fVYSDVDQV~dg~--~dl~As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~ivKP 642 (1289)
T PF06016_consen 565 FPTGTFTFVYSDVDQVQDGG--DDLVASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYHIVKP 642 (1289)
T ss_dssp -S---EEEEEEE-----SST--TTHHHHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEEEEEE
T ss_pred CCCCceEEEEecchhhccCC--cchhhhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceeeEecc
Confidence 56789999999963212222 344455667788899999999999999999852 2 2255676666777999999999
Q ss_pred CCCCCCCceEEEEEeeccCCCCCCc
Q 025715 193 KSSRNSSIEAFAVCENYFPPEGFNP 217 (249)
Q Consensus 193 ~~sr~~s~E~y~v~~g~~~~~~~~~ 217 (249)
.-.+ |.|+|++--+........+
T Consensus 643 lI~N--NvEvflv~~~~~~~~~~~~ 665 (1289)
T PF06016_consen 643 LIVN--NVEVFLVFGGRTPSGNLTP 665 (1289)
T ss_dssp ESSS--S--EEEEECECSTT----B
T ss_pred eeec--ceEEEEEEEeecCCCCCCC
Confidence 8764 6899999444434454443
|
The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.21 Score=44.59 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=62.5
Q ss_pred cCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCC--ChhhH-HHH
Q 025715 40 EGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDIT--NARTA-EVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~--~~~~~-~~i 111 (249)
++|.+||=+||||=|.... .++.++ ..+|+.+|+.+.+. .-|.+.+.-+-. +++.. +.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~G-------------A~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMG-------------ASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELV 234 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcC-------------CCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHH
Confidence 6789999999999666554 566665 47999999998541 113322211111 22222 223
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
...+....+|+++ +++|.. ..++.|...+++||++++-.+.++
T Consensus 235 ~~~~g~~~~d~~~-----dCsG~~------------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 235 EKALGKKQPDVTF-----DCSGAE------------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred HhhccccCCCeEE-----EccCch------------HHHHHHHHHhccCCEEEEeccCCC
Confidence 3334445577776 455541 346678899999999887665443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.0088 Score=51.86 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=34.6
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
++..|+++.+.+.... .+ +.++|+|++-....... .+ .+.+..++....++|||||.|++-
T Consensus 138 Vv~cDV~~~~pl~~~~-~~-p~~~D~v~s~fcLE~a~-~d------~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPV-VL-PPKFDCVISSFCLESAC-KD------LDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp EEE--TTSSSTTTTS--SS--SSEEEEEEESSHHHH--SS------HHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEeeccCCCCCCccc-cC-ccchhhhhhhHHHHHHc-CC------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4567777765421100 01 13599998865322110 11 223567889999999999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.28 Score=42.76 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=53.9
Q ss_pred CeEEEEcCCC--ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCC--ceEeecCCCChhhHH
Q 025715 43 KRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEG--VIQVQGDITNARTAE 109 (249)
Q Consensus 43 ~~vLDLG~gp--G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~--v~~~~gDi~~~~~~~ 109 (249)
..+||||||= -+-.-.+++... ++++|+=||..|+. .-++ ..++++|+++++.+-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~------------P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA------------PDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-------------TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC------------CCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence 5799999983 223334556655 67999999999952 1244 678999999986531
Q ss_pred H---HHHhcC-CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 110 V---VIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 110 ~---i~~~~~-~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
. +...+. ++.+-+++... ..... +.+.. ..++..-...|.||..|+++.....
T Consensus 138 ~~p~~~~~lD~~rPVavll~~v-Lh~v~--D~~dp------~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAV-LHFVP--DDDDP------AGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT--GGGS---CGCTH------HHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCHHHHhcCCCCCCeeeeeeee-eccCC--CccCH------HHHHHHHHHhCCCCceEEEEecCCC
Confidence 1 111121 23444444432 22211 11111 2456667889999999999877554
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.28 Score=44.88 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=73.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCC----CCC-----C-----------------CCCCCCCeEEEecCCCCC---
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK----LSP-----D-----------------SREGDLPLIVAIDLQPMA--- 90 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~----~~~-----~-----------------~~~~~~~~vvavDi~~~~--- 90 (249)
+++..++|-=||+|.+..-++.......+ .++ . ..+.+-..++|+|+++-.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 35679999999999999877654321110 000 0 001111157799999832
Q ss_pred --------CC-CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC
Q 025715 91 --------PI-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (249)
Q Consensus 91 --------~~-~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG 161 (249)
.+ .-++|.++|+++... .+ +.+|+|+||++ .|.+-.++.....|+......+.+.++.-+
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~--~~~gvvI~NPP---YGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE------PL--EEYGVVISNPP---YGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC------CC--CcCCEEEeCCC---cchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 12 347899999988542 11 58999999974 344444444444577666667778888777
Q ss_pred EEEEEE
Q 025715 162 KFIAKI 167 (249)
Q Consensus 162 ~lv~k~ 167 (249)
.+++..
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 777643
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.052 Score=45.90 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C---C-CCceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---I-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~---~-~~v~~~~gDi~~~~~~~ 109 (249)
...|+|.-||-||-+...+.+. +.|+++|++|.+ . + .+|+|++||+.+.-.-.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~---------------~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG---------------PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL 159 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC---------------CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH
Confidence 3678888888777776655443 689999999953 1 2 36899999998753222
Q ss_pred HHHHhcCCCcccEEEeCC
Q 025715 110 VVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~ 127 (249)
+ +....+|+|..-+
T Consensus 160 q----~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 160 K----ADKIKYDCVFLSP 173 (263)
T ss_pred h----hhhheeeeeecCC
Confidence 2 1223477777544
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.066 Score=46.87 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=45.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+|+||+||.|+++..+.+. + -..|.++|+++.+. .++. .+.+|+.+.... .+
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~-G-------------~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~-----~~- 59 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA-G-------------FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEK-----DF- 59 (275)
T ss_pred CcEEEEccCcchHHHHHHHc-C-------------CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchh-----hc-
Confidence 37999999999999887653 2 14678999998541 2332 567888875421 11
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
...+|+|+.++++
T Consensus 60 ~~~~D~l~~gpPC 72 (275)
T cd00315 60 IPDIDLLTGGFPC 72 (275)
T ss_pred CCCCCEEEeCCCC
Confidence 2469999988754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.12 Score=48.98 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=74.5
Q ss_pred cchhhhhhHH-hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C
Q 025715 21 WRARSAFKLL-QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P 91 (249)
Q Consensus 21 ~~~ra~~KL~-ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~ 91 (249)
|-+|+..+|+ ++..- .+..+|.|-+||+|++...+.+.++... ....++|.++++.. .
T Consensus 169 yTP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~---------~~~~~yGqE~~~~t~~l~~mN~~ 235 (489)
T COG0286 169 YTPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQ---------DEIFIYGQEINDTTYRLAKMNLI 235 (489)
T ss_pred CChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhc---------cceeEEEEeCCHHHHHHHHHHHH
Confidence 4566655553 22211 4677999999999999998888875210 03678999987631 1
Q ss_pred CCCc----eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcC------H----HH---H-HHHHHHHHHHH
Q 025715 92 IEGV----IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD------E----FV---Q-SQLILAGLTVV 153 (249)
Q Consensus 92 ~~~v----~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~------~----~~---~-~~l~~~~l~~a 153 (249)
+.++ ....+|-...+.... ....+.||+|+++++++..+-.... . .. . ..--.+.+..+
T Consensus 236 lhgi~~~~~i~~~dtl~~~~~~~---~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~ 312 (489)
T COG0286 236 LHGIEGDANIRHGDTLSNPKHDD---KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHI 312 (489)
T ss_pred HhCCCccccccccccccCCcccc---cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHH
Confidence 2222 233444332221100 1133679999999977522211100 0 00 0 00114567788
Q ss_pred HHhccCCCEEEEEEe
Q 025715 154 THVLKEGGKFIAKIF 168 (249)
Q Consensus 154 ~~~Lk~gG~lv~k~~ 168 (249)
...|+|||+..+.+.
T Consensus 313 ~~~l~~~g~aaivl~ 327 (489)
T COG0286 313 LYKLKPGGRAAIVLP 327 (489)
T ss_pred HHhcCCCceEEEEec
Confidence 889999997766544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.054 Score=49.39 Aligned_cols=96 Identities=23% Similarity=0.197 Sum_probs=64.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~-~v~~~~gDi~~~~~ 107 (249)
.++..++|+|||-|+.+.++...- ...++++|.++... +. ...+..+|+.+.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--------------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~- 173 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--------------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP- 173 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--------------cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-
Confidence 577899999999999999998754 37889999987421 11 1223445655533
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+..||.|-+-=. ++ +-.+. ...+++..+.++|||.++++.+
T Consensus 174 -------fedn~fd~v~~ld~--~~--~~~~~-------~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 174 -------FEDNTFDGVRFLEV--VC--HAPDL-------EKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred -------CCccccCcEEEEee--cc--cCCcH-------HHHHHHHhcccCCCceEEeHHH
Confidence 45678888865321 11 11232 3567888999999999998754
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.89 Score=36.81 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=66.3
Q ss_pred EEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------------CCCceEe-ecCCCChhhHH
Q 025715 47 DLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------------IEGVIQV-QGDITNARTAE 109 (249)
Q Consensus 47 DLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------------~~~v~~~-~gDi~~~~~~~ 109 (249)
=+|.|-=+||..+++..+ ....++|-....... -.|+.++ .-|.++.....
T Consensus 2 lvGeGdfSFs~sL~~~~~------------~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~ 69 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFG------------SATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHF 69 (166)
T ss_pred eeeccchHHHHHHHHHcC------------CCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccc
Confidence 367888888888888765 234566655443210 1244333 34666644211
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCH--HHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDE--FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~--~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
.+....||.|+=|-+....+..+... ....+|+...+..|.++|+++|.+.+.+..+.
T Consensus 70 ----~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 70 ----RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred ----cccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12567899999886432211211111 12345788899999999999999999887653
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.61 Score=39.52 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCC--CCCCC---CCceEeecCCCChhhHHHHHH--
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ--PMAPI---EGVIQVQGDITNARTAEVVIR-- 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~--~~~~~---~~v~~~~gDi~~~~~~~~i~~-- 113 (249)
....||=.||..||..-+++..+.+ ++..|+|.-.+ +|..+ .|+....-|+++++.......
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~-----------~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFAR-----------NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHh-----------CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHH
Confidence 3468999999999999999887763 35688887665 45443 477788899999876544322
Q ss_pred -hcCCCcccEEEeCCCCCCCCCC-CcCHHH-----------HHHHHHHHHHHHHHhccCCCEEEE
Q 025715 114 -HFDGCKADLVVCDGAPDVTGLH-DMDEFV-----------QSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 114 -~~~~~~~DlVlsD~~~~~~g~~-~~~~~~-----------~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.++.++.|+.+.|..-+|++.- +.+-.. .++++++. ...+.|..|++|-
T Consensus 75 r~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~---~h~likaKGtIVn 136 (289)
T KOG1209|consen 75 RANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRAL---SHFLIKAKGTIVN 136 (289)
T ss_pred hhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHH---HHHHHHccceEEE
Confidence 2367899999999865555421 111111 23344322 2557788898884
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.35 Score=43.16 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=48.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~~ 109 (249)
+++..++|.=-|.||.|..+++.++ .++++|+|.++.+ . -.++.+++++..+...
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~-------------~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~-- 83 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLP-------------NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE-- 83 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-T-------------T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH--
T ss_pred CCCceEEeecCCcHHHHHHHHHhCC-------------CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH--
Confidence 6778999999999999999999885 4999999999843 1 2468888998877543
Q ss_pred HHHHhc-CCCcccEEEeCC
Q 025715 110 VVIRHF-DGCKADLVVCDG 127 (249)
Q Consensus 110 ~i~~~~-~~~~~DlVlsD~ 127 (249)
+.... ...++|-|+.|.
T Consensus 84 -~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 84 -YLKELNGINKVDGILFDL 101 (310)
T ss_dssp -HHHHTTTTS-EEEEEEE-
T ss_pred -HHHHccCCCccCEEEEcc
Confidence 33333 446899999995
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.4 Score=43.65 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=67.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------------CCCCceEeecC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PIEGVIQVQGD 101 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------~~~~v~~~~gD 101 (249)
+.-.+||=||.|-|-=...+.+. + .-.+|+-||++|.. .-++++.+..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P------------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD 354 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-P------------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD 354 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-C------------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence 44578999999988654444432 2 35789999999831 12567778888
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecC
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
..+.- .. ....||.|+.|..-. +.....+++ ......+.+.|+++|.+|+..-++
T Consensus 355 Af~wl-----r~--a~~~fD~vIVDl~DP-------~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 355 AFQWL-----RT--AADMFDVVIVDLPDP-------STPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred HHHHH-----Hh--hcccccEEEEeCCCC-------CCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 76642 11 235899999997421 111122332 345667889999999999875443
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.96 Score=35.95 Aligned_cols=99 Identities=20% Similarity=0.171 Sum_probs=54.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
.-||+||=|.|---.++.+.++ +..|+++|..-.. .-+.-.+++||+.+ ++.. ...++ .
T Consensus 30 G~VlElGLGNGRTydHLRe~~p-------------~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~--tl~~-~~~~g-~ 92 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFP-------------DRRIYVFDRALACHPSSTPPEEDLILGDIRE--TLPA-LARFG-A 92 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---------------SS-EEEEESS--S-GGG---GGGEEES-HHH--HHHH-HHHH--S
T ss_pred CceEEeccCCCccHHHHHHhCC-------------CCeEEEEeeecccCCCCCCchHheeeccHHH--HhHH-HHhcC-C
Confidence 4899999999999999999986 6799999986432 11234578999865 3333 23344 6
Q ss_pred cccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 119 ~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.-++.+|... |.++.+.. ....+--.+-.+|.|||.+|.
T Consensus 93 ~a~laHaD~G~---g~~~~d~a----~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 93 GAALAHADIGT---GDKEKDDA----TAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp -EEEEEE-------S-HHHHHH----HHHHHHHHHGGGEEEEEEEEE
T ss_pred ceEEEEeecCC---CCcchhHH----HHHhhhHHHHHHhcCCcEEEe
Confidence 78999999642 32222211 112223345679999998875
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=3.2 Score=34.43 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=51.8
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
+||=.|+ +|+....+++++.. .+..|++++.++.. ...++.+...|+.+.+....+.+.+..+
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLE-----------RGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHh-----------CCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 4555554 67888887777642 23589999988743 1345677889999988777776666556
Q ss_pred cccEEEeCCC
Q 025715 119 KADLVVCDGA 128 (249)
Q Consensus 119 ~~DlVlsD~~ 128 (249)
.+|.|+.+..
T Consensus 71 ~id~vi~~ag 80 (225)
T PRK08177 71 RFDLLFVNAG 80 (225)
T ss_pred CCCEEEEcCc
Confidence 7999998864
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=3.4 Score=35.23 Aligned_cols=78 Identities=17% Similarity=0.041 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.|+++|=.|+++ ++....+++++.. ....|+.++.+... .+..+.+++.|+++.+..+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-----------LGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------cCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHH
Confidence 467899999998 4888888877642 23577777776421 12334567899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+. -+++|+++.+...
T Consensus 78 ~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHHcCCCCEEEEcCcc
Confidence 443321 1479999998753
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.93 Score=43.29 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCCChhHHHHHHhccchhhhhhHHhhhhhcCc----------ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCC
Q 025715 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNI----------FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSRE 75 (249)
Q Consensus 7 ~~~d~~~~~a~~~~~~~ra~~KL~ei~~~~~~----------~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~ 75 (249)
++.|-+.+++...||++ ..+--+.++- ..++.+|+=+|+|+=|.... .++.++
T Consensus 125 q~~d~lssma~IAGy~A-----v~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG----------- 188 (509)
T PRK09424 125 QSLDALSSMANIAGYRA-----VIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG----------- 188 (509)
T ss_pred CCcccccchhhhhHHHH-----HHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC-----------
Confidence 56688999999999875 2333233321 14689999999999776654 555655
Q ss_pred CCCCeEEEecCCCCCC----CCCceEeecCCCC-------------hhhHHHHHHhcCC--CcccEEEeCCCCCCCCCCC
Q 025715 76 GDLPLIVAIDLQPMAP----IEGVIQVQGDITN-------------ARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHD 136 (249)
Q Consensus 76 ~~~~~vvavDi~~~~~----~~~v~~~~gDi~~-------------~~~~~~i~~~~~~--~~~DlVlsD~~~~~~g~~~ 136 (249)
..|+++|+++.+. --|.+++.-|..+ .+..+...+.+.+ +.+|+|+.-... .+.+.
T Consensus 189 ---A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~--pg~~a 263 (509)
T PRK09424 189 ---AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALI--PGKPA 263 (509)
T ss_pred ---CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCC--CcccC
Confidence 5899999998431 1244433222211 0111111111221 469999864321 11111
Q ss_pred cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 137 MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 137 ~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.. ...+.+.+.+||||.++.--.
T Consensus 264 P~---------lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 264 PK---------LITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cc---------hHHHHHHHhcCCCCEEEEEcc
Confidence 10 124778899999999886433
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.084 Score=46.53 Aligned_cols=65 Identities=23% Similarity=0.363 Sum_probs=43.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+|+||+||-||++..+.+... -.+.|+|+++.+. .+ ....+||++.... .++
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~--------------~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----~l~ 59 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF--------------EVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----DLP 59 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE--------------EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----HHH
T ss_pred CcEEEEccCccHHHHHHHhcCc--------------EEEEEeecCHHHHHhhhhccc--ccccccccccccc-----ccc
Confidence 4799999999999988875421 3678999998541 23 6678999886542 234
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
. .+|+++.-++|
T Consensus 60 ~-~~D~l~ggpPC 71 (335)
T PF00145_consen 60 K-DVDLLIGGPPC 71 (335)
T ss_dssp H-T-SEEEEE---
T ss_pred c-cceEEEeccCC
Confidence 3 59999976543
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.1 Score=40.60 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=54.6
Q ss_pred cCCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+||.+|+=.|+| -|.....+++.++ .+|+++|+++.+. +-...++... +.+..+.+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g--------------a~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~- 227 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG--------------AEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVK- 227 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhH-
Confidence 689999999988 1222223455554 7999999998642 2112233322 333322222
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+|+|+.-.. . ..+..+.+.|++||++++-
T Consensus 228 ----~~~d~ii~tv~-~-----------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 228 ----EIADAIIDTVG-P-----------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ----hhCcEEEECCC-h-----------------hhHHHHHHHHhcCCEEEEE
Confidence 23999986432 1 2467789999999999984
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.43 Score=43.55 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=35.0
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
|.|+-.+...+.+-..|+|+|+|+|..++.++-..+ -.|+|||-+.
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~--------------lsV~aIegsq 186 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG--------------LSVKAIEGSQ 186 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC--------------ceEEEeccch
Confidence 344444444455668999999999999999986654 6899999875
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=90.51 E-value=2.6 Score=38.35 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCCCh-hhHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNA-RTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~~~-~~~~~i 111 (249)
+++|.+||..|+|+ |..+..+++..+ ...|+++|.++.+ ...++..+. ..+. ...+.+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-------------~~~vi~~~~~~~~~~~~~~~~~~~vi~--~~~~~~~~~~l 246 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-------------AERVIAIDRVPERLEMARSHLGAETIN--FEEVDDVVEAL 246 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCcEEEc--CCcchHHHHHH
Confidence 46789999998876 666666777664 2368999887632 111333332 2222 123334
Q ss_pred HHhcCCCcccEEEeCCCCCCCC-C-CCc-CHH-HHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTG-L-HDM-DEF-VQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g-~-~~~-~~~-~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+...+..+|+|+--....... . .+. ++. ....--...+..+.++|+++|++++-
T Consensus 247 ~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 247 RELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 4434445799998632110000 0 000 000 00000013567778899999999874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.45 E-value=7.3 Score=32.54 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=68.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+| ..|++.|..-||-....+..+.. .+...+|+++|++--. ..+++.+++|+-+++....++..
T Consensus 69 ~P-~lvIE~Gs~~GGSal~fA~~m~s---------~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~ 138 (237)
T COG3510 69 QP-SLVIEFGSRHGGSALFFANMMIS---------IGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRR 138 (237)
T ss_pred CC-ceeEeeccccCchhhhhhHhHHh---------cCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 45 69999999999977776665431 1144688888887422 26899999999999988877765
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.-.+.+-=+|+.|. +|. .+-..+.++.-..+|.-|-.+|+.
T Consensus 139 ~~~~y~kIfvilDs----------dHs--~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 139 LKNEYPKIFVILDS----------DHS--MEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred HhcCCCcEEEEecC----------Cch--HHHHHHHHHHhhhHhhcCceEEEe
Confidence 43333322334432 111 111235666667788888888764
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.25 Score=39.64 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=33.1
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.|.++++|+|++-- ...+ ...+....+++++.++|||||.|-|.+-.
T Consensus 42 ~F~dns~d~iyaeH--------vlEH-lt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 42 MFEDNSVDAIYAEH--------VLEH-LTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cCCCcchHHHHHHH--------HHHH-HhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 46778899988631 1122 22334467899999999999999997754
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.1 Score=39.38 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=63.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C---CCCc-eEeecCCCChhhHHHHHHh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P---IEGV-IQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~---~~~v-~~~~gDi~~~~~~~~i~~~ 114 (249)
..|..++|.|||-|-.. .. ++.+.+++.|+.... . -.|. ....+|+.+.+
T Consensus 44 ~~gsv~~d~gCGngky~-------~~----------~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p-------- 98 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYL-------GV----------NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLP-------- 98 (293)
T ss_pred CCcceeeecccCCcccC-------cC----------CCcceeeecchhhhhccccccCCCceeehhhhhcCC--------
Confidence 45889999999999622 21 135789999998632 1 1222 34456666543
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+...+||..++-..... ......-..+++...+.|+|||...+-++..
T Consensus 99 ~~~~s~d~~lsiavihh--------lsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 99 FREESFDAALSIAVIHH--------LSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred CCCCccccchhhhhhhh--------hhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 35678999887543221 1111223567889999999999988877743
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=6.6 Score=33.29 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CC--CCceEeecCCCChhhHHHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PI--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
.++++|=.|++. ++....+++.+.. .+.+|+.++.+... .+ ..+.+++.|+++.+..+.+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD-----------QGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHH
Confidence 357899999886 7888888887742 34678877765310 11 24667889999987665544
Q ss_pred HhcC--CCcccEEEeCCC
Q 025715 113 RHFD--GCKADLVVCDGA 128 (249)
Q Consensus 113 ~~~~--~~~~DlVlsD~~ 128 (249)
+.+. -+++|+++.+..
T Consensus 75 ~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHHHhCCCCEEEEccc
Confidence 4321 157999999864
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.16 E-value=2.4 Score=38.31 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++.+|+=+||||=|.... +++..+ ..+|+++|+++.+. .-+...+...-.+ .....+...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-------------a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~ 233 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-------------ASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILEL 233 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-------------CceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHH
Confidence 445999999999777654 455544 47999999988541 1122222111111 222223332
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
-.+..+|+|+= ++|. ..++..+..+++|||++++.-..
T Consensus 234 t~g~g~D~vie-----~~G~------------~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 234 TGGRGADVVIE-----AVGS------------PPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred hCCCCCCEEEE-----CCCC------------HHHHHHHHHHhcCCCEEEEEecc
Confidence 23347999983 4552 13678899999999999975443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.5 Score=35.41 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
|++++=+|+. =-|.++++-..+ ..+|+.|+-++...-...+..-..+.-.+..+.. ... .++||
T Consensus 2 ~~~g~V~GS~-~PwvEv~aL~~G-------------A~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~-~~y-~~~fD 65 (177)
T PF03269_consen 2 GKSGLVVGSM-QPWVEVMALQHG-------------AAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNW-QKY-AGSFD 65 (177)
T ss_pred CceEEEEecC-CchhhHHHHHcC-------------CceEEEEeecccccCcccccccccccHHHHHHHH-HHh-hccch
Confidence 4566777766 457777665544 4688889988754211110000111111111111 112 36899
Q ss_pred EEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 122 LVVCDGAPDVTGLHDM-DEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 122 lVlsD~~~~~~g~~~~-~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+.|-.+....|..-. |+.....- ..++..+.++|||||.|.+.+-
T Consensus 66 ~~as~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 66 FAASFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hhheechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEee
Confidence 9988766554443211 11000000 2456677889999999998765
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=7.1 Score=33.19 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CCCCceEeecCCCChhhHHHHHHhc--CC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHF--DG 117 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~~~v~~~~gDi~~~~~~~~i~~~~--~~ 117 (249)
+.++|=.| |+|+....+++++.. .+.+|++++.++.. ...+++++.+|+++.+..+.+.+.. ..
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLAR-----------AGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHH-----------CCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 35677777 568888888877642 24688888887533 2457888999999987655544332 12
Q ss_pred CcccEEEeCCCC
Q 025715 118 CKADLVVCDGAP 129 (249)
Q Consensus 118 ~~~DlVlsD~~~ 129 (249)
+.+|+|+.+...
T Consensus 72 g~~d~li~~ag~ 83 (270)
T PRK06179 72 GRIDVLVNNAGV 83 (270)
T ss_pred CCCCEEEECCCC
Confidence 469999998754
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=89.50 E-value=5.3 Score=33.93 Aligned_cols=127 Identities=21% Similarity=0.231 Sum_probs=62.3
Q ss_pred cchhhhhhHHhhhhhcCcc--cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------
Q 025715 21 WRARSAFKLLQIDEEFNIF--EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------- 90 (249)
Q Consensus 21 ~~~ra~~KL~ei~~~~~~~--~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------- 90 (249)
|.-|-+..+.| ..+.++ +.+-++-|=|||.|.....+.-.-+. .-..|+|-|+++..
T Consensus 31 FPVRLAsEi~q--R~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~-----------~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 31 FPVRLASEIFQ--RALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR-----------RLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp --HHHHHHHHH--HHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG-----------GEEEEEEEES-HHHHHHHHHHH
T ss_pred ccHHHHHHHHH--HHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH-----------HHHhHhcccCCHHHHHHHHHhh
Confidence 44444433333 333444 33468999999999998876543221 12579999998621
Q ss_pred ------------------------C---------------------CCCceEeecCCCChhhHHHHHHhcCCCcccEEEe
Q 025715 91 ------------------------P---------------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (249)
Q Consensus 91 ------------------------~---------------------~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVls 125 (249)
+ ..-....+.|++++....... .....|+|+.
T Consensus 98 ~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~---~~~~~diViT 174 (246)
T PF11599_consen 98 SLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD---AGFTPDIVIT 174 (246)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH---TT---SEEEE
T ss_pred hhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc---cCCCCCEEEe
Confidence 0 001235678999987655543 2345899999
Q ss_pred CCCC----CCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 126 DGAP----DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 126 D~~~----~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
|.+- .|.|. .+..=....|.....+| |+..+|+.+-++
T Consensus 175 DlPYG~~t~W~g~------~~~~p~~~ml~~l~~vL-p~~sVV~v~~k~ 216 (246)
T PF11599_consen 175 DLPYGEMTSWQGE------GSGGPVAQMLNSLAPVL-PERSVVAVSDKG 216 (246)
T ss_dssp E--CCCSSSTTS---------HHHHHHHHHHHHCCS--TT-EEEEEESS
T ss_pred cCCCcccccccCC------CCCCcHHHHHHHHHhhC-CCCcEEEEecCC
Confidence 9742 23331 11122334566677788 666666544333
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.44 Score=43.12 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.2
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhc
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~ 64 (249)
++....+-+.| .++||+|+|||.-.-++....+
T Consensus 104 ~L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~P 136 (484)
T COG5459 104 ELQKRVPDFAP-QSILDVGAGPGTGLWALNDIWP 136 (484)
T ss_pred HHHHhCCCcCc-chhhccCCCCchhhhhhcccCC
Confidence 44444444444 5799999999986655555443
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.97 E-value=9.9 Score=32.32 Aligned_cols=78 Identities=15% Similarity=-0.006 Sum_probs=52.4
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-C-------CC-CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-------PI-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-~-------~~-~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++ .+++...+++.+.. ...+|+..+++.. . .+ ..+.++..|+++.+..+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE-----------QGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLAS 74 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH-----------CCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHH
Confidence 35789999986 68898888877642 2457887776531 1 11 235678899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... .+.+|+++.+...
T Consensus 75 ~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 75 LADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHHHcCCCcEEEEcccc
Confidence 544321 2579999998753
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.88 E-value=2.5 Score=38.00 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=53.6
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCCC--C--CCce-EeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=.|+ |+..+++.+.... ... +|+++|.++.+. . -+.. .+ |..+.+..+.+.
T Consensus 174 ~~~g~~VlV~G~--g~vG~~a~~~ak~-----------~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i--~~~~~~~~~~i~ 238 (358)
T TIGR03451 174 VKRGDSVAVIGC--GGVGDAAIAGAAL-----------AGASKIIAVDIDDRKLEWAREFGATHTV--NSSGTDPVEAIR 238 (358)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEEcCCHHHHHHHHHcCCceEE--cCCCcCHHHHHH
Confidence 467899998875 6666654432210 123 589998876431 0 1221 12 223333334444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+- +.|. . ..+..+.+.|++||++++.
T Consensus 239 ~~~~~~g~d~vid-----~~g~---~---------~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 239 ALTGGFGADVVID-----AVGR---P---------ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HHhCCCCCCEEEE-----CCCC---H---------HHHHHHHHHhccCCEEEEE
Confidence 4334456999883 2332 1 2355677899999999874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.71 Score=38.16 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=30.0
Q ss_pred ccEEEeCCCCCCCCC-------C-CcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 120 ADLVVCDGAPDVTGL-------H-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~-------~-~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+|+|+.|++....-. . +.+...-...+...+.++.++|||||.+++-+-
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 589999986443221 0 111223345567789999999999999998554
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.2 Score=33.46 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=54.2
Q ss_pred ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 53 GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 53 G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
|.++..+++.++ .+|+++|.++.+. . -|...+ -|..+.+..+++.+...+..+|+|+-
T Consensus 3 G~~a~q~ak~~G--------------~~vi~~~~~~~k~~~~~~~Ga~~~-~~~~~~~~~~~i~~~~~~~~~d~vid--- 64 (130)
T PF00107_consen 3 GLMAIQLAKAMG--------------AKVIATDRSEEKLELAKELGADHV-IDYSDDDFVEQIRELTGGRGVDVVID--- 64 (130)
T ss_dssp HHHHHHHHHHTT--------------SEEEEEESSHHHHHHHHHTTESEE-EETTTSSHHHHHHHHTTTSSEEEEEE---
T ss_pred HHHHHHHHHHcC--------------CEEEEEECCHHHHHHHHhhccccc-ccccccccccccccccccccceEEEE---
Confidence 556666777664 7999999987431 1 122111 23333335566666656568999984
Q ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 129 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 129 ~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+.|. ...+..+..+|+++|++++--..+
T Consensus 65 --~~g~------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 65 --CVGS------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --SSSS------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --ecCc------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 3331 135778899999999999854433
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.8 Score=38.09 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=60.8
Q ss_pred CeEEEEcCCCChHHHHHHH-HhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------------CCCceEeecCCCChhhH
Q 025715 43 KRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~-~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------------~~~v~~~~gDi~~~~~~ 108 (249)
.+|+-+|+||=-+|..+.. +.+ .+..|+++|+++.+. -.+++++++|+.+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~------------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~- 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG------------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY- 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT------------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhC------------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-
Confidence 5999999999999987554 332 347899999998430 1467899999876431
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC---HHHHHHHHhcCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD---TSLLYCQLKLFFP 185 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~---~~~l~~~l~~~f~ 185 (249)
.-..||+|+--.- +.... .+. ..++....+..+||..+++....+-+ +..+-..-.+-|+
T Consensus 189 -------dl~~~DvV~lAal--Vg~~~-e~K-------~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~ 251 (276)
T PF03059_consen 189 -------DLKEYDVVFLAAL--VGMDA-EPK-------EEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFE 251 (276)
T ss_dssp -------G----SEEEE-TT---S-----SH-------HHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEE
T ss_pred -------ccccCCEEEEhhh--ccccc-chH-------HHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeE
Confidence 1247999976431 11110 111 24677778899999999987543321 1111100012477
Q ss_pred eeEEecCCC
Q 025715 186 VVTFAKPKS 194 (249)
Q Consensus 186 ~v~~~kP~~ 194 (249)
....++|..
T Consensus 252 ~~~~~hP~~ 260 (276)
T PF03059_consen 252 VLAVVHPTD 260 (276)
T ss_dssp EEEEE---T
T ss_pred EEEEECCCC
Confidence 777788864
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.6 Score=38.02 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=52.1
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------C---CCceE
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I---EGVIQ 97 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~---~~v~~ 97 (249)
|+...+..+++.+...++++|||.|..|.++++.+... ..+...++.||....+. . +.++-
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~--------~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R 77 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED--------KPSNSRFVLIDRASNRHKADNKIRKDESEPKFER 77 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc--------ccCCccEEEEecCcccccchhhhhccCCCCceEE
Confidence 67778888888888999999999999999999877421 01246888999965331 1 23566
Q ss_pred eecCCCChh
Q 025715 98 VQGDITNAR 106 (249)
Q Consensus 98 ~~gDi~~~~ 106 (249)
+..||.+..
T Consensus 78 ~riDI~dl~ 86 (259)
T PF05206_consen 78 LRIDIKDLD 86 (259)
T ss_pred EEEEeeccc
Confidence 778888865
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.00 E-value=18 Score=30.76 Aligned_cols=77 Identities=14% Similarity=-0.025 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC--C-------CC--CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PI--EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~--~-------~~--~~v~~~~gDi~~~~~~ 108 (249)
.++++|=.|+++ ++....+++.+.. ...+|+.++.+.- . .+ .++..++.|+++.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 74 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN-----------AGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEI 74 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHH
Confidence 467899999984 8899988887752 2457777765421 0 11 2466788999998766
Q ss_pred HHHHHhcC--CCcccEEEeCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~ 128 (249)
+.+.+.+. -+++|+++.+..
T Consensus 75 ~~~~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 75 TACFETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHHHHhCCCccEEEECcc
Confidence 55544332 157999998864
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=8.1 Score=33.97 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.+.+||=.| |+|+...++++.+.. .+..|+.++.++.. .+.++.++.+|+++.+..+.+.+.
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~-----------~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQ-----------AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHH
Confidence 356888888 457888888776642 23588888877532 134577889999998766555443
Q ss_pred cC--CCcccEEEeCCCC
Q 025715 115 FD--GCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~~ 129 (249)
+. .+.+|+|+.+...
T Consensus 93 ~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 93 FLDSGRRIDILINNAGV 109 (315)
T ss_pred HHhcCCCCCEEEECCCC
Confidence 32 2579999998753
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=86.61 E-value=14 Score=32.72 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC--CCceEeecCCCChhhHHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~--~~v~~~~gDi~~~~~~~~i~~ 113 (249)
|++||=.|+ +|+...++++.+-.. +...+|+++|.+... .. .++.++.+|+++.+.+....
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~---------g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~- 72 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLEN---------YNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRAL- 72 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHh---------CCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHH-
Confidence 567887775 688888888766410 012478888766432 11 35778899999987554433
Q ss_pred hcCCCcccEEEeCCCC
Q 025715 114 HFDGCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~ 129 (249)
. .+|.|+...+.
T Consensus 73 --~--~iD~Vih~Ag~ 84 (324)
T TIGR03589 73 --R--GVDYVVHAAAL 84 (324)
T ss_pred --h--cCCEEEECccc
Confidence 2 48999987653
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.43 E-value=6.3 Score=37.19 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=69.4
Q ss_pred cCCC-eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhH
Q 025715 40 EGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~-~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~ 108 (249)
++-. ++|-+|||-=-++..+-+.. --.|+-+|+++.. ..+...+...|++...
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G--------------~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~-- 109 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG--------------FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV-- 109 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC--------------CCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc--
Confidence 5555 99999999987776665432 2478899999842 1234567788887753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
|.+++||+|+.=|..+..-......+.. .....-+....++|++||+++.-++
T Consensus 110 ------fedESFdiVIdkGtlDal~~de~a~~~~-~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 110 ------FEDESFDIVIDKGTLDALFEDEDALLNT-AHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ------CCCcceeEEEecCccccccCCchhhhhh-HHhhHHHhhHHHHhccCCEEEEEEe
Confidence 5778999999877654321111111111 2234456788899999999886555
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=86.25 E-value=4.3 Score=31.33 Aligned_cols=94 Identities=22% Similarity=0.261 Sum_probs=48.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
..+++++|-|-=--....++..+ ..|+++|+.+.....|+.++.-|++++... + . ...|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G--------------~dV~~tDi~~~~a~~g~~~v~DDif~P~l~--i---Y--~~a~ 72 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERG--------------FDVIATDINPRKAPEGVNFVVDDIFNPNLE--I---Y--EGAD 72 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS---------------EEEEE-SS-S----STTEE---SSS--HH--H---H--TTEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcC--------------CcEEEEECcccccccCcceeeecccCCCHH--H---h--cCCc
Confidence 34999999765443333333333 699999999984447899999999997631 1 1 3699
Q ss_pred EEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 122 lVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+|.|-=+|. +|+..++++|.++ |..|+++.+..+.
T Consensus 73 lIYSiRPP~-------------El~~~il~lA~~v---~adlii~pL~~e~ 107 (127)
T PF03686_consen 73 LIYSIRPPP-------------ELQPPILELAKKV---GADLIIRPLGGES 107 (127)
T ss_dssp EEEEES--T-------------TSHHHHHHHHHHH---T-EEEEE-BTTB-
T ss_pred EEEEeCCCh-------------HHhHHHHHHHHHh---CCCEEEECCCCCC
Confidence 999853221 1233455555543 7778887776554
|
; PDB: 2K4M_A. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.65 E-value=12 Score=32.09 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhc--
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF-- 115 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~-- 115 (249)
+.+||=.|+ +|+....+++.+.. .+..|++++.++... -.++.++.+|+++.+..+.+.+..
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~-----------~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQS-----------DGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 457787775 68888888877642 246899888876321 135778899999987655544332
Q ss_pred -CCCcccEEEeCCCC
Q 025715 116 -DGCKADLVVCDGAP 129 (249)
Q Consensus 116 -~~~~~DlVlsD~~~ 129 (249)
..+.+|+|+.+...
T Consensus 72 ~~~g~id~li~~Ag~ 86 (277)
T PRK05993 72 LSGGRLDALFNNGAY 86 (277)
T ss_pred HcCCCccEEEECCCc
Confidence 12479999998643
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=85.59 E-value=22 Score=31.71 Aligned_cols=73 Identities=22% Similarity=0.144 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C---CCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~---~~v~~~~gDi~~~~~~~~i 111 (249)
.+++||=.| |+|....++++.+-. ...+|+++|..+... + .++.++.+|+++.+....+
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLE-----------LGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKA 70 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHH-----------CCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHH
Confidence 357888877 678888888776642 235899988765321 1 2466788999997755444
Q ss_pred HHhcCCCcccEEEeCCC
Q 025715 112 IRHFDGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~ 128 (249)
. ....+|.|+...+
T Consensus 71 ~---~~~~~d~vih~A~ 84 (349)
T TIGR02622 71 I---AEFKPEIVFHLAA 84 (349)
T ss_pred H---hhcCCCEEEECCc
Confidence 3 3335899987765
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=6.6 Score=32.84 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------C----CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------~----~~v~~~~gDi~~~~~~~~ 110 (249)
+.++|=.|+ +|+....+++.+.. .+..|++++.+.... + .++.++.+|+++.+....
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAG-----------AGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 467888884 56778877776531 235788877654211 1 245678899999876554
Q ss_pred HHHhcC--CCcccEEEeCCC
Q 025715 111 VIRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~ 128 (249)
+.+... -+.+|.|+.+..
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag 93 (248)
T PRK07806 74 LMDTAREEFGGLDALVLNAS 93 (248)
T ss_pred HHHHHHHhCCCCcEEEECCC
Confidence 443221 136899888764
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.33 E-value=5.3 Score=33.98 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=58.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC-----CC-----CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-----MA-----PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~-----~~-----~~~~v~~~~gDi~~~~~~~ 109 (249)
.+|.+||.+|-|=|.....+-++-+ .-++ -++-.| |+ .-.+|..+.|-..+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-------------~~H~-IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv---- 161 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-------------DEHW-IIEAHPDVLKRMRDWGWREKENVIILEGRWEDV---- 161 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-------------cceE-EEecCHHHHHHHHhcccccccceEEEecchHhh----
Confidence 5788999999999987777765432 2332 234443 11 124676666644331
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...+.++.||=|+-|.-- ...+-++.....+.++|||+|.|-.
T Consensus 162 --l~~L~d~~FDGI~yDTy~-----------e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 162 --LNTLPDKHFDGIYYDTYS-----------ELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred --hccccccCcceeEeechh-----------hHHHHHHHHHHHHhhhcCCCceEEE
Confidence 224566789999987521 0122234456678999999998765
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.26 E-value=1.2 Score=39.92 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=44.0
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+++||+||-||++..+... + --.+.++|+++.+. .+...++.+|+..... +.+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-------------f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~-----~~~~ 64 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-------------FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDG-----EALR 64 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-------------CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcCh-----hhcc
Confidence 68999999999999766543 2 13677999998642 2323456677765432 1122
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
...+|+++.-++|
T Consensus 65 ~~~~DvligGpPC 77 (328)
T COG0270 65 KSDVDVLIGGPPC 77 (328)
T ss_pred ccCCCEEEeCCCC
Confidence 2279999976543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=85.15 E-value=8.2 Score=33.74 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=51.5
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
++++.+||..|+|+ |..+..+++..+ ..|++++.++... ..++..+..+ .+......+ .
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--------------~~V~~~~~s~~~~~~~~~~g~~~~~~~-~~~~~~~~~-~ 226 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--------------AAVIAVDIKEEKLELAKELGADEVLNS-LDDSPKDKK-A 226 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--------------CEEEEEcCCHHHHHHHHHhCCCEEEcC-CCcCHHHHH-H
Confidence 56788999976432 333334455543 5688888765321 0122222111 111111222 2
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+..+|+|+... |. . ..+..+.+.|+++|+++..
T Consensus 227 ~~~~~~~D~vid~~-----g~---~---------~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGLGGGFDVIFDFV-----GT---Q---------PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HhcCCCceEEEECC-----CC---H---------HHHHHHHHHhhcCCEEEEE
Confidence 33456799988532 11 0 2456778999999999874
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=16 Score=30.15 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.+.+||=.|++ |+....+++.+.. .+..|++++.++.. ...++.++.+|+++.+....+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALK-----------EGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNV 71 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHH
Confidence 35688888874 7788888776641 24589998887632 112567889999997765544
Q ss_pred HHhcC--CCcccEEEeCCCCCCC-CCCCcCHHH-HHH----HHHHHHHHHHHhccCCCEEEEEE
Q 025715 112 IRHFD--GCKADLVVCDGAPDVT-GLHDMDEFV-QSQ----LILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~~~~-g~~~~~~~~-~~~----l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+... -+.+|.++........ ...+.+... ..+ -....+......++++|.+++..
T Consensus 72 ~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 72 IEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 33221 1357888877542211 111111000 001 01223445556677888887643
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.72 E-value=0.53 Score=39.50 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=28.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
-.+.|+|||-||+...++...+ +..|+|.+|.-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-------------dtLiLGmEIR~ 94 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-------------DTLILGMEIRD 94 (249)
T ss_pred ceEEeeccCccchhhhccccCc-------------cceeeeehhhH
Confidence 4799999999999998888774 68899999864
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.48 E-value=20 Score=28.94 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=60.4
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEE
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlV 123 (249)
++|=.|+ .|+....+++.+.. . .+|+.++.++. .+..|+++.+..+.+.+.+ +.+|.|
T Consensus 2 ~vlItGa-s~giG~~la~~l~~-----------~-~~vi~~~r~~~-------~~~~D~~~~~~~~~~~~~~--~~id~l 59 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSK-----------R-HEVITAGRSSG-------DVQVDITDPASIRALFEKV--GKVDAV 59 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHh-----------c-CcEEEEecCCC-------ceEecCCChHHHHHHHHhc--CCCCEE
Confidence 5677774 67788888877752 2 57888876542 3577999988777666554 369999
Q ss_pred EeCCCCCCCC-CCCcCHHHH---HH--H--HHHHHHHHHHhccCCCEEEEE
Q 025715 124 VCDGAPDVTG-LHDMDEFVQ---SQ--L--ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 124 lsD~~~~~~g-~~~~~~~~~---~~--l--~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+......+ ..+.+.... .. + .......+...++++|.+++.
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 110 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLT 110 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 9887532111 111121111 11 1 123445556667788988764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=25 Score=30.17 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=50.8
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC--C-------CCCCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~--~-------~~~~v~~~~gDi~~~~~~~~i 111 (249)
++++|=.|++ .++....+++.+.. .+.+|+.++.+.. . .+..+..++.|+++.+..+.+
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~-----------~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRA-----------AGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAV 78 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHH
Confidence 4688888987 58999998887752 2457766654321 0 122345678999998876665
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+. -+.+|+++.+...
T Consensus 79 ~~~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHHHHhcCCCcEEEECCcc
Confidence 54432 1479999999753
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=83.99 E-value=10 Score=28.86 Aligned_cols=95 Identities=26% Similarity=0.263 Sum_probs=60.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
.+| +|+++|.| .+...+ +++.+ .+..|+++|+++...-.|+.++.-|++++..- +- +.
T Consensus 13 ~~g-kVvEVGiG--~~~~VA-~~L~e-----------~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~------iY-~~ 70 (129)
T COG1255 13 ARG-KVVEVGIG--FFLDVA-KRLAE-----------RGFDVLATDINEKTAPEGLRFVVDDITNPNIS------IY-EG 70 (129)
T ss_pred cCC-cEEEEccc--hHHHHH-HHHHH-----------cCCcEEEEecccccCcccceEEEccCCCccHH------Hh-hC
Confidence 344 99999864 555443 34431 23689999999975447899999999998631 11 45
Q ss_pred ccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.|+|.|--+| .+|+..++..|..+ |-.+.++...++.
T Consensus 71 A~lIYSiRpp-------------pEl~~~ildva~aV---ga~l~I~pL~Ge~ 107 (129)
T COG1255 71 ADLIYSIRPP-------------PELQSAILDVAKAV---GAPLYIKPLTGEP 107 (129)
T ss_pred ccceeecCCC-------------HHHHHHHHHHHHhh---CCCEEEEecCCCC
Confidence 8999985322 12344455555432 5567777665544
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.97 E-value=26 Score=30.64 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~~gDi~~~~~~ 108 (249)
.+++||=.| |+|....++++++-. .+..|++++.++... ..+++++.+|+++.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF-----------RGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH-----------CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHH
Confidence 467888888 678888888876642 235676665554210 12577889999997654
Q ss_pred HHHHHhcCCCcccEEEeCCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~ 129 (249)
..+. . .+|.|+...+.
T Consensus 72 ~~~~---~--~~d~vih~A~~ 87 (325)
T PLN02989 72 ELAI---D--GCETVFHTASP 87 (325)
T ss_pred HHHH---c--CCCEEEEeCCC
Confidence 4432 2 48999888753
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=83.87 E-value=1.1 Score=40.07 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=41.4
Q ss_pred EEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 45 vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
|+||.||.||++..+.+. + --.+.++|+++.+. .++ ..+.+|+.+... ..+ .
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-------------~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~-----~~~--~ 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-------------FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISP-----SDI--P 58 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-------------CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhh-----hhC--C
Confidence 689999999999888643 2 12466899987531 334 456788877542 112 3
Q ss_pred cccEEEeCCC
Q 025715 119 KADLVVCDGA 128 (249)
Q Consensus 119 ~~DlVlsD~~ 128 (249)
.+|+++.-.+
T Consensus 59 ~~dvl~gg~P 68 (315)
T TIGR00675 59 DFDILLGGFP 68 (315)
T ss_pred CcCEEEecCC
Confidence 5899997654
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=83.40 E-value=2 Score=33.40 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=34.2
Q ss_pred hhhhhcCcc-cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 31 QIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 31 ei~~~~~~~-~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
|-...|+.+ -.+.+|+|+|++-|.-+.+.+.+. ..+|++++..+.
T Consensus 17 ey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~G--------------AK~Vva~E~~~k 62 (156)
T PHA01634 17 EYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRG--------------ASFVVQYEKEEK 62 (156)
T ss_pred HHHHHhhheeecCCEEEEecCCccchhhHHhhcC--------------ccEEEEeccCHH
Confidence 334445544 467899999999999998887653 379999999874
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=83.25 E-value=8.8 Score=34.60 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=51.9
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i 111 (249)
+++|.+||=.|+ |+....+ ++..+ ..+|+++|.++.+. --++..+ -|..+.+..+.+
T Consensus 189 i~~g~~VlV~G~--G~vG~~a~~lak~~G-------------~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~~~~~~~~~i 252 (371)
T cd08281 189 VRPGQSVAVVGL--GGVGLSALLGAVAAG-------------ASQVVAVDLNEDKLALARELGATAT-VNAGDPNAVEQV 252 (371)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCcEEEEcCCHHHHHHHHHcCCceE-eCCCchhHHHHH
Confidence 467888888885 5555544 33333 12689998876431 0122111 122222333344
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+... +.+|+|+- +.|. . ..+..+.+.|+++|++++-
T Consensus 253 ~~~~~-~g~d~vid-----~~G~---~---------~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 253 RELTG-GGVDYAFE-----MAGS---V---------PALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHhC-CCCCEEEE-----CCCC---h---------HHHHHHHHHHhcCCEEEEE
Confidence 43333 36999984 2221 0 2456678899999999864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.91 E-value=11 Score=31.13 Aligned_cols=77 Identities=6% Similarity=0.039 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC---CCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~---~~v~~~~gDi~~~~~~~~i 111 (249)
.+.++|=.| |+|+....+++++-. .+.+|++++.++.. .+ .++.++.+|+.+.......
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLA-----------EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHH-----------CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHH
Confidence 356888888 588888888776641 23589999887632 11 3577889999987765444
Q ss_pred HHhcC--CCcccEEEeCCCC
Q 025715 112 IRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+. .+.+|.|+.....
T Consensus 73 ~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 73 VDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 33221 1368999987643
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.77 E-value=21 Score=29.11 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=60.5
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCC--CC--hhhHHHHHHhcCCCc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDI--TN--ARTAEVVIRHFDGCK 119 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi--~~--~~~~~~i~~~~~~~~ 119 (249)
||+=-| |-|.......+.+.. .+.-|..+|+++....+--..+.+|- +. .....+.-+.+.+++
T Consensus 5 rVivYG-GkGALGSacv~~Fka-----------nnywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gek 72 (236)
T KOG4022|consen 5 RVIVYG-GKGALGSACVEFFKA-----------NNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEK 72 (236)
T ss_pred eEEEEc-CcchHhHHHHHHHHh-----------cCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccc
Confidence 444333 788888887776652 24578889998865322111222322 11 122344556678899
Q ss_pred ccEEEeCCCCCCCCCC-CcCHHHHHHHH--------HHHHHHHHHhccCCCEEEEE
Q 025715 120 ADLVVCDGAPDVTGLH-DMDEFVQSQLI--------LAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~~-~~~~~~~~~l~--------~~~l~~a~~~Lk~gG~lv~k 166 (249)
+|.|+|-..-...|.- ..+-....+|. .....+|...|||||.|.+.
T Consensus 73 vDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~Lt 128 (236)
T KOG4022|consen 73 VDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLT 128 (236)
T ss_pred cceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeec
Confidence 9999997532222221 11111111111 11245677899999998874
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.74 E-value=27 Score=30.01 Aligned_cols=78 Identities=14% Similarity=0.047 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. ++....+++.+.. ....|+.++.+... .......++.|+++.+..+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~ 74 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAA-----------QGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDA 74 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-----------CCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHH
Confidence 357899999886 4788888777642 24577777765310 01123457899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+.+|+++.+...
T Consensus 75 ~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 75 VFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHHHHhCCCCEEEECCcc
Confidence 544322 1579999998753
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=30 Score=29.58 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. +|....+++.+.. ....|+.++.+... ....+..+..|+++.+..+.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~-----------~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 73 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHR-----------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDA 73 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHH-----------CCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHH
Confidence 357888899987 4888888777642 23577777665310 12345568899999877665
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+++|+++.+...
T Consensus 74 ~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 74 MFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHHHHhhcCCCCEEEECCcc
Confidence 544322 1469999999753
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=82.33 E-value=30 Score=29.38 Aligned_cols=78 Identities=15% Similarity=0.038 Sum_probs=50.3
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~~ 107 (249)
.++++|=.|++ ++++...+++.+.. ...+|+..+.+... ....+..++.|+.+.+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 73 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA-----------AGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQ 73 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHH
Confidence 46788999985 68999998887752 23566655433210 01235577899999877
Q ss_pred HHHHHHhcC--CCcccEEEeCCCC
Q 025715 108 AEVVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 108 ~~~i~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+.+.+. -+.+|+++.+...
T Consensus 74 v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 74 IEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEEcccc
Confidence 655444332 1479999998753
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=82.01 E-value=1.9 Score=32.45 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=17.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSR 61 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~ 61 (249)
++...++|||||.|-..-.|..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~ 78 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS 78 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh
Confidence 3456899999999988766654
|
; GO: 0008168 methyltransferase activity |
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.78 E-value=31 Score=29.27 Aligned_cols=76 Identities=14% Similarity=0.014 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCC-hHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----CC----CCCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----AP----IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG-~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----~~----~~~v~~~~gDi~~~~~~~~i 111 (249)
|+.+|=-|++.| +....+++.+.. ...+|+..+.++. .. ......++.|+++.+..+.+
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~-----------~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~ 76 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKK-----------HGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNL 76 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHH-----------cCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHH
Confidence 567888888775 677777666541 2357777776531 00 12233468899998766555
Q ss_pred HHhcC--CCcccEEEeCCC
Q 025715 112 IRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~ 128 (249)
.+.+. -+.+|+++.+..
T Consensus 77 ~~~~~~~~g~iDilVnnag 95 (260)
T PRK06603 77 FDDIKEKWGSFDFLLHGMA 95 (260)
T ss_pred HHHHHHHcCCccEEEEccc
Confidence 44321 157999998864
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.55 E-value=32 Score=29.65 Aligned_cols=78 Identities=12% Similarity=0.017 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----C----CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----~----~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. +|....+++++.. .+..|+..+++.. . .+.+-..++.|+++.+..+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~-----------~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE-----------QGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKS 72 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHH
Confidence 357888889874 6888888887652 2457777777631 0 11111467899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+. .+++|+++.+...
T Consensus 73 ~~~~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 544332 2579999998753
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=3.1 Score=39.34 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C---CCceEeecCCCChh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---EGVIQVQGDITNAR 106 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~---~~v~~~~gDi~~~~ 106 (249)
..+++||.||.||++..+-.. + --.|.++|+++.+. . ++...+.+||++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-------------~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-------------GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-------------CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc
Confidence 569999999999999888543 3 13567899987541 1 33445667887653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=27 Score=29.35 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=48.2
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC--CCceEeecCCCChhhHHHHHHhc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~--~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
++|=.|+ +|+....+++.+.. ....|+.++.++.. .+ .++.++++|+++.+....+....
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAA-----------EGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4666664 57778877776642 23588888876532 12 25778899999977655544332
Q ss_pred C---CCcccEEEeCCCC
Q 025715 116 D---GCKADLVVCDGAP 129 (249)
Q Consensus 116 ~---~~~~DlVlsD~~~ 129 (249)
. .+++|.|+++...
T Consensus 71 ~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHcCCCCCEEEECCCC
Confidence 1 3579999988653
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.02 E-value=33 Score=29.02 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC--CCc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~--~~~ 119 (249)
|+++|=.|+ .|+....+++++.. .+.+|+.++.++.. ..++.++.+|+++.+....+.+.+. .+.
T Consensus 6 gk~vlItGa-s~gIG~~ia~~l~~-----------~G~~Vi~~~r~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 6 DKVAIVTGG-SQGIGKAVVNRLKE-----------EGSNVINFDIKEPS-YNDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----------CCCeEEEEeCCccc-cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 568888885 67777777776642 24688888877543 2357788999999876554443321 146
Q ss_pred ccEEEeCCCC
Q 025715 120 ADLVVCDGAP 129 (249)
Q Consensus 120 ~DlVlsD~~~ 129 (249)
+|.|+.+...
T Consensus 73 id~li~~Ag~ 82 (258)
T PRK06398 73 IDILVNNAGI 82 (258)
T ss_pred CCEEEECCCC
Confidence 9999998643
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.53 E-value=34 Score=28.92 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+.++|=.| |+|+....+++.+.. .+..|+.+|.++.. .+ .++.++++|+++.+....+.+.
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVA-----------AGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 46777777 456777777776642 24688888887632 11 2467889999998765544332
Q ss_pred cC--CCcccEEEeCCC
Q 025715 115 FD--GCKADLVVCDGA 128 (249)
Q Consensus 115 ~~--~~~~DlVlsD~~ 128 (249)
.. -+.+|.++.+..
T Consensus 74 ~~~~~g~id~lv~~ag 89 (261)
T PRK08265 74 VVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHhCCCCEEEECCC
Confidence 21 146899998864
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.09 E-value=39 Score=29.31 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------C----CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------~----~~v~~~~gDi~~~~~~~~ 110 (249)
++++|=.|+ .|+....+++++.. ...+|+.++.++... + .++.++.+|+++.+....
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~-----------~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAK-----------EGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 568888885 66667777766641 236788887764221 1 236678899999876555
Q ss_pred HHHhcC--CCcccEEEeCCCCCC--CCCCCcCHHH---HHH----HHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFD--GCKADLVVCDGAPDV--TGLHDMDEFV---QSQ----LILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~~~--~g~~~~~~~~---~~~----l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+... .+.+|.|+.+..... ....+.+... ..+ -....+..+...++++|.++..
T Consensus 114 ~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 114 AVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 443221 146899998764211 1111122111 111 1133444555566778888763
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=80.01 E-value=35 Score=30.17 Aligned_cols=73 Identities=18% Similarity=0.038 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----C---C--------CCceEeecCCCChh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----P---I--------EGVIQVQGDITNAR 106 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~---~--------~~v~~~~gDi~~~~ 106 (249)
+++||=.| |+|....++.+.+.. .+.+|++++..+.. . + .++.++.+|+++.+
T Consensus 6 ~~~vlVTG-atGfiG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 73 (340)
T PLN02653 6 RKVALITG-ITGQDGSYLTEFLLS-----------KGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDAS 73 (340)
T ss_pred CCEEEEEC-CCCccHHHHHHHHHH-----------CCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHH
Confidence 46777777 578888888776642 23588888765421 0 1 24678899999976
Q ss_pred hHHHHHHhcCCCcccEEEeCCCC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
......+. ..+|+|+..++.
T Consensus 74 ~~~~~~~~---~~~d~Vih~A~~ 93 (340)
T PLN02653 74 SLRRWLDD---IKPDEVYNLAAQ 93 (340)
T ss_pred HHHHHHHH---cCCCEEEECCcc
Confidence 55444432 248999888754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 249 | ||||
| 2nyu_A | 196 | Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) | 1e-24 | ||
| 1eiz_A | 180 | Ftsj Rna Methyltransferase Complexed With S- Adenos | 3e-19 | ||
| 2plw_A | 201 | Crystal Structure Of A Ribosomal Rna Methyltransfer | 3e-17 | ||
| 3dou_A | 191 | Crystal Structure Of Methyltransferase Involved In | 1e-10 |
| >pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein In Complex With S-Adenosylmethionine Length = 196 | Back alignment and structure |
|
| >pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S- Adenosylmethionine Length = 180 | Back alignment and structure |
|
| >pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase, Putative, From Plasmodium Falciparum (Pf13_0052) Length = 201 | Back alignment and structure |
|
| >pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell Division From Thermoplasma Volcanicum Gss1 Length = 191 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 3e-98
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 5/199 (2%)
Query: 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80
+R+RSAFKLL+++E I RV+D AAPG+WSQV +K+
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPV----GF 57
Query: 81 IVAIDLQPMAPIEGVIQ-VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
++ +DL + P+EG D+T+ RT++ ++ G +AD+++ D AP+ TG D+D
Sbjct: 58 VLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDH 117
Query: 140 FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSS 199
L L L+V +L+ GG F+ K + G + L +L F V KP++SR S
Sbjct: 118 DRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKES 177
Query: 200 IEAFAVCENYFPPEGFNPK 218
E + + Y +G +
Sbjct: 178 SEVYFLATQYHGRKGTVKQ 196
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 6e-93
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 12/192 (6%)
Query: 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79
G R+R+ FKL +I + +F+ VVDL AAPG WSQ + ++ G
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQI------------GGKG 48
Query: 80 LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
I+A DL PM PI GV +QGD + + ++ K +V+ D AP+++G +D
Sbjct: 49 RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDI 108
Query: 140 FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSS 199
L+ L + VL GG F+ K+F+G+ +++ F V KP SSR S
Sbjct: 109 PRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARS 168
Query: 200 IEAFAVCENYFP 211
E + V P
Sbjct: 169 REVYIVATGRKP 180
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 5e-90
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 18/197 (9%)
Query: 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL 78
R+R+AFKL + + + + V+++ ++PG W+QVL+
Sbjct: 3 LQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLA--------------- 47
Query: 79 PLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD---GCKADLVVCDGAPDVTGLH 135
I++IDLQ M I GV ++ DI + + R K D VV D V+G+
Sbjct: 48 RKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIP 107
Query: 136 DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSS 195
D V Q+ + + L+ GG + K F+G T+ + F +KP +S
Sbjct: 108 SRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPAS 167
Query: 196 RNSSIEAFAVCENYFPP 212
R SS E + + +
Sbjct: 168 RGSSSEIYIMFFGFKAE 184
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} Length = 201 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 1e-86
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 28/210 (13%)
Query: 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80
+R+R+A+KL+++D ++ + K ++D+ PGSW QV+ + + ++
Sbjct: 2 YRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTK-----NYKNK------ 50
Query: 81 IVAIDLQPMAPIEGVIQVQGDIT-----------------NARTAEVVIRHFDGCKADLV 123
I+ ID + M PI V +QG+I N + K D++
Sbjct: 51 IIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDII 110
Query: 124 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183
+ D A G D +L L+ + + GG +I K++ G T+ L LK
Sbjct: 111 LSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM 170
Query: 184 FPVVTFAKPKSSRNSSIEAFAVCENYFPPE 213
F +V KPK+SRN S E + VC+N+ +
Sbjct: 171 FQLVHTTKPKASRNESREIYLVCKNFLGRK 200
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 7e-45
Identities = 40/229 (17%), Positives = 68/229 (29%), Gaps = 22/229 (9%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
+R + K +R KL E + RV+DL G W + + +
Sbjct: 42 RRHLAEGKVDTGVAVSRGTAKLRWFHERGYVKLE-GRVIDLGCGRGGWCYYAAAQKEV-- 98
Query: 68 KLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127
G + D V + +I + + R K D ++CD
Sbjct: 99 -------SGVKGFTLGRDGHE--KPMNVQSLGWNIITFKDKTDIHRLEPV-KCDTLLCDI 148
Query: 128 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAKIFRGKDTSLLYC--QLKLFF 184
+ + + + L V L G F K+ +L L+ F
Sbjct: 149 GESSS-----SSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRF 203
Query: 185 PVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 233
P SRNS+ E + V + L+ ++ P G
Sbjct: 204 GGTVIRNPL-SRNSTHEMYYVSGARSNVTFTVNQTSRLLMRRMRRPTGK 251
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Length = 300 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 9e-25
Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 22/201 (10%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
+R + + +R A K+ + E + RV+DL G WS + +
Sbjct: 49 RRYLKEGRTDVGISVSRGAAKIRWLHERGYLRIT-GRVLDLGCGRGGWSYYAAAQ----- 102
Query: 68 KLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127
+ I+ PI + +I + + + +D ++CD
Sbjct: 103 ----KEVMSVKGYTLGIEGH-EKPIHMQT-LGWNIVKFK-DKSNVFTMPTEPSDTLLCDI 155
Query: 128 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI---FRGKDTSLLYCQLKLFF 184
+ ++ + + F K+ + L +L+L F
Sbjct: 156 GESSSN-PLVER--DRTMKVLEN-FERWKHVNTENFCVKVLAPYHPDVIEKL-ERLQLRF 210
Query: 185 PVVTFAKPKSSRNSSIEAFAV 205
P SRNS+ E + +
Sbjct: 211 GGGIVRVP-FSRNSTHEMYYI 230
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* Length = 375 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 6e-10
Identities = 25/137 (18%), Positives = 38/137 (27%), Gaps = 34/137 (24%)
Query: 12 YYRKAKEEGWRARSAFKLLQ-------IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
R +RS KL + DE VDL A PG W+ L ++
Sbjct: 175 IPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR-- 232
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+ ++D PMA V ++ D R
Sbjct: 233 -NMW------------VYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTR--------SNI 271
Query: 121 DLVVCDGAPDVTGLHDM 137
+VCD + +
Sbjct: 272 SWMVCDMVEKPAKVAAL 288
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* Length = 305 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 25/186 (13%)
Query: 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVA 83
R + KL E + +VVDL G WS Y + +G L
Sbjct: 66 RGSAKLRWFVERNLVTPE-GKVVDLGCGRGGWSY------YCGGLKNVREVKG---LTKG 115
Query: 84 IDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQS 143
PI + G + V + + D ++CD G + V++
Sbjct: 116 GPGH-EEPI--PMSTYGWNLVRLQSGVDVFFIPPERCDTLLCD-----IGESSPNPTVEA 167
Query: 144 QLILAGLTVVTHVLKEGGKFIAKI---FRGKDT-SLLYCQLKLFFPVVTFAKPKSSRNSS 199
L L +V + L +F K+ + + Q K +V + SRNS+
Sbjct: 168 GRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALV---RNPLSRNST 224
Query: 200 IEAFAV 205
E + V
Sbjct: 225 HEMYWV 230
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 100.0 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 100.0 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 100.0 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 100.0 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 100.0 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 100.0 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.98 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 99.95 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.94 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.94 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.94 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.93 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 99.93 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 99.92 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.85 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 99.71 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 99.68 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.56 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.55 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.52 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.5 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.46 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.46 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.46 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.44 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.42 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.39 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.39 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.39 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.37 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.37 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.36 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.35 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.35 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.35 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.33 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.33 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.33 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.32 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.31 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.31 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.31 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.3 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.29 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.29 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.29 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.28 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.27 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.27 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.26 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.25 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.24 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.24 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.24 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.23 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.23 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.22 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.22 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.21 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.21 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.21 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.21 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.2 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.2 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.2 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.2 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.19 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.19 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.19 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.19 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.19 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.19 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.19 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.19 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.18 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.18 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.18 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.18 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.18 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.17 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.17 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.17 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.16 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.16 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.15 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.15 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.14 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.14 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.14 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.14 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.14 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.14 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.14 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.14 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.14 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.13 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.13 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.13 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.13 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.13 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.13 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.12 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.12 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.12 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.12 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.12 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.12 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.11 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.11 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.11 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.1 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.1 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.1 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.1 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.09 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.09 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.09 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.09 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.09 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.07 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.07 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.07 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.07 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.07 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.07 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.07 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.07 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.07 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.06 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.06 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.06 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.06 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.06 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.06 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.05 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.05 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.05 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.05 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.05 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.04 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.04 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.04 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.04 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.04 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.03 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.03 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.03 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.03 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.03 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.02 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.02 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.02 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.02 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.01 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.01 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.01 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.0 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.0 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.0 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.0 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.0 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.99 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.99 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.99 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.98 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.98 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.98 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.97 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.97 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.97 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.96 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.96 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.96 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.96 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.96 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.95 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.95 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.95 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.95 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.95 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.95 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.94 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.94 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.93 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.93 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.93 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.93 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.92 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.92 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.91 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.9 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.9 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.9 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.9 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.89 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.89 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.88 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.88 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.88 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.87 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.87 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.87 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.85 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.85 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.85 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.85 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.85 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.85 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.83 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.83 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.83 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.82 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.81 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.8 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.79 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.79 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.79 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.76 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.76 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.75 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.75 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.73 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.73 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.72 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.72 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.72 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.72 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.72 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.71 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.71 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.7 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.7 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.69 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.69 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.68 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.68 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.67 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.66 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.65 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.65 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.65 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.65 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.65 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.63 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.62 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.59 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.58 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.55 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.54 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.54 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.54 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.51 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.5 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.5 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.48 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.47 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.42 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.35 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.35 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.34 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.29 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.27 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.22 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.2 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.18 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.15 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.11 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.1 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.09 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.09 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.09 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.07 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.04 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 98.02 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.97 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.95 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.92 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.9 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.83 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 97.8 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 97.8 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.8 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.75 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 97.75 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.69 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.68 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.67 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.58 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.5 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.49 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.48 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.43 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.39 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.38 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.28 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.04 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.89 | |
| 3iyl_W | 1299 | VP1; non-enveloped virus, membrane penetration pro | 96.55 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.0 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.89 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.79 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.76 | |
| 1ej6_A | 1289 | Lambda2; icosahedral, non-equivalence, dsRNA virus | 95.71 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 95.53 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 95.19 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.16 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.98 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.86 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.73 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.61 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.58 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.53 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.45 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.39 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.37 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.24 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.14 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.03 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.91 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.81 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.79 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 93.56 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.47 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.32 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 93.26 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.24 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.14 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.13 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 93.01 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.93 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.9 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.87 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.85 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 92.85 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.8 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.67 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.57 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 92.51 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.44 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 92.25 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 92.23 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.22 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.15 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 92.13 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.84 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.59 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 91.54 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 91.37 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 91.29 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.26 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 91.24 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 91.13 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.96 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 90.85 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 90.83 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 90.78 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.72 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 90.64 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 90.52 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 90.45 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.42 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 90.29 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 90.27 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 90.19 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 90.12 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 90.03 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 89.7 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 89.69 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 89.46 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 89.46 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.45 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.36 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.3 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 89.23 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 89.13 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 89.08 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 88.96 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 88.95 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 88.86 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 88.82 | |
| 1vpt_A | 348 | VP39; RNA CAP, poly(A) polymerase, methyltransfera | 88.78 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 88.38 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 88.15 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.13 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 87.89 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 87.52 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 87.4 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 87.36 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 87.23 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 86.99 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 86.95 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 86.77 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.72 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 86.48 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 86.48 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 86.44 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 86.31 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 86.26 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 86.12 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 86.01 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 85.96 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 85.89 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 85.86 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 85.84 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 85.38 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 85.22 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 85.02 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.01 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 84.98 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 84.89 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 84.79 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 84.73 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 84.46 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 84.41 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 84.4 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.4 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 84.39 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 84.32 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 84.26 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 84.0 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 84.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 83.75 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 83.74 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 83.69 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 83.48 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 83.42 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 83.41 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 83.39 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 83.38 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 83.29 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 83.25 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 82.87 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 82.83 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 82.57 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 82.56 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 82.49 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 82.37 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 82.37 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 82.35 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 82.14 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 81.77 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 81.75 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 81.48 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 81.32 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 81.09 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 81.05 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 80.84 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 80.77 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 80.6 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 80.59 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 80.45 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 80.37 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 80.17 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 80.15 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 80.1 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 80.06 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 80.05 |
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=275.63 Aligned_cols=181 Identities=28% Similarity=0.391 Sum_probs=156.9
Q ss_pred HhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceE
Q 025715 18 EEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQ 97 (249)
Q Consensus 18 ~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~ 97 (249)
++||++||+|||.||+++|+++++|.+|||||||||+|+++++++ + ++|+|+|++++..++++++
T Consensus 2 ~~~yr~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~--------------~~V~gvD~~~~~~~~~v~~ 66 (191)
T 3dou_A 2 SLQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-A--------------RKIISIDLQEMEEIAGVRF 66 (191)
T ss_dssp --CTTSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-C--------------SEEEEEESSCCCCCTTCEE
T ss_pred CCCCCCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-C--------------CcEEEEeccccccCCCeEE
Confidence 689999999999999999999999999999999999999999876 3 7999999999988889999
Q ss_pred eecCCCChhhHHHHHHhcC---CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHH
Q 025715 98 VQGDITNARTAEVVIRHFD---GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~---~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~ 174 (249)
+++|+++......+.+.+. .++||+|+||++++++|.+..++.....++..++..+.++|||||+|++++|.++...
T Consensus 67 ~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~ 146 (191)
T 3dou_A 67 IRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTN 146 (191)
T ss_dssp EECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHH
T ss_pred EEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHH
Confidence 9999999876665555443 1389999999999999888777777788889999999999999999999999999888
Q ss_pred HHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCC
Q 025715 175 LLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE 213 (249)
Q Consensus 175 ~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~ 213 (249)
++...++.+|..|.++||.+||+.|+|+|+||+||+...
T Consensus 147 ~~~~~l~~~F~~v~~~kP~asR~~s~E~y~v~~~~~~~~ 185 (191)
T 3dou_A 147 DFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFKAEG 185 (191)
T ss_dssp HHHHHHGGGEEEEEEECC------CCEEEEEEEEECCC-
T ss_pred HHHHHHHHhcCEEEEECCCCccCCCceEEEEEeeecccc
Confidence 999999999999999999999999999999999999864
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=252.96 Aligned_cols=189 Identities=21% Similarity=0.156 Sum_probs=146.1
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHH--hcCCCCCCCCCCCCCCCeEEEec--CCCCCCC-CC
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK--LYLPAKLSPDSREGDLPLIVAID--LQPMAPI-EG 94 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~--~~~~~~~~~~~~~~~~~~vvavD--i~~~~~~-~~ 94 (249)
+|++||+|||.||++++ +++||++|||||||||+|||+++++ ++. ..+.++|+| +.|+.++ +|
T Consensus 53 ~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~-----------V~G~vig~D~~~~P~~~~~~G 120 (269)
T 2px2_A 53 HPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQE-----------VRGYTKGGPGHEEPMLMQSYG 120 (269)
T ss_dssp CCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEE-----------EEEECCCSTTSCCCCCCCSTT
T ss_pred CcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCC-----------ceeEEEccccccCCCcccCCC
Confidence 59999999999999998 9999999999999999999999987 431 136888999 6666655 78
Q ss_pred ceEe---ec-CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC-EEEEEEec
Q 025715 95 VIQV---QG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG-KFIAKIFR 169 (249)
Q Consensus 95 v~~~---~g-Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG-~lv~k~~~ 169 (249)
+.++ +| |+++. .+..+|+|+|||+|+ +|.+..|+.+++. ++..|.++|+||| .|++|+|+
T Consensus 121 v~~i~~~~G~Df~~~----------~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~----aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 121 WNIVTMKSGVDVFYK----------PSEISDTLLCDIGES-SPSAEIEEQRTLR----ILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp GGGEEEECSCCGGGS----------CCCCCSEEEECCCCC-CSCHHHHHHHHHH----HHHHHHHHHTTCCSEEEEEESC
T ss_pred ceEEEeeccCCccCC----------CCCCCCEEEeCCCCC-CCccHHHHHHHHH----HHHHHHHHhhcCCcEEEEEECC
Confidence 7444 47 99863 346899999999998 8887777766544 8899999999999 99999999
Q ss_pred C--CCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhC-CCCCCCCC
Q 025715 170 G--KDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVG-SPWGGEDQ 236 (249)
Q Consensus 170 ~--~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 236 (249)
+ +.+.+++..+++.|..|.+ +|.+||..|+|+|+||..-....+--......++.-+. ..|.+...
T Consensus 186 g~~~~~~~~l~~lk~~F~~vkv-k~paSR~~S~E~YlVa~~~~n~~~~v~~~s~~l~~r~~~~~~~~~~~ 254 (269)
T 2px2_A 186 PYMPKVIEKLESLQRRFGGGLV-RVPLSRNSNHEMYWVSGASGNIVHAVNMTSQVLIGRMDKKIWKGPKY 254 (269)
T ss_dssp TTSHHHHHHHHHHHHHHCCEEE-CCTTSCTTCCCEEEETTCCSCHHHHHHHHHHHHHHTSSCSSCCCCEE
T ss_pred CCchHHHHHHHHHHHHcCCEEE-ECCCCCCCCccEEEEecccCcHHHHHHHHHHHHHHHhcccccCCCCc
Confidence 6 4455667788889999996 55599999999999997654433222333334455554 34544433
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=246.54 Aligned_cols=182 Identities=21% Similarity=0.184 Sum_probs=146.4
Q ss_pred hccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC---CCCCC--
Q 025715 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP---MAPIE-- 93 (249)
Q Consensus 19 ~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~---~~~~~-- 93 (249)
..|++||+|||.||+++| +++++.+|||||||||+|+++++++.+ ...|+|+|+.. +.+++
T Consensus 69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~g-------------v~sV~GvdvG~d~~~~pi~~~ 134 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKN-------------VKKVMAFTLGVQGHEKPIMRT 134 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTT-------------EEEEEEECCCCTTSCCCCCCC
T ss_pred CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcC-------------CCeeeeEEeccCccccccccc
Confidence 358999999999999999 789999999999999999999997654 35788999964 22222
Q ss_pred --C--ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC--CEEEEEE
Q 025715 94 --G--VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG--GKFIAKI 167 (249)
Q Consensus 94 --~--v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g--G~lv~k~ 167 (249)
+ +.....++.. ..+...++|+|+|||+|+ +|.+..|++.++.| |..|.++|+|| |.||+|+
T Consensus 135 ~~g~~ii~~~~~~dv--------~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~L----L~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 135 TLGWNLIRFKDKTDV--------FNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRV----LNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp BTTGGGEEEECSCCG--------GGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHHHHHHHCCCEEEEEE
T ss_pred cCCCceEEeeCCcch--------hhcCCCCcCEEEecCccC-CCChHHHHHHHHHH----HHHHHHHcCCCCCCcEEEEE
Confidence 2 2222222111 124568999999999999 99887787776655 88999999999 9999999
Q ss_pred ec--CCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhC
Q 025715 168 FR--GKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVG 228 (249)
Q Consensus 168 ~~--~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~ 228 (249)
|+ +++..++++.+++.|+.|.+.|| +||..|+|+|+||.+..+....-+.....++..+.
T Consensus 202 F~pyg~~~~~l~~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r~n~~~~v~~~s~~l~~r~~ 263 (282)
T 3gcz_A 202 LCPYTPLIMEELSRLQLKHGGGLVRVP-LSRNSTHEMYWVSGTRTDVVGTVSNVSRLLTRRML 263 (282)
T ss_dssp SCCCSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCCCCSHHHHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHhcCCEEEEcC-CCcccCcceeEEEecCCCccchHHHHHHHHHHHHh
Confidence 99 78888999999999999999999 99999999999999877776666665555555553
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=227.57 Aligned_cols=182 Identities=30% Similarity=0.500 Sum_probs=150.5
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCC-CCeEEEecCCCCCCCCCceEe
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD-LPLIVAIDLQPMAPIEGVIQV 98 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~-~~~vvavDi~~~~~~~~v~~~ 98 (249)
||++||++||.+++++|++++++.+|||||||||+++.+++++.+ + .++|+|+|++++...++++++
T Consensus 1 ~~~~r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~------------~~~~~v~gvD~s~~~~~~~v~~~ 68 (201)
T 2plw_A 1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTK------------NYKNKIIGIDKKIMDPIPNVYFI 68 (201)
T ss_dssp -CCSTTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTT------------TSCEEEEEEESSCCCCCTTCEEE
T ss_pred CcchHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcC------------CCCceEEEEeCCccCCCCCceEE
Confidence 699999999999999999999999999999999999999998874 2 479999999998777889999
Q ss_pred ecCCCChh-----------------hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC
Q 025715 99 QGDITNAR-----------------TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (249)
Q Consensus 99 ~gDi~~~~-----------------~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG 161 (249)
++|+.+.. ....+.+.+.+.+||+|++|+.+.+.|.+..++....++...++..+.++|||||
T Consensus 69 ~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG 148 (201)
T 2plw_A 69 QGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGG 148 (201)
T ss_dssp ECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred EccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCC
Confidence 99998764 2333333356678999999998777665445555555666778999999999999
Q ss_pred EEEEEEecCCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCC
Q 025715 162 KFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE 213 (249)
Q Consensus 162 ~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~ 213 (249)
.|+++++...+..++...++..|..+.+++|.++|+.++|.|+||++|++++
T Consensus 149 ~lv~~~~~~~~~~~l~~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~~~~~~ 200 (201)
T 2plw_A 149 TYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNFLGRK 200 (201)
T ss_dssp EEEEEEECSTTHHHHHHHHHTTEEEEEECCCC-----CCEEEEEEEEECCC-
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHheEEEECCcccCCcCceEEEEEecCccCC
Confidence 9999999888888888888889999999999999999999999999999875
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=245.21 Aligned_cols=187 Identities=18% Similarity=0.184 Sum_probs=152.0
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---CCC---
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PIE--- 93 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---~~~--- 93 (249)
+|++||+|||.||+++ +++++|.+|||||||||+|+++++++.+ ...|+|+|+.... +..
T Consensus 61 ~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~g-------------v~sV~Gvdlg~~~~~~P~~~~~ 126 (300)
T 3eld_A 61 ISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKE-------------VMSVKGYTLGIEGHEKPIHMQT 126 (300)
T ss_dssp CCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTT-------------EEEEEEECCCCTTSCCCCCCCB
T ss_pred CccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcC-------------CceeeeEEeccccccccccccc
Confidence 6999999999999999 9999999999999999999999998654 3578899997431 111
Q ss_pred ---CceEeec--CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEEE
Q 025715 94 ---GVIQVQG--DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAKI 167 (249)
Q Consensus 94 ---~v~~~~g--Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k~ 167 (249)
++..... |+.. +.+..+|+|+||++|+ +|.+..|+..++.| +..|.++|+|| |.||+|+
T Consensus 127 ~~~~iv~~~~~~di~~----------l~~~~~DlVlsD~APn-sG~~~~D~~rs~~L----L~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 127 LGWNIVKFKDKSNVFT----------MPTEPSDTLLCDIGES-SSNPLVERDRTMKV----LENFERWKHVNTENFCVKV 191 (300)
T ss_dssp TTGGGEEEECSCCTTT----------SCCCCCSEEEECCCCC-CSSHHHHHHHHHHH----HHHHHHHCCTTCCEEEEEE
T ss_pred cCCceEEeecCceeee----------cCCCCcCEEeecCcCC-CCCHHHHHHHHHHH----HHHHHHHhcCCCCcEEEEe
Confidence 1111221 3322 4567899999999999 99888888777666 88999999999 9999999
Q ss_pred ec--CCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhCCCCCCCCC
Q 025715 168 FR--GKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQ 236 (249)
Q Consensus 168 ~~--~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (249)
|+ +++..++++.++++|..|.+.|| +||++|+|+|+||.+..+....-+.+...++..+..+|.+-..
T Consensus 192 F~~yG~~~~~ll~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r~n~~~~v~~~~~~l~~r~~~~~~~~~~ 261 (300)
T 3eld_A 192 LAPYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEMYYISGARNNITHMVNTTSRSLLRRMTRPSGKAII 261 (300)
T ss_dssp SSTTSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEESSCCCCHHHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred ccccCccHHHHHHHHHHhCCcEEEEeC-CCCCCChHHeeeccCCCCcchhHHHHHHHHHHHHhccCCCCee
Confidence 99 88889999999999999999999 9999999999999997777666676666666666446654444
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=241.59 Aligned_cols=184 Identities=18% Similarity=0.182 Sum_probs=146.8
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCC---CCCCCC---
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ---PMAPIE--- 93 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~---~~~~~~--- 93 (249)
.|++||+|||.||+++ .+++++.+|||||||||+|+++++++.+ ...|+|+|+. ++.+++
T Consensus 54 ~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~-------------~~~v~g~dVGvDl~~~pi~~~~ 119 (277)
T 3evf_A 54 VAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKE-------------VSGVKGFTLGRDGHEKPMNVQS 119 (277)
T ss_dssp BCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTT-------------EEEEEEECCCCTTCCCCCCCCB
T ss_pred CccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcC-------------CCcceeEEEeccCcccccccCc
Confidence 3999999999999999 7789999999999999999999987643 2455555554 333332
Q ss_pred ---CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEEEec
Q 025715 94 ---GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAKIFR 169 (249)
Q Consensus 94 ---~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k~~~ 169 (249)
++..+++|+... .+.+..||+|+||++|+ +|.+..|+..++.| +..|.++|+|| |.||+|+|+
T Consensus 120 ~g~~ii~~~~~~dv~--------~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~L----L~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 120 LGWNIITFKDKTDIH--------RLEPVKCDTLLCDIGES-SSSSVTEGERTVRV----LDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp TTGGGEEEECSCCTT--------TSCCCCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCeEEEeccceeh--------hcCCCCccEEEecCccC-cCchHHHHHHHHHH----HHHHHHHhCCCCCeEEEEecC
Confidence 344455554221 24567899999999999 88877777766555 88999999999 999999999
Q ss_pred --CCCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhC-CCC
Q 025715 170 --GKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVG-SPW 231 (249)
Q Consensus 170 --~~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~-~~~ 231 (249)
+++..++++.+++.|+.|.+.|| +||..|+|+|+||.+..+....-+.....++..+. ..|
T Consensus 187 pyg~~~~~l~~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r~n~~~~v~~~s~~l~~r~~~~~~ 250 (277)
T 3evf_A 187 PYMPDVLEKLELLQRRFGGTVIRNP-LSRNSTHEMYYVSGARSNVTFTVNQTSRLLMRRMRRPTG 250 (277)
T ss_dssp TTSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEESSCCCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCccHHHHHHHHHHhcCCEEEEeC-CCCCCCCceEEEEecCCCccchHHHHHHHHHHHHhcCCC
Confidence 77888999999999999999999 99999999999999877776666665566666663 445
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=220.34 Aligned_cols=194 Identities=32% Similarity=0.548 Sum_probs=151.3
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEe-
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQV- 98 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~- 98 (249)
+|++|+++||.|+++++.+++++.+|||+|||||.++..++++++... .....+.++|+|+|++++..+++++++
T Consensus 1 ~~~~r~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~----~~~~~~~~~v~~vD~s~~~~~~~~~~~~ 76 (196)
T 2nyu_A 1 SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAG----TDPSSPVGFVLGVDLLHIFPLEGATFLC 76 (196)
T ss_dssp CCSSTHHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTC----CCTTSCCCEEEEECSSCCCCCTTCEEEC
T ss_pred CchhHHHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhcccc----ccccCCCceEEEEechhcccCCCCeEEE
Confidence 689999999999999999999999999999999999999999875100 000112379999999998777889999
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHH
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~ 178 (249)
++|+.+......+...+.+++||+|+||+.+++.+.+..++.....++..++..+.++|||||+|+++++......++..
T Consensus 77 ~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 156 (196)
T 2nyu_A 77 PADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQR 156 (196)
T ss_dssp SCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHH
T ss_pred eccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHH
Confidence 99999876655555556556899999999888777665555555666678899999999999999999998777788888
Q ss_pred HHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCc
Q 025715 179 QLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNP 217 (249)
Q Consensus 179 ~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~ 217 (249)
.++.+|..+..++|.++|..++|.|++|.||+.+..|.|
T Consensus 157 ~l~~~f~~v~~~~~~~~~~~~~e~~~v~~g~~~~~~~~~ 195 (196)
T 2nyu_A 157 RLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK 195 (196)
T ss_dssp HHHHHEEEEEEECCC--------EEEEEEEECCC-----
T ss_pred HHHHHhcceEEECCcccCccCceEEEEeeecCCcccccC
Confidence 888889999999999999999999999999999988866
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=195.93 Aligned_cols=156 Identities=21% Similarity=0.157 Sum_probs=129.6
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------- 91 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------- 91 (249)
+|+|||+|||.||+++| .++++++||||||+||+|+++++...+ ..+|+|+|+.....
T Consensus 58 ~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g-------------~~~V~avdvG~~ghe~P~~~~s 123 (267)
T 3p8z_A 58 HAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKK-------------VTEVRGYTKGGPGHEEPVPMST 123 (267)
T ss_dssp CCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTT-------------EEEEEEECCCSTTSCCCCCCCC
T ss_pred CccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcC-------------CCEEEEEecCCCCccCcchhhh
Confidence 59999999999999999 789999999999999999999987664 35899999987531
Q ss_pred --CCCceEeec-CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 92 --IEGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 92 --~~~v~~~~g-Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...|+|.++ |+.. +....+|.|+||+++ .++.+..++.+.+ .+|+.+.++|++ |.|+||++
T Consensus 124 ~gwn~v~fk~gvDv~~----------~~~~~~DtllcDIge-Ss~~~~vE~~Rtl----rvLela~~wL~~-~~fc~KVl 187 (267)
T 3p8z_A 124 YGWNIVKLMSGKDVFY----------LPPEKCDTLLCDIGE-SSPSPTVEESRTI----RVLKMVEPWLKN-NQFCIKVL 187 (267)
T ss_dssp TTTTSEEEECSCCGGG----------CCCCCCSEEEECCCC-CCSCHHHHHHHHH----HHHHHHGGGCSS-CEEEEEES
T ss_pred cCcCceEEEeccceee----------cCCccccEEEEecCC-CCCChhhhhhHHH----HHHHHHHHhccc-CCEEEEEc
Confidence 256899999 9854 244789999999988 4444333443333 388999999999 89999999
Q ss_pred cCCC--HHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEE
Q 025715 169 RGKD--TSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 206 (249)
Q Consensus 169 ~~~~--~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~ 206 (249)
.+.. ..+.+..++..|..+.+.+|. ||.++.|+|+|.
T Consensus 188 ~py~p~v~e~l~~lq~~fgg~lVR~P~-SRnsThEMY~Vs 226 (267)
T 3p8z_A 188 NPYMPTVIEHLERLQRKHGGMLVRNPL-SRNSTHEMYWIS 226 (267)
T ss_dssp CCCSHHHHHHHHHHHHHHCCEEECCTT-SCTTCCCEEEES
T ss_pred cCCChhHHHHHHHHHHHhCCEeEeCCC-CCCCcceEEEEe
Confidence 9887 667777888889999999999 999999999993
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-27 Score=204.75 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=142.1
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC------CCCC
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIE 93 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~------~~~~ 93 (249)
.|++|+++||.+++++ ..+++|.+|||||||||+|+++++++ ++|+|||++++ ....
T Consensus 54 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~----------------~~V~gvD~s~m~~~a~~~~~~ 116 (265)
T 2oxt_A 54 LSVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR----------------PHVMDVRAYTLGVGGHEVPRI 116 (265)
T ss_dssp BCSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS----------------TTEEEEEEECCCCSSCCCCCC
T ss_pred CccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc----------------CcEEEEECchhhhhhhhhhhh
Confidence 4899999999999999 77789999999999999999999865 38999999997 2333
Q ss_pred ------CceEe--ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC--EE
Q 025715 94 ------GVIQV--QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG--KF 163 (249)
Q Consensus 94 ------~v~~~--~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG--~l 163 (249)
++.++ ++|+++. ++++||+|+||++ ...+.+..++... ..++..+.++||||| .|
T Consensus 117 ~~~~~~~v~~~~~~~D~~~l----------~~~~fD~V~sd~~-~~~~~~~~d~~~~----l~~L~~~~r~LkpGG~~~f 181 (265)
T 2oxt_A 117 TESYGWNIVKFKSRVDIHTL----------PVERTDVIMCDVG-ESSPKWSVESERT----IKILELLEKWKVKNPSADF 181 (265)
T ss_dssp CCBTTGGGEEEECSCCTTTS----------CCCCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHHHHHHCTTCEE
T ss_pred hhccCCCeEEEecccCHhHC----------CCCCCcEEEEeCc-ccCCccchhHHHH----HHHHHHHHHHhccCCCeEE
Confidence 67888 9999873 3578999999987 5555433333221 127788899999999 99
Q ss_pred EEEEecCCCHH---HHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhCC
Q 025715 164 IAKIFRGKDTS---LLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGS 229 (249)
Q Consensus 164 v~k~~~~~~~~---~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~~ 229 (249)
+++++. +... +++..+...|..+.+.| .+||..|.|+|+||.++.....+-..++..+++.+..
T Consensus 182 v~kv~~-~~~~~~~~~l~~l~~~f~~v~~~k-~~sR~~s~E~y~v~~~~~~~~~~~~~~~~~l~~r~~~ 248 (265)
T 2oxt_A 182 VVKVLC-PYSVEVMERLSVMQRKWGGGLVRN-PYSRNSTHEMYFTSRAGGNIIGAVTACTERLLGRMAR 248 (265)
T ss_dssp EEEESC-TTSHHHHHHHHHHHHHHCCEEECC-TTSCTTCCCEEEESSCCSCHHHHHHHHHHHHHHTTSC
T ss_pred EEEeCC-CCChhHHHHHHHHHHHcCCEEEEE-ecccCCCccEEEEecCCCCcchhhHHHHHHHHHHHhc
Confidence 999998 4444 66666777899999999 7899999999999998888877777766677777765
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=179.45 Aligned_cols=180 Identities=33% Similarity=0.509 Sum_probs=151.2
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEee
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQ 99 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~ 99 (249)
+|++|+++++.++.+.+..++++.+|||+|||+|.++..+++.++ +..+++++|++++...+++++++
T Consensus 1 ~y~~r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~------------~~~~v~~~D~~~~~~~~~~~~~~ 68 (180)
T 1ej0_A 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG------------GKGRIIACDLLPMDPIVGVDFLQ 68 (180)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHC------------TTCEEEEEESSCCCCCTTEEEEE
T ss_pred CcchhHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhC------------CCCeEEEEECccccccCcEEEEE
Confidence 589999999999999999888999999999999999999998874 34799999999965668899999
Q ss_pred cCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHH
Q 025715 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179 (249)
Q Consensus 100 gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~ 179 (249)
+|+.+.+..+.+...+.+++||+|++|+.+.+.+....++.....+....+..+.++|+|||.+++.++.......+...
T Consensus 69 ~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 148 (180)
T 1ej0_A 69 GDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 148 (180)
T ss_dssp SCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHH
T ss_pred cccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHH
Confidence 99998765444444456678999999987766554433333334455678899999999999999988888888888888
Q ss_pred HhcCCCeeEEecCCCCCCCCceEEEEEeeccC
Q 025715 180 LKLFFPVVTFAKPKSSRNSSIEAFAVCENYFP 211 (249)
Q Consensus 180 l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~ 211 (249)
++.+|..+.+.+|..+|..+.|.|++|+||+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T 1ej0_A 149 IRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180 (180)
T ss_dssp HHHHEEEEEEECCTTSCTTCCEEEEEEEEECC
T ss_pred HHHhhhhEEeecCCcccccCceEEEEEccCCC
Confidence 88889999999999999999999999999873
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-27 Score=206.47 Aligned_cols=179 Identities=19% Similarity=0.121 Sum_probs=138.5
Q ss_pred hccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecC----CC--CC--
Q 025715 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDL----QP--MA-- 90 (249)
Q Consensus 19 ~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi----~~--~~-- 90 (249)
.+|++|+++||.+++++ .++++|.+|||||||||+|+++++++ ++|+|||+ ++ +.
T Consensus 61 ~~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~----------------~~V~gvD~~~~~~~~~~~~~ 123 (305)
T 2p41_A 61 HHAVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL----------------KNVREVKGLTKGGPGHEEPI 123 (305)
T ss_dssp SCCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS----------------TTEEEEEEECCCSTTSCCCC
T ss_pred CCccccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc----------------CCEEEEeccccCchhHHHHH
Confidence 35899999999999999 77899999999999999999999865 37999998 33 21
Q ss_pred ---CC--CCceEeec-CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 91 ---PI--EGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 91 ---~~--~~v~~~~g-Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
.. +++.++++ |+.+. +..+||+|+||++++ .|.+..++... ..++..+.++|||||.|+
T Consensus 124 ~~~~~~~~~v~~~~~~D~~~l----------~~~~fD~V~sd~~~~-~g~~~~d~~~~----l~~L~~~~~~LkpGG~~v 188 (305)
T 2p41_A 124 PMSTYGWNLVRLQSGVDVFFI----------PPERCDTLLCDIGES-SPNPTVEAGRT----LRVLNLVENWLSNNTQFC 188 (305)
T ss_dssp CCCSTTGGGEEEECSCCTTTS----------CCCCCSEEEECCCCC-CSSHHHHHHHH----HHHHHHHHHHCCTTCEEE
T ss_pred HhhhcCCCCeEEEeccccccC----------CcCCCCEEEECCccc-cCcchhhHHHH----HHHHHHHHHHhCCCCEEE
Confidence 12 46888888 88764 246899999999876 55543333221 147788899999999999
Q ss_pred EEEecCCC--HHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhCCC
Q 025715 165 AKIFRGKD--TSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSP 230 (249)
Q Consensus 165 ~k~~~~~~--~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (249)
++++.+.. ...++..++..|..+.+.|| +||..+.|.|++|.||+.....-.+.++.++..+..+
T Consensus 189 ~kv~~~~~~~~~~~l~~l~~~f~~v~~~kP-~sR~~s~E~y~v~~~~~~~~~~~~t~~~~~~~~~~~~ 255 (305)
T 2p41_A 189 VKVLNPYMSSVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVSNASGNIVSSVNMISRMLINRFTMR 255 (305)
T ss_dssp EEESCCCSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCCCCHHHHHHHHHHHHHHHHTCC
T ss_pred EEeCCCCCchHHHHHHHHHHHcCCEEEecC-CCCCccHHHHHHHhccCCcccchhHHHHHHHHhhhcc
Confidence 99998754 44677777778999999999 9999999999999999876544444434444445444
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=199.39 Aligned_cols=178 Identities=23% Similarity=0.233 Sum_probs=135.4
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC------CCCC
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIE 93 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~------~~~~ 93 (249)
.|++|+++||.++.++ ..+++|.+|||||||||+|+++++++ ++|+|||++++ ....
T Consensus 62 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~----------------~~V~gVD~s~m~~~a~~~~~~ 124 (276)
T 2wa2_A 62 HAVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ----------------PNVREVKAYTLGTSGHEKPRL 124 (276)
T ss_dssp ---CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS----------------TTEEEEEEECCCCTTSCCCCC
T ss_pred CcCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc----------------CCEEEEECchhhhhhhhchhh
Confidence 5899999999999988 77789999999999999999999865 38999999997 2233
Q ss_pred ------CceEe--ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC--EE
Q 025715 94 ------GVIQV--QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG--KF 163 (249)
Q Consensus 94 ------~v~~~--~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG--~l 163 (249)
++.++ ++|+.+. ++++||+|+||++ ...+.+..++... ..++..+.++||||| .|
T Consensus 125 ~~~~~~~v~~~~~~~D~~~l----------~~~~fD~Vvsd~~-~~~~~~~~d~~~~----l~~L~~~~r~LkpGG~~~~ 189 (276)
T 2wa2_A 125 VETFGWNLITFKSKVDVTKM----------EPFQADTVLCDIG-ESNPTAAVEASRT----LTVLNVISRWLEYNQGCGF 189 (276)
T ss_dssp CCCTTGGGEEEECSCCGGGC----------CCCCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHHHHHHSTTCEE
T ss_pred hhhcCCCeEEEeccCcHhhC----------CCCCcCEEEECCC-cCCCchhhhHHHH----HHHHHHHHHHhccCCCcEE
Confidence 67888 8998763 4578999999987 5554432332221 126788899999999 99
Q ss_pred EEEEecCCCHH--HHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCchhhhHhHHhhCCC
Q 025715 164 IAKIFRGKDTS--LLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSP 230 (249)
Q Consensus 164 v~k~~~~~~~~--~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~~~~~ 230 (249)
+++++.+.... +++..++..|..+.+. |.+||..+.|+|++|.++......-....+.++..+.+.
T Consensus 190 v~~~~~~~~~~~~~~l~~l~~~f~~v~v~-P~~sR~~s~E~y~v~~~~~~~~~~~~~~~~~l~~r~~~~ 257 (276)
T 2wa2_A 190 CVKVLNPYSCDVLEALMKMQARFGGGLIR-VPLSRNSTHEMYFVSGIKNNIMGNVTAVSRQLLKRMEEQ 257 (276)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHHCCEEEC-CTTSCTTCCCEEEESSCCCCHHHHHHHHHHHHHHHHCC-
T ss_pred EEEeCCCCchhHHHHHHHHHHHcCCEEEE-cCCCCCcchheEEecccCCCcchhHHHHHHHHHHHhhcc
Confidence 99999844321 5556677789999988 999999999999999887766555555555666666553
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-26 Score=194.29 Aligned_cols=157 Identities=24% Similarity=0.208 Sum_probs=126.7
Q ss_pred cCCCeEEEEcC------CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCA------APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~------gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
..|++|||||| +||+| ++.++.+ .++.|+++|++++....++ +++||+....
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p------------~g~~VVavDL~~~~sda~~-~IqGD~~~~~------- 165 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLP------------TGTLLVDSDLNDFVSDADS-TLIGDCATVH------- 165 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSC------------TTCEEEEEESSCCBCSSSE-EEESCGGGEE-------
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCC------------CCcEEEEeeCcccccCCCe-EEEccccccc-------
Confidence 34899999996 99994 5555543 2369999999998866665 5999976532
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEecCC
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 193 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~kP~ 193 (249)
.+++||+|+|||+|+.+|..+.+..++..|++.++..|.+.|+|||.|++|+|+++....+ ..+++.|+.|..+| .
T Consensus 166 --~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L-~~lrk~F~~VK~fK-~ 241 (344)
T 3r24_A 166 --TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADL-YKLMGHFSWWTAFV-T 241 (344)
T ss_dssp --ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHH-HHHHTTEEEEEEEE-E
T ss_pred --cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHH-HHHHhhCCeEEEEC-C
Confidence 2478999999999999998666655566788999999999999999999999998885444 44567999999997 6
Q ss_pred CCCCCCceEEEEEeeccCC--CCCCchhhhH
Q 025715 194 SSRNSSIEAFAVCENYFPP--EGFNPKDLHR 222 (249)
Q Consensus 194 ~sr~~s~E~y~v~~g~~~~--~~~~~~~~~~ 222 (249)
+||..|+|+|+||+||++. ..+|.+.|++
T Consensus 242 ASRa~SsEvYLVG~gfKg~~~~~idg~~~ha 272 (344)
T 3r24_A 242 NVNASSSEAFLIGANYLGKPKEQIDGYTMHA 272 (344)
T ss_dssp GGGTTSSCEEEEEEEECSSCSSCCCHHHHHH
T ss_pred CCCCCCeeEEEEeeeccCCCceeeccceeee
Confidence 9999999999999999996 4456554443
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-25 Score=188.33 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=127.0
Q ss_pred cchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---C------
Q 025715 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---P------ 91 (249)
Q Consensus 21 ~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---~------ 91 (249)
|++|++|||.||++++ .++++.+||||||+||+|+++++...+ ..+|+|+|+.... +
T Consensus 75 y~SR~~~KL~ei~~~~-~l~~~~~VlDLGaapGGwsq~~~~~~g-------------v~~V~avdvG~~~he~P~~~~ql 140 (321)
T 3lkz_A 75 PVSRGTAKLRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQKR-------------VQEVRGYTKGGPGHEEPQLVQSY 140 (321)
T ss_dssp CSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHTTCTT-------------EEEEEEECCCSTTSCCCCCCCBT
T ss_pred ccchHHHHHHHHHHhc-CCCCCCEEEEeCCCCCcHHHHHHhhcC-------------CCEEEEEEcCCCCccCcchhhhc
Confidence 9999999999999995 568889999999999999999887654 3589999998752 1
Q ss_pred -CCCceEeec-CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEEEe
Q 025715 92 -IEGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAKIF 168 (249)
Q Consensus 92 -~~~v~~~~g-Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k~~ 168 (249)
...|.+.++ |+... ....+|+|+||++ ..++.+..++.+.+ .+|+.+.++|++| |.|+||+|
T Consensus 141 ~w~lV~~~~~~Dv~~l----------~~~~~D~ivcDig-eSs~~~~ve~~Rtl----~vLel~~~wL~~~~~~f~~KVl 205 (321)
T 3lkz_A 141 GWNIVTMKSGVDVFYR----------PSECCDTLLCDIG-ESSSSAEVEEHRTI----RVLEMVEDWLHRGPREFCVKVL 205 (321)
T ss_dssp TGGGEEEECSCCTTSS----------CCCCCSEEEECCC-CCCSCHHHHHHHHH----HHHHHHHHHHTTCCCEEEEEES
T ss_pred CCcceEEEeccCHhhC----------CCCCCCEEEEECc-cCCCChhhhhhHHH----HHHHHHHHHhccCCCcEEEEEc
Confidence 134778887 88664 3467999999997 54554333443332 3888999999999 99999999
Q ss_pred cC--CCHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEE
Q 025715 169 RG--KDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 206 (249)
Q Consensus 169 ~~--~~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~ 206 (249)
.+ ++..+.+..++..|..+.+.+|. ||.++.|+|+|.
T Consensus 206 ~pY~~~v~e~l~~lq~~fgg~lvr~P~-SRnst~EmY~vs 244 (321)
T 3lkz_A 206 CPYMPKVIEKMELLQRRYGGGLVRNPL-SRNSTHEMYWVS 244 (321)
T ss_dssp CTTSHHHHHHHHHHHHHHCCEEECCTT-SCTTCCCEEEET
T ss_pred CCCChHHHHHHHHHHHHhCCEeEeCCC-CCCCcceEEEEe
Confidence 98 56667788888899999999999 999999999994
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-22 Score=171.84 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=124.4
Q ss_pred cccCCCeEEEEcC------CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceE-eecCCCChhhHHH
Q 025715 38 IFEGVKRVVDLCA------APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQ-VQGDITNARTAEV 110 (249)
Q Consensus 38 ~~~~g~~vLDLG~------gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~-~~gDi~~~~~~~~ 110 (249)
.+++|.+|||||| |||+ ..++++++ +.++|+|+|+++. ++++++ +++|+++..
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~------------~~~~V~gvDis~~--v~~v~~~i~gD~~~~~---- 119 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLP------------TGTLLVDSDLNDF--VSDADSTLIGDCATVH---- 119 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSC------------TTCEEEEEESSCC--BCSSSEEEESCGGGCC----
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcC------------CCCEEEEEECCCC--CCCCEEEEECccccCC----
Confidence 3578999999999 7788 66676665 3589999999998 678999 999998743
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTF 189 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~~ 189 (249)
+ .++||+|+||+.++..|.+..++.....++..++..+.++|||||+|+++++...+..++...++.+ |..|..
T Consensus 120 ----~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 120 ----T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFV 194 (290)
T ss_dssp ----C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEE
T ss_pred ----c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEE
Confidence 1 2689999999877666655444322234456789999999999999999999888878888888887 888877
Q ss_pred ecCCCCCCCCceEEEEEeeccCC--CCCCchhhhHhH
Q 025715 190 AKPKSSRNSSIEAFAVCENYFPP--EGFNPKDLHRLL 224 (249)
Q Consensus 190 ~kP~~sr~~s~E~y~v~~g~~~~--~~~~~~~~~~~~ 224 (249)
. ++|..++|.|++|+||++. ..+++..++..+
T Consensus 195 ~---asr~~s~e~~lv~~~~~~~~~~~i~~~~~h~~~ 228 (290)
T 2xyq_A 195 T---NVNASSSEAFLIGANYLGKPKEQIDGYTMHANY 228 (290)
T ss_dssp E---GGGTTSSCEEEEEEEECSSCSSCCCHHHHHHHH
T ss_pred E---EcCCCchheEEecCCccCCCcccCCccccccce
Confidence 6 7888899999999999987 345666556553
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=138.29 Aligned_cols=123 Identities=17% Similarity=0.118 Sum_probs=102.3
Q ss_pred CCCCceEe-ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCC-C--cCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 91 PIEGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH-D--MDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 91 ~~~~v~~~-~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~-~--~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+++|+.++ ++|+++++. .+++|+|+|||+++.+|.+ . .|+...+.| ++..|..+|+|||+|++|
T Consensus 186 Pi~GAt~~~~lDfg~p~~---------~~k~DvV~SDMApn~sGh~yqQC~DHarii~L---al~fA~~vLkPGGtfV~K 253 (320)
T 2hwk_A 186 DRPEATFRARLDLGIPGD---------VPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSM---LTKKACLHLNPGGTCVSI 253 (320)
T ss_dssp SSTTCSEECCGGGCSCTT---------SCCEEEEEEECCCCCCSCHHHHHHHHHHHHHH---THHHHGGGEEEEEEEEEE
T ss_pred cCCCceeecccccCCccc---------cCcCCEEEEcCCCCCCCccccccchHHHHHHH---HHHHHHHhcCCCceEEEE
Confidence 46788888 899998763 2579999999999999987 5 566555555 889999999999999999
Q ss_pred EecCC--CHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCC-CCCchhhhHhHHh
Q 025715 167 IFRGK--DTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE-GFNPKDLHRLLEK 226 (249)
Q Consensus 167 ~~~~~--~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~-~~~~~~~~~~~~~ 226 (249)
+|... ...++...+.+.|+.|+.+||.+||. |+|.|+|++||++.. -.++--|+..+++
T Consensus 254 vyggaDr~se~lv~~LaR~F~~Vr~vKP~ASR~-StEvf~La~gf~g~~r~~~~~~l~~~l~~ 315 (320)
T 2hwk_A 254 GYGYADRASESIIGAIARQFKFSRVCKPKSSLE-ETEVLFVFIGYDRKARTHNPYKLSSTLTN 315 (320)
T ss_dssp ECCCCSHHHHHHHHHHHTTEEEEEEECCTTCCS-TTCEEEEEEEECCCCCCCCHHHHHHHHHH
T ss_pred EecCCcccHHHHHHHHHHhcceeeeeCCCCccc-cceEEEEEEeecCCccccCHHHhcchhhh
Confidence 99988 57789999999999999999999999 999999999999954 3455555555554
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=140.51 Aligned_cols=89 Identities=26% Similarity=0.312 Sum_probs=74.9
Q ss_pred hccchhhhhhHHhhhhhcC-------cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC
Q 025715 19 EGWRARSAFKLLQIDEEFN-------IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP 91 (249)
Q Consensus 19 ~~~~~ra~~KL~ei~~~~~-------~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~ 91 (249)
....|||++||.|+...|. .+++|++||||||+|||||+.++++ + ++|+|||+.++.+
T Consensus 182 ~~~pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~r-g--------------~~V~aVD~~~l~~ 246 (375)
T 4auk_A 182 ADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR-N--------------MWVYSVDNGPMAQ 246 (375)
T ss_dssp TTSSCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHT-T--------------CEEEEECSSCCCH
T ss_pred CCCCCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHC-C--------------CEEEEEEhhhcCh
Confidence 4578999999999888773 4689999999999999999999876 2 7999999999874
Q ss_pred ----CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCC
Q 025715 92 ----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 92 ----~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~ 130 (249)
.++|+++++|..... .....||+|+|||+++
T Consensus 247 ~l~~~~~V~~~~~d~~~~~--------~~~~~~D~vvsDm~~~ 281 (375)
T 4auk_A 247 SLMDTGQVTWLREDGFKFR--------PTRSNISWMVCDMVEK 281 (375)
T ss_dssp HHHTTTCEEEECSCTTTCC--------CCSSCEEEEEECCSSC
T ss_pred hhccCCCeEEEeCcccccc--------CCCCCcCEEEEcCCCC
Confidence 478999999987753 2346899999999764
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=121.30 Aligned_cols=139 Identities=15% Similarity=0.087 Sum_probs=94.2
Q ss_pred cchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C
Q 025715 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P 91 (249)
Q Consensus 21 ~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~ 91 (249)
|+++.+-+|.+..+.+. +++|.+|||+|||||+++.++++.++ +.++|+|+|+++.. .
T Consensus 57 ~~skla~~ll~~l~~~~-l~~g~~VLDlG~GtG~~t~~la~~v~------------~~G~V~avD~s~~~l~~l~~~a~~ 123 (232)
T 3id6_C 57 FRSKLAGAILKGLKTNP-IRKGTKVLYLGAASGTTISHVSDIIE------------LNGKAYGVEFSPRVVRELLLVAQR 123 (232)
T ss_dssp TTCHHHHHHHTTCSCCS-CCTTCEEEEETCTTSHHHHHHHHHHT------------TTSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcC-CCCCCEEEEEeecCCHHHHHHHHHhC------------CCCEEEEEECcHHHHHHHHHHhhh
Confidence 45555666665544433 47899999999999999999999886 56899999999832 1
Q ss_pred CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec--
Q 025715 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-- 169 (249)
Q Consensus 92 ~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-- 169 (249)
..++.++.+|++.+.... .+ .++||+|++|++.. +.. ..+...+.++|||||.|++.+..
T Consensus 124 r~nv~~i~~Da~~~~~~~----~~-~~~~D~I~~d~a~~-------~~~------~il~~~~~~~LkpGG~lvisik~~~ 185 (232)
T 3id6_C 124 RPNIFPLLADARFPQSYK----SV-VENVDVLYVDIAQP-------DQT------DIAIYNAKFFLKVNGDMLLVIKARS 185 (232)
T ss_dssp CTTEEEEECCTTCGGGTT----TT-CCCEEEEEECCCCT-------THH------HHHHHHHHHHEEEEEEEEEEEC---
T ss_pred cCCeEEEEcccccchhhh----cc-ccceEEEEecCCCh-------hHH------HHHHHHHHHhCCCCeEEEEEEccCC
Confidence 368999999998754210 12 35899999998641 111 12334566699999999986431
Q ss_pred -------CCCHHHHHHHHhcC-CCeeEEe
Q 025715 170 -------GKDTSLLYCQLKLF-FPVVTFA 190 (249)
Q Consensus 170 -------~~~~~~l~~~l~~~-f~~v~~~ 190 (249)
.+...+....++.. |+-+...
T Consensus 186 ~d~t~~~~e~~~~~~~~L~~~gf~~~~~~ 214 (232)
T 3id6_C 186 IDVTKDPKEIYKTEVEKLENSNFETIQII 214 (232)
T ss_dssp ----CCSSSSTTHHHHHHHHTTEEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 12234555556543 6655544
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=120.87 Aligned_cols=149 Identities=20% Similarity=0.324 Sum_probs=99.0
Q ss_pred cc-CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCCh
Q 025715 39 FE-GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNA 105 (249)
Q Consensus 39 ~~-~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~ 105 (249)
++ ++.+|||+|||+|.++..++++.+ ..|+|+|+++.. .+. +++++++|+.+.
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~--------------~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~ 111 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTK--------------AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCC--------------CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGG
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcC--------------CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHh
Confidence 35 789999999999999999988743 499999999842 122 589999999875
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCC---CCCCcCHHH------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVT---GLHDMDEFV------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~---g~~~~~~~~------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
.. .+..++||+|++|+++... +..+.+... ........+..+.++|||||.|++ ++......++
T Consensus 112 ~~------~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~ 184 (259)
T 3lpm_A 112 TD------LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF-VHRPERLLDI 184 (259)
T ss_dssp GG------TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE-EECTTTHHHH
T ss_pred hh------hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE-EEcHHHHHHH
Confidence 31 2446799999999865332 222221111 112245688999999999999999 6777788888
Q ss_pred HHHHhcC-C--CeeEEecCCCCCCCCceEEEEEeeccC
Q 025715 177 YCQLKLF-F--PVVTFAKPKSSRNSSIEAFAVCENYFP 211 (249)
Q Consensus 177 ~~~l~~~-f--~~v~~~kP~~sr~~s~E~y~v~~g~~~ 211 (249)
...++.+ | .++..+.|...++. .+++.++.++
T Consensus 185 ~~~l~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~k~ 219 (259)
T 3lpm_A 185 IDIMRKYRLEPKRIQFVHPRSDREA---NTVLVEGIKD 219 (259)
T ss_dssp HHHHHHTTEEEEEEEEEESSTTSCC---SEEEEEEEET
T ss_pred HHHHHHCCCceEEEEEeecCCCCCc---EEEEEEEEeC
Confidence 8877754 3 33444555544443 3455555554
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=118.23 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=97.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-----CC-CceEeecCCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-----IE-GVIQVQGDIT 103 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-----~~-~v~~~~gDi~ 103 (249)
..++.+|||+|||+|.++..++++.+ ...|+++|+++.. . +. +++++++|+.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~-------------~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~ 100 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLE-------------KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVT 100 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCT-------------TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHH
Confidence 35778999999999999999998863 4799999999731 1 12 4788999998
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCC-CCCCcCHHHHHH------HHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVT-GLHDMDEFVQSQ------LILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~-g~~~~~~~~~~~------l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+... ......+..++||+|++|+++... +..+.+...... .....+..+.++|||||.|++ ++......++
T Consensus 101 ~~~~-~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~ 178 (260)
T 2ozv_A 101 LRAK-ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL-ISRPQSVAEI 178 (260)
T ss_dssp CCHH-HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE-EECGGGHHHH
T ss_pred HHhh-hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE-EEcHHHHHHH
Confidence 8521 111122456789999999754332 211111111111 135678899999999999998 5666677778
Q ss_pred HHHHhcCCCeeEE--ecCCCCCCCCceEEEEE
Q 025715 177 YCQLKLFFPVVTF--AKPKSSRNSSIEAFAVC 206 (249)
Q Consensus 177 ~~~l~~~f~~v~~--~kP~~sr~~s~E~y~v~ 206 (249)
...++..|..+.+ +.|...++.. ++++.
T Consensus 179 ~~~l~~~~~~~~i~~v~~~~~~~~~--~~lv~ 208 (260)
T 2ozv_A 179 IAACGSRFGGLEITLIHPRPGEDAV--RMLVT 208 (260)
T ss_dssp HHHHTTTEEEEEEEEEESSTTSCCC--EEEEE
T ss_pred HHHHHhcCCceEEEEEcCCCCCCce--EEEEE
Confidence 8877766655544 4455444433 44444
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=120.38 Aligned_cols=157 Identities=19% Similarity=0.212 Sum_probs=106.7
Q ss_pred hccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C
Q 025715 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I 92 (249)
Q Consensus 19 ~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~ 92 (249)
..|++|+++||.++.+.|.+-.+|.+|||+|||||+|+..++++ + ..+|+|||+++... .
T Consensus 63 ~~yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g-------------a~~V~aVDvs~~mL~~a~r~~ 128 (291)
T 3hp7_A 63 LRYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G-------------AKLVYAVDVGTNQLVWKLRQD 128 (291)
T ss_dssp CCSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEECSSSSCSCHHHHTC
T ss_pred cccccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C-------------CCEEEEEECCHHHHHHHHHhC
Confidence 46999999999999999987677899999999999999998876 3 36999999998431 1
Q ss_pred CCceEe-ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE---e
Q 025715 93 EGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI---F 168 (249)
Q Consensus 93 ~~v~~~-~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~---~ 168 (249)
+++... ..|+..... +.++..+||+|++|.++.. . ..++..+.++|+|||.|++.+ |
T Consensus 129 ~rv~~~~~~ni~~l~~-----~~l~~~~fD~v~~d~sf~s-----l---------~~vL~e~~rvLkpGG~lv~lvkPqf 189 (291)
T 3hp7_A 129 DRVRSMEQYNFRYAEP-----VDFTEGLPSFASIDVSFIS-----L---------NLILPALAKILVDGGQVVALVKPQF 189 (291)
T ss_dssp TTEEEECSCCGGGCCG-----GGCTTCCCSEEEECCSSSC-----G---------GGTHHHHHHHSCTTCEEEEEECGGG
T ss_pred cccceecccCceecch-----hhCCCCCCCEEEEEeeHhh-----H---------HHHHHHHHHHcCcCCEEEEEECccc
Confidence 343222 334433221 1234446999999987542 1 246788899999999999852 2
Q ss_pred cCC------------------CHHHHHHHHhcC-CCeeEE-ecCCCCCCCCceEEEEEee
Q 025715 169 RGK------------------DTSLLYCQLKLF-FPVVTF-AKPKSSRNSSIEAFAVCEN 208 (249)
Q Consensus 169 ~~~------------------~~~~l~~~l~~~-f~~v~~-~kP~~sr~~s~E~y~v~~g 208 (249)
... ...++...+... |....+ ..|......|.|..+.++.
T Consensus 190 e~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 190 EAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLEK 249 (291)
T ss_dssp TSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEEEEEEE
T ss_pred ccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHHHHhhh
Confidence 111 011233333332 554444 4577777889987766654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=127.97 Aligned_cols=125 Identities=21% Similarity=0.292 Sum_probs=92.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++.+++++++ ..+.|+|+|+++.+ .+.++.++++|..+..
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~------------~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-- 169 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMK------------GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-- 169 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHT------------TCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH--
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh--
Confidence 6789999999999999999999886 45899999999842 2456778888875532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCH-----------HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~-----------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
..+ .++||+|++|++++..|....+. .....++..++..|.++|||||.|++.+++ .++..
T Consensus 170 ----~~~-~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~ 244 (456)
T 3m4x_A 170 ----PHF-SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEE 244 (456)
T ss_dssp ----HHH-TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHH
T ss_pred ----hhc-cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHH
Confidence 122 36899999999776655432222 122456678999999999999999987774 23445
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.++++++
T Consensus 245 vv~~~l~~~ 253 (456)
T 3m4x_A 245 IISWLVENY 253 (456)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 566666654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=119.38 Aligned_cols=123 Identities=19% Similarity=0.170 Sum_probs=89.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++.++++.++ +.++|+|+|+++.+ .+++++++++|+.+...
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~------------~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~- 183 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMR------------NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE- 183 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTT------------TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc-
Confidence 5789999999999999999999875 35899999999842 24578899999877531
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCc--------CH---HHHHHHHHHHHHHHHHhccCCCEEEEEEecC---CCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM--------DE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~--------~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~~~ 174 (249)
. .++||+|++|+++...|.... .. .....++..++..+.++|||||.|++.++.. ++..
T Consensus 184 ------~-~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~ 256 (315)
T 1ixk_A 184 ------L-NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEF 256 (315)
T ss_dssp ------G-CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHH
T ss_pred ------c-cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHH
Confidence 1 358999999987655553211 11 1123456788999999999999999977642 3344
Q ss_pred HHHHHHhc
Q 025715 175 LLYCQLKL 182 (249)
Q Consensus 175 ~l~~~l~~ 182 (249)
.+..++++
T Consensus 257 ~v~~~l~~ 264 (315)
T 1ixk_A 257 VIQWALDN 264 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 45566665
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=126.65 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
+|.+|||+|||||+++.+++++++ +.+.|+|+|+++.+ .+.++.++++|..+...
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~------------~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-- 182 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMN------------NEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-- 182 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTT------------TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH--
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh--
Confidence 889999999999999999999885 35899999999842 24578889999987431
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCC--------CcCH---HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLH--------DMDE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTSL 175 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~--------~~~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~~ 175 (249)
. ..++||+|++|++++..|.. .+.. .....++..++..|.++|||||.||+.+++ .++...
T Consensus 183 ----~-~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~v 257 (479)
T 2frx_A 183 ----A-VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAV 257 (479)
T ss_dssp ----H-STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHH
T ss_pred ----h-ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHH
Confidence 1 23689999999876544421 1111 123446678899999999999999998774 234445
Q ss_pred HHHHHhcC
Q 025715 176 LYCQLKLF 183 (249)
Q Consensus 176 l~~~l~~~ 183 (249)
+.++++++
T Consensus 258 v~~~l~~~ 265 (479)
T 2frx_A 258 CLWLKETY 265 (479)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHC
Confidence 55666655
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=127.83 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=90.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++.+++++++ ..+.|+|+|+++.+ .+. +.++++|..+..
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~------------~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-- 164 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMG------------GKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-- 164 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTT------------TCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH--
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh--
Confidence 5789999999999999999999886 45899999999843 134 778888876532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC----------cC-HHHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD----------MD-EFVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~----------~~-~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
..+ .++||+|++|++++..|... .+ ......++..++..+.++|||||.|++.+++ .++..
T Consensus 165 ----~~~-~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~ 239 (464)
T 3m6w_A 165 ----EAF-GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEG 239 (464)
T ss_dssp ----HHH-CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHH
T ss_pred ----hhc-cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHH
Confidence 112 36899999998765544311 11 1223456788999999999999999987774 23445
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.++++++
T Consensus 240 vv~~~l~~~ 248 (464)
T 3m6w_A 240 VVAHFLKAH 248 (464)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 566666654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-13 Score=111.91 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=78.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
++||++|||||||+|.++.++++.++ +.|+|+|+|+++.. ..+|+..+.+|..++...
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG------------~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~- 141 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIG------------PRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKY- 141 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC------------TTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGG-
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhC------------CCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcccc-
Confidence 48999999999999999999999997 67999999999732 246888899999886531
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+...++|+|++|.... +. ...++..+.+.|||||.+++.+
T Consensus 142 ----~~~~~~vDvVf~d~~~~-------~~------~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 142 ----RHLVEGVDGLYADVAQP-------EQ------AAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp ----TTTCCCEEEEEECCCCT-------TH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----ccccceEEEEEEeccCC-------hh------HHHHHHHHHHhccCCCEEEEEE
Confidence 12346899999986421 11 1246788899999999999854
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-13 Score=116.33 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=85.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++..+++.++ ..++|+|+|+++.+ .+++++++++|+.+...
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~------------~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~- 148 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMK------------NKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKD- 148 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTT------------TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH-
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch-
Confidence 5789999999999999999999875 34799999999742 23578888998865421
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcC----HHHH---HHHHHHHHHHHHHhccCCCEEEEEEecC---CCHHHHHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD----EFVQ---SQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTSLLYC 178 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~----~~~~---~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~~~~l~~ 178 (249)
.+. ...++||+|++|+++...|....+ .... ..++..++..+.++|||||.|++.++.. ++...+.+
T Consensus 149 -~~~--~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~ 225 (274)
T 3ajd_A 149 -YLL--KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKY 225 (274)
T ss_dssp -HHH--HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHH
T ss_pred -hhh--hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHH
Confidence 000 024689999999866544432111 1111 1234678899999999999999987642 34445556
Q ss_pred HHhcC
Q 025715 179 QLKLF 183 (249)
Q Consensus 179 ~l~~~ 183 (249)
+++.+
T Consensus 226 ~l~~~ 230 (274)
T 3ajd_A 226 ILQKR 230 (274)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=113.55 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=90.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++.++++.++ +.++|+|+|+++.+ .+.+++++++|+.+...
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~------------~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~- 167 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLK------------NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP- 167 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT-
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc-
Confidence 5789999999999999999999875 45899999999842 24578889999876421
Q ss_pred HHHHHhcC-CCcccEEEeCCCCCCCCCCCc--C-----------HHHHHHHHHHHHHHHHHhccCCCEEEEEEec---CC
Q 025715 109 EVVIRHFD-GCKADLVVCDGAPDVTGLHDM--D-----------EFVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GK 171 (249)
Q Consensus 109 ~~i~~~~~-~~~~DlVlsD~~~~~~g~~~~--~-----------~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~ 171 (249)
... ..+||.|++|+++...|.... + -.....++..+|..|.++|+ ||.||+.+++ .+
T Consensus 168 -----~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~E 241 (309)
T 2b9e_A 168 -----SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEE 241 (309)
T ss_dssp -----TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGG
T ss_pred -----cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHH
Confidence 000 147999999997766554211 1 12234466778889998887 9999987764 34
Q ss_pred CHHHHHHHHhcCCCeeEE
Q 025715 172 DTSLLYCQLKLFFPVVTF 189 (249)
Q Consensus 172 ~~~~l~~~l~~~f~~v~~ 189 (249)
+...+.++++++...+..
T Consensus 242 ne~~v~~~l~~~~~~~~~ 259 (309)
T 2b9e_A 242 NEDVVRDALQQNPGAFRL 259 (309)
T ss_dssp THHHHHHHHTTSTTTEEE
T ss_pred hHHHHHHHHHhCCCcEEE
Confidence 455666777765332333
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=120.58 Aligned_cols=126 Identities=24% Similarity=0.210 Sum_probs=92.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+++..+++.++ ..+.|+|+|+++.+ .+.+++++++|+.+...
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~------------~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~- 324 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMK------------NKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE- 324 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTT------------TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS-
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch-
Confidence 5789999999999999999999875 34799999999842 24578889999877431
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCC--cC---------HHHHHHHHHHHHHHHHHhccCCCEEEEEEecC---CCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--MD---------EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~--~~---------~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~~~ 174 (249)
.+.+++||+|++|+++...|... .+ ......++..++..+.++|||||.|++.++.. ++..
T Consensus 325 -----~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~ 399 (450)
T 2yxl_A 325 -----IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEK 399 (450)
T ss_dssp -----SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHH
T ss_pred -----hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHH
Confidence 13346899999998766555321 11 12234456788999999999999999877743 3444
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+..++..+
T Consensus 400 ~v~~~l~~~ 408 (450)
T 2yxl_A 400 NIRWFLNVH 408 (450)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 566667654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=106.11 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=98.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+++.. .+++++++++|+.+.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~--- 171 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP-------------DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--- 171 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-------------TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh---
Confidence 4678999999999999999998764 4799999999742 235788999998763
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCC---------CCc-----CHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGL---------HDM-----DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~---------~~~-----~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~ 174 (249)
+..++||+|++|++....+. +.. ............+..+.++|+|||.+++.. ......
T Consensus 172 ------~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~ 244 (276)
T 2b3t_A 172 ------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GWQQGE 244 (276)
T ss_dssp ------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CSSCHH
T ss_pred ------cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-CchHHH
Confidence 23468999999975432211 000 001112345678889999999999999853 334455
Q ss_pred HHHHHHhcC-CCeeEEecCCCCCCCCceEEEEEee
Q 025715 175 LLYCQLKLF-FPVVTFAKPKSSRNSSIEAFAVCEN 208 (249)
Q Consensus 175 ~l~~~l~~~-f~~v~~~kP~~sr~~s~E~y~v~~g 208 (249)
++...++.. |..+.+.+....+ +++++++.
T Consensus 245 ~~~~~l~~~Gf~~v~~~~d~~g~----~r~~~~~~ 275 (276)
T 2b3t_A 245 AVRQAFILAGYHDVETCRDYGDN----ERVTLGRY 275 (276)
T ss_dssp HHHHHHHHTTCTTCCEEECTTSS----EEEEEEEC
T ss_pred HHHHHHHHCCCcEEEEEecCCCC----CcEEEEEE
Confidence 666666554 8878777665544 56777653
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=104.28 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=73.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
++++.+|||+|||+|.++..++++ + ++|+|+|+++.. .+++++++++|..+..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~-~--------------~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~- 83 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL-S--------------KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD- 83 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT-S--------------SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG-
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH-
Confidence 468899999999999999999876 4 799999999842 2367888887766532
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+.+++||+|+++...-..+..... ........++..+.++|||||.+++.++.
T Consensus 84 ------~~~~~~fD~v~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 84 ------HYVREPIRAAIFNLGYLPSADKSVI--TKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp ------GTCCSCEEEEEEEEC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred ------hhccCCcCEEEEeCCCCCCcchhcc--cChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 1235789999998422111110000 01122345788899999999999998775
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=105.48 Aligned_cols=151 Identities=15% Similarity=-0.052 Sum_probs=90.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CC----CceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IE----GVIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~----~v~~~~gDi~~~~~~ 108 (249)
..++.+|||+|||+|.++..+++..+ ..+|+|+|+++... .. +++++++|+.+..
T Consensus 28 ~~~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 92 (215)
T 4dzr_A 28 MPSGTRVIDVGTGSGCIAVSIALACP-------------GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWL-- 92 (215)
T ss_dssp CCTTEEEEEEESSBCHHHHHHHHHCT-------------TEEEEEEECC-------------------CCHHHHHHHH--
T ss_pred cCCCCEEEEecCCHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhh--
Confidence 36789999999999999999998753 46999999998431 11 4566677765521
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCC-CcCHHH--------------HHHHHHHHHHHHHHhccCCCEEEEEEecCCCH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFV--------------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~-~~~~~~--------------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~ 173 (249)
... ....++||+|++|+++...+.. ...... ....+...+..+.++|||||.+++-.+.....
T Consensus 93 ~~~--~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 170 (215)
T 4dzr_A 93 IER--AERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQA 170 (215)
T ss_dssp HHH--HHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCH
T ss_pred hhh--hhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccH
Confidence 000 0123789999999765332211 000000 01122567888899999999944435555556
Q ss_pred HHHHHHHh---cCCCeeEEecCCCCCCCCceEEEEEeecc
Q 025715 174 SLLYCQLK---LFFPVVTFAKPKSSRNSSIEAFAVCENYF 210 (249)
Q Consensus 174 ~~l~~~l~---~~f~~v~~~kP~~sr~~s~E~y~v~~g~~ 210 (249)
..+...+. .-|..+.+.+....+ +++++++...
T Consensus 171 ~~~~~~l~~~~~gf~~~~~~~~~~~~----~r~~~~~~~~ 206 (215)
T 4dzr_A 171 DEVARLFAPWRERGFRVRKVKDLRGI----DRVIAVTREP 206 (215)
T ss_dssp HHHHHHTGGGGGGTEECCEEECTTSC----EEEEEEEECC
T ss_pred HHHHHHHHHhhcCCceEEEEEecCCC----EEEEEEEEcC
Confidence 66666665 347777777655543 5777766543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=110.79 Aligned_cols=102 Identities=23% Similarity=0.188 Sum_probs=76.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~ 106 (249)
+++|.+|||||||+|.++..++++.+. ++.+|+|+|+++.. ...+++++++|+.+.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~-----------~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~ 136 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHH-----------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 136 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCS-----------SSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCC-----------CCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc
Confidence 579999999999999999999987642 35699999999731 1236899999998753
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
.+.+|+|++...... ..... ...++..+.++|||||.|++.....
T Consensus 137 ----------~~~~d~v~~~~~l~~-----~~~~~----~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 137 ----------IENASMVVLNFTLQF-----LEPSE----RQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp ----------CCSEEEEEEESCGGG-----SCHHH----HHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ----------ccccccceeeeeeee-----cCchh----HhHHHHHHHHHcCCCcEEEEEeccC
Confidence 357999999764332 12111 1356888999999999999875543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=117.15 Aligned_cols=123 Identities=21% Similarity=0.173 Sum_probs=86.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------------CCCceEeecCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------------IEGVIQVQGDI 102 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------------~~~v~~~~gDi 102 (249)
++|.+|||+||||||.|.++++.+. .+.|+|+|+++.+. ..++.....|.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~-------------~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~ 213 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGC-------------CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG 213 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTC-------------EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-------------CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch
Confidence 6899999999999999999998653 47899999997320 12456666776
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCC--CC--CC------cCHHH---HHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVT--GL--HD------MDEFV---QSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~--g~--~~------~~~~~---~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.... ....+.||.|+.|.+++.. |. ++ ..... ...++..+|..|.++|||||.||..+++
T Consensus 214 ~~~~-------~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 214 RKWG-------ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp GGHH-------HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred hhcc-------hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 6532 1234789999999976643 21 11 11111 2446788999999999999999988885
Q ss_pred --C-CCHHHHHHHHhc
Q 025715 170 --G-KDTSLLYCQLKL 182 (249)
Q Consensus 170 --~-~~~~~l~~~l~~ 182 (249)
+ ++...+.++++.
T Consensus 287 l~~~ENE~vV~~~L~~ 302 (359)
T 4fzv_A 287 LSHLQNEYVVQGAIEL 302 (359)
T ss_dssp CCTTTTHHHHHHHHHH
T ss_pred CchhhCHHHHHHHHHh
Confidence 3 344445556654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.6e-12 Score=114.66 Aligned_cols=125 Identities=21% Similarity=0.204 Sum_probs=90.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C----CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~----~~v~~~~gDi~~~~~~~ 109 (249)
++|.+|||+|||||+++..+++.++ .+.|+|+|+++... + -+++++++|..+...
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~-------------~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~-- 309 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAP-------------EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-- 309 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCT-------------TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH--
T ss_pred CCcCeEEEECCCchHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchh--
Confidence 5789999999999999999999874 48999999998641 0 146788999987531
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCC--CcC---------HHHHHHHHHHHHHHHHHhccCCCEEEEEEecC---CCHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLH--DMD---------EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTSL 175 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~--~~~---------~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---~~~~~ 175 (249)
.+.+++||+|++|+++...|.. +.+ ......++..++..+.++|||||.+++.++.- ++...
T Consensus 310 ----~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~ 385 (429)
T 1sqg_A 310 ----WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQ 385 (429)
T ss_dssp ----HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHH
T ss_pred ----hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHH
Confidence 2345689999999876655432 111 11234456788999999999999999987642 34445
Q ss_pred HHHHHhcC
Q 025715 176 LYCQLKLF 183 (249)
Q Consensus 176 l~~~l~~~ 183 (249)
+..++..+
T Consensus 386 v~~~l~~~ 393 (429)
T 1sqg_A 386 IKAFLQRT 393 (429)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 66666654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.2e-12 Score=103.77 Aligned_cols=132 Identities=11% Similarity=-0.041 Sum_probs=87.2
Q ss_pred ccCCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~ 106 (249)
++++.+|||+||| +|.++..+++..+ .+|+|+|+++.. .+ +++++++|+....
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 117 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFN--------------CKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIK 117 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHC--------------CEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSST
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhh
Confidence 4688999999999 9999999988753 799999999842 12 6889999975432
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHH--------HHHHHHHHHHHHHHhccCCCEEEEEEecC-CCHHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV--------QSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLY 177 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~--------~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~-~~~~~l~ 177 (249)
.+.+++||+|++|++....+.....+.. .......++..+.++|||||.+++.+... ....++.
T Consensus 118 -------~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 190 (230)
T 3evz_A 118 -------GVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIK 190 (230)
T ss_dssp -------TTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHH
T ss_pred -------hcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHH
Confidence 1345789999999764332211110000 01223567889999999999999865443 3345666
Q ss_pred HHHhcCCCeeEEecC
Q 025715 178 CQLKLFFPVVTFAKP 192 (249)
Q Consensus 178 ~~l~~~f~~v~~~kP 192 (249)
..+++.--.+...+.
T Consensus 191 ~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 191 ERGIKLGYSVKDIKF 205 (230)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHcCCceEEEEe
Confidence 666655324544443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=100.81 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=78.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
++++.+|||+|||+|.++..++++.+ +.++|+|+|+++.. .+ ++++++++|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 87 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVG------------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD 87 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHC------------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh
Confidence 36889999999999999999999875 35799999999742 12 56889999987643
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCC-CcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~-~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
. +.+++||+|++|++....+.. ..... ......+..+.++|||||.+++..+.
T Consensus 88 ~-------~~~~~fD~v~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 88 K-------YIDCPVKAVMFNLGYLPSGDHSISTRP---ETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp G-------TCCSCEEEEEEEESBCTTSCTTCBCCH---HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred h-------hccCCceEEEEcCCcccCcccccccCc---ccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 1 234789999999753111111 11111 11234788899999999999997764
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-12 Score=108.25 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=74.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----CCCCCceEeecCCCChhhHHHHHHh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----APIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----~~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
..+.+|||+|||+|.++..++++. .+|+|+|+++. ...+++++.++|+.+.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~---------------~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-------- 94 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF---------------ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-------- 94 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC---------------SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCC--------
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC---------------CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhc--------
Confidence 345799999999999999998753 58999999973 23578999999998754
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.+++||+|++..+..+. +. ..++..+.++|||||.|++-.+.
T Consensus 95 ~~~~sfD~v~~~~~~h~~-----~~-------~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 95 LPPASVDVAIAAQAMHWF-----DL-------DRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp CCSSCEEEEEECSCCTTC-----CH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCCcccEEEEeeehhHh-----hH-------HHHHHHHHHHcCCCCEEEEEECC
Confidence 467899999997665432 32 24678899999999999986664
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=6e-12 Score=101.23 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=88.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC--ceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~--v~~~~gDi~~~~ 106 (249)
+++.+|||+|||+|.++..+++. + ..|+++|+++.. .+++ ++++++|+.+..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~-~--------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE-V--------------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG-S--------------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence 47889999999999999998876 4 699999999732 2344 889999987732
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPV 186 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~ 186 (249)
..++||+|++++.... . .......+..+.++|+|||.+++.........++...+++.|..
T Consensus 116 ---------~~~~~D~v~~~~~~~~------~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~ 176 (194)
T 1dus_A 116 ---------KDRKYNKIITNPPIRA------G----KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGN 176 (194)
T ss_dssp ---------TTSCEEEEEECCCSTT------C----HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSC
T ss_pred ---------ccCCceEEEECCCccc------c----hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcc
Confidence 3468999999875321 1 11234578888999999999999877665555677777777877
Q ss_pred eEEec
Q 025715 187 VTFAK 191 (249)
Q Consensus 187 v~~~k 191 (249)
+.+.+
T Consensus 177 ~~~~~ 181 (194)
T 1dus_A 177 VETVT 181 (194)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 77653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=111.93 Aligned_cols=135 Identities=16% Similarity=0.036 Sum_probs=94.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+.++.+|||+|||+|.++..+++..+ .++|+|+|+++.+ .+.++.++++|+.+.+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~-------------~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~- 182 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSK-------------PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE- 182 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC-------------CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-
Confidence 56889999999999999999998753 4799999999742 2457889999987641
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC-----CCHHHHHHHHhc
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-----KDTSLLYCQLKL 182 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~-----~~~~~l~~~l~~ 182 (249)
..++||+|++|++.. . ...+..+.+.|+|||.+++..+.. +...+....+..
T Consensus 183 --------~~~~~D~Vi~d~p~~------~---------~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~ 239 (272)
T 3a27_A 183 --------LKDVADRVIMGYVHK------T---------HKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAE 239 (272)
T ss_dssp --------CTTCEEEEEECCCSS------G---------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHH
T ss_pred --------ccCCceEEEECCccc------H---------HHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHH
Confidence 135899999997531 1 135677889999999999887743 233444444443
Q ss_pred C-CCeeEEecCCCCCCCCceEEEEEeecc
Q 025715 183 F-FPVVTFAKPKSSRNSSIEAFAVCENYF 210 (249)
Q Consensus 183 ~-f~~v~~~kP~~sr~~s~E~y~v~~g~~ 210 (249)
. ...+........|..+...|.+|..|+
T Consensus 240 ~~~~~~~~~~~~~v~~~~p~~~~~~~d~~ 268 (272)
T 3a27_A 240 KNGYKLIDYEVRKIKKYAPGVWHVVVDAK 268 (272)
T ss_dssp HTTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HhCCeeEEeEEEEEEEECCCCCEEEEEEE
Confidence 3 234444444444444455777777765
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=100.21 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.+.+|||+|||+|.++..++++ + .+|+|+|+++.. ..++++++++|+.+.+
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-------- 97 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASL-G--------------HQIEGLEPATRLVELARQTHPSVTFHHGTITDLS-------- 97 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHT-T--------------CCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGG--------
T ss_pred CCCeEEEecCCCCHHHHHHHhc-C--------------CeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccc--------
Confidence 3789999999999999999875 3 589999999742 1468899999998753
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC---------------CHHHHHHH
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK---------------DTSLLYCQ 179 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~---------------~~~~l~~~ 179 (249)
+.+++||+|++......... .+ ...++..+.++|+|||.+++.++... ...++...
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~--~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (203)
T 3h2b_A 98 DSPKRWAGLLAWYSLIHMGP--GE-------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQA 168 (203)
T ss_dssp GSCCCEEEEEEESSSTTCCT--TT-------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHH
T ss_pred cCCCCeEEEEehhhHhcCCH--HH-------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHH
Confidence 35679999999865443211 12 23578888999999999999876432 35667776
Q ss_pred HhcC-CCeeEEecCCCCCCCCceEEEEEeeccCC
Q 025715 180 LKLF-FPVVTFAKPKSSRNSSIEAFAVCENYFPP 212 (249)
Q Consensus 180 l~~~-f~~v~~~kP~~sr~~s~E~y~v~~g~~~~ 212 (249)
++.. |+.+.+..-.. ....+++.......
T Consensus 169 l~~~Gf~~~~~~~~~~----~p~~~l~~~~~~~~ 198 (203)
T 3h2b_A 169 LETAGFQVTSSHWDPR----FPHAYLTAEASLEH 198 (203)
T ss_dssp HHHTTEEEEEEEECTT----SSEEEEEEEECC--
T ss_pred HHHCCCcEEEEEecCC----Ccchhhhhhhhhhh
Confidence 6654 77666542212 33566665554443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=105.39 Aligned_cols=157 Identities=19% Similarity=0.200 Sum_probs=98.8
Q ss_pred hccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C
Q 025715 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I 92 (249)
Q Consensus 19 ~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~ 92 (249)
..|.+|+++||.++.+.+..-.++.+|||+|||+|.++..++++ + ..+|+|+|+++... .
T Consensus 15 ~~yvsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g-------------~~~V~gvDis~~ml~~a~~~~ 80 (232)
T 3opn_A 15 LRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-G-------------AKLVYALDVGTNQLAWKIRSD 80 (232)
T ss_dssp CCSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEECSSCCCCCHHHHTC
T ss_pred CCccCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-C-------------CCEEEEEcCCHHHHHHHHHhC
Confidence 36999999999999999987667889999999999999999876 3 25999999998541 1
Q ss_pred CCceEe-ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE---e
Q 025715 93 EGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI---F 168 (249)
Q Consensus 93 ~~v~~~-~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~---~ 168 (249)
+++... ..++..... ..+....+|.+.+|..+... ..++..+.++|||||.|++.+ |
T Consensus 81 ~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~D~v~~~l--------------~~~l~~i~rvLkpgG~lv~~~~p~~ 141 (232)
T 3opn_A 81 ERVVVMEQFNFRNAVL-----ADFEQGRPSFTSIDVSFISL--------------DLILPPLYEILEKNGEVAALIKPQF 141 (232)
T ss_dssp TTEEEECSCCGGGCCG-----GGCCSCCCSEEEECCSSSCG--------------GGTHHHHHHHSCTTCEEEEEECHHH
T ss_pred ccccccccceEEEeCH-----hHcCcCCCCEEEEEEEhhhH--------------HHHHHHHHHhccCCCEEEEEECccc
Confidence 222111 112211100 11222236777777654321 246888999999999999853 1
Q ss_pred cCC-----------C-------HHHHHHHHhc-CCCeeEE-ecCCCCCCCCceEEEEEee
Q 025715 169 RGK-----------D-------TSLLYCQLKL-FFPVVTF-AKPKSSRNSSIEAFAVCEN 208 (249)
Q Consensus 169 ~~~-----------~-------~~~l~~~l~~-~f~~v~~-~kP~~sr~~s~E~y~v~~g 208 (249)
... + ..++..++.. -|..+.+ ..|......+.|..+.++.
T Consensus 142 e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 142 EAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp HSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTTTBCCEEEEEEE
T ss_pred ccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCCCCHHHHHHHhh
Confidence 110 0 1133333433 2655544 3555556667776666554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=100.11 Aligned_cols=110 Identities=17% Similarity=0.064 Sum_probs=82.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++..+ ..+|+++|+++.. .+++++++++|+.+...
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 104 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMP-------------NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD- 104 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCT-------------TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-
Confidence 6789999999999999999998753 5799999999842 23678899999865321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-C
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-F 184 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f 184 (249)
...+||+|++++... + ....+..+.++|+|||.+++..........+...++.. |
T Consensus 105 -------~~~~~D~i~~~~~~~-------~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 105 -------DLPDPDRVFIGGSGG-------M-------LEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp -------TSCCCSEEEESCCTT-------C-------HHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred -------cCCCCCEEEECCCCc-------C-------HHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 125799999987532 1 13578889999999999999766555555666666543 5
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.7e-12 Score=105.11 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=78.2
Q ss_pred hhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---CCCceEeecCCCChhhHHH
Q 025715 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 34 ~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---~~~v~~~~gDi~~~~~~~~ 110 (249)
.....++++.+|||+|||+|.++..+++. + .+|+|+|+++... ..+++++.+|+.+.
T Consensus 34 ~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~----- 93 (240)
T 3dli_A 34 RYIPYFKGCRRVLDIGCGRGEFLELCKEE-G--------------IESIGVDINEDMIKFCEGKFNVVKSDAIEY----- 93 (240)
T ss_dssp GGGGGTTTCSCEEEETCTTTHHHHHHHHH-T--------------CCEEEECSCHHHHHHHHTTSEEECSCHHHH-----
T ss_pred HHHhhhcCCCeEEEEeCCCCHHHHHHHhC-C--------------CcEEEEECCHHHHHHHHhhcceeeccHHHH-----
Confidence 33445578899999999999999988876 3 5899999997431 13377888887542
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
...+.+++||+|++......... .+ ....+..+.++|||||.+++.+.....
T Consensus 94 -~~~~~~~~fD~i~~~~~l~~~~~--~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (240)
T 3dli_A 94 -LKSLPDKYLDGVMISHFVEHLDP--ER-------LFELLSLCYSKMKYSSYIVIESPNPTS 145 (240)
T ss_dssp -HHTSCTTCBSEEEEESCGGGSCG--GG-------HHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred -hhhcCCCCeeEEEECCchhhCCc--HH-------HHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 12356689999999865543221 11 235788889999999999998765443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-12 Score=104.03 Aligned_cols=98 Identities=22% Similarity=0.209 Sum_probs=72.7
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
+++|.+|||+|||||.++..+++..+ .++|+|+|+++.. ...++.++.+|+.++...
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-------------~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~- 120 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-------------EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY- 120 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-------------TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-------------CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhh-
Confidence 36889999999999999999998864 4799999999831 135788888998875210
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+. ++||+|++|... .+. ...++..+.++|||||.|++.+
T Consensus 121 ---~~~~-~~fD~V~~~~~~-------~~~------~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 121 ---SGIV-EKVDLIYQDIAQ-------KNQ------IEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp ---TTTC-CCEEEEEECCCS-------TTH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cccc-cceeEEEEeccC-------hhH------HHHHHHHHHHHhCCCCEEEEEE
Confidence 0123 689999998521 111 1234778899999999999875
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=104.17 Aligned_cols=96 Identities=20% Similarity=0.061 Sum_probs=73.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..+++... ..|+|+|+++.. ...+++++++|+.+.+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----- 103 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGA--------------KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA----- 103 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC--------------SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCC-----
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCC--------------CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCC-----
Confidence 3678999999999999999987632 499999999732 1357889999987643
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+..++||+|++....... .+. ..++..+.++|||||.+++.+.
T Consensus 104 ---~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 104 ---IEPDAYNVVLSSLALHYI----ASF-------DDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp ---CCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CCCCCeEEEEEchhhhhh----hhH-------HHHHHHHHHHcCCCcEEEEEeC
Confidence 345799999998754332 121 3578889999999999999743
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=102.98 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=82.2
Q ss_pred chhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC
Q 025715 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI 92 (249)
Q Consensus 22 ~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~ 92 (249)
+++...++.+..+.+. ++++.+|||+|||+|.++..+++..+ +.++|+|+|+++.. ..
T Consensus 59 ~~~~~~~~~~~l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~g------------~~~~v~gvD~s~~~i~~~~~~a~~~ 125 (233)
T 2ipx_A 59 RSKLAAAILGGVDQIH-IKPGAKVLYLGAASGTTVSHVSDIVG------------PDGLVYAVEFSHRSGRDLINLAKKR 125 (233)
T ss_dssp TCHHHHHHHTTCSCCC-CCTTCEEEEECCTTSHHHHHHHHHHC------------TTCEEEEECCCHHHHHHHHHHHHHC
T ss_pred chhHHHHHHhHHheec-CCCCCEEEEEcccCCHHHHHHHHHhC------------CCcEEEEEECCHHHHHHHHHHhhcc
Confidence 4444555554333333 46789999999999999999999874 35799999999631 12
Q ss_pred CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 93 ~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++++++++|+.+.... .+..++||+|++|... .+. ....+..+.++|||||.+++.+.
T Consensus 126 ~~v~~~~~d~~~~~~~-----~~~~~~~D~V~~~~~~-------~~~------~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 126 TNIIPVIEDARHPHKY-----RMLIAMVDVIFADVAQ-------PDQ------TRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp TTEEEECSCTTCGGGG-----GGGCCCEEEEEECCCC-------TTH------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeEEEEcccCChhhh-----cccCCcEEEEEEcCCC-------ccH------HHHHHHHHHHHcCCCeEEEEEEc
Confidence 6889999999875311 1124689999998641 121 12346678999999999999655
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=98.37 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=72.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++.+ + ..+|+|+|+++.. .+++++++++|+.+..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 106 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-G-------------AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV-- 106 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T-------------CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH--
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH--
Confidence 36789999999999999987764 2 3689999999732 1357889999986532
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH--hccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH--VLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~--~Lk~gG~lv~k~~~ 169 (249)
..+..++||+|++|++.... . ......+..+.+ +|+|||.+++....
T Consensus 107 ----~~~~~~~fD~i~~~~p~~~~------~----~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 107 ----AAGTTSPVDLVLADPPYNVD------S----ADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp ----HHCCSSCCSEEEECCCTTSC------H----HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred ----hhccCCCccEEEECCCCCcc------h----hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 22445789999999753321 1 112345666777 99999999997654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=109.30 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=78.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C-----------C--CCceEee
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-----------I--EGVIQVQ 99 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~-----------~--~~v~~~~ 99 (249)
..++.+|||+|||+|.++..+++..+ +.++|+|+|+++.. . . +++++++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~ 148 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVG------------EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHT------------TTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEE
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEE
Confidence 35789999999999999999999875 35799999999731 0 1 5789999
Q ss_pred cCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 100 gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+|+.+..... ...+.+++||+|+++...... .+. ..++..+.++|||||.|++..+
T Consensus 149 ~d~~~l~~~~--~~~~~~~~fD~V~~~~~l~~~----~d~-------~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 149 GFIENLATAE--PEGVPDSSVDIVISNCVCNLS----TNK-------LALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp SCTTCGGGCB--SCCCCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccHHHhhhcc--cCCCCCCCEEEEEEccchhcC----CCH-------HHHHHHHHHHcCCCCEEEEEEe
Confidence 9998752100 001356799999998765432 121 3578889999999999998654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=99.80 Aligned_cols=120 Identities=14% Similarity=0.060 Sum_probs=89.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++..+ +..+|+++|+++.. .+++++++++|+.+.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-- 101 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVG------------EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-- 101 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHT------------TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS--
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhC------------CCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC--
Confidence 5788999999999999999998874 35799999999732 2357899999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC------------CHHHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK------------DTSLL 176 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~------------~~~~l 176 (249)
+.+++||+|++....... .+. ..++..+.++|+|||.+++..+... ...++
T Consensus 102 ------~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (219)
T 3dh0_A 102 ------LPDNTVDFIFMAFTFHEL----SEP-------LKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEV 164 (219)
T ss_dssp ------SCSSCEEEEEEESCGGGC----SSH-------HHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHH
T ss_pred ------CCCCCeeEEEeehhhhhc----CCH-------HHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHH
Confidence 355789999998654332 121 3578888999999999999765321 24566
Q ss_pred HHHHhcC-CCeeEEe
Q 025715 177 YCQLKLF-FPVVTFA 190 (249)
Q Consensus 177 ~~~l~~~-f~~v~~~ 190 (249)
...++.. |+.+...
T Consensus 165 ~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 165 GLILEDAGIRVGRVV 179 (219)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCEEEEEE
Confidence 6766654 8777664
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=106.32 Aligned_cols=113 Identities=15% Similarity=0.018 Sum_probs=82.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~ 106 (249)
+++|.+|||+|||+|+++..+++... .+|+|+|+++.. .+. +++++++|+.+..
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~--------------~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~ 188 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGK--------------AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP 188 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC--------------CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCC--------------CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc
Confidence 36789999999999999999998743 379999999842 133 3789999998753
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC------CCHHHHHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG------KDTSLLYCQL 180 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~------~~~~~l~~~l 180 (249)
..++||+|++|+.... ...+..+.++|+|||.+++..+.+ .....+...+
T Consensus 189 ---------~~~~fD~Vi~~~p~~~---------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~ 244 (278)
T 2frn_A 189 ---------GENIADRILMGYVVRT---------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRIT 244 (278)
T ss_dssp ---------CCSCEEEEEECCCSSG---------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHH
T ss_pred ---------ccCCccEEEECCchhH---------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHH
Confidence 2578999999875321 135677899999999999977752 3345565555
Q ss_pred hcCCCeeEE
Q 025715 181 KLFFPVVTF 189 (249)
Q Consensus 181 ~~~f~~v~~ 189 (249)
+..-..+..
T Consensus 245 ~~~G~~~~~ 253 (278)
T 2frn_A 245 KEYGYDVEK 253 (278)
T ss_dssp HHTTCEEEE
T ss_pred HHcCCeeEE
Confidence 554333333
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=99.86 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=79.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..++++ + ++|+|+|+++.. .++ +++++++|+.+...
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 118 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA-G--------------GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA 118 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT
T ss_pred CCCCEEEEecCCCCHHHHHHHHc-C--------------CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc
Confidence 57889999999999999999876 4 799999999842 234 78899999876210
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
...+||+|++++.. + .. ++..+.++|||||.+++.....++...+...++..
T Consensus 119 --------~~~~~D~v~~~~~~--------~-------~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 170 (204)
T 3njr_A 119 --------DLPLPEAVFIGGGG--------S-------QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH 170 (204)
T ss_dssp --------TSCCCSEEEECSCC--------C-------HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred --------cCCCCCEEEECCcc--------c-------HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence 12479999997632 1 12 57788999999999999877666666666666543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=102.66 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=76.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..+++..+ .+|+|+|+++.. ..++++++++|+.+.+
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---- 115 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYG--------------AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE---- 115 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC----
Confidence 6788999999999999999998764 699999999731 1267899999998753
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|++....... .. ......+..+.++|||||.+++..+
T Consensus 116 ----~~~~~fD~v~~~~~l~~~-----~~----~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 116 ----FPENNFDLIYSRDAILAL-----SL----ENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp ----CCTTCEEEEEEESCGGGS-----CH----HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----CCCCcEEEEeHHHHHHhc-----Ch----HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 346799999997654332 11 1124578889999999999999765
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=104.11 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=84.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC-ceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~-v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+++ ++++++|+.+.
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~------------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 157 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVG------------PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG- 157 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC------------TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhC------------CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-
Confidence 36789999999999999999999865 45899999999732 2344 88999998753
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC---
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF--- 183 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~--- 183 (249)
+..++||+|++|+... ...+..+.++|+|||.+++.........++...++..
T Consensus 158 --------~~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 213 (255)
T 3mb5_A 158 --------IEEENVDHVILDLPQP----------------ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDY 213 (255)
T ss_dssp --------CCCCSEEEEEECSSCG----------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGG
T ss_pred --------cCCCCcCEEEECCCCH----------------HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3557899999986321 1357788999999999998654434445555555543
Q ss_pred CCeeEEe
Q 025715 184 FPVVTFA 190 (249)
Q Consensus 184 f~~v~~~ 190 (249)
|..+..+
T Consensus 214 f~~~~~~ 220 (255)
T 3mb5_A 214 FMKPRTI 220 (255)
T ss_dssp BSCCEEE
T ss_pred ccccEEE
Confidence 7666654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-11 Score=104.09 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=77.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~ 106 (249)
++++.+|||+|||+|.++..+++..+ .+|+|+|+++.. .++ +++++.+|+.+
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-- 133 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD--------------VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-- 133 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH--
Confidence 36889999999999999999998865 689999999732 122 68889999865
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCC----CcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLH----DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~----~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+ +++||+|++.......... ..+. ....+..+.++|||||.+++..+....
T Consensus 134 --------~-~~~fD~v~~~~~~~~~~d~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 134 --------F-DEPVDRIVSLGAFEHFADGAGDAGFER------YDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp --------C-CCCCSEEEEESCGGGTTCCSSCCCTTH------HHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred --------c-CCCccEEEEcchHHhcCccccccchhH------HHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 2 4789999998755432111 0111 235788899999999999998775444
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=102.14 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=76.5
Q ss_pred cCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCC
Q 025715 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDIT 103 (249)
Q Consensus 36 ~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~ 103 (249)
..-+.++.+|||+|||+|.++..+++..+ ++|+|+|+++.. .++ +++++++|+.
T Consensus 41 l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 106 (257)
T 3f4k_A 41 INELTDDAKIADIGCGTGGQTLFLADYVK--------------GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106 (257)
T ss_dssp SCCCCTTCEEEEETCTTSHHHHHHHHHCC--------------SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HhcCCCCCeEEEeCCCCCHHHHHHHHhCC--------------CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 33346788999999999999999998764 599999999832 122 3889999997
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+ +.+++||+|++....... +. ..++..+.++|||||.+++...
T Consensus 107 ~~~--------~~~~~fD~v~~~~~l~~~-----~~-------~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 107 NLP--------FQNEELDLIWSEGAIYNI-----GF-------ERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp SCS--------SCTTCEEEEEEESCSCCC-----CH-------HHHHHHHHTTEEEEEEEEEEEE
T ss_pred hCC--------CCCCCEEEEEecChHhhc-----CH-------HHHHHHHHHHcCCCcEEEEEEe
Confidence 753 345799999998765432 21 2468889999999999998763
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-10 Score=95.81 Aligned_cols=103 Identities=20% Similarity=0.142 Sum_probs=77.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
..++.+|||+|||+|.++..+++..+ ..+|+++|+++.. ...+++++++|+.+.+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--- 105 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYP-------------EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD--- 105 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC---
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC---
Confidence 45789999999999999999998863 4799999999732 1237889999998754
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+. ++||+|++....... +... ...++..+.++|||||.+++..+....
T Consensus 106 -----~~-~~fD~v~~~~~l~~~-----~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 106 -----FE-EKYDMVVSALSIHHL-----EDED----KKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp -----CC-SCEEEEEEESCGGGS-----CHHH----HHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred -----CC-CCceEEEEeCccccC-----CHHH----HHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 23 789999998654322 2111 134688889999999999997765433
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=92.62 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=89.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CCCCceEeecCCCChhhHHHHHHhcCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
.++.+|||+|||+|.++..++++ . .|+|+|+++.. ..++++++++|+.+. +..
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~---------------~-~v~gvD~s~~~~~~~~~~~~~~~d~~~~---------~~~ 76 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR---------------N-TVVSTDLNIRALESHRGGNLVRADLLCS---------INQ 76 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT---------------S-EEEEEESCHHHHHTCSSSCEEECSTTTT---------BCG
T ss_pred CCCCeEEEeccCccHHHHHHHhc---------------C-cEEEEECCHHHHhcccCCeEEECChhhh---------ccc
Confidence 35679999999999999888753 2 89999999843 246788999999873 234
Q ss_pred CcccEEEeCCCCCCCCCCC--cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeEEecCCC
Q 025715 118 CKADLVVCDGAPDVTGLHD--MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTFAKPKS 194 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~--~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~~~kP~~ 194 (249)
++||+|++|++........ ..... ....+..+.+.| |||.+++.........++...++.. |+.+.+.+-.
T Consensus 77 ~~fD~i~~n~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~- 150 (170)
T 3q87_B 77 ESVDVVVFNPPYVPDTDDPIIGGGYL----GREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRK- 150 (170)
T ss_dssp GGCSEEEECCCCBTTCCCTTTBCCGG----GCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEE-
T ss_pred CCCCEEEECCCCccCCccccccCCcc----hHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeec-
Confidence 7899999997654321110 00000 012345556666 9999999776666777777777654 7766655322
Q ss_pred CCCCCceEEEEEeecc
Q 025715 195 SRNSSIEAFAVCENYF 210 (249)
Q Consensus 195 sr~~s~E~y~v~~g~~ 210 (249)
...|..++.+.++
T Consensus 151 ---~~~e~~~~~~~~~ 163 (170)
T 3q87_B 151 ---ILGETVYIIKGEK 163 (170)
T ss_dssp ---CSSSEEEEEEEEC
T ss_pred ---cCCceEEEEEEec
Confidence 2234555555544
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.21 E-value=7e-11 Score=97.67 Aligned_cols=129 Identities=10% Similarity=-0.001 Sum_probs=84.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++..+ ...|+|+|+++.. .+++++++++|+.+..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-- 104 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP-------------DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT-- 104 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG--
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC-------------CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHH--
Confidence 4678999999999999999998764 5799999999732 2468899999998743
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc-CCCee
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVV 187 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~-~f~~v 187 (249)
+.+..++||+|+++.+..+.. ..+....-.....+..+.++|+|||.+++.+-.......+...+.. -|..+
T Consensus 105 ----~~~~~~~~D~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 177 (214)
T 1yzh_A 105 ----DYFEDGEIDRLYLNFSDPWPK---KRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 177 (214)
T ss_dssp ----GTSCTTCCSEEEEESCCCCCS---GGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred ----hhcCCCCCCEEEEECCCCccc---cchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence 124567899999986422211 0000000012357888899999999999865322222344444443 25554
Q ss_pred EEe
Q 025715 188 TFA 190 (249)
Q Consensus 188 ~~~ 190 (249)
...
T Consensus 178 ~~~ 180 (214)
T 1yzh_A 178 GVW 180 (214)
T ss_dssp EEE
T ss_pred ecc
Confidence 443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=97.27 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=76.5
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEe
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQV 98 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~ 98 (249)
.+.+... +.++.+|||+|||+|.++..+++..+ ..|+|+|+++.. .+ +++++.
T Consensus 27 ~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~ 91 (256)
T 1nkv_A 27 TLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG--------------ITGTGIDMSSLFTAQAKRRAEELGVSERVHFI 91 (256)
T ss_dssp HHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcC--------------CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE
Confidence 3344443 46889999999999999999998764 689999999732 12 368999
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
++|+.+.. + +++||+|++........ + ...++..+.++|||||.+++..
T Consensus 92 ~~d~~~~~--------~-~~~fD~V~~~~~~~~~~----~-------~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 92 HNDAAGYV--------A-NEKCDVAACVGATWIAG----G-------FAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp ESCCTTCC--------C-SSCEEEEEEESCGGGTS----S-------SHHHHHHHTTSEEEEEEEEEEE
T ss_pred ECChHhCC--------c-CCCCCEEEECCChHhcC----C-------HHHHHHHHHHHcCCCeEEEEec
Confidence 99998753 2 47899999966543221 1 1356888999999999999864
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.2e-11 Score=94.38 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=78.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++..+ ..+|+++|+++.. .++ ++ ++++|..+.-
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~- 88 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTP-------------QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF- 88 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSS-------------SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG-
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCC-------------CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh-
Confidence 6788999999999999999988763 4799999999832 133 56 7788875421
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
. ...++||+|+++..... ...+..+.++|+|||.+++..+..+....+...++.+
T Consensus 89 -----~-~~~~~~D~i~~~~~~~~---------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 89 -----D-DVPDNPDVIFIGGGLTA---------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQF 143 (178)
T ss_dssp -----G-GCCSCCSEEEECC-TTC---------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred -----h-ccCCCCCEEEECCcccH---------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHc
Confidence 0 11268999999865432 1367788999999999998776555555565555544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-11 Score=96.81 Aligned_cols=143 Identities=14% Similarity=0.043 Sum_probs=95.4
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHH
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~ 112 (249)
.+.++.+|||+|||+|.++..+++. + ..|+++|+++... ..++.+..+|+.+.+
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~------ 98 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA-G--------------FDVDATDGSPELAAEASRRLGRPVRTMLFHQLD------ 98 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC------
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc-C--------------CeEEEECCCHHHHHHHHHhcCCceEEeeeccCC------
Confidence 3467899999999999999999875 3 6999999997421 126677888887643
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC--------------CCHHHHHH
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--------------KDTSLLYC 178 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~--------------~~~~~l~~ 178 (249)
..++||+|++....... .. +-...++..+.++|||||.+++.+... .+..++..
T Consensus 99 ---~~~~fD~v~~~~~l~~~-----~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
T 3e23_A 99 ---AIDAYDAVWAHACLLHV-----PR----DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRA 166 (211)
T ss_dssp ---CCSCEEEEEECSCGGGS-----CH----HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHH
T ss_pred ---CCCcEEEEEecCchhhc-----CH----HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHH
Confidence 35789999998654321 11 112457888999999999999976532 24566777
Q ss_pred HHhc-C-CCeeEEecCCCCCC-CCceEEEEEeeccCCC
Q 025715 179 QLKL-F-FPVVTFAKPKSSRN-SSIEAFAVCENYFPPE 213 (249)
Q Consensus 179 ~l~~-~-f~~v~~~kP~~sr~-~s~E~y~v~~g~~~~~ 213 (249)
+++. - |+.+.+........ ...+.++.+...+.+.
T Consensus 167 ~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~ 204 (211)
T 3e23_A 167 RYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPEL 204 (211)
T ss_dssp HHHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC
T ss_pred HHHhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCcc
Confidence 7765 3 88777653222222 2234455555544443
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-10 Score=94.75 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=83.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..+++.. ..|+|+|+++.. ..++++++++|+.+..
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---- 110 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---------------KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS---- 110 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---------------EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC----
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC----
Confidence 567899999999999999998763 589999999732 2347899999998753
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec---------CCCHHHHHHHHh
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR---------GKDTSLLYCQLK 181 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---------~~~~~~l~~~l~ 181 (249)
..++||+|++....... .+. .....++..+.++|||||.+++.+.. ......+...+.
T Consensus 111 -----~~~~fD~v~~~~~l~~~----~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (216)
T 3ofk_A 111 -----TAELFDLIVVAEVLYYL----EDM----TQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILT 177 (216)
T ss_dssp -----CSCCEEEEEEESCGGGS----SSH----HHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHH
T ss_pred -----CCCCccEEEEccHHHhC----CCH----HHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHH
Confidence 35789999998654322 121 11245788899999999999986532 123344555555
Q ss_pred cCCCeeEEe
Q 025715 182 LFFPVVTFA 190 (249)
Q Consensus 182 ~~f~~v~~~ 190 (249)
..+..+..+
T Consensus 178 ~~~~~~e~~ 186 (216)
T 3ofk_A 178 EALTEVERV 186 (216)
T ss_dssp HHSEEEEEE
T ss_pred hhccceEEE
Confidence 445555433
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=101.72 Aligned_cols=118 Identities=9% Similarity=-0.012 Sum_probs=82.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C--------------------
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------------------- 91 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~-------------------- 91 (249)
.++.+|||+|||+|..+..++++ + ..|+|||+++.. .
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~-G--------------~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR-G--------------HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS 131 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT-T--------------CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence 47889999999999999999875 3 599999999731 1
Q ss_pred CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec--
Q 025715 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-- 169 (249)
Q Consensus 92 ~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~-- 169 (249)
..+++++++|+.+.+. -..++||+|++.+++.... ..+ ....+..+.++|||||.|++.++.
T Consensus 132 ~~~i~~~~~D~~~l~~-------~~~~~FD~V~~~~~l~~l~--~~~-------~~~~l~~~~~~LkpGG~l~l~~~~~~ 195 (252)
T 2gb4_A 132 SGSISLYCCSIFDLPR-------ANIGKFDRIWDRGALVAIN--PGD-------HDRYADIILSLLRKEFQYLVAVLSYD 195 (252)
T ss_dssp TSSEEEEESCTTTGGG-------GCCCCEEEEEESSSTTTSC--GGG-------HHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred CCceEEEECccccCCc-------ccCCCEEEEEEhhhhhhCC--HHH-------HHHHHHHHHHHcCCCeEEEEEEEecC
Confidence 1468899999988642 1126899999877554321 111 134678889999999999754431
Q ss_pred ---------CCCHHHHHHHHhcCCCeeE
Q 025715 170 ---------GKDTSLLYCQLKLFFPVVT 188 (249)
Q Consensus 170 ---------~~~~~~l~~~l~~~f~~v~ 188 (249)
.....++...+...|+.+.
T Consensus 196 ~~~~~g~~~~~~~~el~~~l~~~f~v~~ 223 (252)
T 2gb4_A 196 PTKHAGPPFYVPSAELKRLFGTKCSMQC 223 (252)
T ss_dssp TTSCCCSSCCCCHHHHHHHHTTTEEEEE
T ss_pred CccCCCCCCCCCHHHHHHHhhCCeEEEE
Confidence 1234567777765565443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.8e-11 Score=96.75 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=90.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCCChhhHHHHHHh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.++.+|||+|||+|.++..+++. + .+|+|+|+++.. ...++.+..+|+.+.... ..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ 111 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR-G--------------IEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEA----KV 111 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT-T--------------CEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTT----CS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC-C--------------CEEEEEcCCHHHHHHHHHhcccccchhhHHhhccc----cc
Confidence 45689999999999999998875 3 589999999742 124566777776543100 01
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC------------------------
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG------------------------ 170 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~------------------------ 170 (249)
..+.+||+|++..... ..+. ..++..+.++|||||.+++.++..
T Consensus 112 ~~~~~fD~v~~~~~l~---~~~~---------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (227)
T 3e8s_A 112 PVGKDYDLICANFALL---HQDI---------IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDW 179 (227)
T ss_dssp CCCCCEEEEEEESCCC---SSCC---------HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCC
T ss_pred ccCCCccEEEECchhh---hhhH---------HHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCc
Confidence 2335699999987554 1111 246788899999999999976521
Q ss_pred -------CCHHHHHHHHhcC-CCeeEEecCCCCCCCC-ceEEEEEe
Q 025715 171 -------KDTSLLYCQLKLF-FPVVTFAKPKSSRNSS-IEAFAVCE 207 (249)
Q Consensus 171 -------~~~~~l~~~l~~~-f~~v~~~kP~~sr~~s-~E~y~v~~ 207 (249)
....++..+++.. |+.+.+..|....... ...+++++
T Consensus 180 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~ 225 (227)
T 3e8s_A 180 QPMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAE 225 (227)
T ss_dssp CCEEEEECCHHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEE
T ss_pred ccceEEEecHHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEee
Confidence 1345676666654 8877776554333211 23566655
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-10 Score=90.32 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=88.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+.++.+|||+|||+|.++..+++. + ..|+++|+++.. ..++++++++|+.+.+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~------ 102 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-G--------------HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQ------ 102 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSC------
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-C--------------CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCC------
Confidence 468899999999999999998875 3 589999999742 2457889999998743
Q ss_pred HhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC--CCHHHHHHHHhcC-CCeeE
Q 025715 113 RHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQLKLF-FPVVT 188 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~--~~~~~l~~~l~~~-f~~v~ 188 (249)
+..++||+|++++. ... .... .....+..+.++|+|||.+++..... ....++...+... |+.+.
T Consensus 103 --~~~~~~D~i~~~~~~~~~-----~~~~----~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 103 --ISETDFDLIVSAGNVMGF-----LAED----GREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELEN 171 (195)
T ss_dssp --CCCCCEEEEEECCCCGGG-----SCHH----HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEE
T ss_pred --CCCCceeEEEECCcHHhh-----cChH----HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEee
Confidence 34578999999742 211 1111 12457788899999999999976643 3566676666543 77666
Q ss_pred EecCC
Q 025715 189 FAKPK 193 (249)
Q Consensus 189 ~~kP~ 193 (249)
.....
T Consensus 172 ~~~~~ 176 (195)
T 3cgg_A 172 AFESW 176 (195)
T ss_dssp EESST
T ss_pred eeccc
Confidence 65443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-11 Score=101.26 Aligned_cols=105 Identities=22% Similarity=0.266 Sum_probs=77.1
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceE
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQ 97 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~ 97 (249)
+..+.+... ..++.+|||+|||+|.++..++++. .+|+++|+++.. .++++.+
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~---------------~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~ 89 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV---------------KKVVAFDLTEDILKVARAFIEGNGHQQVEY 89 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhC---------------CEEEEEeCCHHHHHHHHHHHHhcCCCceEE
Confidence 334444443 2578899999999999999888753 499999999732 2357889
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+++|+.+.+ +.+++||+|++....... .+. ..++..+.++|||||.|++...
T Consensus 90 ~~~d~~~l~--------~~~~~fD~V~~~~~l~~~----~d~-------~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 90 VQGDAEQMP--------FTDERFHIVTCRIAAHHF----PNP-------ASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp EECCC-CCC--------SCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecHHhCC--------CCCCCEEEEEEhhhhHhc----CCH-------HHHHHHHHHHcCCCCEEEEEEc
Confidence 999998753 356799999998654332 122 2578889999999999998654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-11 Score=98.01 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=84.6
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+.++.+|||+|||+|.++..+++. + ..+|+++|+++.. ...+++++++|+.+.
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-- 121 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-G-------------AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-- 121 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--
Confidence 357899999999999999998764 3 3699999999732 233588999998763
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPV 186 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~ 186 (249)
..++||+|+++... ......+..+.++|+|||.+++..+.......+...++.. |+.
T Consensus 122 --------~~~~fD~i~~~~~~--------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~ 179 (205)
T 3grz_A 122 --------VDGKFDLIVANILA--------------EILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQI 179 (205)
T ss_dssp --------CCSCEEEEEEESCH--------------HHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEE
T ss_pred --------CCCCceEEEECCcH--------------HHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCce
Confidence 24789999998632 1124568888999999999999767666666677666654 665
Q ss_pred eEE
Q 025715 187 VTF 189 (249)
Q Consensus 187 v~~ 189 (249)
+..
T Consensus 180 ~~~ 182 (205)
T 3grz_A 180 DLK 182 (205)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-11 Score=102.79 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=82.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+++|.+|||+|||||+++..++.+.. +++|+|+|+++.. .+.+++++++|+.+.
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~-------------ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l-- 184 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVY-------------GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI-- 184 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTT-------------CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHcc-------------CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC--
Confidence 47899999999999999876554432 4799999999832 236789999998763
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCH---HHHHHHHhcCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT---SLLYCQLKLFF 184 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~---~~l~~~l~~~f 184 (249)
++++||+|+++... .+. ..++..+.++|||||.|++........ ..+......-|
T Consensus 185 --------~d~~FDvV~~~a~~-------~d~-------~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~gf 242 (298)
T 3fpf_A 185 --------DGLEFDVLMVAALA-------EPK-------RRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGF 242 (298)
T ss_dssp --------GGCCCSEEEECTTC-------SCH-------HHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGTTE
T ss_pred --------CCCCcCEEEECCCc-------cCH-------HHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhhhh
Confidence 24689999986531 121 257888999999999999876432110 00001122357
Q ss_pred CeeEEecCCC
Q 025715 185 PVVTFAKPKS 194 (249)
Q Consensus 185 ~~v~~~kP~~ 194 (249)
+....+.|..
T Consensus 243 ~~~~~~~p~~ 252 (298)
T 3fpf_A 243 RRAGVVLPSG 252 (298)
T ss_dssp EEEEEECCCT
T ss_pred hheeEECCCC
Confidence 7777777754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=95.31 Aligned_cols=107 Identities=17% Similarity=0.069 Sum_probs=80.1
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceEeecCCC
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDIT 103 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~~~gDi~ 103 (249)
.+.+.+.-+.++.+|||+|||+|.++..+++. + .+|+++|+++.. ..++++++++|+.
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~ 100 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL-A--------------DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLF 100 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-S--------------SEEEEEESCHHHHHHHGGGCCTTEEEEECCTT
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-C--------------CeEEEEeCCHHHHHHHHhcCCCCeEEEecccc
Confidence 34444444567789999999999999999887 4 699999999732 2367899999997
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+. +..++||+|++....... .. ......+..+.++|+|||.+++..+..
T Consensus 101 ~~---------~~~~~~D~v~~~~~l~~~-----~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 101 DW---------TPDRQWDAVFFAHWLAHV-----PD----DRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp SC---------CCSSCEEEEEEESCGGGS-----CH----HHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cC---------CCCCceeEEEEechhhcC-----CH----HHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 74 246799999997654321 21 112457888899999999999987754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=101.32 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=78.2
Q ss_pred hhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeec
Q 025715 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQG 100 (249)
Q Consensus 33 ~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~g 100 (249)
.+.+.-+.++.+|||+|||+|.++..++++.+ .+|+|+|+++.. .+ .+++++.+
T Consensus 109 ~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 174 (312)
T 3vc1_A 109 MDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG--------------SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC 174 (312)
T ss_dssp HTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHhccCCCCCEEEEecCCCCHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 33444346889999999999999999998754 699999999732 12 36899999
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
|+.+.+ +.+++||+|++....... + ....+..+.++|||||.+++...
T Consensus 175 d~~~~~--------~~~~~fD~V~~~~~l~~~-----~-------~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 175 NMLDTP--------FDKGAVTASWNNESTMYV-----D-------LHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp CTTSCC--------CCTTCEEEEEEESCGGGS-----C-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ChhcCC--------CCCCCEeEEEECCchhhC-----C-------HHHHHHHHHHHcCCCcEEEEEEc
Confidence 998753 345799999997654332 2 23578889999999999998765
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-11 Score=97.22 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..++...+ ..+|+++|+++.. .+++++++++|+.+..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 128 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP-------------EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC---
Confidence 478999999999999999998763 4799999999732 2346889999998742
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVT 188 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~ 188 (249)
..++||+|+++... + ....+..+.++|+|||.+++.. ......++..++. -|+.+.
T Consensus 129 ------~~~~~D~i~~~~~~--------~-------~~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~-g~~~~~ 184 (207)
T 1jsx_A 129 ------SEPPFDGVISRAFA--------S-------LNDMVSWCHHLPGEQGRFYALK-GQMPEDEIALLPE-EYQVES 184 (207)
T ss_dssp ------CCSCEEEEECSCSS--------S-------HHHHHHHHTTSEEEEEEEEEEE-SSCCHHHHHTSCT-TEEEEE
T ss_pred ------ccCCcCEEEEeccC--------C-------HHHHHHHHHHhcCCCcEEEEEe-CCCchHHHHHHhc-CCceee
Confidence 24689999986421 1 1256788899999999999843 3334444443333 354444
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7e-11 Score=100.76 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=76.6
Q ss_pred cCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCC
Q 025715 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDIT 103 (249)
Q Consensus 36 ~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~ 103 (249)
..-+.++.+|||+|||+|.++..+++. + .++|+|+|+++.. .+ ++++++++|+.
T Consensus 41 l~~~~~~~~vLDiGcG~G~~~~~la~~-~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 106 (267)
T 3kkz_A 41 IDNLTEKSLIADIGCGTGGQTMVLAGH-V-------------TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD 106 (267)
T ss_dssp CCCCCTTCEEEEETCTTCHHHHHHHTT-C-------------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred cccCCCCCEEEEeCCCCCHHHHHHHhc-c-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh
Confidence 333468899999999999999999876 3 3699999999842 12 45899999998
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+ +..++||+|++....... +. ..++..+.++|||||.+++...
T Consensus 107 ~~~--------~~~~~fD~i~~~~~~~~~-----~~-------~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 107 DLP--------FRNEELDLIWSEGAIYNI-----GF-------ERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp SCC--------CCTTCEEEEEESSCGGGT-----CH-------HHHHHHHGGGEEEEEEEEEEEE
T ss_pred hCC--------CCCCCEEEEEEcCCceec-----CH-------HHHHHHHHHHcCCCCEEEEEEe
Confidence 753 345789999998765432 21 2468889999999999998764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-11 Score=102.20 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=81.7
Q ss_pred hhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCc
Q 025715 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGV 95 (249)
Q Consensus 27 ~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v 95 (249)
-.+.++......+.++.+|||+|||+|.++..+++..+ ..+|+++|+++.. ..+++
T Consensus 23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 89 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNP-------------DAEITSIDISPESLEKARENTEKNGIKNV 89 (276)
T ss_dssp CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 34445544455567899999999999999999998753 5799999999732 23578
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+++.+|+.+.+ +.+++||+|++....... .+. ..++..+.++|||||.+++..
T Consensus 90 ~~~~~d~~~~~--------~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 90 KFLQANIFSLP--------FEDSSFDHIFVCFVLEHL----QSP-------EEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp EEEECCGGGCC--------SCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcccccCC--------CCCCCeeEEEEechhhhc----CCH-------HHHHHHHHHHcCCCcEEEEEE
Confidence 89999987643 345789999998754332 121 246788899999999999865
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=97.58 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=75.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.++.+|||+|||+|.++..+++. + .+|+|+|+++.. ...+++++++|+.+.+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---- 111 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-G--------------YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLP---- 111 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCS----
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCC----
Confidence 357899999999999999999876 3 689999999732 2357889999998753
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.+++||+|++....... .+. ..++..+.++|+|||.+++.++.
T Consensus 112 ----~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 112 ----FENEQFEAIMAINSLEWT----EEP-------LRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp ----SCTTCEEEEEEESCTTSS----SCH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ----CCCCCccEEEEcChHhhc----cCH-------HHHHHHHHHHhCCCeEEEEEEcC
Confidence 346799999997654432 122 24688889999999999997754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=96.59 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHH---hcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRK---LYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~---~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i 111 (249)
++.+|||+|||+|.++..+++. ++ +.++|+|+|+++... .++++++++|+.+....
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~------------~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l--- 145 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMG------------IDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTF--- 145 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTT------------CCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGG---
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcC------------CCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHH---
Confidence 4679999999999999999987 33 358999999998531 25789999999874210
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH-hccCCCEEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH-VLKEGGKFIAKI 167 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~-~Lk~gG~lv~k~ 167 (249)
..+...+||+|++|+.. .+ ...++..+.+ +|||||.|++..
T Consensus 146 -~~~~~~~fD~I~~d~~~-------~~-------~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 146 -EHLREMAHPLIFIDNAH-------AN-------TFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp -GGGSSSCSSEEEEESSC-------SS-------HHHHHHHHHHHTCCTTCEEEECS
T ss_pred -HhhccCCCCEEEECCch-------Hh-------HHHHHHHHHHhhCCCCCEEEEEe
Confidence 11233479999998741 11 1246777886 999999999853
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=104.58 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=77.3
Q ss_pred cCCCeEEEEcCC------CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--CCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAA------PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~g------pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+||||||| +|+++..+++... +.++|+|+|+++... .++++++++|+.+.+....+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~f------------P~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l 282 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFF------------PRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRI 282 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHC------------TTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhC------------CCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhh
Confidence 456899999999 7888887776653 358999999998653 36899999999997654444
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
... .++||+|++|+... ... ....+..+.++|||||.|++..+
T Consensus 283 ~~~--d~sFDlVisdgsH~------~~d------~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 283 ARR--YGPFDIVIDDGSHI------NAH------VRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp HHH--HCCEEEEEECSCCC------HHH------HHHHHHHHGGGEEEEEEEEEECG
T ss_pred hcc--cCCccEEEECCccc------chh------HHHHHHHHHHhcCCCeEEEEEec
Confidence 322 36899999987421 111 24578899999999999999743
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=97.25 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=73.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCC-CceEeecCCCChhhHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE-GVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~-~v~~~~gDi~~~~~~~~i~ 112 (249)
.++.+|||+|||+|.++..+++.. ..|+|+|+++.. ... +++++++|+.+.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~---------------~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~------- 98 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF---------------NDITCVEASEEAISHAQGRLKDGITYIHSRFEDA------- 98 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC---------------SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-------
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC---------------CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-------
Confidence 367899999999999999888652 489999999742 122 788999998763
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHH-HhccCCCEEEEEEecCCC
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVT-HVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~-~~Lk~gG~lv~k~~~~~~ 172 (249)
+.+++||+|++....... .+. ..++..+. ++|||||.+++.+.....
T Consensus 99 --~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 99 --QLPRRYDNIVLTHVLEHI----DDP-------VALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp --CCSSCEEEEEEESCGGGC----SSH-------HHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred --CcCCcccEEEEhhHHHhh----cCH-------HHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 245789999997654332 122 25788889 999999999998765443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-10 Score=95.38 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=73.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~ 112 (249)
.++.+|||+|||+|.++..++++ + ..|+|+|+++.. .. .+++++++|+.+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~------ 102 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA-G--------------RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFE------ 102 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT-T--------------CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCC------
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC-C--------------CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcC------
Confidence 47889999999999999999875 3 699999999832 12 37889999998754
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+. ++||+|++....... .... ...++..+.++|||||.+++...
T Consensus 103 --~~-~~fD~v~~~~~l~~~-----~~~~----~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 103 --VP-TSIDTIVSTYAFHHL-----TDDE----KNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp --CC-SCCSEEEEESCGGGS-----CHHH----HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred --CC-CCeEEEEECcchhcC-----ChHH----HHHHHHHHHHhcCCCCEEEEEec
Confidence 23 789999998654322 2111 12467888999999999999764
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-11 Score=98.90 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=75.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++..+ ...|+|+|+++.. .+++++++++|+.+..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-- 101 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNP-------------DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-- 101 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT-------------TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH--
T ss_pred CCCceEEEEecCCCHHHHHHHHHCC-------------CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH--
Confidence 4678999999999999999998763 5799999999732 2467899999997632
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+..++||.|+++.+..+.... .+. .++ ....+..+.++|||||.|++.+
T Consensus 102 ----~~~~~~~~d~v~~~~~~p~~~~~--~~~--~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 102 ----DVFEPGEVKRVYLNFSDPWPKKR--HEK--RRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp ----HHCCTTSCCEEEEESCCCCCSGG--GGG--GSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ----hhcCcCCcCEEEEECCCCCcCcc--ccc--cccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 23566789999886532221100 000 001 2356888899999999999865
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-10 Score=94.49 Aligned_cols=107 Identities=11% Similarity=0.058 Sum_probs=78.0
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHH
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+.++.+|||+|||+|.++..+++.. .+|+|+|+++.. ...+++++++|+.+.+...
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~---------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~ 117 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF---------------PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAA 117 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS---------------SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhC---------------CCEEEEECCHHHHHHHHHhCcccCceEEECccccccccc
Confidence 35788999999999999999998864 389999999732 2247899999999876433
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
.+.. ...||+|+++........ .+ ....+..+.++|||||.+++..+...
T Consensus 118 ~~~~---~~~~d~v~~~~~~~~~~~--~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 118 QIHS---EIGDANIYMRTGFHHIPV--EK-------RELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp HHHH---HHCSCEEEEESSSTTSCG--GG-------HHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred cccc---ccCccEEEEcchhhcCCH--HH-------HHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 2221 135999999875543211 11 13578888999999999888776543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=95.94 Aligned_cols=120 Identities=11% Similarity=0.017 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C--CCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~--~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..+++... ..|+++|+++.. . ..++.++++|+.+..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--- 141 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--------------REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--- 141 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--------------SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC---
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--------------CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC---
Confidence 588999999999999998876542 699999999732 0 124778889986643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC--------------CHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK--------------DTSL 175 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~--------------~~~~ 175 (249)
+..++||+|+++...... ... ....++..+.++|+|||.+++...... ...+
T Consensus 142 -----~~~~~fD~v~~~~~l~~~-----~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 207 (241)
T 2ex4_A 142 -----PEPDSYDVIWIQWVIGHL-----TDQ----HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDV 207 (241)
T ss_dssp -----CCSSCEEEEEEESCGGGS-----CHH----HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHH
T ss_pred -----CCCCCEEEEEEcchhhhC-----CHH----HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHH
Confidence 244689999998654321 111 124578888999999999998654211 3556
Q ss_pred HHHHHhcC-CCeeEEec
Q 025715 176 LYCQLKLF-FPVVTFAK 191 (249)
Q Consensus 176 l~~~l~~~-f~~v~~~k 191 (249)
+..+++.. |+.+....
T Consensus 208 ~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 208 VRRIICSAGLSLLAEER 224 (241)
T ss_dssp HHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHcCCeEEEeee
Confidence 66666654 88777653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=98.68 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=74.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..+++..+ .+|+|+|+++.. . .++++++.+|+.+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-- 125 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD--------------VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-- 125 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--
Confidence 36788999999999999999997765 599999999732 1 1468888999854
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
++ ++||+|++.......+.. + ....+..+.++|||||.+++..+..
T Consensus 126 --------~~-~~fD~v~~~~~l~~~~~~--~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 126 --------FD-EPVDRIVSIGAFEHFGHE--R-------YDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp --------CC-CCCSEEEEESCGGGTCTT--T-------HHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred --------CC-CCeeEEEEeCchhhcChH--H-------HHHHHHHHHHhcCCCCEEEEEEecC
Confidence 23 689999998755433211 1 1356888899999999999977643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=98.39 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=75.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++..+ .+|+++|+++.. .+ .+++++.+|+.+.+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 124 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARD--------------VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP- 124 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSC--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC--------------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-
Confidence 6789999999999999999988654 799999999732 12 36889999998753
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|++........ +. ...+..+.++|||||.+++..+
T Consensus 125 -------~~~~~fD~v~~~~~l~~~~----~~-------~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 125 -------FEDASFDAVWALESLHHMP----DR-------GRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp -------SCTTCEEEEEEESCTTTSS----CH-------HHHHHHHHTTEEEEEEEEEEEE
T ss_pred -------CCCCCccEEEEechhhhCC----CH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 3457899999976554321 21 2568889999999999998765
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=96.76 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=77.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+ .+++++++|+.+...
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~ 124 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQ------------PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP 124 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSC------------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCC------------CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH
Confidence 4678999999999999999998764 35899999999832 12 258889999754210
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
.+...+..++||+|++|+.... ... ....+..+ ++|||||.+++.....+....+...++..
T Consensus 125 --~~~~~~~~~~fD~V~~d~~~~~-----~~~------~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 186 (221)
T 3u81_A 125 --QLKKKYDVDTLDMVFLDHWKDR-----YLP------DTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGS 186 (221)
T ss_dssp --GTTTTSCCCCCSEEEECSCGGG-----HHH------HHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHC
T ss_pred --HHHHhcCCCceEEEEEcCCccc-----chH------HHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhC
Confidence 0000111268999999864221 110 11334445 99999999998655444455666655543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.6e-11 Score=100.82 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=81.7
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..+++.++ +..+|+++|+++.. ..++++++++|+.+.
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~------------~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~- 174 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALN------------GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF- 174 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHT------------TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcC------------CCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc-
Confidence 36789999999999999999998754 35799999998732 125688899998762
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 185 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~ 185 (249)
+.+++||+|++|... . ..++..+.++|||||.+++.+........+...++.. |.
T Consensus 175 --------~~~~~fD~Vi~~~~~-------~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 175 --------ISDQMYDAVIADIPD-------P---------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 230 (275)
T ss_dssp --------CCSCCEEEEEECCSC-------G---------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred --------CcCCCccEEEEcCcC-------H---------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence 345689999997531 1 1357788999999999998664333334455545433 54
Q ss_pred eeEE
Q 025715 186 VVTF 189 (249)
Q Consensus 186 ~v~~ 189 (249)
.+..
T Consensus 231 ~~~~ 234 (275)
T 1yb2_A 231 HLET 234 (275)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-11 Score=102.68 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=71.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+|.+|||+|||+|..+.++++..+ ..|++||+++.. .-.++.++.+|..+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--------------~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~---- 120 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--------------DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV---- 120 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--------------EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH----
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--------------cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh----
Confidence 6789999999999999988876543 589999999832 123466777876432
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+.+++||.|+.|..+......... ....++..+.++|||||.|++-
T Consensus 121 --~~~~~~~~FD~i~~D~~~~~~~~~~~~------~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 121 --APTLPDGHFDGILYDTYPLSEETWHTH------QFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp --GGGSCTTCEEEEEECCCCCBGGGTTTH------HHHHHHHTHHHHEEEEEEEEEC
T ss_pred --cccccccCCceEEEeeeecccchhhhc------chhhhhhhhhheeCCCCEEEEE
Confidence 223567889999999754332221111 1245788899999999999863
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=96.33 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=74.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
+.++.+|||+|||+|.++..+++..+ +.++|+|+|+++.. ..++++++++|+.+....
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~------------~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 137 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVG------------WEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEY- 137 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHC------------TTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGG-
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhC------------CCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchh-
Confidence 36788999999999999999998875 35799999999831 236889999999874311
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+ .++||+|++|... .+. ....+..+.++|||||.+++..
T Consensus 138 ---~~~-~~~~D~v~~~~~~-------~~~------~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 138 ---RAL-VPKVDVIFEDVAQ-------PTQ------AKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ---TTT-CCCEEEEEECCCS-------TTH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hcc-cCCceEEEECCCC-------HhH------HHHHHHHHHHhcCCCCEEEEEE
Confidence 012 3589999998641 121 1234778899999999999863
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-11 Score=97.87 Aligned_cols=97 Identities=12% Similarity=-0.063 Sum_probs=70.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C---------------CCCce
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~---------------~~~v~ 96 (249)
.++.+|||+|||+|..+..++++ + ..|+|+|+++.. . ..+++
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~-g--------------~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ-G--------------YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 85 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH-C--------------CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC-C--------------CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence 57789999999999999999876 4 699999999731 1 24789
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
++++|+.+.+.. ..++||+|++.+++... ... .....+..+.++|||||.+++.+
T Consensus 86 ~~~~d~~~l~~~-------~~~~fD~v~~~~~l~~l-----~~~----~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 86 IWCGDFFALTAR-------DIGHCAAFYDRAAMIAL-----PAD----MRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp EEEECCSSSTHH-------HHHSEEEEEEESCGGGS-----CHH----HHHHHHHHHHHHSCSEEEEEEEE
T ss_pred EEECccccCCcc-------cCCCEEEEEECcchhhC-----CHH----HHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999886521 01579999987654321 111 12356788999999999944433
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=93.12 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=73.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-----CCceEeecCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-----EGVIQVQGDI 102 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-----~~v~~~~gDi 102 (249)
++++.+|||+|||+|.++..+++. + .+|+++|+++.. .+ .++.++.+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 92 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-G--------------YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA 92 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-C--------------CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc
Confidence 368899999999999999999876 3 699999998731 01 1467889998
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+.+ +..++||+|++....... .+.. ....++..+.++|+|||.+++..+
T Consensus 93 ~~~~--------~~~~~~D~v~~~~~l~~~----~~~~----~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 93 SSLS--------FHDSSFDFAVMQAFLTSV----PDPK----ERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp TSCC--------SCTTCEEEEEEESCGGGC----CCHH----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccC--------CCCCceeEEEEcchhhcC----CCHH----HHHHHHHHHHHHcCCCeEEEEEEC
Confidence 8753 345789999997644321 1221 123578888999999999998755
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-10 Score=96.14 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=71.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++. + ..|+|+|+++.. ..++++++++|+.+.+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 106 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-F--------------GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFS------- 106 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-S--------------SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCC-------
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCC-------
Confidence 46789999999999999988765 2 589999999742 1458899999998753
Q ss_pred hcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+ +++||+|++.. ..... .. ......++..+.++|||||.|++.
T Consensus 107 -~-~~~fD~v~~~~~~l~~~-----~~---~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 107 -L-GRRFSAVTCMFSSIGHL-----AG---QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp -C-SCCEEEEEECTTGGGGS-----CH---HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred -c-cCCcCEEEEcCchhhhc-----CC---HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 47899999975 43321 11 112345788889999999999984
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=97.62 Aligned_cols=96 Identities=23% Similarity=0.280 Sum_probs=73.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++.. ..|+++|+++.. .+++++++++|+.+.+
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 82 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYV---------------QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-- 82 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC--
T ss_pred CCCCEEEEEccCcCHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC--
Confidence 678999999999999999888653 589999999732 1357889999987643
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.+++||+|++....... .+. ..++..+.++|||||.+++....
T Consensus 83 ------~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 83 ------FPDDSFDIITCRYAAHHF----SDV-------RKAVREVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp ------SCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------CCCCcEEEEEECCchhhc----cCH-------HHHHHHHHHHcCCCcEEEEEEcC
Confidence 345789999998654321 121 25688889999999999986553
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-11 Score=98.61 Aligned_cols=122 Identities=7% Similarity=-0.012 Sum_probs=80.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++..+ ...|+|+|+++.. .+.++.++++|+.+.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p-------------~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~--- 96 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRP-------------EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV--- 96 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCT-------------TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH---
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCC-------------CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH---
Confidence 4678999999999999999998764 5799999999732 246789999998652
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
+...+.++++|.|+++.+..+........ .-.....+..+.++|||||.|++.+-...-...+...+..
T Consensus 97 --l~~~~~~~~~d~v~~~~~~p~~~~~~~~r---r~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 97 --LHKMIPDNSLRMVQLFFPDPWHKARHNKR---RIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp --HHHHSCTTCEEEEEEESCCCCCSGGGGGG---SSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred --HHHHcCCCChheEEEeCCCCccchhhhhh---hhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 12235678999999875432211100000 0001246788899999999999865322223344454544
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-10 Score=99.92 Aligned_cols=123 Identities=13% Similarity=0.100 Sum_probs=87.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C---CCCceEeecCCCChhhHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~---~~~v~~~~gDi~~~~~~~~i 111 (249)
.+|||||||.|+.+..++++.+ ..+|++||+++.. . .++++++.+|..+.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p-------------~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~------ 151 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP-------------QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMV------ 151 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST-------------TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHH------
T ss_pred CEEEEEECCcCHHHHHHHHHCC-------------CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHH------
Confidence 3999999999999999998764 4699999999831 1 25788899987542
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC---HHHHHHHHhcCCCeeE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD---TSLLYCQLKLFFPVVT 188 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~---~~~l~~~l~~~f~~v~ 188 (249)
...+.+++||+|++|..... +.. .+. .....+..+.++|+|||.|++....... ...+...++..|..+.
T Consensus 152 l~~~~~~~fDvIi~D~~~~~-~~~--~~L----~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~ 224 (317)
T 3gjy_A 152 AESFTPASRDVIIRDVFAGA-ITP--QNF----TTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVA 224 (317)
T ss_dssp HHTCCTTCEEEEEECCSTTS-CCC--GGG----SBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEE
T ss_pred HhhccCCCCCEEEECCCCcc-ccc--hhh----hHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceE
Confidence 12234578999999974321 111 000 0134678889999999999998775443 3456777888899988
Q ss_pred Eec
Q 025715 189 FAK 191 (249)
Q Consensus 189 ~~k 191 (249)
++.
T Consensus 225 ~~~ 227 (317)
T 3gjy_A 225 VIA 227 (317)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=94.15 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=78.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
+.++.+|||+|||+|.++..+++... ..|+++|+++.. ..++++++++|+.+.+
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~--------------~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~--- 102 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGF--------------PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD--- 102 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTC--------------CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC---
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCC--------------CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC---
Confidence 36889999999999999999887632 389999999732 1257889999998743
Q ss_pred HHHHhcCCCcccEEEeCCCCCC-----CCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 110 VVIRHFDGCKADLVVCDGAPDV-----TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~-----~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
+.+++||+|++++.... ...+.... ........++..+.++|||||.+++..+...
T Consensus 103 -----~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 103 -----FPSASFDVVLEKGTLDALLAGERDPWTVSS-EGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp -----SCSSCEEEEEEESHHHHHTTTCSCTTSCCH-HHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred -----CCCCcccEEEECcchhhhcccccccccccc-chhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 34578999999764311 11122111 1122345678899999999999999776543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=99.08 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=75.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++ . ...|+|+|+++.. ..+++.+..+|+.+.+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~--~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 113 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ--S-------------GAEVLGTDNAATMIEKARQNYPHLHFDVADARNFR------- 113 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--T-------------TCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-------
T ss_pred CCCCEEEEecCCCCHHHHHHHh--C-------------CCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-------
Confidence 5778999999999999999987 2 3799999999742 1367889999998753
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+ +++||+|++....... .+. ..++..+.++|||||.+++.+.....
T Consensus 114 -~-~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~~~LkpgG~l~~~~~~~~~ 159 (279)
T 3ccf_A 114 -V-DKPLDAVFSNAMLHWV----KEP-------EAAIASIHQALKSGGRFVAEFGGKGN 159 (279)
T ss_dssp -C-SSCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEECTTT
T ss_pred -c-CCCcCEEEEcchhhhC----cCH-------HHHHHHHHHhcCCCcEEEEEecCCcc
Confidence 2 3689999998755432 122 24678889999999999997765433
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=99.64 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=75.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..+++..+ .+|+++|+++.. .+ ++++++.+|+.+.+
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFG--------------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC--------------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 46788999999999999999998764 699999999732 12 46889999998753
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|++........ +. ..++..+.++|||||.|++...
T Consensus 146 --------~~~~~fD~v~~~~~l~~~~----~~-------~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 146 --------CEDNSYDFIWSQDAFLHSP----DK-------LKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp --------SCTTCEEEEEEESCGGGCS----CH-------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------CCCCCEeEEEecchhhhcC----CH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 3557899999976543321 21 3578889999999999998765
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=100.34 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=75.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------CCCCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~~~~v~~~~gDi~~~~ 106 (249)
.++.+|||+|||+|.++..+++.+. ...+|+|+|+++.. ..++++++++|+.+.+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 102 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELK------------PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK 102 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSS------------CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC------------CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC
Confidence 5789999999999999999998763 25799999999832 1357899999998854
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
... ...+..++||+|++....... +. ...+..+.++|+|||.|++..
T Consensus 103 ~~~--~~~~~~~~fD~V~~~~~l~~~-----~~-------~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 103 FLG--ADSVDKQKIDMITAVECAHWF-----DF-------EKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp GGC--TTTTTSSCEEEEEEESCGGGS-----CH-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc--cccccCCCeeEEeHhhHHHHh-----CH-------HHHHHHHHHhcCCCcEEEEEe
Confidence 210 000112789999998754432 21 357888899999999999843
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=98.28 Aligned_cols=98 Identities=22% Similarity=0.273 Sum_probs=76.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..++++.+ ...|+++|+++.. ..++++++.+|+.+..
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~-------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 91 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYG-------------VNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK------- 91 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHC-------------TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-------
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-------
Confidence 5778999999999999999998864 4799999999742 1467899999987642
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
.+++||+|++.....+. .+. ..++..+.++|+|||.+++.+...
T Consensus 92 --~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 92 --PAQKADLLYANAVFQWV----PDH-------LAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp --CSSCEEEEEEESCGGGS----TTH-------HHHHHHHGGGEEEEEEEEEEEECC
T ss_pred --ccCCcCEEEEeCchhhC----CCH-------HHHHHHHHHhcCCCeEEEEEeCCC
Confidence 24689999998754432 121 256888899999999999977643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=100.02 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=74.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..+++. + ...|+|+|+++.. .. .+++++++|+.+.+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 127 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-G-------------IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 127 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-T-------------CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-C-------------CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc
Confidence 368899999999999999998765 3 3599999999732 11 35788999998753
Q ss_pred hHHHHHHhc-CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 107 TAEVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 107 ~~~~i~~~~-~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+ .+++||+|+++..+...- . . ......++..+.++|||||.+++.+..
T Consensus 128 --------~~~~~~fD~v~~~~~l~~~~-~--~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 128 --------MDLGKEFDVISSQFSFHYAF-S--T----SESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp --------CCCSSCEEEEEEESCGGGGG-S--S----HHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred --------cCCCCCcCEEEECchhhhhc-C--C----HHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 357899999986543210 0 1 112346788899999999999997654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-11 Score=99.22 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=82.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. ..+++++.++|+.+.+
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~------------~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~ 161 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVG------------EKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE 161 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC------------TTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence 36889999999999999999998865 35799999998732 1256888899987642
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 185 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~ 185 (249)
+.+++||+|++|+.. . ..++..+.++|+|||.+++.........++...++.. |.
T Consensus 162 --------~~~~~~D~v~~~~~~-------~---------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 162 --------LEEAAYDGVALDLME-------P---------WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp --------CCTTCEEEEEEESSC-------G---------GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred --------CCCCCcCEEEECCcC-------H---------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 345689999997531 1 1357788999999999998664433445555555543 44
Q ss_pred ee
Q 025715 186 VV 187 (249)
Q Consensus 186 ~v 187 (249)
.+
T Consensus 218 ~~ 219 (258)
T 2pwy_A 218 LE 219 (258)
T ss_dssp EE
T ss_pred eE
Confidence 33
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=92.64 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..+++. + .+|+++|+++.. .+++++++++|+.+.+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--- 93 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN-G--------------YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT--- 93 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC---
T ss_pred CCCeEEEEcCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC---
Confidence 5679999999999999998875 3 699999999732 2347888999987643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe-cC------------CCHHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RG------------KDTSLL 176 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~-~~------------~~~~~l 176 (249)
+ .++||+|++........ .+. ....+..+.++|+|||.+++... .. ....++
T Consensus 94 -----~-~~~~D~v~~~~~l~~~~---~~~------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (199)
T 2xvm_A 94 -----F-DRQYDFILSTVVLMFLE---AKT------IPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGEL 158 (199)
T ss_dssp -----C-CCCEEEEEEESCGGGSC---GGG------HHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHH
T ss_pred -----C-CCCceEEEEcchhhhCC---HHH------HHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHH
Confidence 2 46899999987543321 111 23567888999999999887543 11 133456
Q ss_pred HHHHhcCCCeeEE
Q 025715 177 YCQLKLFFPVVTF 189 (249)
Q Consensus 177 ~~~l~~~f~~v~~ 189 (249)
...+.. |+.+..
T Consensus 159 ~~~~~~-f~~~~~ 170 (199)
T 2xvm_A 159 RRYYEG-WERVKY 170 (199)
T ss_dssp HHHTTT-SEEEEE
T ss_pred HHHhcC-CeEEEe
Confidence 666655 665554
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=101.49 Aligned_cols=106 Identities=15% Similarity=0.044 Sum_probs=79.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..++...+ +...|+|+|+++.. .++++++.++|+.+...
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~------------~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~- 268 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLG------------PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR- 268 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHC------------TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG-
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhC------------CCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc-
Confidence 5788999999999999999998763 25799999999832 23468899999987542
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
....||+|++|++.. .+..+......++...+..+.++|+|||.+++.+.
T Consensus 269 -------~~~~~D~Ii~npPyg---~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 269 -------FFPEVDRILANPPHG---LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp -------TCCCCSEEEECCCSC---C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred -------ccCCCCEEEECCCCc---CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 235689999998643 22222233445667888999999999999998654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=97.09 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++...+ ..+|+|+|+++.. .+++++++++|+.+....
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 135 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFP-------------HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR 135 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc
Confidence 4678999999999999999987543 5799999999832 245788999987543200
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.. ..++||+|+++... + ....+..+.++|+|||.|++.
T Consensus 136 ----~~-~~~~fD~V~~~~~~--------~-------~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 136 ----KD-VRESYDIVTARAVA--------R-------LSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp ----TT-TTTCEEEEEEECCS--------C-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred ----cc-ccCCccEEEEeccC--------C-------HHHHHHHHHHhcCCCCEEEEE
Confidence 00 13689999997621 1 135678889999999999874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=101.88 Aligned_cols=120 Identities=20% Similarity=0.136 Sum_probs=83.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC---CceEeecCCCCh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE---GVIQVQGDITNA 105 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~---~v~~~~gDi~~~ 105 (249)
.++.+|||+|||+|.++..++++.+ ..+|+++|+++.. .+. +++++.+|+.+.
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p-------------~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~ 287 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNP-------------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 287 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCC-------------CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc
Confidence 3458999999999999999998753 5799999999843 111 467789998773
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~ 185 (249)
+..++||+|++|+++...... .+ ......+..+.++|||||.+++...+....... +++.|.
T Consensus 288 ---------~~~~~fD~Ii~nppfh~~~~~-~~-----~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~---l~~~fg 349 (375)
T 4dcm_A 288 ---------VEPFRFNAVLCNPPFHQQHAL-TD-----NVAWEMFHHARRCLKINGELYIVANRHLDYFHK---LKKIFG 349 (375)
T ss_dssp ---------CCTTCEEEEEECCCC--------C-----CHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS
T ss_pred ---------CCCCCeeEEEECCCcccCccc-CH-----HHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHH---HHHhcC
Confidence 345789999999865432111 11 112356888999999999999966555555444 344566
Q ss_pred eeEEe
Q 025715 186 VVTFA 190 (249)
Q Consensus 186 ~v~~~ 190 (249)
.+..+
T Consensus 350 ~~~~~ 354 (375)
T 4dcm_A 350 NCTTI 354 (375)
T ss_dssp CCEEE
T ss_pred CEEEE
Confidence 55554
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-10 Score=96.60 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=73.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCCChhhHHHHHHh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.. ...+++++++|+.+.+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-------- 89 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQ---------------GLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-------- 89 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTT---------------TCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCC--------
T ss_pred CCCCEEEEEcCcccHHHHHHHhC---------------CCEEEEEeCCHHHHHHHHhccCCEEEECchhhCC--------
Confidence 57889999999999999999862 3799999999832 2238899999998753
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.+++||+|++....... .+. ..++..+.++|| ||.+++..+.
T Consensus 90 ~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 90 LPDKSVDGVISILAIHHF----SHL-------EKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp SCTTCBSEEEEESCGGGC----SSH-------HHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CCCCCEeEEEEcchHhhc----cCH-------HHHHHHHHHHhC-CcEEEEEEcC
Confidence 356799999998754322 121 257888999999 9988887664
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=100.13 Aligned_cols=98 Identities=21% Similarity=0.175 Sum_probs=74.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC-CCceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~-~~v~~~~gDi~~~~~~ 108 (249)
+.++.+|||+|||+|.++..+++..+ ...+|+|+|+++.. .. .+++++++|+.+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-- 85 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLP------------EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-- 85 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSC------------TTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC--
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC--
Confidence 35788999999999999999988764 24799999999842 11 27889999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ +++||+|++....... .+. ..++..+.++|||||.+++...
T Consensus 86 ------~-~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 86 ------L-NDKYDIAICHAFLLHM----TTP-------ETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp ------C-SSCEEEEEEESCGGGC----SSH-------HHHHHHHHHTEEEEEEEEEEEC
T ss_pred ------c-CCCeeEEEECChhhcC----CCH-------HHHHHHHHHHcCCCCEEEEEec
Confidence 2 3689999998754332 121 2578889999999999997653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=92.12 Aligned_cols=121 Identities=16% Similarity=0.068 Sum_probs=85.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++.. ..|+++|+++.. ...+++++++|+.+.+
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---- 153 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLY--------------ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT---- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--------------SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC----
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhc--------------CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC----
Confidence 4678999999999999999887753 589999998732 1246888899987643
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC---------------CCHHH
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---------------KDTSL 175 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~---------------~~~~~ 175 (249)
+..++||+|++...... .... -...++..+.++|||||.+++..... ....+
T Consensus 154 ----~~~~~fD~v~~~~~l~~-----~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (254)
T 1xtp_A 154 ----LPPNTYDLIVIQWTAIY-----LTDA----DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH 220 (254)
T ss_dssp ----CCSSCEEEEEEESCGGG-----SCHH----HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHH
T ss_pred ----CCCCCeEEEEEcchhhh-----CCHH----HHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHH
Confidence 34578999999764322 1111 12457888899999999999976411 12355
Q ss_pred HHHHHhcC-CCeeEEec
Q 025715 176 LYCQLKLF-FPVVTFAK 191 (249)
Q Consensus 176 l~~~l~~~-f~~v~~~k 191 (249)
+..+++.. |+.+....
T Consensus 221 ~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 221 YKRLFNESGVRVVKEAF 237 (254)
T ss_dssp HHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHCCCEEEEeee
Confidence 66666543 88777643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=98.66 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=83.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------C--CCCceEeecCCCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P--IEGVIQVQGDITN 104 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~--~~~v~~~~gDi~~ 104 (249)
+.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. . .++++++++|+.+
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~ 164 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVG------------PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 164 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC------------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence 36889999999999999999998765 35799999998732 1 3468888999876
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc--
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-- 182 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~-- 182 (249)
.. +.+++||+|++|+... ...+..+.++|+|||.+++.+........+...++.
T Consensus 165 ~~--------~~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~ 220 (280)
T 1i9g_A 165 SE--------LPDGSVDRAVLDMLAP----------------WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQ 220 (280)
T ss_dssp CC--------CCTTCEEEEEEESSCG----------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHS
T ss_pred cC--------CCCCceeEEEECCcCH----------------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 42 3456899999976311 135778899999999999976544444455555553
Q ss_pred CCCeeEE
Q 025715 183 FFPVVTF 189 (249)
Q Consensus 183 ~f~~v~~ 189 (249)
.|..+..
T Consensus 221 ~f~~~~~ 227 (280)
T 1i9g_A 221 CWTEPRA 227 (280)
T ss_dssp SBCCCEE
T ss_pred CcCCcEE
Confidence 3554444
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-10 Score=94.64 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=72.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
++++.+|||+|||+|.++..+++..+ .++|+|+|+++.. ..+++.++.+|+.++...
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~- 137 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD-------------KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEY- 137 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-------------TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGG-
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC-------------CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccc-
Confidence 36789999999999999999998864 4799999999731 236788999999874210
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
..+. .+||+|+++... .+. ...++..+.++|||||.+++.
T Consensus 138 ---~~~~-~~~D~v~~~~~~-------~~~------~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 138 ---ANIV-EKVDVIYEDVAQ-------PNQ------AEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ---TTTS-CCEEEEEECCCS-------TTH------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ---cccC-ccEEEEEEecCC-------hhH------HHHHHHHHHHhCCCCcEEEEE
Confidence 0123 689999977421 111 134578889999999999986
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=96.87 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=71.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------C-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++... + .+++++.+|..+.
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-- 124 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALP------------DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT-- 124 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSC------------TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH--
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--
Confidence 4678999999999999999998775 358999999998431 2 3688999997542
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+...-..++||+|++|+... + ....+..+.++|+|||.+++-
T Consensus 125 l~~~~~~~~~~~fD~V~~d~~~~-------~-------~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 125 LHSLLNEGGEHQFDFIFIDADKT-------N-------YLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp HHHHHHHHCSSCEEEEEEESCGG-------G-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHhhccCCCCEeEEEEcCChH-------H-------hHHHHHHHHHhcCCCeEEEEE
Confidence 11111111236899999986411 1 123577889999999999984
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.7e-11 Score=98.61 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChhhH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNARTA 108 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~~~ 108 (249)
+.+|||+|||+|..+..+++.++ +.++|+++|+++.. .+ ++++++++|..+.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~--- 121 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLA------------DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV--- 121 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSC------------TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH---
T ss_pred CCCEEEEcCCchHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH---
Confidence 44999999999999999998875 46899999999832 12 3688889987542
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+.+++||+|++|+... + ....+..+.++|||||.+++-
T Consensus 122 ---l~~~~~~~fD~V~~d~~~~-------~-------~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 122 ---MSRLANDSYQLVFGQVSPM-------D-------LKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp ---GGGSCTTCEEEEEECCCTT-------T-------HHHHHHHHHHHEEEEEEEEET
T ss_pred ---HHHhcCCCcCeEEEcCcHH-------H-------HHHHHHHHHHHcCCCcEEEEe
Confidence 1223357899999986421 1 123577888999999999973
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-10 Score=97.24 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=74.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++. + ..|+|+|+++.. .+ ++++++++|+.+...
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 131 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAER-G--------------HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS 131 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG
T ss_pred CCCCEEEEeCCcchHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh
Confidence 34679999999999999999876 3 699999999732 12 568899999987541
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.+++||+|++....... .+. ..++..+.++|||||.+++..+.
T Consensus 132 -------~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 132 -------HLETPVDLILFHAVLEWV----ADP-------RSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp -------GCSSCEEEEEEESCGGGC----SCH-------HHHHHHHHHTEEEEEEEEEEEEB
T ss_pred -------hcCCCceEEEECchhhcc----cCH-------HHHHHHHHHHcCCCeEEEEEEeC
Confidence 345799999998755432 121 25788899999999999997653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=94.31 Aligned_cols=137 Identities=16% Similarity=0.059 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C---CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~---~~~v~~~~gDi~~~~~~ 108 (249)
++.+|||+|||+|.++..+++. ...|+|+|+++.. . ..+++++++|+.+..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 128 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP---------------ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-- 128 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT---------------TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--
T ss_pred CCCCEEEeCCCCCHHHHHHHhC---------------CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--
Confidence 3459999999999999888652 3689999999732 1 135889999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC----------CCHHHHHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG----------KDTSLLYC 178 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~----------~~~~~l~~ 178 (249)
...+||+|++...+..... .+ ....+..+.++|||||.|++..+.. ....++..
T Consensus 129 -------~~~~fD~v~~~~~l~~~~~--~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (235)
T 3lcc_A 129 -------PTELFDLIFDYVFFCAIEP--EM-------RPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEE 192 (235)
T ss_dssp -------CSSCEEEEEEESSTTTSCG--GG-------HHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHH
T ss_pred -------CCCCeeEEEEChhhhcCCH--HH-------HHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHH
Confidence 3468999999765443210 01 2356888899999999999876632 13456777
Q ss_pred HHhcC-CCeeEEecCCC--CCCCCceEEEEEeecc
Q 025715 179 QLKLF-FPVVTFAKPKS--SRNSSIEAFAVCENYF 210 (249)
Q Consensus 179 ~l~~~-f~~v~~~kP~~--sr~~s~E~y~v~~g~~ 210 (249)
.+... |+.+.+..-.. ......|.+...++..
T Consensus 193 ~l~~~Gf~~~~~~~~~~~~~~~~g~e~~~~~~~~~ 227 (235)
T 3lcc_A 193 VLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKKIN 227 (235)
T ss_dssp HHGGGTEEEEEEEECTTCCTTTTTSCEEEEEEESC
T ss_pred HHHHcCCeEEEEEecCCccccccCHHHHhhhhhcc
Confidence 77765 77666542211 1123356666666544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-10 Score=97.53 Aligned_cols=99 Identities=8% Similarity=0.006 Sum_probs=75.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++..+ .+|+++|+++.. .+ ++++++.+|+.+.
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 152 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFD--------------VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-- 152 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--
T ss_pred CCcCEEEEEcccchHHHHHHHHHCC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--
Confidence 6788999999999999999998764 699999999732 12 3588889998652
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+ ++||+|++.......+. .+ ....+..+.++|||||.+++..+....
T Consensus 153 --------~-~~fD~v~~~~~l~~~~~--~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 153 --------A-EPVDRIVSIEAFEHFGH--EN-------YDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp --------C-CCCSEEEEESCGGGTCG--GG-------HHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred --------C-CCcCEEEEeChHHhcCH--HH-------HHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 3 68999999875543321 11 235688889999999999998775544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.5e-10 Score=91.43 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=71.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
+++ +|||+|||+|.++..++++ + ..+|+++|+++.. .+ ++++++++|+.+.+
T Consensus 43 ~~~-~vLdiG~G~G~~~~~l~~~-~-------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 106 (219)
T 3dlc_A 43 TAG-TCIDIGSGPGALSIALAKQ-S-------------DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP- 106 (219)
T ss_dssp CEE-EEEEETCTTSHHHHHHHHH-S-------------EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-
T ss_pred CCC-EEEEECCCCCHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-
Confidence 444 9999999999999999987 3 3699999998732 12 36889999998753
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.+++||+|+++...... .+. ...+..+.++|+|||.+++..
T Consensus 107 -------~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 107 -------IEDNYADLIVSRGSVFFW----EDV-------ATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp -------SCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred -------CCcccccEEEECchHhhc----cCH-------HHHHHHHHHhCCCCCEEEEEe
Confidence 355789999998754332 121 247888899999999999864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=99.03 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=81.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+ ++++++.+|+.+.
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 176 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVG------------SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-- 176 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTT------------TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC------------CCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--
Confidence 6788999999999999999998864 35799999998732 12 4678888988653
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPV 186 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~ 186 (249)
+..++||+|++|+... ...+..+.++|+|||.+++..........+...++.. |..
T Consensus 177 -------~~~~~~D~V~~~~~~~----------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 177 -------FDEKDVDALFLDVPDP----------------WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp -------CSCCSEEEEEECCSCG----------------GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred -------ccCCccCEEEECCcCH----------------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 3446899999986311 1356778899999999998664333344555555432 555
Q ss_pred eEEe
Q 025715 187 VTFA 190 (249)
Q Consensus 187 v~~~ 190 (249)
+...
T Consensus 234 ~~~~ 237 (277)
T 1o54_A 234 IEVW 237 (277)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-10 Score=97.20 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~ 108 (249)
++.+|||+|||+|.++..+++. + ..+|+|+|+++.+ .+. +++++++|+.+..
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~-------------~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-- 186 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S-------------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-- 186 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S-------------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG--
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc--
Confidence 5679999999999999999987 5 4799999999742 133 3899999998631
Q ss_pred HHHHHhcCCCcc---cEEEeCCCCCCCCC---CC--cCHHHHHH---HHHHHHHHHH-HhccCCCEEEEEEecCCCHHHH
Q 025715 109 EVVIRHFDGCKA---DLVVCDGAPDVTGL---HD--MDEFVQSQ---LILAGLTVVT-HVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 109 ~~i~~~~~~~~~---DlVlsD~~~~~~g~---~~--~~~~~~~~---l~~~~l~~a~-~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
. ++| |+|+||++....+. .+ .+...... --...+..+. +.|+|||.|++.+ .......+
T Consensus 187 -------~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~-~~~q~~~v 257 (284)
T 1nv8_A 187 -------K-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI-GEDQVEEL 257 (284)
T ss_dssp -------G-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC-CTTCHHHH
T ss_pred -------c-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE-CchHHHHH
Confidence 2 367 99999964322111 00 11100000 0014566777 8999999999843 33344444
Q ss_pred HHHHhcCCCeeEEecCCCCCCCCceEEEEEee
Q 025715 177 YCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEN 208 (249)
Q Consensus 177 ~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g 208 (249)
..+++. ..++++.+.+ ++++++..
T Consensus 258 ~~~~~~----~~~~~D~~g~----~R~~~~~~ 281 (284)
T 1nv8_A 258 KKIVSD----TVFLKDSAGK----YRFLLLNR 281 (284)
T ss_dssp TTTSTT----CEEEECTTSS----EEEEEEEC
T ss_pred HHHHHh----CCeecccCCC----ceEEEEEE
Confidence 443333 2666776655 46666543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=101.50 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=76.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-------------CCCce
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-------------IEGVI 96 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-------------~~~v~ 96 (249)
+.+|.+|||+|||+|.++..+++..+ +.++|+++|+++.. . ..+++
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~ 170 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVG------------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 170 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC------------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhC------------CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence 36889999999999999999998865 35899999998731 0 24788
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
++.+|+.+... .+.+++||+|++|+.... ..+..+.++|+|||.|++..........+
T Consensus 171 ~~~~d~~~~~~------~~~~~~fD~V~~~~~~~~----------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 228 (336)
T 2b25_A 171 FIHKDISGATE------DIKSLTFDAVALDMLNPH----------------VTLPVFYPHLKHGGVCAVYVVNITQVIEL 228 (336)
T ss_dssp EEESCTTCCC-------------EEEEEECSSSTT----------------TTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred EEECChHHccc------ccCCCCeeEEEECCCCHH----------------HHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence 99999987420 123457999999864221 14677899999999999865543344445
Q ss_pred HHHHh
Q 025715 177 YCQLK 181 (249)
Q Consensus 177 ~~~l~ 181 (249)
+..++
T Consensus 229 ~~~l~ 233 (336)
T 2b25_A 229 LDGIR 233 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-10 Score=88.97 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=83.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++.. .+|+++|+++.. ..++++++++| .
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~-------- 69 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA---------------TKLYCIDINVIALKEVKEKFDSVITLSDP---K-------- 69 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE---------------EEEEEECSCHHHHHHHHHHCTTSEEESSG---G--------
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---------------CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---C--------
Confidence 578899999999999999998764 389999999742 14678888888 1
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC------------CHHHHHHHHh
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK------------DTSLLYCQLK 181 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~------------~~~~l~~~l~ 181 (249)
.+..++||+|++....... .+. ...+..+.++|||||.+++..+... ...++...++
T Consensus 70 ~~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 138 (170)
T 3i9f_A 70 EIPDNSVDFILFANSFHDM----DDK-------QHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS 138 (170)
T ss_dssp GSCTTCEEEEEEESCSTTC----SCH-------HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT
T ss_pred CCCCCceEEEEEccchhcc----cCH-------HHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh
Confidence 1356789999998654432 121 2567888999999999999876322 2446666666
Q ss_pred cCCCeeEEec
Q 025715 182 LFFPVVTFAK 191 (249)
Q Consensus 182 ~~f~~v~~~k 191 (249)
-|+.+....
T Consensus 139 -Gf~~~~~~~ 147 (170)
T 3i9f_A 139 -NFVVEKRFN 147 (170)
T ss_dssp -TEEEEEEEC
T ss_pred -CcEEEEccC
Confidence 677666643
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=96.04 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~~ 107 (249)
++.+|||+|||+|.++..++.+. ...|+|+|+++.. .+ ++++++++|+.+..
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~--------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~- 117 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ--------------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL- 117 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--------------CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-
T ss_pred CCCeEEEcCCccCHHHHHHHHcc--------------CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH-
Confidence 67899999999999999877653 2689999999732 23 57888999875421
Q ss_pred HHHHHHhcCCCc-ccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHH--HHhccCCCEEEEEEec
Q 025715 108 AEVVIRHFDGCK-ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV--THVLKEGGKFIAKIFR 169 (249)
Q Consensus 108 ~~~i~~~~~~~~-~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a--~~~Lk~gG~lv~k~~~ 169 (249)
..+.+++ ||+|++|+++. . .. ....+..+ .++|+|||.+++....
T Consensus 118 -----~~~~~~~~fD~I~~~~~~~-~-----~~------~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 118 -----KQPQNQPHFDVVFLDPPFH-F-----NL------AEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp -----TSCCSSCCEEEEEECCCSS-S-----CH------HHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred -----HhhccCCCCCEEEECCCCC-C-----cc------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 1122468 99999997632 1 11 11233444 6789999999986553
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.2e-10 Score=100.55 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..++++ + .+|+++|+++... -..++++.+|+.+..
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~-g--------------~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~---- 293 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM-G--------------AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL---- 293 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT-T--------------CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS----
T ss_pred CCCEEEEEeeeCCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc----
Confidence 6789999999999999999875 3 5999999998431 114788999998753
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 190 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (249)
...++||+|++|+++...+.... ......+..+.++|+|||.+++...........+ ...|..+...
T Consensus 294 ----~~~~~fD~Ii~npp~~~~~~~~~------~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l---~~~f~~v~~l 360 (381)
T 3dmg_A 294 ----TEEARFDIIVTNPPFHVGGAVIL------DVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLL---EEKFGAFQTL 360 (381)
T ss_dssp ----CTTCCEEEEEECCCCCTTCSSCC------HHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHH---HHHHSCCEEE
T ss_pred ----ccCCCeEEEEECCchhhcccccH------HHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHH---HHhhccEEEE
Confidence 12368999999987654322111 1234578889999999999999765555554443 3446666654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.4e-11 Score=98.34 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=70.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..+++... ..|+++|+++.. .-.++.++++|+.+.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~--------------~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~---- 120 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--------------DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV---- 120 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--------------EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH----
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC--------------CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHh----
Confidence 5788999999999999999865422 489999999832 014578888987653
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
...+.+++||+|++|...... .... ......++..+.++|||||.|++..
T Consensus 121 --~~~~~~~~fD~V~~d~~~~~~--~~~~----~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 121 --APTLPDGHFDGILYDTYPLSE--ETWH----THQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp --GGGSCTTCEEEEEECCCCCBG--GGTT----THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred --hcccCCCceEEEEECCcccch--hhhh----hhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 112556799999996321111 1111 1122356888999999999999743
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.5e-10 Score=91.95 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=80.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
.++.+|||+|||+|.++..+ + ..|+++|+++. +++++++|+.+.+ +.+++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l----~--------------~~v~~~D~s~~----~~~~~~~d~~~~~--------~~~~~ 115 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI----R--------------NPVHCFDLASL----DPRVTVCDMAQVP--------LEDES 115 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC----C--------------SCEEEEESSCS----STTEEESCTTSCS--------CCTTC
T ss_pred CCCCeEEEECCcCCHHHHHh----h--------------ccEEEEeCCCC----CceEEEeccccCC--------CCCCC
Confidence 57789999999999988665 2 48999999986 6678899987743 34578
Q ss_pred ccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC--CCHHHHHHHHhcC-CCeeEE
Q 025715 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQLKLF-FPVVTF 189 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~--~~~~~l~~~l~~~-f~~v~~ 189 (249)
||+|++...... .+. ..++..+.++|+|||.+++..+.. ....++...++.. |+.+..
T Consensus 116 fD~v~~~~~l~~-----~~~-------~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 116 VDVAVFCLSLMG-----TNI-------RDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp EEEEEEESCCCS-----SCH-------HHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEE
T ss_pred EeEEEEehhccc-----cCH-------HHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 999999765431 222 246788899999999999976643 3556677766654 766554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-10 Score=93.52 Aligned_cols=95 Identities=18% Similarity=0.074 Sum_probs=73.2
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhh
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~ 107 (249)
.+.++.+|||+|||+|.++..+++. + .+|+|+|+++.. ..+++++.++|+.+.+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~- 99 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-G--------------YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP- 99 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-T--------------CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-
Confidence 3467899999999999999998865 3 689999999732 1357889999997643
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+++||+|++........ +. ..++..+.++|||||.+++.
T Consensus 100 -------~~~~~fD~v~~~~~l~~~~----~~-------~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 100 -------LPDESVHGVIVVHLWHLVP----DW-------PKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -------SCTTCEEEEEEESCGGGCT----TH-------HHHHHHHHHHEEEEEEEEEE
T ss_pred -------CCCCCeeEEEECCchhhcC----CH-------HHHHHHHHHHCCCCcEEEEE
Confidence 3457899999976543321 21 25678889999999999986
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7e-10 Score=91.50 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=71.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-----CCceEeecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-----EGVIQVQGDIT 103 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-----~~v~~~~gDi~ 103 (249)
.++.+|||+|||+|.++..++++.+ ...|+|+|+++.. .+ .+++++++|+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSF-------------FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTT-------------CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCC-------------CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 4678999999999999999987643 4699999999732 11 16889999986
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+ ...++||+|++....... +.. ....++..+.++|||||.+++..
T Consensus 95 ~~~--------~~~~~fD~v~~~~~l~~~-----~~~----~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 95 YQD--------KRFHGYDAATVIEVIEHL-----DLS----RLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp SCC--------GGGCSCSEEEEESCGGGC-----CHH----HHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccc--------ccCCCcCEEeeHHHHHcC-----CHH----HHHHHHHHHHHHcCCCEEEEEcc
Confidence 543 123689999997654322 211 12357888899999999777644
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=97.23 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=71.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
+++|.+|||+|||+|.|+..++++. ..+|+|+|++|.+ .+ ..++++++|..+..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g--------------~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~ 188 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG--------------KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP 188 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT--------------CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc--------------CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc
Confidence 4789999999999999999998763 3689999999843 13 34788999987742
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..+.||.|+.|..+... ..+..|.++||+||.+.+-.+
T Consensus 189 ---------~~~~~D~Vi~~~p~~~~---------------~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 189 ---------GENIADRILMGYVVRTH---------------EFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp ---------CCSCEEEEEECCCSSGG---------------GGHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cccCCCEEEECCCCcHH---------------HHHHHHHHHcCCCCEEEEEee
Confidence 35789999998754321 245667899999999987655
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.6e-10 Score=96.45 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C--------------------
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-------------------- 91 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-------------------- 91 (249)
++.+|||+|||+|.++..++.+++ ...|+|+|+++.. .
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-------------~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-------------PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAE 112 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-------------CSEEEEEESCHHHHHHHHHTC----------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccc
Confidence 578999999999999999999874 4799999998721 0
Q ss_pred ---------------------------------------C-CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 92 ---------------------------------------I-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 92 ---------------------------------------~-~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
. .++++.++|+.+... .+. .+..++||+|+|.....+
T Consensus 113 ~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~--~~~-~~~~~~fD~I~~~~vl~~ 189 (292)
T 3g07_A 113 GEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD--DLV-EAQTPEYDVVLCLSLTKW 189 (292)
T ss_dssp -----------------------------CCSSTTCCSSTTTTEEEEECCCCCSSH--HHH-TTCCCCEEEEEEESCHHH
T ss_pred cccccccccccccccchhhhccCccccccccccccccccccccceEEecccccCcc--ccc-cccCCCcCEEEEChHHHH
Confidence 0 378999999986431 111 134579999999653211
Q ss_pred CCCCCcCHHH-HHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 132 TGLHDMDEFV-QSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 132 ~g~~~~~~~~-~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
. +.. .......++..+.++|+|||.|++.
T Consensus 190 i------hl~~~~~~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 190 V------HLNWGDEGLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred h------hhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 000 1123456889999999999999985
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=97.42 Aligned_cols=121 Identities=10% Similarity=0.016 Sum_probs=78.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------------CCCCceEeecCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------------PIEGVIQVQGDI 102 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------------~~~~v~~~~gDi 102 (249)
.++.+|||+|||+|.++..+++..+ ...|+|+|+++.. ...+++++++|+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~ 111 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFP-------------DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNA 111 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGST-------------TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCT
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCC-------------CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcH
Confidence 5678999999999999999988753 5799999998621 246789999999
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHH-HHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQ-LILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~-l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~ 181 (249)
.+. +...+..+++|.|++..+..+.-. .+.. .+ .....+..+.++|||||.|++.+....-...+...+.
T Consensus 112 ~~~-----l~~~~~~~~~D~v~~~~~dp~~k~---~h~k-rr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~ 182 (235)
T 3ckk_A 112 MKH-----LPNFFYKGQLTKMFFLFPDPHFKR---TKHK-WRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFE 182 (235)
T ss_dssp TTC-----HHHHCCTTCEEEEEEESCC---------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred HHh-----hhhhCCCcCeeEEEEeCCCchhhh---hhhh-hhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 862 112356689999987643221100 0000 00 1135788889999999999986533222233444444
Q ss_pred c
Q 025715 182 L 182 (249)
Q Consensus 182 ~ 182 (249)
.
T Consensus 183 ~ 183 (235)
T 3ckk_A 183 E 183 (235)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-10 Score=90.90 Aligned_cols=112 Identities=22% Similarity=0.280 Sum_probs=80.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..+++.. .+|+++|+++.. .. +++++.++|+.+.
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~---------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~- 94 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV---------------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA- 94 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS---------------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc---------------CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-
Confidence 3678899999999999999888653 599999998732 12 4678888887541
Q ss_pred hHHHHHHhcCC-CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-C
Q 025715 107 TAEVVIRHFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-F 184 (249)
Q Consensus 107 ~~~~i~~~~~~-~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f 184 (249)
+.. .+||+|++++... + ....+..+.++|+|||.+++..........+...++.. |
T Consensus 95 --------~~~~~~~D~v~~~~~~~-------~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 95 --------LCKIPDIDIAVVGGSGG-------E-------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF 152 (192)
T ss_dssp --------HTTSCCEEEEEESCCTT-------C-------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred --------cccCCCCCEEEECCchH-------H-------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC
Confidence 122 5899999986431 1 13567888999999999999776655556666666654 5
Q ss_pred CeeEE
Q 025715 185 PVVTF 189 (249)
Q Consensus 185 ~~v~~ 189 (249)
.+..
T Consensus 153 -~~~~ 156 (192)
T 1l3i_A 153 -DVNI 156 (192)
T ss_dssp -CCEE
T ss_pred -ceEE
Confidence 4443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.3e-10 Score=97.86 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=99.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-------CCCceEeecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-------IEGVIQVQGDIT 103 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-------~~~v~~~~gDi~ 103 (249)
.++.+|||+|||+|+++..++++.+ ..+|++||+++.. . .++++++.+|+.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~ 142 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT-------------VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR 142 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-------------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC-------------CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHH
Confidence 3568999999999999999887542 4699999999731 1 246888889875
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecC-----CCHHHHH
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRG-----KDTSLLY 177 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~-----~~~~~l~ 177 (249)
+. +. . ..++||+|++|..... +..... ..+ ....+..+.++|+|||.|++..... .....+.
T Consensus 143 ~~-----l~-~-~~~~fD~Ii~d~~~~~-~~~~~~----~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~ 210 (314)
T 1uir_A 143 AY-----LE-R-TEERYDVVIIDLTDPV-GEDNPA----RLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVH 210 (314)
T ss_dssp HH-----HH-H-CCCCEEEEEEECCCCB-STTCGG----GGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHH
T ss_pred HH-----HH-h-cCCCccEEEECCCCcc-cccCcc----hhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHH
Confidence 42 11 1 3468999999975322 000000 011 1356888899999999999875432 2345677
Q ss_pred HHHhcCCCeeEEec---CCCCCCCCceEEEEEeeccCCCCCCchhhhHhHH
Q 025715 178 CQLKLFFPVVTFAK---PKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLE 225 (249)
Q Consensus 178 ~~l~~~f~~v~~~k---P~~sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~ 225 (249)
..++..|..+..+. |.. ...-.+++|..-..+...++..++..++
T Consensus 211 ~~l~~~F~~v~~~~~~vP~~---~g~~~~~~as~~~~p~~~~~~~~~~~~~ 258 (314)
T 1uir_A 211 RTVREAFRYVRSYKNHIPGF---FLNFGFLLASDAFDPAAFSEGVIEARIR 258 (314)
T ss_dssp HHHHTTCSEEEEEEEEEGGG---TEEEEEEEEESSSCTTCCCTTHHHHHHH
T ss_pred HHHHHHCCceEEEEEecCCC---CCeEEEEEEECCCCcccCCHHHHHHHhh
Confidence 77888898887642 322 1112455665332344455544444333
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-09 Score=95.11 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=78.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--CCCceEeecCCCChhhHHHHHHhcCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--IEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
.++.+|||+|||+|+++..++++.+ ....|+|+|+++... ..+++++++|+.+.. ..
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~------------~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~---------~~ 96 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHG------------TAYRFVGVEIDPKALDLPPWAEGILADFLLWE---------PG 96 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHC------------SCSEEEEEESCTTTCCCCTTEEEEESCGGGCC---------CS
T ss_pred CCCCEEEECCCCChHHHHHHHHHhC------------CCCeEEEEECCHHHHHhCCCCcEEeCChhhcC---------cc
Confidence 3467999999999999999998863 247999999998652 257888999987642 23
Q ss_pred CcccEEEeCCCCCCCCCC-C----cCHHHH--H-----------HHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 118 CKADLVVCDGAPDVTGLH-D----MDEFVQ--S-----------QLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~-~----~~~~~~--~-----------~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
++||+|++|++....+.. . .+.... . .+....+..+.++|+|||.+++.+..
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 689999999865433221 0 111111 0 13346788899999999999986654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-10 Score=95.23 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=83.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCC--ceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEG--VIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~--v~~~~gDi~~~~~~ 108 (249)
+.++.+|||+|||+|.++..+++. + .+|+|+|+++... ..+ +++.++|+.+.
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g--------------~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~--- 179 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-G--------------GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--- 179 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-C--------------CeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc---
Confidence 367899999999999999888764 3 3999999998531 112 67778876542
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCee
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVV 187 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v 187 (249)
+..++||+|+++... ......+..+.++|+|||.+++..+.......+...++.. |+.+
T Consensus 180 ------~~~~~fD~Vv~n~~~--------------~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 180 ------LPFGPFDLLVANLYA--------------ELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp ------GGGCCEEEEEEECCH--------------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEE
T ss_pred ------CcCCCCCEEEECCcH--------------HHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEE
Confidence 234689999997531 1124567888999999999999776666677777777765 7766
Q ss_pred EEe
Q 025715 188 TFA 190 (249)
Q Consensus 188 ~~~ 190 (249)
...
T Consensus 240 ~~~ 242 (254)
T 2nxc_A 240 EEA 242 (254)
T ss_dssp EEE
T ss_pred EEe
Confidence 553
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=96.47 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=70.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+ .+++++.+|+.+.
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-- 127 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELP------------ADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS-- 127 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSC------------TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--
T ss_pred cCCCEEEEecCCchHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--
Confidence 4778999999999999999998775 35899999999832 23 3688999987542
Q ss_pred HHHHHHhcC-CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~-~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+. .++||+|++|+... + ....+..+.++|||||.+++.
T Consensus 128 ----l~~~~~~~~fD~V~~d~~~~-------~-------~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 128 ----LESLGECPAFDLIFIDADKP-------N-------NPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp ----HHTCCSCCCCSEEEECSCGG-------G-------HHHHHHHHHHTCCTTCEEEEE
T ss_pred ----HHhcCCCCCeEEEEECCchH-------H-------HHHHHHHHHHhcCCCeEEEEe
Confidence 11222 24899999987321 1 123577888999999999875
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-10 Score=101.28 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=80.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC--CceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE--GVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~--~v~~~~gDi~~~~ 106 (249)
.++.+|||+|||+|+++..++... ..+|++||+++.+ .+. +++++++|+.+.-
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g--------------a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l 276 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG--------------AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF 276 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT--------------BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC--------------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH
Confidence 478899999999999999998742 2589999999853 233 7889999986521
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC-CHHHHHHHHh
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQLK 181 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~-~~~~l~~~l~ 181 (249)
..... .+.+||+|++|++....+..... ...+.+..++..+.++|+|||.+++...... ....+...+.
T Consensus 277 --~~~~~--~~~~fD~Ii~DPP~~~~~~~~~~--~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~ 346 (385)
T 2b78_A 277 --KYARR--HHLTYDIIIIDPPSFARNKKEVF--SVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIE 346 (385)
T ss_dssp --HHHHH--TTCCEEEEEECCCCC-----CCC--CHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred --HHHHH--hCCCccEEEECCCCCCCChhhHH--HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHH
Confidence 11111 23589999999753211101111 1233445678889999999999998776433 3344444443
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-10 Score=94.96 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=71.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++.++++.++ +.++|+++|+++.. .+. +++++++|+.+.
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 122 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLS------------SGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS-- 122 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCC------------SSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--
T ss_pred hCCCEEEEecCCccHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--
Confidence 4678999999999999999998774 35799999999732 233 488899998642
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+... ..++||+|++|+... . ....+..+.++|+|||.+++.
T Consensus 123 ~~~~~~~-~~~~fD~v~~d~~~~-------~-------~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 123 LQQIENE-KYEPFDFIFIDADKQ-------N-------NPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp HHHHHHT-TCCCCSEEEECSCGG-------G-------HHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHhc-CCCCcCEEEEcCCcH-------H-------HHHHHHHHHHhcCCCcEEEEe
Confidence 1122211 125799999997421 1 124677888999999998875
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=94.94 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=78.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++. + .+|+++|+++.. ..++++++++|+.+..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 104 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-A--------------ARWAAYDFSPELLKLARANAPHADVYEWNGKGEL------- 104 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-S--------------SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSC-------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHhCCCceEEEcchhhcc-------
Confidence 67899999999999999999876 3 699999999842 1467899999995421
Q ss_pred hcC-CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc-CCCeeEE
Q 025715 114 HFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTF 189 (249)
Q Consensus 114 ~~~-~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~-~f~~v~~ 189 (249)
.+. +++||+|+++.. .. ..+..+.++|||||.|+ ..........+...+.. -|..+.+
T Consensus 105 ~~~~~~~fD~v~~~~~--------~~---------~~l~~~~~~LkpgG~l~-~~~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 105 PAGLGAPFGLIVSRRG--------PT---------SVILRLPELAAPDAHFL-YVGPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp CTTCCCCEEEEEEESC--------CS---------GGGGGHHHHEEEEEEEE-EEESSSCCTHHHHHHHHTTCEEEEE
T ss_pred CCcCCCCEEEEEeCCC--------HH---------HHHHHHHHHcCCCcEEE-EeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 123 578999999721 11 35667889999999999 23333344455555554 3555443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-10 Score=92.79 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=72.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..+++. + ...|+++|+++.. ...+++++++|+.+.+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----- 102 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH-G-------------ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLH----- 102 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC-----
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC-C-------------CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc-----
Confidence 46789999999999999998875 3 1399999999732 1236888899987643
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+..++||+|++....... .+. ..++..+.++|+|||.+++.+.
T Consensus 103 ---~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 103 ---LPQDSFDLAYSSLALHYV----EDV-------ARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp ---CCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CCCCCceEEEEecccccc----chH-------HHHHHHHHHhcCcCcEEEEEeC
Confidence 345789999997654322 121 3568888999999999999764
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-10 Score=93.87 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=78.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++. + .+|+++|+++.. .+ +++++..+|+.+..
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~--------------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 153 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-A--------------GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE- 153 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-S--------------SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-C--------------CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-
Confidence 57899999999999999999887 4 699999999732 12 56888899987631
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCee
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v 187 (249)
+.+++||+|+++... . ..++..+.++|+|||.+++.+.......++...++..|..+
T Consensus 154 -------~~~~~~D~v~~~~~~-------~---------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~~ 210 (248)
T 2yvl_A 154 -------VPEGIFHAAFVDVRE-------P---------WHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNL 210 (248)
T ss_dssp -------CCTTCBSEEEECSSC-------G---------GGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTTEEEE
T ss_pred -------cCCCcccEEEECCcC-------H---------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCcc
Confidence 134689999997531 1 13567788999999999986543334445555544334443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-10 Score=97.05 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=73.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
+.++.+|||+|||+|.++..++.... +...|+++|+++.. .. .+++++++|+.+.+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSAC------------PGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD 183 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTC------------TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC------------CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC
Confidence 36889999999999999988853222 35799999999732 11 23889999998753
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+. ++||+|+++...... .+.. .....+..+.++|||||.|++..+
T Consensus 184 --------~~-~~fD~v~~~~~~~~~----~~~~----~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 184 --------TR-EGYDLLTSNGLNIYE----PDDA----RVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp --------CC-SCEEEEECCSSGGGC----CCHH----HHHHHHHHHHHHEEEEEEEEEECC
T ss_pred --------cc-CCeEEEEECChhhhc----CCHH----HHHHHHHHHHHhcCCCeEEEEEec
Confidence 24 789999997644321 1221 123468888999999999998764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.4e-10 Score=100.85 Aligned_cols=115 Identities=18% Similarity=0.118 Sum_probs=76.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCC--ceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEG--VIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~--v~~~~gDi~~~~~~~ 109 (249)
++|.+|||+|||+|+|+..++.. + ..|+++|+++.+. ..+ ..+.++|+.+.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~-g--------------a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~---- 273 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK-G--------------AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPT---- 273 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHH----
T ss_pred cCCCeEEEcccchhHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHH----
Confidence 56899999999999999999875 3 3599999998431 112 24557776542
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC-CCHHHHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYC 178 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~-~~~~~l~~ 178 (249)
...+.+ .||+|++|++.-..+ ..+.....+.+..++..+.++|+|||.|++.++.. .....+..
T Consensus 274 --l~~~~~-~fD~Ii~dpP~f~~~--~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~ 338 (393)
T 4dmg_A 274 --LRGLEG-PFHHVLLDPPTLVKR--PEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLE 338 (393)
T ss_dssp --HHTCCC-CEEEEEECCCCCCSS--GGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred --HHHhcC-CCCEEEECCCcCCCC--HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHH
Confidence 122333 499999997532211 12333345556778999999999999999766643 33344333
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-10 Score=96.88 Aligned_cols=142 Identities=17% Similarity=0.062 Sum_probs=91.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~ 104 (249)
.++.+|||+|||+|+++..+++..+ ..+|++||+++.. ..++++++.+|+.+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 160 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT-------------VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLA 160 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC-------------CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence 4668999999999999999987532 4699999999731 12468888898754
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~ 179 (249)
.. ....+++||+|++|..... + .. ..+. ...+..+.++|+|||.|++...... ....+...
T Consensus 161 ~~------~~~~~~~fDvIi~d~~~~~-~---~~----~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 226 (304)
T 3bwc_A 161 FV------RQTPDNTYDVVIIDTTDPA-G---PA----SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRF 226 (304)
T ss_dssp HH------HSSCTTCEEEEEEECC-----------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHH
T ss_pred HH------HhccCCceeEEEECCCCcc-c---cc----hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHH
Confidence 21 1113578999999874321 1 00 1111 3578889999999999998654332 23456667
Q ss_pred HhcC-CCeeEEecC-CCCCCCCceEEEEEee
Q 025715 180 LKLF-FPVVTFAKP-KSSRNSSIEAFAVCEN 208 (249)
Q Consensus 180 l~~~-f~~v~~~kP-~~sr~~s~E~y~v~~g 208 (249)
++.. |..+..+.- ..+.+...-.+++|..
T Consensus 227 l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 227 IRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred HHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 7777 988877532 2233233235666654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.9e-10 Score=96.11 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=75.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++..+ ...|+++|+++.. ..+++.+..+|+.+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 143 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP-------------EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP------- 143 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-------------TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS-------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-------------CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCC-------
Confidence 5788999999999999999988753 3699999999742 1356788899987643
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+.+++||+|++...+. .+..+.++|||||.+++.+.......++
T Consensus 144 -~~~~~fD~v~~~~~~~------------------~l~~~~~~L~pgG~l~~~~~~~~~~~~~ 187 (269)
T 1p91_A 144 -FSDTSMDAIIRIYAPC------------------KAEELARVVKPGGWVITATPGPRHLMEL 187 (269)
T ss_dssp -BCTTCEEEEEEESCCC------------------CHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred -CCCCceeEEEEeCChh------------------hHHHHHHhcCCCcEEEEEEcCHHHHHHH
Confidence 3457899999864321 3567889999999999977765554443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-09 Score=90.15 Aligned_cols=109 Identities=12% Similarity=0.118 Sum_probs=74.4
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC------C-----------CC-
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A-----------PI- 92 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~------~-----------~~- 92 (249)
.+.+.++ +.++.+|||+|||+|.++..++++.+ +.++|+|+|+++. . .+
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g------------~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~ 100 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVG------------SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG 100 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHC------------TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEEECCccccccHHHHHHHHHHHHhcCCC
Confidence 3334443 36789999999999999999998874 3579999999984 1 01
Q ss_pred CCceEeecC-CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 93 EGVIQVQGD-ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 93 ~~v~~~~gD-i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
++++++.+| +..... .+.+++||+|++........ +.. ..++....+++|||.+++..+.
T Consensus 101 ~~v~~~~~d~~~~~~~------~~~~~~fD~v~~~~~l~~~~----~~~-------~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 101 DRLTVHFNTNLSDDLG------PIADQHFDRVVLAHSLWYFA----SAN-------ALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp GGEEEECSCCTTTCCG------GGTTCCCSEEEEESCGGGSS----CHH-------HHHHHHHHHTTTCSEEEEEEEC
T ss_pred CceEEEECChhhhccC------CCCCCCEEEEEEccchhhCC----CHH-------HHHHHHHHHhCCCCEEEEEEec
Confidence 468888888 332110 13457899999987553321 221 2345556667779999997764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=99.01 Aligned_cols=93 Identities=17% Similarity=0.094 Sum_probs=69.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|..+..++...+ ..+|+++|+++.+ .+.+++++++|+.+...
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~- 144 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRP-------------ELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAR- 144 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTT-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhc-
Confidence 4678999999999999999988754 5799999999842 24578999998765321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.....++||+|+|.... + ....+..+.++|||||.|++
T Consensus 145 ----~~~~~~~fD~I~s~a~~--------~-------~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 145 ----EAGHREAYARAVARAVA--------P-------LCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp ----STTTTTCEEEEEEESSC--------C-------HHHHHHHHGGGEEEEEEEEE
T ss_pred ----ccccCCCceEEEECCcC--------C-------HHHHHHHHHHHcCCCeEEEE
Confidence 00013689999997521 1 12467888999999999987
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=95.30 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=71.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-------CCCceEeecCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-------IEGVIQVQGDI 102 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-------~~~v~~~~gDi 102 (249)
++++.+|||+|||+|.++..+++.++ +.++|+++|+++.. . ..+++++++|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 142 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVG------------CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 142 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHC------------TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhC------------CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc
Confidence 46789999999999999999998875 34799999999732 0 24688889998
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+.. ....+||+|+++..+.. .+..+.++|||||.+++.+..
T Consensus 143 ~~~~--------~~~~~fD~i~~~~~~~~-----------------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 143 RMGY--------AEEAPYDAIHVGAAAPV-----------------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GGCC--------GGGCCEEEEEECSBBSS-----------------CCHHHHHTEEEEEEEEEEESC
T ss_pred ccCc--------ccCCCcCEEEECCchHH-----------------HHHHHHHhcCCCcEEEEEEec
Confidence 6432 12357999999875421 124567899999999997653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-10 Score=92.00 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=73.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+ + ..+|+++|+++.. ..++++++++|+.+.+
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l----~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 90 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL----P-------------YPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALP------- 90 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC----C-------------CSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCC-------
T ss_pred CCCCeEEEECCCCCHhHHhC----C-------------CCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCC-------
Confidence 47889999999999998776 3 1389999999742 1257888999987753
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+.+++||+|++....... .+. ..++..+.++|||||.+++.++....
T Consensus 91 -~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 91 -FPGESFDVVLLFTTLEFV----EDV-------ERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp -SCSSCEEEEEEESCTTTC----SCH-------HHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred -CCCCcEEEEEEcChhhhc----CCH-------HHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 345789999998654332 121 25788889999999999998876544
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.03 E-value=7.7e-10 Score=91.39 Aligned_cols=97 Identities=23% Similarity=0.208 Sum_probs=71.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..+++.. .+|+++|+++.. .-.+++++++|+.+.+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 98 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYG---------------FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS--- 98 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTT---------------CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC---
T ss_pred CCCCeEEEEeccCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC---
Confidence 568899999999999998888753 399999999732 0157889999998743
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+..++||+|+++...... ... -...++..+.++|+|||.+++...
T Consensus 99 -----~~~~~~D~v~~~~~~~~~---~~~------~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 99 -----FEDKTFDYVIFIDSIVHF---EPL------ELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp -----SCTTCEEEEEEESCGGGC---CHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----CCCCcEEEEEEcCchHhC---CHH------HHHHHHHHHHHHcCCCcEEEEEec
Confidence 345689999998642111 111 123578888999999999998655
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.03 E-value=8e-10 Score=91.23 Aligned_cols=100 Identities=12% Similarity=-0.014 Sum_probs=70.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~ 104 (249)
+++.+|||+|||+|.++..++++.+ ..+|+|+|+++.. .+++++++++|+.+
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 92 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNP-------------SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER 92 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCT-------------TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh
Confidence 6789999999999999999998753 5799999999841 13478999999987
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+ +..++ |.|....+.. ........-...++..+.++|||||.|++.+
T Consensus 93 l~--------~~~~~-d~v~~~~~~~------~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 93 LP--------PLSGV-GELHVLMPWG------SLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp CC--------SCCCE-EEEEEESCCH------HHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred CC--------CCCCC-CEEEEEccch------hhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 54 23344 7776433210 0000000001457888999999999999854
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-10 Score=98.84 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CC--------CceEeecCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IE--------GVIQVQGDIT 103 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~--------~v~~~~gDi~ 103 (249)
++.+|||||||+|+.+..++... ...|+|+|+++... .. ++++.++|+.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~--------------~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~ 113 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE--------------IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIR 113 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT--------------CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTT
T ss_pred CCCeEEEEecCCcHhHHHHHhcC--------------CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcc
Confidence 57899999999998766555432 36899999998420 01 1456677775
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.......+...+..++||+|+|..+..+. .+..+ ...++..+.++|||||.|++.+.
T Consensus 114 ~d~~~~~l~~~~~~~~FD~V~~~~~lhy~--~~~~~------~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 114 SDTFVSSVREVFYFGKFNIIDWQFAIHYS--FHPRH------YATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSSHHHHHHTTCCSSCEEEEEEESCGGGT--CSTTT------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhhhhccccCCCeeEEEECchHHHh--CCHHH------HHHHHHHHHHHcCCCCEEEEEeC
Confidence 43322233333456799999987654321 11111 13578899999999999998765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.03 E-value=5e-10 Score=91.49 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=72.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..++... ..+|+|+|+++... -.+++++++|+.+.+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~--------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 84 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVED--------------GYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP--- 84 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHT--------------TCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC---
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC--------------CCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC---
Confidence 577899999999999855444443 36999999997320 146788999998743
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+.+++||+|++...... ... .....++..+.++|||||.+++..+..
T Consensus 85 -----~~~~~fD~v~~~~~l~~-----~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 85 -----FKDESMSFVYSYGTIFH-----MRK----NDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp -----SCTTCEEEEEECSCGGG-----SCH----HHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred -----CCCCceeEEEEcChHHh-----CCH----HHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 34578999999754322 111 113457888899999999999987754
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-10 Score=93.57 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=70.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+ .+++++++|+.+.
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 128 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALP------------KDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT-- 128 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCC------------TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH--
Confidence 4678999999999999999998764 35899999999732 12 3488899987542
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+......++||+|++|+... + ....+..+.++|+|||.+++.
T Consensus 129 ~~~~~~~~~~~~fD~v~~~~~~~-------~-------~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 129 LAELIHAGQAWQYDLIYIDADKA-------N-------TDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp HHHHHTTTCTTCEEEEEECSCGG-------G-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhhhccCCCCccEEEECCCHH-------H-------HHHHHHHHHHhcCCCcEEEEe
Confidence 11111111116899999987411 1 124677888999999999985
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.3e-10 Score=99.93 Aligned_cols=109 Identities=20% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|+++..++.. . .+|+++|+++.. .+.+++++++|+.+.. .
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~--------------~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~--~ 271 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-F--------------REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL--R 271 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-E--------------EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH--H
T ss_pred CCCeEEEeeeccCHHHHHHHHh-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHH--H
Confidence 6789999999999999999987 4 699999999842 2355889999986532 1
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
.+.. .+.+||+|++|++..... ........+.+...+..+.++|+|||.|++.+...
T Consensus 272 ~~~~--~~~~fD~Ii~dpP~~~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 272 RLEK--EGERFDLVVLDPPAFAKG--KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp HHHH--TTCCEEEEEECCCCSCCS--TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHh--cCCCeeEEEECCCCCCCC--hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1111 246899999997532211 12223334556678899999999999999977753
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-10 Score=90.42 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=80.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++ + ..+|+++|+++.. .+++++++++|+.+.
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~--~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--- 95 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK--R-------------CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV--- 95 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT--T-------------SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---
T ss_pred CCCCEEEEeCCCCCHHHHHHHh--c-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---
Confidence 5778999999999999999987 2 3799999999732 135688888987652
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVT 188 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~ 188 (249)
+..++||+|+++.. . +. ...+..+.++ |||.+++.........++...++.+-..+.
T Consensus 96 ------~~~~~~D~i~~~~~------~--~~-------~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 152 (183)
T 2yxd_A 96 ------LDKLEFNKAFIGGT------K--NI-------EKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVD 152 (183)
T ss_dssp ------GGGCCCSEEEECSC------S--CH-------HHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred ------ccCCCCcEEEECCc------c--cH-------HHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEE
Confidence 23368999999865 1 11 2345566666 999999977665566667777776544555
Q ss_pred EecC
Q 025715 189 FAKP 192 (249)
Q Consensus 189 ~~kP 192 (249)
.+.+
T Consensus 153 ~~~~ 156 (183)
T 2yxd_A 153 AVNV 156 (183)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5433
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=90.81 Aligned_cols=95 Identities=26% Similarity=0.307 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C----CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~----~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..+++. + .+|+++|+++... . .+++++++|+.+.+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~--------------~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---- 97 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-F--------------KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN---- 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-S--------------SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC----
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-C--------------CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC----
Confidence 6789999999999999988875 3 5899999997320 1 16888999987643
Q ss_pred HHHhcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+. ++||+|++.. ..... .+.. ....++..+.++|+|||.+++.+
T Consensus 98 ----~~-~~fD~v~~~~~~l~~~----~~~~----~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 98 ----IN-RKFDLITCCLDSTNYI----IDSD----DLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp ----CS-CCEEEEEECTTGGGGC----CSHH----HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ----cc-CCceEEEEcCcccccc----CCHH----HHHHHHHHHHHhcCCCcEEEEEe
Confidence 23 6899999975 43321 1111 12457888899999999999854
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-10 Score=91.94 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=71.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-----CCceEeecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-----EGVIQVQGDIT 103 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-----~~v~~~~gDi~ 103 (249)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+++.. .+ ++++++++|+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS-------------FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT-------------CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC-------------CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 4678999999999999999987643 4799999999732 01 17899999996
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
..+ +..++||+|++....... +.. ....++..+.++|||||.++...
T Consensus 95 ~~~--------~~~~~fD~V~~~~~l~~~-----~~~----~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 95 YRD--------KRFSGYDAATVIEVIEHL-----DEN----RLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp SCC--------GGGTTCSEEEEESCGGGC-----CHH----HHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccc--------cccCCCCEEEEHHHHHhC-----CHH----HHHHHHHHHHHhhCCCEEEEEcc
Confidence 643 134689999987654322 211 12357888899999999776643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-10 Score=91.63 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=68.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+++.+|||+|||+|.++..+++. + .+|+++|+++.. .+++++++.+|+.+...
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~-~--------------~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 139 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL-V--------------QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ- 139 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-S--------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-C--------------CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-
Confidence 57899999999999999999887 3 699999999732 24578899999876321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
..++||+|+++..+... .+ .+.++|+|||.+++.+..
T Consensus 140 -------~~~~~D~i~~~~~~~~~----~~-------------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 140 -------ARAPFDAIIVTAAPPEI----PT-------------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp -------GGCCEEEEEESSBCSSC----CT-------------HHHHTEEEEEEEEEEECS
T ss_pred -------cCCCccEEEEccchhhh----hH-------------HHHHhcccCcEEEEEEcC
Confidence 23689999998754321 11 357899999999996543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-09 Score=88.35 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=69.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~ 108 (249)
+.++.+|||+|||+|.++..+++. ..|+++|+++.. .-.+++++++|+.+.+
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~----------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 92 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH----------------YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-- 92 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT----------------SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC--
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC----------------CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC--
Confidence 357789999999999999887653 489999999732 0146788899987643
Q ss_pred HHHHHhcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+. ++||+|++.. ..... .+. .....++..+.++|+|||.+++.+
T Consensus 93 ------~~-~~fD~v~~~~~~~~~~----~~~----~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 93 ------LP-EPVDAITILCDSLNYL----QTE----ADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp ------CS-SCEEEEEECTTGGGGC----CSH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------CC-CCcCEEEEeCCchhhc----CCH----HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 23 6899999864 32221 111 112456788899999999999854
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-10 Score=99.14 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=78.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC--CceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE--GVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~--~v~~~~gDi~~~~ 106 (249)
.++.+|||+|||+|+++..++.. + .+|++||+++.. .+. +++++++|+.+..
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~-g--------------a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l 216 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA-G--------------AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 216 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-T--------------CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred CCCCcEEEcccccCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHH
Confidence 36789999999999999999874 3 499999999842 133 3889999986532
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC--CCHHHHHHHHh
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQLK 181 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~--~~~~~l~~~l~ 181 (249)
..... ..++||+|++|++....+... ......+....++..+.++|+|||.|++..... .....+..+++
T Consensus 217 --~~~~~--~~~~fD~Ii~dPP~~~~~~~~-~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~ 288 (332)
T 2igt_A 217 --QREER--RGSTYDIILTDPPKFGRGTHG-EVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMR 288 (332)
T ss_dssp --HHHHH--HTCCBSEEEECCCSEEECTTC-CEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred --HHHHh--cCCCceEEEECCccccCCchH-HHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHH
Confidence 11110 136899999998522111100 000112234567888999999999977755432 23444555555
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=110.12 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=75.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC--CceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE--GVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~--~v~~~~gDi~~~~ 106 (249)
.+|.+|||||||+|+++.+++.. + ..+|++||+++.+ .+. +++++++|+.+.-
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-g-------------a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l 603 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-G-------------ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL 603 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH
T ss_pred cCCCcEEEeeechhHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH
Confidence 36889999999999999998863 2 3579999999842 133 6889999986521
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.. ..++||+|++|++....+....+.....+.+...+..+.++|+|||.|++.+..
T Consensus 604 ------~~-~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 604 ------RE-ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ------HH-CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ------Hh-cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 11 346899999998532111110000112344567788999999999999986654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=88.78 Aligned_cols=95 Identities=18% Similarity=0.091 Sum_probs=70.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~ 109 (249)
.++ +|||+|||+|.++..+++. + ..|+++|+++... -.++.++++|+.+.+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 89 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL-G--------------YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD--- 89 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT-T--------------CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS---
T ss_pred CCC-CEEEECCCCCHhHHHHHhC-C--------------CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC---
Confidence 577 9999999999999888864 3 5999999997320 126788899998753
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+..++||+|++... .. .. ......+..+.++|+|||.+++.++.
T Consensus 90 -----~~~~~fD~v~~~~~-----~~--~~----~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 90 -----IVADAWEGIVSIFC-----HL--PS----SLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp -----CCTTTCSEEEEECC-----CC--CH----HHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred -----CCcCCccEEEEEhh-----cC--CH----HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 34578999998531 11 11 11245788889999999999998763
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.00 E-value=9.2e-10 Score=93.02 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=72.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------------CCCCceEeec
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------------PIEGVIQVQG 100 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------------~~~~v~~~~g 100 (249)
.++.+|||+|||+|.++..+++..+ ...|+|+|+++.. .++++.++++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~ 114 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFP-------------EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRG 114 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHST-------------TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-------------CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEec
Confidence 3678999999999999999998763 4799999999731 3467899999
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCC-CcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~-~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
|+.+.- ...+..+++|.|+...+..+...+ ..... +....+..+.++|+|||.|++.+
T Consensus 115 D~~~~l-----~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~----~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 115 NAMKFL-----PNFFEKGQLSKMFFCFPDPHFKQRKHKARI----ITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CTTSCG-----GGTSCTTCEEEEEEESCCCC------CSSC----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHH-----HHhccccccCEEEEECCCcccccchhHHhh----ccHHHHHHHHHHcCCCCEEEEEe
Confidence 998621 112456789999765432211000 00000 01356788899999999999854
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.9e-10 Score=93.48 Aligned_cols=93 Identities=19% Similarity=0.184 Sum_probs=70.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.. +.++|+++|+++.. .+ ++++++.+|+.+..
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~-------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 135 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASIS-------------DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQF- 135 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTC-------------TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCH-
T ss_pred cCCCEEEEEeCchhHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH-
Confidence 467899999999999999998744 25899999999732 23 37899999987631
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
. ..+ .++||+|++|.... + ....+..+.++|+|||.|++
T Consensus 136 -~---~~~-~~~fD~V~~~~~~~-------~-------~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 136 -E---NVN-DKVYDMIFIDAAKA-------Q-------SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp -H---HHT-TSCEEEEEEETTSS-------S-------HHHHHHHHGGGEEEEEEEEE
T ss_pred -H---hhc-cCCccEEEEcCcHH-------H-------HHHHHHHHHHhcCCCeEEEE
Confidence 1 012 46899999986421 1 12467888999999999987
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-10 Score=98.48 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=70.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCC-CceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIE-GVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~-~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++. + ..+|+|+|++++. .+. +++++++|+.+.+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g-------------~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 128 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-G-------------ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-- 128 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-T-------------CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC--
T ss_pred CCCCEEEEEeccchHHHHHHHHC-C-------------CCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc--
Confidence 47789999999999999999876 3 3699999999732 122 3899999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++.++||+|+++....... .... ...++..+.++|||||.++.
T Consensus 129 ------~~~~~fD~Iis~~~~~~l~-~~~~-------~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 129 ------LPVEKVDIIISEWMGYCLF-YESM-------LNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp ------CSSSCEEEEEECCCBBTBT-BTCC-------HHHHHHHHHHHEEEEEEEES
T ss_pred ------CCCCceEEEEEcccccccc-Cchh-------HHHHHHHHHHhCCCCCEEcc
Confidence 3457999999986322211 1111 23467778899999999873
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.5e-09 Score=89.29 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------C--CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------P--IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~--~~~v~~~~gDi~~~ 105 (249)
.+.+|||+|||+|+.+..++++.+ ..+|++||+++.. . .++++++.+|..+.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~ 141 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPS-------------VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH 141 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTT-------------CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH
T ss_pred CCCEEEEECCchHHHHHHHHhCCC-------------CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH
Confidence 468999999999999998886532 4799999999731 1 25788899997542
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHHHh
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQLK 181 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~l~ 181 (249)
+. . ..++||+|++|............ ....+..+.++|+|||.|++....+. ....+...++
T Consensus 142 -----l~-~-~~~~fD~Ii~d~~~~~~~~~~l~-------~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~ 207 (275)
T 1iy9_A 142 -----IA-K-SENQYDVIMVDSTEPVGPAVNLF-------TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVK 207 (275)
T ss_dssp -----HH-T-CCSCEEEEEESCSSCCSCCCCCS-------TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHH
T ss_pred -----Hh-h-CCCCeeEEEECCCCCCCcchhhh-------HHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHH
Confidence 11 1 24689999999753211100000 02467788899999999999754432 1345667788
Q ss_pred cCCCeeEEec
Q 025715 182 LFFPVVTFAK 191 (249)
Q Consensus 182 ~~f~~v~~~k 191 (249)
..|..+..+.
T Consensus 208 ~~F~~v~~~~ 217 (275)
T 1iy9_A 208 EIFPITKLYT 217 (275)
T ss_dssp TTCSEEEEEE
T ss_pred HhCCCeEEEE
Confidence 8899887653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-10 Score=96.29 Aligned_cols=95 Identities=16% Similarity=0.025 Sum_probs=71.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C----CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~----~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..+++. + ..|+|+|+++... . .+++++++|+.+..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~-g--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---- 180 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL-G--------------YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN---- 180 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC----
T ss_pred CCCcEEEECCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc----
Confidence 6789999999999999999876 3 5999999998421 0 16888999987643
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ .++||+|+++..+..... + .....+..+.++|+|||.+++...
T Consensus 181 ----~-~~~fD~i~~~~~~~~~~~---~------~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 181 ----I-QENYDFIVSTVVFMFLNR---E------RVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp ----C-CSCEEEEEECSSGGGSCG---G------GHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----c-cCCccEEEEccchhhCCH---H------HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 578999999875543211 1 123578888999999999887543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-09 Score=96.98 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=70.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------------CC--CCceEe
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PI--EGVIQV 98 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------~~--~~v~~~ 98 (249)
++++.+|||||||+|..+..++...+ ..+|+|||+++.. .+ .+++++
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g-------------~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi 237 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATN-------------CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 237 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCC-------------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 36889999999999999999987654 3469999999621 11 468999
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+||+.+.+... .+ ..+|+|+++.... ... ...+|....+.|||||.||+.
T Consensus 238 ~GD~~~lp~~d----~~--~~aDVVf~Nn~~F-------~pd-----l~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 238 RGDFLSEEWRE----RI--ANTSVIFVNNFAF-------GPE-----VDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp ECCTTSHHHHH----HH--HTCSEEEECCTTC-------CHH-----HHHHHHHHHTTSCTTCEEEES
T ss_pred ECcccCCcccc----cc--CCccEEEEccccc-------Cch-----HHHHHHHHHHcCCCCcEEEEe
Confidence 99999875321 12 3699999985321 111 124566778999999999975
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=94.55 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------C--CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------P--IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~--~~~v~~~~gDi~~~ 105 (249)
++.+|||+|||+|+++..++++.+ ..+|++||+++.. . .++++++.+|..+.
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~ 156 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDS-------------VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY 156 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTT-------------CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCC-------------CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH
Confidence 458999999999999999987643 4799999999731 0 25688888987542
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQL 180 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~l 180 (249)
- . ...++||+|++|......+.. ..+ ....+..+.++|+|||.|++....+. ....+...+
T Consensus 157 l------~-~~~~~fD~Ii~d~~~~~~~~~-------~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 222 (296)
T 1inl_A 157 V------R-KFKNEFDVIIIDSTDPTAGQG-------GHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRI 222 (296)
T ss_dssp G------G-GCSSCEEEEEEEC-----------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHH
T ss_pred H------h-hCCCCceEEEEcCCCcccCch-------hhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHH
Confidence 1 1 124689999999743211110 011 13567888999999999999754432 234566667
Q ss_pred hcCCCeeEEecC-CCCCCCCceEEEEEee
Q 025715 181 KLFFPVVTFAKP-KSSRNSSIEAFAVCEN 208 (249)
Q Consensus 181 ~~~f~~v~~~kP-~~sr~~s~E~y~v~~g 208 (249)
+..|..+..+.. ..+-+...-.+++|..
T Consensus 223 ~~~F~~v~~~~~~vp~~p~g~~~f~~as~ 251 (296)
T 1inl_A 223 SKVFPITRVYLGFMTTYPSGMWSYTFASK 251 (296)
T ss_dssp HHHCSEEEEEEEECTTSTTSEEEEEEEES
T ss_pred HHHCCceEEEEeecCccCCCceEEEEecC
Confidence 777988876531 1122223335666653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=86.22 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=68.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..++++ + ..+|+++|+++.. .+ ++++++++|+.+..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 94 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-G-------------MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI- 94 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-T-------------CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH-
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH-
Confidence 46789999999999999998875 3 3699999999732 12 35788888876521
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHH--HHhccCCCEEEEEEecCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV--THVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a--~~~Lk~gG~lv~k~~~~~ 171 (249)
... .++||+|++|+.... .. ....+... .++|+|||.+++.+....
T Consensus 95 -----~~~-~~~fD~i~~~~~~~~--------~~----~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 95 -----DCL-TGRFDLVFLDPPYAK--------ET----IVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp -----HHB-CSCEEEEEECCSSHH--------HH----HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred -----Hhh-cCCCCEEEECCCCCc--------ch----HHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 122 357999999864210 01 11222333 489999999999766443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=90.75 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCC---ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAP---GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gp---G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~ 108 (249)
+..+|||||||+ |.++..+.+.. +..+|+++|+++.. ..++++++++|+.+....
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~-------------p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~ 143 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVN-------------PDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYI 143 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHC-------------TTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhC-------------CCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhh
Confidence 347999999999 99887776654 35799999999732 125789999999986432
Q ss_pred ---HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 109 ---EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 109 ---~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
..+.+.+...++|+|++......... .+ ...++..+.++|+|||.|++..+..
T Consensus 144 ~~~~~~~~~~d~~~~d~v~~~~vlh~~~d--~~-------~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 144 LNHPDVRRMIDFSRPAAIMLVGMLHYLSP--DV-------VDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHSHHHHHHCCTTSCCEEEETTTGGGSCT--TT-------HHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred hccchhhccCCCCCCEEEEEechhhhCCc--HH-------HHHHHHHHHHhCCCCcEEEEEEecC
Confidence 11113344458999999876543211 11 1357888999999999999987754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.5e-10 Score=95.43 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=80.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------------C--------------
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------I-------------- 92 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------------~-------------- 92 (249)
.+|.+|||||||||.++..++... ...|+|+|+++... +
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~--------------~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~ 119 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS--------------FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEG 119 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT--------------EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTT
T ss_pred CCCceEEEeCCCccHHHHHHHHhh--------------hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCC
Confidence 478899999999998876655432 14799999997210 0
Q ss_pred -------------CCce-EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc
Q 025715 93 -------------EGVI-QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 93 -------------~~v~-~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (249)
.++. ++++|+.+.... .....++||+|++.....+.. .+ ..-...++..+.++||
T Consensus 120 ~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~----~~~~~~~fD~V~~~~~l~~i~---~~----~~~~~~~l~~i~r~LK 188 (263)
T 2a14_A 120 NSGRWEEKEEKLRAAVKRVLKCDVHLGNPL----APAVLPLADCVLTLLAMECAC---CS----LDAYRAALCNLASLLK 188 (263)
T ss_dssp CGGGHHHHHHHHHHHEEEEEECCTTSSSTT----TTCCCCCEEEEEEESCHHHHC---SS----HHHHHHHHHHHHTTEE
T ss_pred CCcchhhHHHHHHhhhheEEeccccCCCCC----CccccCCCCEeeehHHHHHhc---CC----HHHHHHHHHHHHHHcC
Confidence 0122 678888773210 001246899999986532210 01 0112457888999999
Q ss_pred CCCEEEEEEecC---------------CCHHHHHHHHhcC-CCeeEEec
Q 025715 159 EGGKFIAKIFRG---------------KDTSLLYCQLKLF-FPVVTFAK 191 (249)
Q Consensus 159 ~gG~lv~k~~~~---------------~~~~~l~~~l~~~-f~~v~~~k 191 (249)
|||.|++..... ....++...+... |..+.+..
T Consensus 189 PGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 189 PGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 999999875321 1455677777654 77666643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-10 Score=90.36 Aligned_cols=96 Identities=10% Similarity=0.033 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..++.+.. .+|+++|+++.. .+++++++++|+.+..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~--------------~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~--- 116 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA--------------AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL--- 116 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC--------------SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH---
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC--------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---
Confidence 678999999999999998776532 589999999732 1357888999875421
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHH--HHhccCCCEEEEEEec
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV--THVLKEGGKFIAKIFR 169 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a--~~~Lk~gG~lv~k~~~ 169 (249)
....++||+|++|+++. .+ .. ...+... .++|+|||.+++....
T Consensus 117 ----~~~~~~fD~V~~~~p~~-~~----~~-------~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 117 ----AQKGTPHNIVFVDPPFR-RG----LL-------EETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ----SSCCCCEEEEEECCSSS-TT----TH-------HHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred ----hhcCCCCCEEEECCCCC-CC----cH-------HHHHHHHHhcCccCCCcEEEEEECC
Confidence 11346899999997632 11 11 1223333 3569999999986654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=85.27 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+|||+|||+|.++..++++. ..|+|+|+++.. .+ +++++++|+.+.. .
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~---------------~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~ 102 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG---------------WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL--P 102 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT---------------CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH--H
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC---------------CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH--H
Confidence 77899999999999999998763 349999999742 12 6888899886531 1
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
.... ..++||+|++|++.. + ..... . ..+.. .++|+|||.+++.+....
T Consensus 103 ~~~~--~~~~~D~i~~~~~~~--~--~~~~~-----~-~~~~~-~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 103 EAKA--QGERFTVAFMAPPYA--M--DLAAL-----F-GELLA-SGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp HHHH--TTCCEEEEEECCCTT--S--CTTHH-----H-HHHHH-HTCEEEEEEEEEEEETTS
T ss_pred hhhc--cCCceEEEEECCCCc--h--hHHHH-----H-HHHHh-hcccCCCcEEEEEeCCcc
Confidence 1111 234799999997643 1 12211 1 11222 589999999999766443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.6e-10 Score=96.88 Aligned_cols=93 Identities=26% Similarity=0.284 Sum_probs=70.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
++++.+|||+|||+|.++..+++..+ ..++|+++|+++.. .++++++..+|+.+...
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~ 140 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVG------------EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC------------TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc
Confidence 36889999999999999999998764 24789999999732 23568889999876321
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..++||+|+++...... . ..+.++|||||.+++.+.
T Consensus 141 --------~~~~fD~Iv~~~~~~~~-----~------------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 141 --------EFSPYDVIFVTVGVDEV-----P------------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp --------GGCCEEEEEECSBBSCC-----C------------HHHHHHEEEEEEEEEEBC
T ss_pred --------cCCCeEEEEEcCCHHHH-----H------------HHHHHhcCCCcEEEEEEC
Confidence 23579999999765322 1 235679999999998643
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-09 Score=88.06 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=72.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++.. ..|+++|+++.. ..++++++++|+.+.+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 96 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---------------GDTAGLELSEDMLTHARKRLPDATLHQGDMRDFR------- 96 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---------------SEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCC-------
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---------------CcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcc-------
Confidence 577899999999999999998874 389999998742 1367889999998753
Q ss_pred hcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 114 HFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 114 ~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+ .++||+|+|.. .+... .+. .....++..+.++|+|||.+++..+.
T Consensus 97 -~-~~~~D~v~~~~~~~~~~----~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 97 -L-GRKFSAVVSMFSSVGYL----KTT----EELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp -C-SSCEEEEEECTTGGGGC----CSH----HHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred -c-CCCCcEEEEcCchHhhc----CCH----HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2 46899999633 22211 111 11245788889999999999986553
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=88.78 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=76.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.++.+|||+|||+|.++..+++. + .+|+++|+++... -...+++.+|+.+... .+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~------~~ 89 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--------------TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDM------PY 89 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--------------CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCC------CS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--------------CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCC------CC
Confidence 57889999999999999998876 4 6999999987321 1123678888875211 13
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHH
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~ 179 (249)
.+++||+|++....... .+. ..++..+.++|+|||.+++.+........+...
T Consensus 90 ~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 142 (230)
T 3cc8_A 90 EEEQFDCVIFGDVLEHL----FDP-------WAVIEKVKPYIKQNGVILASIPNVSHISVLAPL 142 (230)
T ss_dssp CTTCEEEEEEESCGGGS----SCH-------HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHH
T ss_pred CCCccCEEEECChhhhc----CCH-------HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHH
Confidence 45789999997654321 121 256788899999999999987665555444443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-09 Score=89.06 Aligned_cols=97 Identities=26% Similarity=0.276 Sum_probs=69.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~ 109 (249)
+++.+|||+|||+|.++..+++. + ..|+|+|+++... -.+++++++|+.+.+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~--- 101 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER-G--------------YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA--- 101 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC---
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc---
Confidence 46789999999999999998875 3 6899999997320 125788999987643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ .++||+|++...... . ... .....++..+.++|+|||.+++.+.
T Consensus 102 -----~-~~~fD~v~~~~~~~~--~--~~~----~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 102 -----F-KNEFDAVTMFFSTIM--Y--FDE----EDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp -----C-CSCEEEEEECSSGGG--G--SCH----HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----c-CCCccEEEEcCCchh--c--CCH----HHHHHHHHHHHHHcCCCeEEEEecc
Confidence 2 368999998642111 0 111 1234578888999999999998543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=95.67 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=84.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C------CCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~------~~~v~~~~gDi~~ 104 (249)
.++.+|||+|||+|+++..+++..+ ..+|+++|+++.. . .++++++.+|+.+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~ 181 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS-------------VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK 181 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC-------------CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH
Confidence 3568999999999999999886532 4799999999731 1 2468888998754
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~ 179 (249)
. +. . ..++||+|++|..... +. . ..+. ...+..+.++|+|||.+++....+. ....+...
T Consensus 182 ~-----l~-~-~~~~fDvIi~d~~~p~-~~---~----~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 246 (321)
T 2pt6_A 182 F-----LE-N-VTNTYDVIIVDSSDPI-GP---A----ETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGY 246 (321)
T ss_dssp H-----HH-H-CCSCEEEEEEECCCSS-SG---G----GGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHH
T ss_pred H-----Hh-h-cCCCceEEEECCcCCC-Cc---c----hhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHH
Confidence 2 11 1 2468999999974211 11 0 0111 3567888999999999999654332 23456667
Q ss_pred HhcCCCeeEEe
Q 025715 180 LKLFFPVVTFA 190 (249)
Q Consensus 180 l~~~f~~v~~~ 190 (249)
++..|..+..+
T Consensus 247 l~~~F~~v~~~ 257 (321)
T 2pt6_A 247 AKKLFKKVEYA 257 (321)
T ss_dssp HHTTCSEEEEE
T ss_pred HHHHCCCeEEE
Confidence 77789888665
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=98.19 Aligned_cols=111 Identities=20% Similarity=0.197 Sum_probs=78.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~ 107 (249)
+++.+|||+|||+|+++..++.. + ..+|+|+|+++.. .+. +++++++|+.+..
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g-------------~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~- 280 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-G-------------ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM- 280 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH-
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHH-
Confidence 47899999999999999999875 3 3699999999842 133 6888999986532
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
..+.. ...+||+|++|++..... ..........+...+..+.++|+|||.+++..+..
T Consensus 281 -~~~~~--~~~~fD~Vi~dpP~~~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 281 -EKLQK--KGEKFDIVVLDPPAFVQH--EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp -HHHHH--TTCCEEEEEECCCCSCSS--GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred -HHHHh--hCCCCCEEEECCCCCCCC--HHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 11111 246899999997532211 11222233445678889999999999999877754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.95 E-value=8.8e-10 Score=93.24 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC---C---------------
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE---G--------------- 94 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~---~--------------- 94 (249)
++.+|||+|||+|.++..+++++.. +..+|+|+|+++... .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~-----------~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRR-----------SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERF 119 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGG-----------GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhcc-----------CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhc
Confidence 5679999999999999999887310 136899999997320 11 1
Q ss_pred --------------ce-------------EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 025715 95 --------------VI-------------QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLIL 147 (249)
Q Consensus 95 --------------v~-------------~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~ 147 (249)
++ +.++|+.+....... ....+||+|++|++......+..+ .......
T Consensus 120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~~~~~fD~Iv~npp~~~~~~~~~~--~~~~~~~ 194 (250)
T 1o9g_A 120 GKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV---LAGSAPDVVLTDLPYGERTHWEGQ--VPGQPVA 194 (250)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH---HTTCCCSEEEEECCGGGSSSSSSC--CCHHHHH
T ss_pred ccccchhhhhhhhhhhhhccccccccccceeecccccccccccc---cCCCCceEEEeCCCeecccccccc--ccccHHH
Confidence 55 888998874311000 023489999999754322111100 0123345
Q ss_pred HHHHHHHHhccCCCEEEEEEe
Q 025715 148 AGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 148 ~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.++..+.++|+|||.+++ +.
T Consensus 195 ~~l~~~~~~LkpgG~l~~-~~ 214 (250)
T 1o9g_A 195 GLLRSLASALPAHAVIAV-TD 214 (250)
T ss_dssp HHHHHHHHHSCTTCEEEE-EE
T ss_pred HHHHHHHHhcCCCcEEEE-eC
Confidence 678889999999999998 44
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-10 Score=88.80 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=69.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..++++ + ..+|+++|+++.. .+ ++++++++|+.+...
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 108 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-G-------------MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE 108 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-C-------------CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH
Confidence 46789999999999999988764 2 3699999999742 12 368889999865321
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
.+. ...++||+|++|++... ...... . ..+ .+.++|+|||.+++.+...
T Consensus 109 --~~~--~~~~~fD~i~~~~~~~~-----~~~~~~---~-~~l-~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 109 --QFY--EEKLQFDLVLLDPPYAK-----QEIVSQ---L-EKM-LERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp --HHH--HTTCCEEEEEECCCGGG-----CCHHHH---H-HHH-HHTTCEEEEEEEEEEEETT
T ss_pred --HHH--hcCCCCCEEEECCCCCc-----hhHHHH---H-HHH-HHhcccCCCCEEEEEeCCc
Confidence 111 12468999999975321 111111 1 112 2378999999999876544
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-09 Score=95.29 Aligned_cols=117 Identities=11% Similarity=0.029 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..+++..+ ..+|+++|+++... -..++++.+|+.+.
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~-------------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~----- 257 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSP-------------KIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE----- 257 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCT-------------TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT-----
T ss_pred CCCeEEEecCccCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc-----
Confidence 467999999999999999988753 46999999998421 11256778888653
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCeeEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~v~~ 189 (249)
..++||+|++++.+.. |.. .........+..+.++|||||.+++...........+ ...|..+..
T Consensus 258 -----~~~~fD~Iv~~~~~~~-g~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l---~~~f~~~~~ 322 (343)
T 2pjd_A 258 -----VKGRFDMIISNPPFHD-GMQ-----TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVL---DETFGFHEV 322 (343)
T ss_dssp -----CCSCEEEEEECCCCCS-SSH-----HHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHH---HHHHSCCEE
T ss_pred -----ccCCeeEEEECCCccc-Ccc-----CCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHH---HHhcCceEE
Confidence 2468999999986542 110 1122345678999999999999999766555554443 334554444
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=95.94 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=70.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++. + ..+|+|+|++++. .+ ++++++++|+.+.+
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g-------------~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 126 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-G-------------AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-- 126 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-C-------------CCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc--
Confidence 57789999999999999988875 3 2699999999742 12 57889999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
++.++||+|+++...... .... ....++..+.++|||||.++
T Consensus 127 ------~~~~~~D~Ivs~~~~~~l--~~~~------~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 ------LPVEKVDVIISEWMGYFL--LFES------MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ------CSCSCEEEEEECCCBTTB--TTTC------HHHHHHHHHHHHEEEEEEEE
T ss_pred ------CCCCcEEEEEEcCchhhc--cCHH------HHHHHHHHHHhhcCCCcEEE
Confidence 345789999998632211 1111 12346777889999999998
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.3e-09 Score=89.98 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=82.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------------CCCCceEe
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------PIEGVIQV 98 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------------~~~~v~~~ 98 (249)
.++.+|||+|||+|+++..++++ + ..+|++||+++.. ..++++++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~-------------~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~ 139 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-D-------------VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT 139 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-------------CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-C-------------CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEE
Confidence 35689999999999999998876 4 3699999998721 12467888
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCC-C---H
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGK-D---T 173 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~-~---~ 173 (249)
.+|..+. +. . .++||+|++|..... +. . ..+ ....+..+.++|+|||.+++...... . .
T Consensus 140 ~~D~~~~-----l~-~--~~~fD~Ii~d~~~~~-~~---~----~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~ 203 (281)
T 1mjf_A 140 IGDGFEF-----IK-N--NRGFDVIIADSTDPV-GP---A----KVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDEL 203 (281)
T ss_dssp ESCHHHH-----HH-H--CCCEEEEEEECCCCC-------------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHH
T ss_pred ECchHHH-----hc-c--cCCeeEEEECCCCCC-Cc---c----hhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHH
Confidence 8886432 22 2 468999999975321 11 0 011 13567788999999999998754332 2 3
Q ss_pred HHHHHHHhcCCCeeEEe
Q 025715 174 SLLYCQLKLFFPVVTFA 190 (249)
Q Consensus 174 ~~l~~~l~~~f~~v~~~ 190 (249)
..+...++..|..+..+
T Consensus 204 ~~~~~~l~~~f~~v~~~ 220 (281)
T 1mjf_A 204 ISAYKEMKKVFDRVYYY 220 (281)
T ss_dssp HHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHCCceEEE
Confidence 44556666678887764
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-10 Score=98.98 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=75.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.+|.+|||+|||+|+++.. ++ + ..+|+|+|+++.+ .+ .+++++++|+.+.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~-------------~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~-- 255 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--N-------------AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV-- 255 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--T-------------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC--
T ss_pred CCCCEEEEccCccCHHHHh-cc--C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh--
Confidence 5789999999999999998 75 2 3799999999832 13 4688999998763
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
. .+||+|++|++... ...+..+.++|+|||.+++..+... ...+...+...
T Consensus 256 --------~-~~fD~Vi~dpP~~~---------------~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~ 306 (336)
T 2yx1_A 256 --------D-VKGNRVIMNLPKFA---------------HKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKK 306 (336)
T ss_dssp --------C-CCEEEEEECCTTTG---------------GGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHH
T ss_pred --------c-CCCcEEEECCcHhH---------------HHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHh
Confidence 1 68999999974321 1356778899999999998777655 45555555543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=94.47 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=84.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C------CCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~------~~~v~~~~gDi~~ 104 (249)
.++.+|||+|||+|+++..+++.. +..+|++||+++.. . .++++++.+|..+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-------------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 143 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-------------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK 143 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-------------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-------------CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH
Confidence 356899999999999999988653 24799999999731 1 2568888888754
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~ 179 (249)
. +. . ..++||+|++|..... +. . ..+. ...+..+.++|+|||.|++...... ....+...
T Consensus 144 ~-----l~-~-~~~~fD~Ii~d~~~~~-~~---~----~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~ 208 (283)
T 2i7c_A 144 F-----LE-N-VTNTYDVIIVDSSDPI-GP---A----ETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGY 208 (283)
T ss_dssp H-----HH-H-CCSCEEEEEEECCCTT-TG---G----GGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHH
T ss_pred H-----HH-h-CCCCceEEEEcCCCCC-Cc---c----hhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHH
Confidence 2 11 1 2468999999974221 11 1 0111 3578888999999999998754322 23456666
Q ss_pred HhcCCCeeEEe
Q 025715 180 LKLFFPVVTFA 190 (249)
Q Consensus 180 l~~~f~~v~~~ 190 (249)
++..|..+..+
T Consensus 209 l~~~F~~v~~~ 219 (283)
T 2i7c_A 209 AKKLFKKVEYA 219 (283)
T ss_dssp HHTTCSEEEEE
T ss_pred HHHHCCceEEE
Confidence 77789888654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=90.69 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=70.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|..+..+++.++ +.++|+++|+++.. .+ .+++++.+|..+.
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~------------~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-- 143 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIP------------EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-- 143 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSC------------TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH--
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH--
Confidence 3568999999999999999998875 35899999999842 12 3578888987542
Q ss_pred HHHHHH-hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIR-HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~-~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+.. ....++||+|++|+... + ....+..+.++|||||.+++-
T Consensus 144 l~~l~~~~~~~~~fD~V~~d~~~~-------~-------~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 144 LDEMIKDEKNHGSYDFIFVDADKD-------N-------YLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp HHHHHHSGGGTTCBSEEEECSCST-------T-------HHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHhccCCCCCEEEEEEcCchH-------H-------HHHHHHHHHHhCCCCeEEEEe
Confidence 111110 00146899999986421 1 124677888999999999974
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=85.76 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~ 108 (249)
++.+|||+|||+|.++..++++.+ ..+|+|+|+++.. .+. +++++++|+.+.-
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 129 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-------------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL-- 129 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-------------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS--
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh--
Confidence 577999999999999999988764 4799999999732 133 4889999976520
Q ss_pred HHHHHhcC---CCcccEEEeCCCCCCCCC--CC-----c---C-H-H------------HHHHHHHHHHHHHHHhccCCC
Q 025715 109 EVVIRHFD---GCKADLVVCDGAPDVTGL--HD-----M---D-E-F------------VQSQLILAGLTVVTHVLKEGG 161 (249)
Q Consensus 109 ~~i~~~~~---~~~~DlVlsD~~~~~~g~--~~-----~---~-~-~------------~~~~l~~~~l~~a~~~Lk~gG 161 (249)
.+.+. +++||+|++|++....+. .. . . . . ....++...+..+.++|+++|
T Consensus 130 ---~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g 206 (254)
T 2h00_A 130 ---MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLR 206 (254)
T ss_dssp ---TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBS
T ss_pred ---hhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceE
Confidence 00122 258999999975432220 00 0 0 0 0 012233445556677889999
Q ss_pred EEEEEEecCCCHHHHHHHHhcC-CCeeEEe
Q 025715 162 KFIAKIFRGKDTSLLYCQLKLF-FPVVTFA 190 (249)
Q Consensus 162 ~lv~k~~~~~~~~~l~~~l~~~-f~~v~~~ 190 (249)
.+.+.........++...++.. |..|.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 207 WYSCMLGKKCSLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred EEEECCCChhHHHHHHHHHHHcCCCceEEE
Confidence 8876554444446666666654 8877764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=91.52 Aligned_cols=100 Identities=14% Similarity=-0.000 Sum_probs=68.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC--C-------C------CCCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--M-------A------PIEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~--~-------~------~~~~v~~~~gDi~~ 104 (249)
+++.+|||+|||+|.++..++++. +...|+|+|+++ + + .++++.++++|+.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~-------------~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIND-------------QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTC-------------TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhC-------------CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 678999999999999999998654 357899999994 2 1 13578889999877
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+. .+. ..+|.|.++..... . ...........+..+.++|||||.|++
T Consensus 90 l~~------~~~-d~v~~i~~~~~~~~-----~-~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 90 LPF------ELK-NIADSISILFPWGT-----L-LEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp CCG------GGT-TCEEEEEEESCCHH-----H-HHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred hhh------hcc-CeEEEEEEeCCCcH-----H-hhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 531 112 46777776542110 0 000000013468889999999999998
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.1e-09 Score=91.18 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=65.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeE--EEecCCCCC------------CCCCceE--eecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLI--VAIDLQPMA------------PIEGVIQ--VQGDIT 103 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~v--vavDi~~~~------------~~~~v~~--~~gDi~ 103 (249)
.++.+|||+|||+|.++..++..+... .+...| +++|.++.. .++++.+ .++|+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~---------~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~ 121 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQ---------YPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS 121 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHH---------STTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhh---------CCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh
Confidence 567899999999999887554433100 013444 999999731 1234433 233332
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.. ......+.+++||+|++.....+. .+. ..++..+.++|||||.|++....
T Consensus 122 ~~~--~~~~~~~~~~~fD~V~~~~~l~~~----~d~-------~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 122 EYQ--SRMLEKKELQKWDFIHMIQMLYYV----KDI-------PATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHH--HHHHTTTCCCCEEEEEEESCGGGC----SCH-------HHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhh--hhhccccCCCceeEEEEeeeeeec----CCH-------HHHHHHHHHHcCCCcEEEEEEec
Confidence 110 000001346789999997654432 122 25788899999999999986543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=90.22 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=81.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCC-----------------
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEG----------------- 94 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~----------------- 94 (249)
.++.+|||+|||+|.++..++.... ..|+|+|+++.. ...+
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--------------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--------------TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEG 120 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--------------EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--------------CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccc
Confidence 4678999999999999888775421 489999999732 0111
Q ss_pred ---------------c-eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc
Q 025715 95 ---------------V-IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 95 ---------------v-~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (249)
+ ++.++|+.+.... .....++||+|++........ .. ......++..+.++||
T Consensus 121 ~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~----~~~~~~~fD~v~~~~~l~~~~---~~----~~~~~~~l~~~~~~Lk 189 (265)
T 2i62_A 121 NRMKGPEKEEKLRRAIKQVLKCDVTQSQPL----GGVSLPPADCLLSTLCLDAAC---PD----LPAYRTALRNLGSLLK 189 (265)
T ss_dssp TCSCHHHHHHHHHHHEEEEEECCTTSSSTT----TTCCCCCEEEEEEESCHHHHC---SS----HHHHHHHHHHHHTTEE
T ss_pred cccchHHHHHHhhhhheeEEEeeeccCCCC----CccccCCccEEEEhhhhhhhc---CC----hHHHHHHHHHHHhhCC
Confidence 6 7889999875310 001227899999975432100 01 1123467888899999
Q ss_pred CCCEEEEEEec---------------CCCHHHHHHHHhcC-CCeeEEe
Q 025715 159 EGGKFIAKIFR---------------GKDTSLLYCQLKLF-FPVVTFA 190 (249)
Q Consensus 159 ~gG~lv~k~~~---------------~~~~~~l~~~l~~~-f~~v~~~ 190 (249)
|||.|++.... .....++...+... |..+.+.
T Consensus 190 pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 190 PGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 99999986532 12344676766654 7766654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-09 Score=91.49 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC-----CCceEeecCCCChh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-----EGVIQVQGDITNAR 106 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~-----~~v~~~~gDi~~~~ 106 (249)
++.+|||+|||+|.++..++++ + ..|+|+|+++.. .. .+++++++|+.+.+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL-G--------------WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT-T--------------CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred CCCcEEEEeccCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3459999999999999999875 3 689999999732 11 46889999998753
Q ss_pred hHHHHHHhcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 107 TAEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+ +++||+|++.. .... .+. .....++..+.++|||||.|++.++.
T Consensus 147 --------~-~~~fD~v~~~~~~~~~-----~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 147 --------L-DKRFGTVVISSGSINE-----LDE----ADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp --------C-SCCEEEEEECHHHHTT-----SCH----HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------c-CCCcCEEEECCccccc-----CCH----HHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 2 47899998642 1211 121 11246788899999999999998764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=88.46 Aligned_cols=92 Identities=21% Similarity=0.197 Sum_probs=69.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++..+ +..+|+++|+++.. .++++++.++|+....
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 141 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVG------------EDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY-- 141 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC------------TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC--
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC--
Confidence 5788999999999999999998874 34799999999732 2356888889885421
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...++||+|+++...... . ..+.++|||||.+++.+.
T Consensus 142 ------~~~~~fD~v~~~~~~~~~-----~------------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 142 ------EPLAPYDRIYTTAAGPKI-----P------------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp ------GGGCCEEEEEESSBBSSC-----C------------HHHHHTEEEEEEEEEEES
T ss_pred ------CCCCCeeEEEECCchHHH-----H------------HHHHHHcCCCcEEEEEEC
Confidence 013579999998754321 1 256789999999999654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=97.61 Aligned_cols=110 Identities=17% Similarity=0.116 Sum_probs=74.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-C-CceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-E-GVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~-~v~~~~gDi~~~~ 106 (249)
.++.+|||+|||+|+++..++... ..+|+|+|+++.+ .+ . +++++++|+.+..
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g--------------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~ 284 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG--------------CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT--------------CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC--------------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH
Confidence 478899999999999999998752 2699999999732 23 4 6788999986532
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
..+.. .+.+||+|++|++.......... .....+...+..+.++|+|||.+++....
T Consensus 285 --~~~~~--~~~~fD~Ii~dpP~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 285 --RTYRD--RGEKFDVIVMDPPKFVENKSQLM--GACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp --HHHHH--TTCCEEEEEECCSSTTTCSSSSS--CCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred --HHHHh--cCCCCCEEEECCCCCCCChhHHH--HHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 11111 24689999999753211111100 00112345678889999999999987764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-09 Score=94.23 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------C-CCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I-EGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~-~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++. + ..+|+|+|++++.. + .+++++++|+.+..
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~-g-------------~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 125 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQA-G-------------ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS-- 125 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHT-T-------------CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC--
T ss_pred CCCCEEEEeccCcCHHHHHHHhc-C-------------CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC--
Confidence 57889999999999999999876 3 25999999995421 2 34889999997753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
++ ++||+|+++......... .. ...++..+.++|||||.|++
T Consensus 126 ------~~-~~~D~Iv~~~~~~~l~~e-~~-------~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 126 ------LP-EKVDVIISEWMGYFLLRE-SM-------FDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp ------CS-SCEEEEEECCCBTTBTTT-CT-------HHHHHHHHHHHEEEEEEEES
T ss_pred ------cC-CcceEEEEcChhhcccch-HH-------HHHHHHHHHhhCCCCeEEEE
Confidence 23 789999998643322110 11 23467777899999999985
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-09 Score=93.89 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=71.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~ 104 (249)
.++.+|||+|||+|.++..+++. + .+|+|+|+++.. ...++.+..+|+.+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE-G--------------FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred cCCCEEEEecCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 46789999999999999999875 3 599999999732 01356778888876
Q ss_pred hhhHHHHHHhcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+. +.+..++||+|++.+ ..........+. +....++..+.++|||||.|++.+.
T Consensus 121 ~~~-----~~~~~~~fD~V~~~g~~l~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 121 LDK-----DVPAGDGFDAVICLGNSFAHLPDSKGDQ----SEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHH-----HSCCTTCEEEEEECTTCGGGSCCSSSSS----HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred Ccc-----ccccCCCeEEEEEcChHHhhcCccccCH----HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 431 113567999999973 332211100000 1124578899999999999998654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-09 Score=94.26 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------C-CCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~-~~v~~~~gDi~~~~~~~ 109 (249)
+|.+|||+|||+|.++..+++. + ..+|+|||.+++.. + ..++++++|+.+.+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-G-------------A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--- 145 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-G-------------ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE--- 145 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC---
T ss_pred CCCEEEEeCCCccHHHHHHHHh-C-------------CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeec---
Confidence 6889999999999999877764 3 36899999998641 2 35889999998754
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
++ ++||+|+|...-... .... ++...+....++|||||.++
T Consensus 146 -----lp-e~~DvivsE~~~~~l-~~e~-------~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 146 -----LP-EQVDAIVSEWMGYGL-LHES-------MLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp -----CS-SCEEEEECCCCBTTB-TTTC-------SHHHHHHHHHHHEEEEEEEE
T ss_pred -----CC-ccccEEEeecccccc-cccc-------hhhhHHHHHHhhCCCCceEC
Confidence 23 689999997532111 1100 12345566678999999987
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=93.70 Aligned_cols=106 Identities=16% Similarity=0.096 Sum_probs=73.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------------CCCCceEeecC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PIEGVIQVQGD 101 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------~~~~v~~~~gD 101 (249)
.++.+|||+|||+|.++..+++.. ...|+++|+++.. ...+++++++|
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~--------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D 98 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGR--------------INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTT--------------CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred CCCCEEEEECCCCcHHHHHHHhcC--------------CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence 467899999999999999888742 3699999999732 11257889999
Q ss_pred CCChhhHHHHHHhcC--CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 102 ITNARTAEVVIRHFD--GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 102 i~~~~~~~~i~~~~~--~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+.+.+.. ..+. .++||+|++..+..+.- .+. .....++..+.++|||||.|++.++..
T Consensus 99 ~~~~~~~----~~~~~~~~~fD~V~~~~~l~~~~---~~~----~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 99 SSKELLI----DKFRDPQMCFDICSCQFVCHYSF---ESY----EQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TTTSCST----TTCSSTTCCEEEEEEETCGGGGG---GSH----HHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccccchh----hhcccCCCCEEEEEEecchhhcc---CCH----HHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 9875310 0122 34899999987543310 111 112467888999999999999977643
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-09 Score=88.04 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=70.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+ .+++++++|+.+.
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-- 133 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALP------------ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET-- 133 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC------------TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH--
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH--
Confidence 4678999999999999999998764 35799999999842 12 4688889987542
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+...-..++||+|++|+... + ....+..+.++|+|||.+++.
T Consensus 134 ~~~~~~~~~~~~~D~v~~d~~~~-------~-------~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 134 LDELLAAGEAGTFDVAVVDADKE-------N-------CSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HHHHHHTTCTTCEEEEEECSCST-------T-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhcCCCCCccEEEECCCHH-------H-------HHHHHHHHHHHcCCCeEEEEE
Confidence 11221100115899999986411 1 124677888999999999984
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-09 Score=94.77 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++. + ..+|+|+|++++. .+ ++++++.+|+.+.+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~-g-------------~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 112 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQA-G-------------ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-- 112 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC--
T ss_pred CCcCEEEEcCCCccHHHHHHHhC-C-------------CCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC--
Confidence 47789999999999999988875 3 3699999999742 12 46889999998743
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
++ ++||+|++++....... .. ....+..+.++|||||.+++.
T Consensus 113 ------~~-~~~D~Ivs~~~~~~~~~--~~-------~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 113 ------LP-EQVDIIISEPMGYMLFN--ER-------MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp ------CS-SCEEEEEECCCBTTBTT--TS-------HHHHHHHGGGGEEEEEEEESC
T ss_pred ------CC-CceeEEEEeCchhcCCh--HH-------HHHHHHHHHhhcCCCeEEEEe
Confidence 22 58999999864322111 11 123456778999999999854
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-09 Score=87.21 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=71.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ .++|+++|+++.. .+ .+++++++|+.+...
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 119 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALP-------------EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE 119 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCT-------------TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH
Confidence 4778999999999999999998863 4799999999732 12 358889999876311
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
....+++||+|++|.... + ....+..+.++|+|||.+++.
T Consensus 120 -----~~~~~~~fD~I~~~~~~~-------~-------~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 120 -----KLELYPLFDVLFIDAAKG-------Q-------YRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp -----HHTTSCCEEEEEEEGGGS-------C-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred -----hcccCCCccEEEECCCHH-------H-------HHHHHHHHHHHcCCCeEEEEE
Confidence 111136899999986421 1 134678889999999999986
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-09 Score=92.84 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=68.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++. + ..+|+|+|++++. .+ .+++++++|+.+.+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g-------------~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 100 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-G-------------AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-- 100 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-C-------------CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--
T ss_pred cCCCEEEEecCccHHHHHHHHHC-C-------------CCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc--
Confidence 46789999999999999988875 3 3699999999642 12 35888999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
++.++||+|+++...... .... ....++..+.++|||||.++
T Consensus 101 ------~~~~~~D~Ivs~~~~~~l--~~~~------~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 101 ------LPFPKVDIIISEWMGYFL--LYES------MMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ------CSSSCEEEEEECCCBTTB--STTC------CHHHHHHHHHHHEEEEEEEE
T ss_pred ------CCCCcccEEEEeCchhhc--ccHH------HHHHHHHHHHhhcCCCeEEE
Confidence 344789999998532211 1111 11245677789999999997
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-09 Score=92.67 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=82.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C------CCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~------~~~v~~~~gDi~~ 104 (249)
.++.+|||||||+|.++..++++. +..+|++||+++.. . .++++++.+|..+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-------------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 160 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-------------SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE 160 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-------------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-------------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence 356899999999999999988753 24799999999731 1 2468888888754
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC----HHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQL 180 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~~~l~~~l 180 (249)
. +. . ..++||+|++|..... +. .. .......+..+.++|+|||.|++....... ...+...+
T Consensus 161 ~-----l~-~-~~~~fD~Ii~d~~~~~-~~---~~---~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 226 (304)
T 2o07_A 161 F-----MK-Q-NQDAFDVIITDSSDPM-GP---AE---SLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFC 226 (304)
T ss_dssp H-----HH-T-CSSCEEEEEEECC------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHH
T ss_pred H-----Hh-h-CCCCceEEEECCCCCC-Cc---ch---hhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHH
Confidence 2 11 1 3468999999974221 10 00 001234678889999999999987643322 34555667
Q ss_pred hcCCCeeEEe
Q 025715 181 KLFFPVVTFA 190 (249)
Q Consensus 181 ~~~f~~v~~~ 190 (249)
+..|..+.+.
T Consensus 227 ~~~f~~v~~~ 236 (304)
T 2o07_A 227 QSLFPVVAYA 236 (304)
T ss_dssp HHHCSEEEEE
T ss_pred HHhCCCceeE
Confidence 7789888765
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.5e-09 Score=88.49 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=70.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|..+..+++.++ +.++|+++|+++.. .+ .+++++.+|..+.
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-- 134 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIP------------DDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA-- 134 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSC------------TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--
Confidence 4668999999999999999999875 35899999999732 12 2578888987542
Q ss_pred HHHHHHh-cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRH-FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~-~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+... ...++||+|++|.... + ....+..+.++|+|||.+++-
T Consensus 135 l~~l~~~~~~~~~fD~I~~d~~~~-------~-------~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 135 LDNLLQGQESEGSYDFGFVDADKP-------N-------YIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp HHHHHHSTTCTTCEEEEEECSCGG-------G-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCCCcCEEEECCchH-------H-------HHHHHHHHHHhcCCCeEEEEe
Confidence 1111110 0146899999986321 1 134677888999999999985
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-08 Score=90.30 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=77.6
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC----CCCCCceEeecCCCC
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITN 104 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~----~~~~~v~~~~gDi~~ 104 (249)
..++.+.+.-+.++.+|||+|||+|.++..++++.+ ..+++++|+..+ ...++++++.+|+.+
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~-------------~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 263 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP-------------LIKGINFDLPQVIENAPPLSGIEHVGGDMFA 263 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCCTTEEEEECCTTT
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCC-------------CCeEEEeChHHHHHhhhhcCCCEEEeCCccc
Confidence 345666665456778999999999999999998864 578999998222 124679999999976
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ ++ . +|+|++...... .+.. .+..++..+.++|+|||.+++..+
T Consensus 264 ~---------~~-~-~D~v~~~~~lh~-----~~d~----~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 264 S---------VP-Q-GDAMILKAVCHN-----WSDE----KCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp C---------CC-C-EEEEEEESSGGG-----SCHH----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C---------CC-C-CCEEEEeccccc-----CCHH----HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 2 23 2 999998754321 2221 123578889999999999998644
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=91.13 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=70.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-----CCCceEeecCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-----IEGVIQVQGDI 102 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-----~~~v~~~~gDi 102 (249)
++++.+|||+|||+|.++..+++..+...+ ...++|+++|+++.. . ..+++++.+|+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 154 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGV-------DADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCC-------CTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccC-------CccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc
Confidence 468899999999999999999987641000 002599999999732 1 35788889998
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+... ..++||+|+++..... ....+.+.|||||.+++.+..
T Consensus 155 ~~~~~--------~~~~fD~I~~~~~~~~-----------------~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 155 RKGYP--------PNAPYNAIHVGAAAPD-----------------TPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GGCCG--------GGCSEEEEEECSCBSS-----------------CCHHHHHTEEEEEEEEEEESC
T ss_pred ccCCC--------cCCCccEEEECCchHH-----------------HHHHHHHHhcCCCEEEEEEec
Confidence 75210 1257999999875432 123567899999999997653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-09 Score=89.10 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=71.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-----CCCceEeecCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-----IEGVIQVQGDI 102 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-----~~~v~~~~gDi 102 (249)
++++.+|||+|||+|.++..+++..+.. .++.++|+++|+++.. . ..+++++.+|+
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~--------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 149 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVL--------ENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI 149 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTT--------TCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhccc--------CCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence 4678999999999999999999875300 0024699999999732 1 34788999998
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+.... .. ...++||+|+++..... .+..+.++|+|||.+++.+..
T Consensus 150 ~~~~~~-~~---~~~~~fD~I~~~~~~~~-----------------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 150 YQVNEE-EK---KELGLFDAIHVGASASE-----------------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp GGCCHH-HH---HHHCCEEEEEECSBBSS-----------------CCHHHHHHEEEEEEEEEEEEE
T ss_pred Hhcccc-cC---ccCCCcCEEEECCchHH-----------------HHHHHHHhcCCCcEEEEEEcc
Confidence 763210 00 11357999999875431 134567899999999996543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-09 Score=88.68 Aligned_cols=93 Identities=18% Similarity=0.048 Sum_probs=68.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+ .+++++++|..+.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 120 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAIS------------ISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI-- 120 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSC------------TTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH--
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH--
Confidence 3668999999999999999998764 35799999999732 12 2578888887542
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+ .+ ||+|++|.... + ....+..+.++|+|||.+++.
T Consensus 121 ----~~~~-~~-fD~v~~~~~~~-------~-------~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 121 ----AAGQ-RD-IDILFMDCDVF-------N-------GADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp ----HTTC-CS-EEEEEEETTTS-------C-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred ----hccC-CC-CCEEEEcCChh-------h-------hHHHHHHHHHhcCCCeEEEEE
Confidence 1122 35 99999985311 1 124678889999999999974
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=91.19 Aligned_cols=108 Identities=17% Similarity=-0.014 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCC-hhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN-ARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~-~~~~ 108 (249)
++.+|||+| |+|.++..++... +..+|+++|+++.. .+.+++++++|+.+ .+.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~-------------~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~- 236 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSG-------------LPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD- 236 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHT-------------CCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT-
T ss_pred CCCEEEEEC-CCCHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh-
Confidence 578999999 9999999998753 24799999999732 13478999999987 220
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEE-EEEEec-CCCH---HHHHHHHh
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKF-IAKIFR-GKDT---SLLYCQLK 181 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~l-v~k~~~-~~~~---~~l~~~l~ 181 (249)
...++||+|++|+++... . ....+..+.++|+|||++ ++.+.. .... ..+...+.
T Consensus 237 ------~~~~~fD~Vi~~~p~~~~-----------~-~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~ 296 (373)
T 2qm3_A 237 ------YALHKFDTFITDPPETLE-----------A-IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLL 296 (373)
T ss_dssp ------TTSSCBSEEEECCCSSHH-----------H-HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHH
T ss_pred ------hccCCccEEEECCCCchH-----------H-HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHH
Confidence 013589999999753221 1 256788899999999954 554443 2444 44555554
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-10 Score=97.12 Aligned_cols=90 Identities=20% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
++.+|||+|||+|.++..+++. + .+|+|+|+++.. .+ ++++++++|+.+..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 140 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-G--------------MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-- 140 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--
T ss_pred CCCEEEECccccCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--
Confidence 7899999999999999999875 2 699999999842 12 46889999986642
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...+||+|++|++....+.. . ..+..+.++|+|||.+++
T Consensus 141 -------~~~~~D~v~~~~~~~~~~~~--~---------~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 141 -------SFLKADVVFLSPPWGGPDYA--T---------AETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp -------GGCCCSEEEECCCCSSGGGG--G---------SSSBCTTTSCSSCHHHHH
T ss_pred -------ccCCCCEEEECCCcCCcchh--h---------hHHHHHHhhcCCcceeHH
Confidence 24689999999865432211 0 012234567777777554
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.85 E-value=8.5e-09 Score=90.74 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=81.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C------CCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~------~~~v~~~~gDi~~ 104 (249)
.++.+|||+|||+|+.+..+++.. +..+|+++|+++.. . .++++++.+|+.+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-------------~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~ 173 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-------------SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE 173 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-------------TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-------------CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHH
Confidence 355799999999999999988753 24799999999731 1 2467888888754
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~ 179 (249)
. +. . ..++||+|++|..... + .. ..+. ...+..+.++|+|||.+++..-... ....+...
T Consensus 174 ~-----l~-~-~~~~fD~Ii~d~~~~~-~---~~----~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 238 (314)
T 2b2c_A 174 F-----LK-N-HKNEFDVIITDSSDPV-G---PA----ESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAF 238 (314)
T ss_dssp H-----HH-H-CTTCEEEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHH
T ss_pred H-----HH-h-cCCCceEEEEcCCCCC-C---cc----hhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHH
Confidence 2 11 1 3468999999974211 1 00 1122 4678889999999999998653222 13345566
Q ss_pred HhcCCCeeEEe
Q 025715 180 LKLFFPVVTFA 190 (249)
Q Consensus 180 l~~~f~~v~~~ 190 (249)
++..|..+.++
T Consensus 239 l~~vF~~v~~~ 249 (314)
T 2b2c_A 239 NRKIFPAVTYA 249 (314)
T ss_dssp HHHHCSEEEEE
T ss_pred HHHHCCcceEE
Confidence 77779887654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-09 Score=88.16 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=66.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..+++.. .+|+++|+++.. ...+++++++|+.+..
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~---- 129 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV---------------DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY---- 129 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---------------SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC----
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc---------------CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc----
Confidence 578899999999999999998763 599999999732 1126888999987521
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...++||+|+++..... .. ..+.++|+|||.+++.+.
T Consensus 130 ----~~~~~fD~v~~~~~~~~-----~~------------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 130 ----EEEKPYDRVVVWATAPT-----LL------------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp ----GGGCCEEEEEESSBBSS-----CC------------HHHHHTEEEEEEEEEEEC
T ss_pred ----ccCCCccEEEECCcHHH-----HH------------HHHHHHcCCCcEEEEEEc
Confidence 02368999999875432 11 236789999999999654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=87.29 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=66.1
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+.++.+|||+|||+|.++..++++ + .+|+|+|+++... .... .+++|+.+.... ..
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~-g--------------~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~--~~ 104 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALER-G--------------ASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAE--IP 104 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSC--CC
T ss_pred CCCcCEEEEEeCcchHHHHHHHhc-C--------------CEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccc--cc
Confidence 367899999999999999999875 2 6999999998320 1111 234444432210 00
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
..+ .++||+|+++...... ... -...++..+.++| |||.+++.+..+
T Consensus 105 ~~~-~~~fD~Vv~~~~l~~~-----~~~----~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 105 KEL-AGHFDFVLNDRLINRF-----TTE----EARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp GGG-TTCCSEEEEESCGGGS-----CHH----HHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred ccc-CCCccEEEEhhhhHhC-----CHH----HHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 011 3689999998754321 111 1234677778899 999999876544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.3e-09 Score=92.82 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=80.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------C--CCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------P--IEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~--~~~v~~~~gDi~~ 104 (249)
.++.+|||+|||+|.++..++++.+ ..+|++||+++.. . .++++++.+|+.+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~-------------~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~ 185 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS-------------IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA 185 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC-------------CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH
Confidence 4568999999999999999887542 4799999999731 1 2468889998754
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCC----HHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~~~l~~~ 179 (249)
. ...+..++||+|++|..... +. .+ .+ ....+..+.++|+|||.|++..-.... ...+...
T Consensus 186 ~------l~~~~~~~fDlIi~d~~~p~-~~--~~-----~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 251 (334)
T 1xj5_A 186 F------LKNAAEGSYDAVIVDSSDPI-GP--AK-----ELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSN 251 (334)
T ss_dssp H------HHTSCTTCEEEEEECCCCTT-SG--GG-----GGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHH
T ss_pred H------HHhccCCCccEEEECCCCcc-Cc--ch-----hhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHH
Confidence 2 11233468999999974211 11 01 01 135788899999999999986332221 2344555
Q ss_pred HhcCCCe
Q 025715 180 LKLFFPV 186 (249)
Q Consensus 180 l~~~f~~ 186 (249)
++..|..
T Consensus 252 l~~~F~~ 258 (334)
T 1xj5_A 252 CREIFKG 258 (334)
T ss_dssp HHHHCSS
T ss_pred HHHhCcc
Confidence 6667874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7e-08 Score=82.72 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C---------CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---------IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~---------~~~v~~~~gDi~~~ 105 (249)
.+.+|||+|||+|+.+..+++. + .+|++||+++.. . .++++++.+|..+.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~--------------~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~ 136 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D--------------THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD 136 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S--------------CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C--------------CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH
Confidence 4579999999999999887765 3 699999998721 1 13577788887652
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC-C---HHHHHHHHh
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-D---TSLLYCQLK 181 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~-~---~~~l~~~l~ 181 (249)
+ ++||+|++|... .. ..+..+.+.|+|||.|++....+. . ...+...++
T Consensus 137 ---------~--~~fD~Ii~d~~d--------p~--------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~ 189 (262)
T 2cmg_A 137 ---------I--KKYDLIFCLQEP--------DI--------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMG 189 (262)
T ss_dssp ---------C--CCEEEEEESSCC--------CH--------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHH
T ss_pred ---------H--hhCCEEEECCCC--------hH--------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHH
Confidence 1 579999999521 11 157788999999999998754432 2 344556677
Q ss_pred cCCCeeEEec
Q 025715 182 LFFPVVTFAK 191 (249)
Q Consensus 182 ~~f~~v~~~k 191 (249)
..|..+..+.
T Consensus 190 ~~F~~~~~~~ 199 (262)
T 2cmg_A 190 GVFSVAMPFV 199 (262)
T ss_dssp TTCSEEEEEC
T ss_pred HhCCceEEEE
Confidence 7898887653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.4e-09 Score=87.27 Aligned_cols=100 Identities=22% Similarity=0.292 Sum_probs=70.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+. +++++.+|+.+.
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-- 124 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALP------------EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET-- 124 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSC------------TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH--
Confidence 4678999999999999999998874 35799999999732 122 378888887542
Q ss_pred HHHHHH---------hcCC--CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIR---------HFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~---------~~~~--~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
...+.. .++. ++||+|+++... .. ....+..+.++|+|||.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~--------~~------~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 125 LQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK--------EN------YPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG--------GG------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHhhcccccccccccCCCCCcCEEEEeCCH--------HH------HHHHHHHHHHHcCCCeEEEEEc
Confidence 111111 1222 689999998531 11 1246778899999999999864
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-09 Score=88.58 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=69.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++. + ..|+++|+++... ..+ .++++|+.+.+
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~------- 109 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER-G--------------FEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLP------- 109 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT-T--------------CEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCC-------
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc-C--------------CeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCC-------
Confidence 47789999999999999998865 3 5899999997321 122 27788887643
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+.+++||+|++....... ..+ ...++..+.++|||||.+++.+..
T Consensus 110 -~~~~~fD~v~~~~~~~~~---~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 110 -FPSGAFEAVLALGDVLSY---VEN-------KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp -SCTTCEEEEEECSSHHHH---CSC-------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -CCCCCEEEEEEcchhhhc---ccc-------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 345789999986421100 011 235788889999999999997764
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-09 Score=88.10 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=66.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++..+ .+|+++|+++.. .+.++++..+|+...
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~--------------~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--- 152 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK--------------TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG--- 152 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC--------------SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC---
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC--------------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC---
Confidence 5788999999999999999998763 689999999732 235688889997321
Q ss_pred HHHHHhcC-CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 109 EVVIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 109 ~~i~~~~~-~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
+. ...||+|+++..... .. ..+.+.|+|||.+++.+..
T Consensus 153 ------~~~~~~fD~Ii~~~~~~~-----~~------------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 153 ------FPPKAPYDVIIVTAGAPK-----IP------------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp ------CGGGCCEEEEEECSBBSS-----CC------------HHHHHTEEEEEEEEEEECS
T ss_pred ------CCCCCCccEEEECCcHHH-----HH------------HHHHHhcCCCcEEEEEEec
Confidence 11 235999999865432 11 2457899999999996643
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=83.13 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=76.2
Q ss_pred HhhhhhcCc-ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceE
Q 025715 30 LQIDEEFNI-FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQ 97 (249)
Q Consensus 30 ~ei~~~~~~-~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~ 97 (249)
.++.+.+.+ +.++.+|||+|||+|.++..++++.+ ..+++++|++.+. .+ .++++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 219 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNP-------------NAEIFGVDWASVLEVAKENARIQGVASRYHT 219 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCT-------------TCEEEEEECHHHHHHHHHHHHHHTCGGGEEE
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCC-------------CCeEEEEecHHHHHHHHHHHHhcCCCcceEE
Confidence 344555553 25778999999999999999998864 4799999998321 12 25889
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+|+.+.+ ++ ..||+|++...+.. .+.. ....++..+.++|+|||.+++..+
T Consensus 220 ~~~d~~~~~--------~~-~~~D~v~~~~~l~~-----~~~~----~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 220 IAGSAFEVD--------YG-NDYDLVLLPNFLHH-----FDVA----TCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp EESCTTTSC--------CC-SCEEEEEEESCGGG-----SCHH----HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EecccccCC--------CC-CCCcEEEEcchhcc-----CCHH----HHHHHHHHHHHhCCCCcEEEEEee
Confidence 999998743 23 35999998654322 1211 124578888999999999988655
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.7e-09 Score=87.99 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=69.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++.++ +.++|+++|+++.. .+ .+++++.+|+.+.
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-- 136 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLP------------PDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT-- 136 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSC------------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--
Confidence 4678999999999999999998764 35799999999832 12 3578888887542
Q ss_pred HHHHHHhcCC--CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~--~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+. ..+ ++||+|++|.... + ....+..+.++|+|||.+++.
T Consensus 137 l~~l~--~~~~~~~fD~V~~d~~~~-------~-------~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 137 LEQLT--QGKPLPEFDLIFIDADKR-------N-------YPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp HHHHH--TSSSCCCEEEEEECSCGG-------G-------HHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHH--hcCCCCCcCEEEECCCHH-------H-------HHHHHHHHHHHcCCCeEEEEe
Confidence 11111 112 6899999986411 1 124677889999999999985
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=90.93 Aligned_cols=121 Identities=13% Similarity=0.007 Sum_probs=79.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|+++..++++++... +....++|+|+++.. .+ ++.+.++|.....
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~--------~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~-- 197 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKG--------DVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL-- 197 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTS--------SCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC--
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhc--------CCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc--
Confidence 3578999999999999999988875100 012689999999842 12 4678899986632
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHH----------HHHHHHHHHHHHHHhccCCCEEEEEEe----cCCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV----------QSQLILAGLTVVTHVLKEGGKFIAKIF----RGKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~----------~~~l~~~~l~~a~~~Lk~gG~lv~k~~----~~~~~~ 174 (249)
...+||+|++|+++.... .+... ........+..+.+.|+|||.+++.+. .+....
T Consensus 198 -------~~~~fD~Ii~NPPfg~~~---~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~ 267 (344)
T 2f8l_A 198 -------LVDPVDVVISDLPVGYYP---DDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFA 267 (344)
T ss_dssp -------CCCCEEEEEEECCCSEES---CHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHH
T ss_pred -------ccCCccEEEECCCCCCcC---chhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHH
Confidence 246899999998753211 00000 000123467888999999999998662 444555
Q ss_pred HHHHHHh
Q 025715 175 LLYCQLK 181 (249)
Q Consensus 175 ~l~~~l~ 181 (249)
.+...+.
T Consensus 268 ~ir~~l~ 274 (344)
T 2f8l_A 268 KVDKFIK 274 (344)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.1e-08 Score=82.34 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=78.6
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCCh
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNA 105 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~ 105 (249)
++++|.+|+|+|||+|.++.++++.. +..+|+|+|+++.. .+. ++++..+|..+.
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~~~-------------~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~ 78 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVERG-------------QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA 78 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTT-------------SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh
Confidence 45788999999999999999998864 24699999999842 233 588899998652
Q ss_pred hhHHHHHHhcCCC-cccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-
Q 025715 106 RTAEVVIRHFDGC-KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF- 183 (249)
Q Consensus 106 ~~~~~i~~~~~~~-~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~- 183 (249)
+..+ +||+|+..+. | -.++..++..+...|+++|+||+.-. .....+...+...
T Consensus 79 ---------l~~~~~~D~IviaG~----G---------g~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~~G 134 (225)
T 3kr9_A 79 ---------FEETDQVSVITIAGM----G---------GRLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQDHG 134 (225)
T ss_dssp ---------CCGGGCCCEEEEEEE----C---------HHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHHTT
T ss_pred ---------cccCcCCCEEEEcCC----C---------hHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHHCC
Confidence 2333 6998875321 1 12345678888999999999998544 3455555545433
Q ss_pred CCe
Q 025715 184 FPV 186 (249)
Q Consensus 184 f~~ 186 (249)
|.-
T Consensus 135 f~i 137 (225)
T 3kr9_A 135 FQI 137 (225)
T ss_dssp EEE
T ss_pred CEE
Confidence 543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=84.11 Aligned_cols=105 Identities=23% Similarity=0.295 Sum_probs=75.3
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC----CCCCCceEeecCCCChh
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNAR 106 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~----~~~~~v~~~~gDi~~~~ 106 (249)
++.+.+.-+.++.+|||+|||+|.++..++++.+ ..+++++|+..+ ...++++++.+|+.++
T Consensus 193 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~- 258 (368)
T 3reo_A 193 KILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYP-------------SINAINFDLPHVIQDAPAFSGVEHLGGDMFDG- 258 (368)
T ss_dssp HHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCCTTEEEEECCTTTC-
T ss_pred HHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCC-------------CCEEEEEehHHHHHhhhhcCCCEEEecCCCCC-
Confidence 4445554346678999999999999999998874 578999999322 1246899999999862
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++. . |+|++..... ++... -...+++.+.+.|+|||++++..+
T Consensus 259 --------~p~-~-D~v~~~~vlh-----~~~~~----~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 259 --------VPK-G-DAIFIKWICH-----DWSDE----HCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp --------CCC-C-SEEEEESCGG-----GBCHH----HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred --------CCC-C-CEEEEechhh-----cCCHH----HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 233 3 9998865432 12221 124578889999999999998654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-08 Score=86.27 Aligned_cols=109 Identities=19% Similarity=0.284 Sum_probs=77.5
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceEee
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQ 99 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~~~ 99 (249)
++.+.+.+...+.+|||+|||+|.++..++++.+ ..+++++|+..+. .+ .+++++.
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 235 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHP-------------QLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFE 235 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCT-------------TCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEE
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCC-------------CCeEEEEECHHHHHHHHHHHHhcCCCCceEEEe
Confidence 4555555434378999999999999999998864 5799999993321 12 3589999
Q ss_pred cCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 100 gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+|+.+.+. +..+.||+|++...... .+.. -+..++..+.+.|+|||.+++...
T Consensus 236 ~d~~~~~~-------~~~~~~D~v~~~~vlh~-----~~~~----~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 236 KNLLDARN-------FEGGAADVVMLNDCLHY-----FDAR----EAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp CCTTCGGG-------GTTCCEEEEEEESCGGG-----SCHH----HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcccCcc-------cCCCCccEEEEeccccc-----CCHH----HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99987541 12356999998654321 2221 134678889999999999998654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-08 Score=80.85 Aligned_cols=107 Identities=13% Similarity=0.029 Sum_probs=67.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C--C--CceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I--E--GVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~--~--~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..+++. + ..+|+|+|+++... . . +++++++|+.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~---- 109 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-G-------------AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---- 109 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC----
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc----
Confidence 46789999999999999998875 2 25899999997320 1 1 688899998763
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
+ .+||+|++|++...... ... ...+..+.++| ||.+++.+........+...+..
T Consensus 110 ------~-~~~D~v~~~~p~~~~~~-~~~--------~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~ 164 (207)
T 1wy7_A 110 ------N-SRVDIVIMNPPFGSQRK-HAD--------RPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWE 164 (207)
T ss_dssp ------C-CCCSEEEECCCCSSSST-TTT--------HHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHH
T ss_pred ------C-CCCCEEEEcCCCccccC-Cch--------HHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHH
Confidence 2 48999999986543221 111 23456666777 55443321122223334444443
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.2e-08 Score=85.92 Aligned_cols=104 Identities=16% Similarity=0.089 Sum_probs=74.9
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------C-CCCceEeecC
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-IEGVIQVQGD 101 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~-~~~v~~~~gD 101 (249)
++.+.+. +.++.+|||+|||+|.++..++++.+ ..+++++|+.++. . .++++++.+|
T Consensus 175 ~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d 240 (348)
T 3lst_A 175 ILARAGD-FPATGTVADVGGGRGGFLLTVLREHP-------------GLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGD 240 (348)
T ss_dssp HHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCT-------------TEEEEEEECHHHHTTCCCCCGGGTTSEEEEECC
T ss_pred HHHHhCC-ccCCceEEEECCccCHHHHHHHHHCC-------------CCEEEEecCHHHhhcccccccCCCCCeEEEecC
Confidence 4445554 35678999999999999999998864 5689999985421 1 1368899999
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+. ++ +||+|++...... .+.. .+..++..+.++|||||.|++...
T Consensus 241 ~~~~---------~p--~~D~v~~~~vlh~-----~~d~----~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 241 FLRE---------VP--HADVHVLKRILHN-----WGDE----DSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp TTTC---------CC--CCSEEEEESCGGG-----SCHH----HHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCC---------CC--CCcEEEEehhccC-----CCHH----HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9742 23 8999998654321 2221 123578899999999999998654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.73 E-value=4.8e-09 Score=90.46 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C-------------------CC-
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I-------------------EG- 94 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~-------------------~~- 94 (249)
++.+|||+|||+|.++..++.. + ...|+|+|+++... + .+
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~-~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS-H-------------FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 136 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG-G-------------CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred CCCeEEEECCCcChHHHHhhcc-C-------------CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCc
Confidence 6789999999999954333332 2 36999999997321 0 01
Q ss_pred ---------------ceEeecCCCC-hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc
Q 025715 95 ---------------VIQVQGDITN-ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 95 ---------------v~~~~gDi~~-~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (249)
++++.+|+.+ .+.. ...+..++||+|++........ .+ ..-...++..+.++||
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~~~~~~fD~V~~~~~l~~~~---~~----~~~~~~~l~~~~r~Lk 206 (289)
T 2g72_A 137 GECWQDKERQLRARVKRVLPIDVHQPQPLG---AGSPAPLPADALVSAFCLEAVS---PD----LASFQRALDHITTLLR 206 (289)
T ss_dssp CCCHHHHHHHHHHHEEEEECCCTTSSSTTC---SSCSSCSSEEEEEEESCHHHHC---SS----HHHHHHHHHHHHTTEE
T ss_pred ccchhhhHHHHHhhhceEEecccCCCCCcc---ccccCCCCCCEEEehhhhhhhc---CC----HHHHHHHHHHHHHhcC
Confidence 2234457765 2100 0012346799999976432110 00 1113467889999999
Q ss_pred CCCEEEEEEec---------------CCCHHHHHHHHhcC-CCeeEE
Q 025715 159 EGGKFIAKIFR---------------GKDTSLLYCQLKLF-FPVVTF 189 (249)
Q Consensus 159 ~gG~lv~k~~~---------------~~~~~~l~~~l~~~-f~~v~~ 189 (249)
|||.|++.... ..+..++..+++.. |+.+.+
T Consensus 207 pGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 207 PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp EEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 99999985311 12455666666654 665544
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-07 Score=83.06 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=75.5
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC----CCCCCceEeecCCCChh
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNAR 106 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~----~~~~~v~~~~gDi~~~~ 106 (249)
.+.+.+.-+.++.+|||+|||+|.++..++++.+ ..+++++|+..+ ...++++++.+|+.++
T Consensus 191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~- 256 (364)
T 3p9c_A 191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYP-------------TIKGVNFDLPHVISEAPQFPGVTHVGGDMFKE- 256 (364)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCCTTEEEEECCTTTC-
T ss_pred HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCC-------------CCeEEEecCHHHHHhhhhcCCeEEEeCCcCCC-
Confidence 4455554346778999999999999999998874 578999999332 1246899999999862
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++. . |+|++..... ++... -+..+++.+.+.|+|||++++..+
T Consensus 257 --------~p~-~-D~v~~~~vlh-----~~~d~----~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 257 --------VPS-G-DTILMKWILH-----DWSDQ----HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp --------CCC-C-SEEEEESCGG-----GSCHH----HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred --------CCC-C-CEEEehHHhc-----cCCHH----HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 233 3 9998865332 12211 124578899999999999998654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-08 Score=83.29 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=78.5
Q ss_pred CcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCC
Q 025715 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITN 104 (249)
Q Consensus 37 ~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~ 104 (249)
.++++|.+|+|+|||+|.++.++++.. +..+|+|+|+++.. .+ .++++..+|..+
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~-------------~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~ 83 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQMG-------------YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS 83 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTT-------------CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred HhCCCCCEEEEECCchHHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 345789999999999999999998764 24689999999842 13 358899999876
Q ss_pred hhhHHHHHHhcCC-CcccEEEe-CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 105 ARTAEVVIRHFDG-CKADLVVC-DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 105 ~~~~~~i~~~~~~-~~~DlVls-D~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
.. .+ ..||+|+. .+. ..++..++..+...|+++|+|++.-.. ....+...+..
T Consensus 84 ~~---------~~~~~~D~IviaGmG--------------g~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~L~~ 138 (230)
T 3lec_A 84 AF---------EEADNIDTITICGMG--------------GRLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKWLAA 138 (230)
T ss_dssp GC---------CGGGCCCEEEEEEEC--------------HHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHH
T ss_pred cc---------ccccccCEEEEeCCc--------------hHHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHHHHH
Confidence 42 22 36999764 321 133456778888999999999986543 35555544443
Q ss_pred -CCCe
Q 025715 183 -FFPV 186 (249)
Q Consensus 183 -~f~~ 186 (249)
-|.-
T Consensus 139 ~Gf~i 143 (230)
T 3lec_A 139 NDFEI 143 (230)
T ss_dssp TTEEE
T ss_pred CCCEE
Confidence 3543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-07 Score=82.91 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=75.2
Q ss_pred HhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceE
Q 025715 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQ 97 (249)
Q Consensus 30 ~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~ 97 (249)
.++.+.+. +.++.+|||+|||+|.++..++++.+ ..+++++|+ +.. .++ ++++
T Consensus 180 ~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~ 244 (359)
T 1x19_A 180 QLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFP-------------ELDSTILNL-PGAIDLVNENAAEKGVADRMRG 244 (359)
T ss_dssp HHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCT-------------TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCC-------------CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEE
Confidence 34445554 35678999999999999999998864 579999999 632 133 4899
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+|+.+.+ ++ ..|+|++...... .+. +....++..+.++|+|||.+++..+
T Consensus 245 ~~~d~~~~~--------~~--~~D~v~~~~vlh~-----~~d----~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 245 IAVDIYKES--------YP--EADAVLFCRILYS-----ANE----QLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp EECCTTTSC--------CC--CCSEEEEESCGGG-----SCH----HHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred EeCccccCC--------CC--CCCEEEEechhcc-----CCH----HHHHHHHHHHHHhcCCCCEEEEEec
Confidence 999998743 22 3499998654321 221 1134678889999999999987654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-07 Score=81.37 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=74.2
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEe
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQV 98 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~ 98 (249)
.+.+.+.+ .+ .+|||+|||+|.++..++++.+ ..+++++|+ +... -++++++
T Consensus 159 ~~~~~~~~-~~-~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~ 222 (334)
T 2ip2_A 159 EIPRLLDF-RG-RSFVDVGGGSGELTKAILQAEP-------------SARGVMLDR-EGSLGVARDNLSSLLAGERVSLV 222 (334)
T ss_dssp HHHHHSCC-TT-CEEEEETCTTCHHHHHHHHHCT-------------TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEE
T ss_pred HHHHhCCC-CC-CEEEEeCCCchHHHHHHHHHCC-------------CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEe
Confidence 34444443 44 8999999999999999998864 479999999 6321 1468999
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+|+.+. ++ .+||+|++..... +++.. ....++..+.+.|+|||.+++...
T Consensus 223 ~~d~~~~---------~~-~~~D~v~~~~vl~-----~~~~~----~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 223 GGDMLQE---------VP-SNGDIYLLSRIIG-----DLDEA----ASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp ESCTTTC---------CC-SSCSEEEEESCGG-----GCCHH----HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCCCCC---------CC-CCCCEEEEchhcc-----CCCHH----HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999763 23 5799999865432 12221 124578889999999999998654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=84.33 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=71.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..+++..+ ..+++++|+ +.. .+ .+++++.+|+.+.
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 244 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAP-------------HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-- 244 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC-------------CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc--
Confidence 5678999999999999999998863 479999999 621 12 3789999998762
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++ ..||+|++...... .+.. ....++..+.++|+|||.+++..+
T Consensus 245 -------~~-~~~D~v~~~~vl~~-----~~~~----~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 245 -------LP-VTADVVLLSFVLLN-----WSDE----DALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp -------CS-CCEEEEEEESCGGG-----SCHH----HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -------CC-CCCCEEEEeccccC-----CCHH----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 23 34999998764321 2221 123578888999999999998655
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-08 Score=91.03 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=71.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..++.... .+.|+|+|+++.. .+ .++++.++|+.+.+
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~-------------~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~- 281 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRY-------------SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS- 281 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTC-------------CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-
Confidence 5789999999999999999987642 3599999999842 12 46789999998754
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+..++||+|++|++... +.........++...+..+.++| ||.+++.+.
T Consensus 282 -------~~~~~fD~Ii~npPyg~---r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 282 -------QYVDSVDFAISNLPYGL---KIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp -------GTCSCEEEEEEECCCC---------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred -------cccCCcCEEEECCCCCc---ccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 23478999999986432 11111112345566778888888 666665443
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.9e-08 Score=89.37 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=67.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------------C--CCCceEee
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------P--IEGVIQVQ 99 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------~--~~~v~~~~ 99 (249)
.++.+|||||||+|.++..+++..+ ..+|+|||+++.. . +.++++++
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g-------------~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECG-------------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC-------------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 6789999999999999999998765 3589999998731 1 35678888
Q ss_pred cCCCC-hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 100 GDITN-ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 100 gDi~~-~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+|... ..... . ...+||+|+++.... ..+ ...++..+.+.|||||.+++.
T Consensus 308 gD~~~~~~~~~---~--~~~~FDvIvvn~~l~-----~~d-------~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 308 KKSFVDNNRVA---E--LIPQCDVILVNNFLF-----DED-------LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp SSCSTTCHHHH---H--HGGGCSEEEECCTTC-----CHH-------HHHHHHHHHTTCCTTCEEEES
T ss_pred cCccccccccc---c--ccCCCCEEEEeCccc-----ccc-------HHHHHHHHHHhCCCCeEEEEe
Confidence 76442 11110 0 125799999874321 011 124567888999999999984
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-07 Score=79.57 Aligned_cols=112 Identities=19% Similarity=-0.012 Sum_probs=69.3
Q ss_pred hhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecC-CCCC-------------C
Q 025715 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDL-QPMA-------------P 91 (249)
Q Consensus 26 ~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi-~~~~-------------~ 91 (249)
...|.+......-..++.+|||||||+|.++..+++. + ..+|+++|+ ++.. .
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-------------~~~v~~~D~s~~~~~~~a~~n~~~N~~~ 129 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-------------ADQVVATDYPDPEILNSLESNIREHTAN 129 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-------------CSEEEEEECSCHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-------------CCEEEEEeCCCHHHHHHHHHHHHHhhhh
Confidence 4445444333322357789999999999999888764 3 258999999 6521 0
Q ss_pred ---C-----CCceEeecCCCChhhHHHHHHhcCCCcccEEEe-CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc---C
Q 025715 92 ---I-----EGVIQVQGDITNARTAEVVIRHFDGCKADLVVC-DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK---E 159 (249)
Q Consensus 92 ---~-----~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVls-D~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk---~ 159 (249)
+ .++++...|..+.. ..+...+..++||+|++ |.... ... ...++..+.++|+ |
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~fD~Ii~~dvl~~------~~~------~~~ll~~l~~~Lk~~~p 195 (281)
T 3bzb_A 130 SCSSETVKRASPKVVPYRWGDSP--DSLQRCTGLQRFQVVLLADLLSF------HQA------HDALLRSVKMLLALPAN 195 (281)
T ss_dssp ---------CCCEEEECCTTSCT--HHHHHHHSCSSBSEEEEESCCSC------GGG------HHHHHHHHHHHBCCTTT
T ss_pred hcccccCCCCCeEEEEecCCCcc--HHHHhhccCCCCCEEEEeCcccC------hHH------HHHHHHHHHHHhcccCC
Confidence 1 24666655554421 11222223578999987 44221 111 2346777889999 9
Q ss_pred --CCEEEE
Q 025715 160 --GGKFIA 165 (249)
Q Consensus 160 --gG~lv~ 165 (249)
||.+++
T Consensus 196 ~~gG~l~v 203 (281)
T 3bzb_A 196 DPTAVALV 203 (281)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEEE
Confidence 998876
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-07 Score=81.69 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=74.5
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEe
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQV 98 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~ 98 (249)
++.+.+. +.++.+|||+|||+|.++..+++..+ ..+++++|+ +.. .+ +++++.
T Consensus 160 ~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~ 224 (332)
T 3i53_A 160 GIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHE-------------DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVV 224 (332)
T ss_dssp TGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCC-------------CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEe
Confidence 3334443 24568999999999999999998864 578999999 521 12 568999
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+|+.++ ++. +||+|++..... +++.. .+..++..+.+.|+|||.+++...
T Consensus 225 ~~d~~~~---------~p~-~~D~v~~~~vlh-----~~~~~----~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 225 VGSFFDP---------LPA-GAGGYVLSAVLH-----DWDDL----SAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp ECCTTSC---------CCC-SCSEEEEESCGG-----GSCHH----HHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCCCC---------CCC-CCcEEEEehhhc-----cCCHH----HHHHHHHHHHHhcCCCCEEEEEee
Confidence 9999742 233 799999865432 12221 124578889999999999998654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-08 Score=84.31 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=78.0
Q ss_pred CcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCC
Q 025715 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITN 104 (249)
Q Consensus 37 ~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~ 104 (249)
.++++|.+|||+|||+|.++.++++.. +..+|+|+|+++.. .+. ++++..+|..+
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~-------------~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~ 83 (244)
T 3gnl_A 17 SYITKNERIADIGSDHAYLPCFAVKNQ-------------TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA 83 (244)
T ss_dssp TTCCSSEEEEEETCSTTHHHHHHHHTT-------------SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred HhCCCCCEEEEECCccHHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhh
Confidence 345789999999999999999998764 24689999999842 233 48889999876
Q ss_pred hhhHHHHHHhcCCC-cccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc-
Q 025715 105 ARTAEVVIRHFDGC-KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL- 182 (249)
Q Consensus 105 ~~~~~~i~~~~~~~-~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~- 182 (249)
. +.++ +||+|+.-+. | ..++..++..+...|+++|+||+.-.. ....+...|..
T Consensus 84 ~---------~~~~~~~D~Iviagm----G---------g~lI~~IL~~~~~~L~~~~~lIlq~~~--~~~~lr~~L~~~ 139 (244)
T 3gnl_A 84 V---------IEKKDAIDTIVIAGM----G---------GTLIRTILEEGAAKLAGVTKLILQPNI--AAWQLREWSEQN 139 (244)
T ss_dssp G---------CCGGGCCCEEEEEEE----C---------HHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHH
T ss_pred c---------cCccccccEEEEeCC----c---------hHHHHHHHHHHHHHhCCCCEEEEEcCC--ChHHHHHHHHHC
Confidence 3 2223 5999875221 1 134456788889999999999986533 34455544443
Q ss_pred CCC
Q 025715 183 FFP 185 (249)
Q Consensus 183 ~f~ 185 (249)
-|.
T Consensus 140 Gf~ 142 (244)
T 3gnl_A 140 NWL 142 (244)
T ss_dssp TEE
T ss_pred CCE
Confidence 254
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-08 Score=80.62 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
++.+|||+|||+|.++..++ . . +++|+++... -.+++++++|+.+.+ +.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~---~--------------~--~~vD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~ 99 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLK---I--------------K--IGVEPSERMAEIARKRGVFVLKGTAENLP--------LK 99 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHT---C--------------C--EEEESCHHHHHHHHHTTCEEEECBTTBCC--------SC
T ss_pred CCCcEEEeCCCCCHHHHHHH---H--------------H--hccCCCHHHHHHHHhcCCEEEEcccccCC--------CC
Confidence 48899999999999887653 1 2 9999987421 126888899987643 34
Q ss_pred CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.++||+|++....... .+. ..++..+.++|+|||.+++....
T Consensus 100 ~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 100 DESFDFALMVTTICFV----DDP-------ERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp TTCEEEEEEESCGGGS----SCH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEEcchHhhc----cCH-------HHHHHHHHHHcCCCcEEEEEEeC
Confidence 5689999998654322 121 25678889999999999997654
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.8e-08 Score=95.83 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=72.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------------CCCCceEeecCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------------PIEGVIQVQGDI 102 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------------~~~~v~~~~gDi 102 (249)
.++.+|||+|||+|.++..++++.+ +..+|+|+|+++.. .+++++++++|+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~------------p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa 787 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPT------------SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI 787 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCC------------CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCC------------CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence 3778999999999999999987653 24699999999731 134689999999
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+.+ +..++||+|++...... .... .....+..+.++|||| .+++.+.
T Consensus 788 ~dLp--------~~d~sFDlVV~~eVLeH-----L~dp----~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 788 LEFD--------SRLHDVDIGTCLEVIEH-----MEED----QACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp TSCC--------TTSCSCCEEEEESCGGG-----SCHH----HHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred HhCC--------cccCCeeEEEEeCchhh-----CChH----HHHHHHHHHHHHcCCC-EEEEEec
Confidence 8854 24578999999765432 1221 1234678889999999 7776553
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-08 Score=91.10 Aligned_cols=94 Identities=19% Similarity=0.102 Sum_probs=68.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCC--ceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~--v~~~~gDi~~~~ 106 (249)
++|.+|||+|||+|+++..++.+.+ ...+|+++|+++.+ .+.+ ++++++|+.+.
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~------------ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~- 117 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETS------------CVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF- 117 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCS------------CEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-
T ss_pred CCCCEEEECCCcccHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH-
Confidence 4688999999999999999998753 12589999999843 2333 78888887542
Q ss_pred hHHHHHH-hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 107 TAEVVIR-HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 107 ~~~~i~~-~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.. .+ .++||+|+.|+ + |. . ...+..+.++|++||.+++..
T Consensus 118 -----l~~~~-~~~fD~V~lDP-~---g~---~--------~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 118 -----LRKEW-GFGFDYVDLDP-F---GT---P--------VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp -----HHSCC-SSCEEEEEECC-S---SC---C--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred -----HHHhh-CCCCcEEEECC-C---cC---H--------HHHHHHHHHHhCCCCEEEEEe
Confidence 22 22 35799999997 2 11 1 135677888999999887754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-07 Score=82.22 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=70.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..++++.+ ..+++++|+ +.. .+ .+++++.+|+.+.
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 245 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAP-------------HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-- 245 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCC-------------CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC--
Confidence 5678999999999999999998764 578999998 531 12 2689999999762
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
++ ..||+|++...... .... ....++..+.++|+|||.+++..+.
T Consensus 246 -------~~-~~~D~v~~~~vl~~-----~~~~----~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 246 -------LP-RKADAIILSFVLLN-----WPDH----DAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp -------CS-SCEEEEEEESCGGG-----SCHH----HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -------CC-CCccEEEEcccccC-----CCHH----HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 23 35999998754321 2211 1235778889999999999986543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-08 Score=89.31 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------------------------CCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------------------PIEG 94 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------------------------~~~~ 94 (249)
++.+|||+|||+|.++..++.+.+ ..+|+++|+++.+ .+.+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-------------~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~ 113 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-------------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT 113 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-------------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc
Confidence 678999999999999999998864 3689999999842 1223
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
++++++|+.+.. ... .++||+|+.|+... . ...+..+.+.|++||.+++.
T Consensus 114 i~v~~~Da~~~~------~~~-~~~fD~I~lDP~~~-------~--------~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 114 IVINHDDANRLM------AER-HRYFHFIDLDPFGS-------P--------MEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp EEEEESCHHHHH------HHS-TTCEEEEEECCSSC-------C--------HHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEcCcHHHHH------Hhc-cCCCCEEEeCCCCC-------H--------HHHHHHHHHhcCCCCEEEEE
Confidence 677888875431 122 35799999997311 0 13567788999999987764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-08 Score=85.73 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=67.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++. .+|+|+|+++... .++++++++|+.+.+
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~---------------~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~---- 88 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKIS---------------KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ---- 88 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS---------------SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT----
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC---------------CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcC----
Confidence 578899999999999999998863 6899999998431 136788999998753
Q ss_pred HHHhcC-CCcccEEEeCCCCCCCCCCCcCHHHHHHHHH------HHH----HHHHHhccCCCEEEE
Q 025715 111 VIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLIL------AGL----TVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~-~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~------~~l----~~a~~~Lk~gG~lv~ 165 (249)
+. +++| .|++|++.... ......+.. ..+ +.+.++|+|||.|++
T Consensus 89 ----~~~~~~f-~vv~n~Py~~~------~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 89 ----FPNKQRY-KIVGNIPYHLS------TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp ----CCCSSEE-EEEEECCSSSC------HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred ----cccCCCc-EEEEeCCcccc------HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 23 2578 88998764432 111111111 122 668899999998776
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=84.08 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=71.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.+..+|||+|||+|.++..++++.+ ..+++++|+ +.. .+ ++++++.+|+.+.+.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNK-------------EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDV 243 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHST-------------TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC-------------CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCC
Confidence 4567999999999999999998864 579999998 521 11 368999999987420
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.++ ++||+|++..... +++.. -...++..+.+.|+|||++++...
T Consensus 244 ------~~p-~~~D~v~~~~vlh-----~~~~~----~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 244 ------PFP-TGFDAVWMSQFLD-----CFSEE----EVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp ------CCC-CCCSEEEEESCST-----TSCHH----HHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ------CCC-CCcCEEEEechhh-----hCCHH----HHHHHHHHHHHhcCCCcEEEEEee
Confidence 023 6899999865432 12221 123578889999999999988554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.6e-08 Score=79.03 Aligned_cols=104 Identities=16% Similarity=0.038 Sum_probs=66.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++. + ..+|+|+|+++.. ...+++++++|+.+.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~-------- 107 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-G-------------AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI-------- 107 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-T-------------BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC--------
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-C-------------CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHC--------
Confidence 46789999999999999998875 3 2589999999742 123788999998763
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~ 181 (249)
+ ++||+|++|+++..... . .....+..+.+.| |+ +++ ++.+.....+...+.
T Consensus 108 --~-~~~D~v~~~~p~~~~~~----~-----~~~~~l~~~~~~~--g~-~~~-~~~~~~~~~~~~~~~ 159 (200)
T 1ne2_A 108 --S-GKYDTWIMNPPFGSVVK----H-----SDRAFIDKAFETS--MW-IYS-IGNAKARDFLRREFS 159 (200)
T ss_dssp --C-CCEEEEEECCCC----------------CHHHHHHHHHHE--EE-EEE-EEEGGGHHHHHHHHH
T ss_pred --C-CCeeEEEECCCchhccC----c-----hhHHHHHHHHHhc--Cc-EEE-EEcCchHHHHHHHHH
Confidence 2 58999999986543211 0 0123566677777 44 333 333334444444443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-08 Score=92.15 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=67.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++. + ..+|+|+|++++. .+ ++++++++|+.+.+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~-~-------------~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-- 220 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQA-G-------------ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-- 220 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHT-T-------------CSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCC--
T ss_pred cCCCEEEEecCcccHHHHHHHHc-C-------------CCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCc--
Confidence 46789999999999999988863 3 3699999999831 12 46899999998742
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
++ ++||+|+|++..... ..+ .....+..+.++|||||.+++.
T Consensus 221 ------~~-~~fD~Ivs~~~~~~~----~~e-----~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 221 ------LP-EQVDIIISEPMGYML----FNE-----RMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp ------CS-SCEEEEECCCCHHHH----TCH-----HHHHHHHHGGGGEEEEEEEESC
T ss_pred ------cC-CCeEEEEEeCchHhc----CcH-----HHHHHHHHHHHhcCCCCEEEEE
Confidence 22 589999997632110 011 1123455778999999999853
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.4e-07 Score=80.06 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=75.7
Q ss_pred HhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceE
Q 025715 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQ 97 (249)
Q Consensus 30 ~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~ 97 (249)
..+.+.++ +.++.+|||+|||+|.++..++++.+ ..+++++|+ +.. . .+++++
T Consensus 192 ~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~ 256 (369)
T 3gwz_A 192 GQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFP-------------GLRGTLLER-PPVAEEARELLTGRGLADRCEI 256 (369)
T ss_dssp HHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCC-------------CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEE
Confidence 34445554 35678999999999999999998864 579999999 521 1 246899
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..+|+.++ ++. +||+|++...... .+... +..++..+.+.|+|||.+++...
T Consensus 257 ~~~d~~~~---------~p~-~~D~v~~~~vlh~-----~~d~~----~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 257 LPGDFFET---------IPD-GADVYLIKHVLHD-----WDDDD----VVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp EECCTTTC---------CCS-SCSEEEEESCGGG-----SCHHH----HHHHHHHHHTTCCTTCEEEEEEE
T ss_pred eccCCCCC---------CCC-CceEEEhhhhhcc-----CCHHH----HHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999842 233 7999998654321 22211 23578889999999999998654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=82.75 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=71.7
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC-----CCCCCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----APIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~-----~~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+.++.+|||+|||+|.++..++++.+ ..+++++|+ +. ...++++++.+|+.+.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------- 243 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFP-------------KLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTS-------- 243 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTC--------
T ss_pred cccCceEEEeCCCccHHHHHHHHHCC-------------CCeEEEeeC-HHHHhhcccCCCcEEEeccccCC--------
Confidence 45678999999999999999998864 478999999 52 1246799999999762
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccC---CCEEEEEEe
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKE---GGKFIAKIF 168 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~---gG~lv~k~~ 168 (249)
++ .||+|++...... .... -+..++..+.++||| ||++++..+
T Consensus 244 -~p--~~D~v~~~~~lh~-----~~d~----~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 244 -IP--NADAVLLKYILHN-----WTDK----DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp -CC--CCSEEEEESCGGG-----SCHH----HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred -CC--CccEEEeehhhcc-----CCHH----HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 23 3999998654321 2221 123578889999999 999988654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-07 Score=79.01 Aligned_cols=107 Identities=10% Similarity=0.082 Sum_probs=69.1
Q ss_pred CCeEEEEcCCC--ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C--CCCceEeecCCCChhhH
Q 025715 42 VKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTA 108 (249)
Q Consensus 42 g~~vLDLG~gp--G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~--~~~v~~~~gDi~~~~~~ 108 (249)
..+|||||||+ ++.+..++++.. +..+|++||.++.. . ..+++++++|+.+++..
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~------------P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVA------------PESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI 146 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHC------------TTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHC------------CCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence 36899999997 445555555554 46899999999832 1 12488999999986421
Q ss_pred HHHHHh-cCCCccc-----EEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 109 EVVIRH-FDGCKAD-----LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 109 ~~i~~~-~~~~~~D-----lVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
... .....|| .|+++....+... .+. ...++....+.|+|||.|++..+...
T Consensus 147 ---l~~~~~~~~~D~~~p~av~~~avLH~l~d--~~~------p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 147 ---LDAPELRDTLDLTRPVALTVIAIVHFVLD--EDD------AVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp ---HTCHHHHTTCCTTSCCEEEEESCGGGSCG--GGC------HHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred ---hcccccccccCcCCcchHHhhhhHhcCCc--hhh------HHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 100 0012344 5788776554321 110 12467788999999999999877543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.7e-08 Score=83.88 Aligned_cols=99 Identities=19% Similarity=0.168 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC------------------
Q 025715 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI------------------ 92 (249)
Q Consensus 41 ~g~~vLDLG~gpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~------------------ 92 (249)
++.+|+|+|||+|. ++..+++.++... .+.+|+|+|+++.. ..
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~---------~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f 175 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAP---------GRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYF 175 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCT---------TSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHE
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCC---------CCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHh
Confidence 45799999999998 4555666654110 12589999998731 00
Q ss_pred ------------------CCceEeecCCCChhhHHHHHHhcC-CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Q 025715 93 ------------------EGVIQVQGDITNARTAEVVIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV 153 (249)
Q Consensus 93 ------------------~~v~~~~gDi~~~~~~~~i~~~~~-~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a 153 (249)
.+|.|.++|+.+.+ ++ .++||+|+|-....+ .+.. ....++...
T Consensus 176 ~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~--------~~~~~~fDlI~crnvliy-----f~~~----~~~~vl~~~ 238 (274)
T 1af7_A 176 MRGTGPHEGLVRVRQELANYVEFSSVNLLEKQ--------YNVPGPFDAIFCRNVMIY-----FDKT----TQEDILRRF 238 (274)
T ss_dssp EECCTTSCSEEEECHHHHTTEEEEECCTTCSS--------CCCCCCEEEEEECSSGGG-----SCHH----HHHHHHHHH
T ss_pred hccccCCCCceeechhhcccCeEEecccCCCC--------CCcCCCeeEEEECCchHh-----CCHH----HHHHHHHHH
Confidence 14778888887742 22 368999999543211 1221 235678889
Q ss_pred HHhccCCCEEEE
Q 025715 154 THVLKEGGKFIA 165 (249)
Q Consensus 154 ~~~Lk~gG~lv~ 165 (249)
.+.|+|||.|++
T Consensus 239 ~~~L~pgG~L~l 250 (274)
T 1af7_A 239 VPLLKPDGLLFA 250 (274)
T ss_dssp GGGEEEEEEEEE
T ss_pred HHHhCCCcEEEE
Confidence 999999999987
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-08 Score=87.60 Aligned_cols=100 Identities=12% Similarity=0.016 Sum_probs=66.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.++.+|||+|||+|.++..++++ + ..|+|+|+++.. .-.++......+. ......+. +
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~-g--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~l~--~ 167 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA-G--------------VRHLGFEPSSGVAAKAREKGIRVRTDFFE-KATADDVR--R 167 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT-T--------------CEEEEECCCHHHHHHHHTTTCCEECSCCS-HHHHHHHH--H
T ss_pred CCCCEEEEecCCCCHHHHHHHHc-C--------------CcEEEECCCHHHHHHHHHcCCCcceeeec-hhhHhhcc--c
Confidence 57889999999999999999875 2 599999999732 0113333322221 11111111 2
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+++||+|++........ + ....+..+.++|||||.|++.+.
T Consensus 168 ~~~~fD~I~~~~vl~h~~----d-------~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 168 TEGPANVIYAANTLCHIP----Y-------VQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp HHCCEEEEEEESCGGGCT----T-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEEECChHHhcC----C-------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 347899999987654321 2 13578889999999999998753
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.9e-08 Score=83.49 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=48.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..++++ + .+|+|+|+++.. ..++++++++|+.+.+
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~-~--------------~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~-- 103 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPL-A--------------KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV-- 103 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTT-S--------------SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC--
T ss_pred CCcCEEEEEcCcCcHHHHHHHhc-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC--
Confidence 57889999999999999998865 2 699999999732 2357888999997743
Q ss_pred HHHHHhcCCCcccEEEeCCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~ 129 (249)
..+||+|++|++.
T Consensus 104 --------~~~~D~Vv~n~py 116 (299)
T 2h1r_A 104 --------FPKFDVCTANIPY 116 (299)
T ss_dssp --------CCCCSEEEEECCG
T ss_pred --------cccCCEEEEcCCc
Confidence 2479999999754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6e-07 Score=79.78 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=75.1
Q ss_pred hhhhhcC-cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC----CCCCCceEeecCCCCh
Q 025715 31 QIDEEFN-IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNA 105 (249)
Q Consensus 31 ei~~~~~-~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~----~~~~~v~~~~gDi~~~ 105 (249)
.+.+.+. -+.++.+|||+|||+|.++..++++.+ ..+++++|+..+ ...++++++.+|+.+
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~- 247 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFP-------------HLKCTVFDQPQVVGNLTGNENLNFVGGDMFK- 247 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCT-------------TSEEEEEECHHHHSSCCCCSSEEEEECCTTT-
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCC-------------CCeEEEeccHHHHhhcccCCCcEEEeCccCC-
Confidence 4444551 245678999999999999999998864 578999998432 124678999999976
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccC---CCEEEEEEe
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKE---GGKFIAKIF 168 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~---gG~lv~k~~ 168 (249)
+ ++ .+|+|++...... .+.. .+..++..+.+.|+| ||++++..+
T Consensus 248 ~--------~~--~~D~v~~~~vlh~-----~~d~----~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 248 S--------IP--SADAVLLKWVLHD-----WNDE----QSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp C--------CC--CCSEEEEESCGGG-----SCHH----HHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred C--------CC--CceEEEEcccccC-----CCHH----HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 2 23 4999998754321 2221 123678889999999 999998644
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=86.12 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=72.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC--CceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE--GVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~--~v~~~~gDi~~~~ 106 (249)
.++.+|+|.|||+|+++..+++++.................++|+|+++.. .+. ++.+.++|....+
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 457899999999999999988876311000000000012579999999732 122 5667889987643
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcC----HHH--HHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD----EFV--QSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~----~~~--~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...+||+|++|+++......... ... ........+..+.++|+|||++++.+.
T Consensus 250 ---------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 250 ---------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp ---------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 12489999999865432211000 000 000113467788899999999988663
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-07 Score=83.89 Aligned_cols=93 Identities=13% Similarity=0.249 Sum_probs=65.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+.+|||||||+|.++..+++.. .+|+|+|+++.+ .+++++++++|+.+..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---------------~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~---- 274 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---------------DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT---- 274 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---------------SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH----
T ss_pred CCEEEEccCCCCHHHHHHHhcC---------------CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH----
Confidence 5789999999999999888632 599999999842 2457889999986531
Q ss_pred HHHhcCC--------------CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 111 VIRHFDG--------------CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 111 i~~~~~~--------------~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
..+.. .+||+|+.|++. .|. ...+.+.|+++|.+++..+.+..
T Consensus 275 --~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr--~g~---------------~~~~~~~l~~~g~ivyvsc~p~t 331 (369)
T 3bt7_A 275 --QAMNGVREFNRLQGIDLKSYQCETIFVDPPR--SGL---------------DSETEKMVQAYPRILYISCNPET 331 (369)
T ss_dssp --HHHSSCCCCTTGGGSCGGGCCEEEEEECCCT--TCC---------------CHHHHHHHTTSSEEEEEESCHHH
T ss_pred --HHHhhccccccccccccccCCCCEEEECcCc--ccc---------------HHHHHHHHhCCCEEEEEECCHHH
Confidence 11121 379999999743 222 12345667799999987665443
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-08 Score=81.00 Aligned_cols=92 Identities=9% Similarity=-0.056 Sum_probs=62.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~ 106 (249)
+.+..+|||||||+|.++..++...+ ..+|+|+|+++-. ... ++.+ .|....
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p-------------~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~- 110 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENE-------------KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD- 110 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSC-------------CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-
Confidence 46778999999999999998876543 5699999999832 122 2333 444221
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...++||+|++.-.... ++-...++....+.|+|||.||-
T Consensus 111 --------~~~~~~DvVLa~k~LHl-----------L~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 111 --------VYKGTYDVVFLLKMLPV-----------LKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp --------HTTSEEEEEEEETCHHH-----------HHHTTCCHHHHHHTCEEEEEEEE
T ss_pred --------CCCCCcChhhHhhHHHh-----------hhhhHHHHHHHHHHhCCCCEEEE
Confidence 24578999998532111 11122345578899999999885
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.1e-07 Score=82.02 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=63.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+.++.+|||+|||+|.++..+++. + .+|+|+|+++.+ .+. ++++++|+.+..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-~--------------~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~- 350 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-G--------------FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS- 350 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC-
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC-
Confidence 467889999999999999999875 2 599999999742 133 889999998742
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
. .+||+|++|++. .|. .. .++ .+.+.|+|||.+++.
T Consensus 351 --------~-~~fD~Vv~dPPr--~g~---~~--------~~~-~~l~~l~p~givyvs 386 (425)
T 2jjq_A 351 --------V-KGFDTVIVDPPR--AGL---HP--------RLV-KRLNREKPGVIVYVS 386 (425)
T ss_dssp --------C-TTCSEEEECCCT--TCS---CH--------HHH-HHHHHHCCSEEEEEE
T ss_pred --------c-cCCCEEEEcCCc--cch---HH--------HHH-HHHHhcCCCcEEEEE
Confidence 2 279999999742 232 21 112 223458999988874
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-07 Score=80.05 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=52.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.++.+|||+|||+|.++..++++. .+|+|+|+++.. .. ++++++++|+.+.+
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~---------------~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~- 90 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKA---------------KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD- 90 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHS---------------SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-
T ss_pred CCCCEEEEEcCcccHHHHHHHhhC---------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc-
Confidence 578899999999999999999863 599999999731 11 46889999998743
Q ss_pred HHHHHHhcCCCcccEEEeCCCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~ 130 (249)
-.+||+|++|.+.+
T Consensus 91 ---------~~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 91 ---------LPFFDTCVANLPYQ 104 (285)
T ss_dssp ---------CCCCSEEEEECCGG
T ss_pred ---------chhhcEEEEecCcc
Confidence 23799999997644
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.4e-07 Score=84.30 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=73.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCC-----CCCCeEEEecCCCCC-----------CCCC-----ceEe
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSRE-----GDLPLIVAIDLQPMA-----------PIEG-----VIQV 98 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~-----~~~~~vvavDi~~~~-----------~~~~-----v~~~ 98 (249)
.++.+|+|.|||+|+|...+.+++....+..+.... -....++|+|+++.. .+.+ +.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 467899999999999999988876421100000000 002479999999832 2233 5678
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCC----cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD----MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~----~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++|....+. ....+||+|++|+++....... .... ........+..+.+.|+|||++++.+.
T Consensus 248 ~gDtL~~~~-------~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~-~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDG-------ENLPKAHIVATNPPFGSAAGTNITRTFVHP-TSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHH-------HTSCCEEEEEECCCCTTCSSCCCCSCCSSC-CSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCCCccccc-------ccccCCeEEEECCCcccccchhhHhhcCCC-CCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 898776431 1346899999998764321100 0000 000112467788999999999998654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-07 Score=76.30 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=50.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++. .+|+|+|+++.. ..++++++++|+.+.+
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~---------------~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~---- 89 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRC---------------NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK---- 89 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---------------SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC----
T ss_pred CCCCEEEEEeCCchHHHHHHHHcC---------------CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCC----
Confidence 578899999999999999999863 589999999731 2357899999987643
Q ss_pred HHHhcCC-CcccEEEeCCCC
Q 025715 111 VIRHFDG-CKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~~-~~~DlVlsD~~~ 129 (249)
+.. ..+ .|++|++.
T Consensus 90 ----~~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 90 ----FPKNQSY-KIFGNIPY 104 (244)
T ss_dssp ----CCSSCCC-EEEEECCG
T ss_pred ----cccCCCe-EEEEeCCc
Confidence 222 344 68888754
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-07 Score=78.46 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=54.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++ + .+|+|||+++.. ..++++++++|+.+.+
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~-~--------------~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~---- 109 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKN-A--------------KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVD---- 109 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-S--------------SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSC----
T ss_pred CCcCEEEEECCCchHHHHHHHhc-C--------------CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCC----
Confidence 57889999999999999999986 3 699999999843 1368899999998753
Q ss_pred HHHhcCCCcccEEEeCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~ 130 (249)
+...+||+|++|++.+
T Consensus 110 ----~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 110 ----LNKLDFNKVVANLPYQ 125 (295)
T ss_dssp ----GGGSCCSEEEEECCGG
T ss_pred ----cccCCccEEEEeCccc
Confidence 2334699999997543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3e-06 Score=75.36 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=74.0
Q ss_pred hhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeec
Q 025715 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQG 100 (249)
Q Consensus 31 ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~g 100 (249)
.+.+.+. +.+..+|||+|||+|.++..++++.+ ..+++..|+.++. ..++|+++.+
T Consensus 170 ~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p-------------~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~g 235 (353)
T 4a6d_A 170 SVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYP-------------GCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEG 235 (353)
T ss_dssp HHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCS-------------SCEEEEEECHHHHHHHHHHSCC--CCSEEEEES
T ss_pred HHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCC-------------CceeEeccCHHHHHHHHHhhhhcccCceeeecC
Confidence 4444554 35567999999999999999999875 5788888874321 1357999999
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
|+.+.+ ...+|+|+.-... ++++... +..+|+.+.+.|+|||++++...
T Consensus 236 D~~~~~----------~~~~D~~~~~~vl-----h~~~d~~----~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 236 DFFKDP----------LPEADLYILARVL-----HDWADGK----CSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp CTTTSC----------CCCCSEEEEESSG-----GGSCHHH----HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ccccCC----------CCCceEEEeeeec-----ccCCHHH----HHHHHHHHHhhCCCCCEEEEEEe
Confidence 997643 2357999875332 2223221 34578899999999999988643
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-06 Score=78.09 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=52.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||+|.++..+++. . .+|+|+|+++.. .+.+++++++|+.+.-.
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~-~--------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~- 348 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQ-A--------------ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT- 348 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT-S--------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS-
T ss_pred CCCCEEEECCCCCCHHHHHHHhh-C--------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhh-
Confidence 46789999999999999999875 3 699999999832 24578999999976210
Q ss_pred HHHHHhcCCCcccEEEeCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~ 128 (249)
.+ .+..++||+|++|++
T Consensus 349 -~~--~~~~~~fD~Vv~dPP 365 (433)
T 1uwv_A 349 -KQ--PWAKNGFDKVLLDPA 365 (433)
T ss_dssp -SS--GGGTTCCSEEEECCC
T ss_pred -hh--hhhcCCCCEEEECCC
Confidence 00 023458999999974
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=76.49 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=54.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC-CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~-~~v~~~~gDi~~~~~~~ 109 (249)
+++.+|||+|||+|+++..++++.+ .++|+|+|+++.+ .. .+++++++|+.+.+.
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~-------------~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~-- 89 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCP-------------GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF-- 89 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH--
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHH--
Confidence 5788999999999999999998863 4799999999842 11 478999999876531
Q ss_pred HHHHhcCCCcccEEEeCC
Q 025715 110 VVIRHFDGCKADLVVCDG 127 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~ 127 (249)
........+||.|++|+
T Consensus 90 -~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 90 -LLKTLGIEKVDGILMDL 106 (301)
T ss_dssp -HHHHTTCSCEEEEEEEC
T ss_pred -HHHhcCCCCCCEEEEcC
Confidence 11222225799999986
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-06 Score=82.35 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=70.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------------CCC---ceEeecCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------------IEG---VIQVQGDI 102 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------------~~~---v~~~~gDi 102 (249)
.++.+|||.|||+|++...++++++.. ....++|+|+++... ..+ ..+...|+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei----------~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~ 389 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNV----------MPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDV 389 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTC----------CGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhccc----------CCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecch
Confidence 457899999999999999998876411 135899999998420 112 23334455
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHH--H-H-----------------HHHHHHHHHHHHhccCCCE
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV--Q-S-----------------QLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~--~-~-----------------~l~~~~l~~a~~~Lk~gG~ 162 (249)
.+... ....+||+|++|++..... ..+... . . .+....+..+.++|++||+
T Consensus 390 L~~~~-------~~~~kFDVVIgNPPYg~~~--~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGr 460 (878)
T 3s1s_A 390 CSLNP-------EDFANVSVVVMNPPYVSGV--TDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTV 460 (878)
T ss_dssp GGCCG-------GGGTTEEEEEECCBCCSSC--CCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCE
T ss_pred hcccc-------cccCCCCEEEECCCccccc--cchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcE
Confidence 43211 1236799999998653211 111110 0 0 1244567889999999999
Q ss_pred EEEEEec
Q 025715 163 FIAKIFR 169 (249)
Q Consensus 163 lv~k~~~ 169 (249)
+++-+-.
T Consensus 461 LAfIlP~ 467 (878)
T 3s1s_A 461 ISAIMPK 467 (878)
T ss_dssp EEEEEET
T ss_pred EEEEECh
Confidence 9986543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=62.18 Aligned_cols=105 Identities=21% Similarity=0.199 Sum_probs=69.7
Q ss_pred hhhHHhhhhhc--CcccCCCeEEEEcCCCC-hHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCC
Q 025715 26 AFKLLQIDEEF--NIFEGVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDI 102 (249)
Q Consensus 26 ~~KL~ei~~~~--~~~~~g~~vLDLG~gpG-~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi 102 (249)
++||+|-...| +-.+++.+|||+|||+| ..+.+|++..+ ..|+|+|+++.+.- +++.|+
T Consensus 18 ~~~m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g--------------~~V~atDInp~Av~----~v~dDi 79 (153)
T 2k4m_A 18 GSHMWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSK--------------VDLVLTDIKPSHGG----IVRDDI 79 (153)
T ss_dssp CCHHHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSC--------------CEEEEECSSCSSTT----EECCCS
T ss_pred hhhHHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCC--------------CeEEEEECCccccc----eEEccC
Confidence 46776544433 11245679999999999 58888887544 68999999997632 889999
Q ss_pred CChhhHHHHHHhcCCCcccEEEe-CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 103 TNARTAEVVIRHFDGCKADLVVC-DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVls-D~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
+++... +. +.||+|.+ ++++. |+..++++|.++ |..|+++.+..+.
T Consensus 80 F~P~~~------~Y-~~~DLIYsirPP~E--------------l~~~i~~lA~~v---~adliI~pL~~E~ 126 (153)
T 2k4m_A 80 TSPRME------IY-RGAALIYSIRPPAE--------------IHSSLMRVADAV---GARLIIKPLTGED 126 (153)
T ss_dssp SSCCHH------HH-TTEEEEEEESCCTT--------------THHHHHHHHHHH---TCEEEEECBTTBC
T ss_pred CCCccc------cc-CCcCEEEEcCCCHH--------------HHHHHHHHHHHc---CCCEEEEcCCCCc
Confidence 986521 11 37999955 33221 233455555543 7788888776544
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-06 Score=73.88 Aligned_cols=114 Identities=12% Similarity=-0.045 Sum_probs=67.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCC-C--------CCC----------------CCCCCCCeEEEecCCCCC----
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK-L--------SPD----------------SREGDLPLIVAIDLQPMA---- 90 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~-~--------~~~----------------~~~~~~~~vvavDi~~~~---- 90 (249)
+++..|||.|||+|.++..++.......+ . |.. .+......|+|+|+++..
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 46789999999999999888765431100 0 000 001233679999999842
Q ss_pred -------CCC-CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCE
Q 025715 91 -------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 91 -------~~~-~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~ 162 (249)
.+. .+++.++|+.+.. ...+||+|++|++. |.+..+......++ ..+...++. -+||.
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~---------~~~~fD~Iv~NPPY---g~rl~~~~~l~~ly-~~lg~~lk~-~~g~~ 345 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQ---------TEDEYGVVVANPPY---GERLEDEEAVRQLY-REMGIVYKR-MPTWS 345 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCC---------CCCCSCEEEECCCC---CCSHHHHHHHHHHH-HHHHHHHHT-CTTCE
T ss_pred HHHHHHcCCCCceEEEECChHhCC---------CCCCCCEEEECCCC---ccccCCchhHHHHH-HHHHHHHhc-CCCCE
Confidence 233 4889999998753 23589999999854 22222222222232 233333343 35888
Q ss_pred EEEEE
Q 025715 163 FIAKI 167 (249)
Q Consensus 163 lv~k~ 167 (249)
+.+-+
T Consensus 346 ~~iit 350 (393)
T 3k0b_A 346 VYVLT 350 (393)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88744
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.18 E-value=7e-06 Score=74.02 Aligned_cols=114 Identities=12% Similarity=-0.013 Sum_probs=67.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCC-C--------CCC----------------CCCCCCCeEEEecCCCCC----
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK-L--------SPD----------------SREGDLPLIVAIDLQPMA---- 90 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~-~--------~~~----------------~~~~~~~~vvavDi~~~~---- 90 (249)
.++.+|||+|||+|+++..++.......+ . +.. .+......|+|+|+++..
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 56789999999999999988776421100 0 000 001123689999999842
Q ss_pred -------CCC-CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCE
Q 025715 91 -------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 91 -------~~~-~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~ 162 (249)
.+. .+++.++|+.+.. ...++|+|++|++.. .+..+......++ ..+...++. -+||.
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~---------~~~~~D~Iv~NPPyg---~rl~~~~~l~~ly-~~lg~~lk~-~~g~~ 339 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFK---------SEDEFGFIITNPPYG---ERLEDKDSVKQLY-KELGYAFRK-LKNWS 339 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCC---------CSCBSCEEEECCCCC---CSHHHHHHHHHHH-HHHHHHHHT-SBSCE
T ss_pred HHHHHHcCCCCceEEEECChhhcC---------cCCCCcEEEECCCCc---CccCCHHHHHHHH-HHHHHHHhh-CCCCE
Confidence 122 5788999987743 235899999998642 2211122222222 223333333 34888
Q ss_pred EEEEE
Q 025715 163 FIAKI 167 (249)
Q Consensus 163 lv~k~ 167 (249)
+.+-+
T Consensus 340 ~~iit 344 (385)
T 3ldu_A 340 YYLIT 344 (385)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87744
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=72.55 Aligned_cols=114 Identities=11% Similarity=-0.064 Sum_probs=68.4
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCC-C--------CCC----------------CCCCCCCeEEEecCCCCC----
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK-L--------SPD----------------SREGDLPLIVAIDLQPMA---- 90 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~-~--------~~~----------------~~~~~~~~vvavDi~~~~---- 90 (249)
+++..+||.+||+|++...++.......+ . +.. .+......|+|+|+++..
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 46789999999999999888765431100 0 000 001123579999999842
Q ss_pred -------CCC-CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCE
Q 025715 91 -------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 91 -------~~~-~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~ 162 (249)
.+. .+++.++|+.+.. ...+||+|++|++.. .+-.+......++. .+...++. .+||.
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~---------~~~~fD~Iv~NPPYG---~rl~~~~~l~~ly~-~lg~~lk~-~~g~~ 338 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFK---------TNKINGVLISNPPYG---ERLLDDKAVDILYN-EMGETFAP-LKTWS 338 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCC---------CCCCSCEEEECCCCT---TTTSCHHHHHHHHH-HHHHHHTT-CTTSE
T ss_pred HHHHHHcCCCCceEEEECChHHCC---------ccCCcCEEEECCchh---hccCCHHHHHHHHH-HHHHHHhh-CCCcE
Confidence 233 4788999998753 235899999998643 22223333333332 23333333 45999
Q ss_pred EEEEE
Q 025715 163 FIAKI 167 (249)
Q Consensus 163 lv~k~ 167 (249)
+.+-+
T Consensus 339 ~~iit 343 (384)
T 3ldg_A 339 QFILT 343 (384)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88744
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.7e-06 Score=80.03 Aligned_cols=114 Identities=16% Similarity=0.042 Sum_probs=73.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~ 106 (249)
.++.+|+|.|||+|+|...+.+++... ....++|+|+++.. .+ +++.+.++|....+
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~----------~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d 289 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQP----------QTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDED 289 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCT----------TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhc----------cCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccc
Confidence 467899999999999999988876411 24689999999842 12 34567889876531
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCC----cCH-HH-------HHHHHHHHHHHHHHhcc-CCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHD----MDE-FV-------QSQLILAGLTVVTHVLK-EGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~----~~~-~~-------~~~l~~~~l~~a~~~Lk-~gG~lv~k~~ 168 (249)
. ......+||+|++|+++....... .+. +. ........+..+.+.|+ +||++++-+.
T Consensus 290 ~-----p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 290 W-----PTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp S-----CCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred c-----cccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 0 002346899999998765221000 000 00 00011246788899999 9999988654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.2e-07 Score=76.61 Aligned_cols=70 Identities=20% Similarity=0.097 Sum_probs=51.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC-------CC-----------CCC-CceEeec
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-------MA-----------PIE-GVIQVQG 100 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~-------~~-----------~~~-~v~~~~g 100 (249)
.++.+|||+|||+|.++..++.. + ++|+++|+++ .. .+. +++++++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~-g--------------~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~ 146 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL-G--------------LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFG 146 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT-T--------------CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEES
T ss_pred CCcCeEEEeeCccCHHHHHHHHh-C--------------CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEEC
Confidence 46789999999999999999875 3 6899999999 32 122 3889999
Q ss_pred CCCChhhHHHHHHhcCC--CcccEEEeCCCCC
Q 025715 101 DITNARTAEVVIRHFDG--CKADLVVCDGAPD 130 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~--~~~DlVlsD~~~~ 130 (249)
|+.+.. . .+.+ ++||+|++|+.+.
T Consensus 147 d~~~~l--~----~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 147 NAAEQM--P----ALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp CHHHHH--H----HHHHHHCCCSEEEECCCC-
T ss_pred CHHHHH--H----hhhccCCCccEEEECCCCC
Confidence 976521 1 1222 5799999998653
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-06 Score=73.79 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=51.6
Q ss_pred cCC--CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------C----C-CCceE
Q 025715 40 EGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------P----I-EGVIQ 97 (249)
Q Consensus 40 ~~g--~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~----~-~~v~~ 97 (249)
++| .+|||+|||.|..+..++.+ + ++|++||+++.. . + .++++
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~-g--------------~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~ 149 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASV-G--------------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHH-T--------------CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEE
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEE
Confidence 466 89999999999999999987 4 589999999831 0 2 35778
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCC
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~ 130 (249)
+++|..+. ...+. .+||+|+.|+.+.
T Consensus 150 ~~~D~~~~------L~~~~-~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 150 IHASSLTA------LTDIT-PRPQVVYLDPMFP 175 (258)
T ss_dssp EESCHHHH------STTCS-SCCSEEEECCCCC
T ss_pred EECCHHHH------HHhCc-ccCCEEEEcCCCC
Confidence 88887542 11233 3799999998654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-06 Score=79.94 Aligned_cols=68 Identities=28% Similarity=0.251 Sum_probs=50.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||+|||.|.++..++++ | ..|+|||+++.. ...++++.++|+.+.
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~-g--------------a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~--- 126 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK-G--------------ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEV--- 126 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHH---
T ss_pred CCCCeEEEECCCCcHHHHHHHhC-C--------------CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHH---
Confidence 45679999999999999999975 4 799999999832 112467777876543
Q ss_pred HHHHHhcCCCcccEEEeCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~ 128 (249)
...+.+++||+|+|-..
T Consensus 127 ---~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 127 ---IAALEEGEFDLAIGLSV 143 (569)
T ss_dssp ---HHHCCTTSCSEEEEESC
T ss_pred ---hhhccCCCccEEEECcc
Confidence 23345678999999543
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-06 Score=79.20 Aligned_cols=114 Identities=17% Similarity=0.027 Sum_probs=70.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------CCCCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~~~~v~~~~gDi~~~~ 106 (249)
++|.+|||||||+|..+.++++. + .+|++||+++.. .+.+++++++|+.+.-
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-g--------------~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L 156 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-A--------------SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYL 156 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-C--------------SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSH
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-C--------------CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhh
Confidence 45899999999999999988764 2 699999999842 1245889999998631
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCC-CCCCcCHHHHHHHHHHHHHHHHH-hccCCCEEEEEEecCCCHHHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVT-GLHDMDEFVQSQLILAGLTVVTH-VLKEGGKFIAKIFRGKDTSLLYC 178 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~-g~~~~~~~~~~~l~~~~l~~a~~-~Lk~gG~lv~k~~~~~~~~~l~~ 178 (249)
.. +...+||+|++|++.... |.+..+... +..-+..... ++..+..+++|+...-+....+.
T Consensus 157 --~~----~~~~~fDvV~lDPPrr~~~~grv~~led----~~P~l~~~~~~l~~~~~~~~vK~sP~ld~~~~~~ 220 (410)
T 3ll7_A 157 --PL----IKTFHPDYIYVDPARRSGADKRVYAIAD----CEPDLIPLATELLPFCSSILAKLSPMIDLWDTLQ 220 (410)
T ss_dssp --HH----HHHHCCSEEEECCEEC-----CCCCGGG----EESCHHHHHHHHGGGSSEEEEEECTTSCHHHHHH
T ss_pred --hh----ccCCCceEEEECCCCcCCCCceEEehhh----cCCCHHHHHHHHHhhCCcEEEEcCCCCChHHHHh
Confidence 11 112479999999853321 111111100 0001222233 45567788899877777665443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-06 Score=73.04 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=51.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++++. .+|+|+|+++.. ..++++++++|+.+.+..
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~~---------------~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~-- 90 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTEC---------------DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS-- 90 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTTS---------------SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG--
T ss_pred CCcCEEEEEcccccHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH--
Confidence 578899999999999999998752 699999999732 135789999999886421
Q ss_pred HHHhcCCCcccEEEeCCC
Q 025715 111 VIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~ 128 (249)
+.+.++.+| |++|.+
T Consensus 91 --~~~~~~~~~-vv~NlP 105 (255)
T 3tqs_A 91 --SVKTDKPLR-VVGNLP 105 (255)
T ss_dssp --GSCCSSCEE-EEEECC
T ss_pred --HhccCCCeE-EEecCC
Confidence 111235688 888864
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.9e-06 Score=71.58 Aligned_cols=68 Identities=15% Similarity=-0.028 Sum_probs=52.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.++ +|||+|||+|.++..++++. .+|+|+|+++.. .-.+++++++|+.+.+..
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~---------------~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~--- 106 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAG---------------AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE--- 106 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTT---------------CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG---
T ss_pred CCC-eEEEEeCchHHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh---
Confidence 567 99999999999999999763 589999999843 124689999999875420
Q ss_pred HHhcCCCcccEEEeCCCCC
Q 025715 112 IRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~ 130 (249)
....+|.|++|.+.+
T Consensus 107 ----~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 107 ----EVPQGSLLVANLPYH 121 (271)
T ss_dssp ----GSCTTEEEEEEECSS
T ss_pred ----hccCccEEEecCccc
Confidence 112689999998544
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.1e-05 Score=65.45 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=73.4
Q ss_pred CcccEEEeCCCCCCCCCCCcCHH-HHHHHHHHHHHHHHHhccCCCEEEEEEecCCC--HHHHHHHHhcCCCeeEEecCCC
Q 025715 118 CKADLVVCDGAPDVTGLHDMDEF-VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD--TSLLYCQLKLFFPVVTFAKPKS 194 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~~-~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~--~~~l~~~l~~~f~~v~~~kP~~ 194 (249)
++||+|+.|+.-...-.+-.|-+ ..+.+ ..+-.-|+++|+|||+++++-+.-.+ .+.+...+.+.|+.+++.+|.-
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l-~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv~~P~c 288 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKL-QMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALKPPC 288 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHH-HHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECCTT
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHH-HHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeeeecCcc
Confidence 68999999985433211111111 11222 34566788999999999999885433 5668888899999999999965
Q ss_pred CCCCCceEEEEEeeccC-CCCCCchhhhHhHHhh
Q 025715 195 SRNSSIEAFAVCENYFP-PEGFNPKDLHRLLEKV 227 (249)
Q Consensus 195 sr~~s~E~y~v~~g~~~-~~~~~~~~~~~~~~~~ 227 (249)
.- +++|.++|-.+|-+ ..-.++--|+..+.++
T Consensus 289 v~-snTEv~~vF~~~Dng~r~~t~h~ln~~ls~i 321 (324)
T 3trk_A 289 VT-SNTEMFFLFSNFDNGRRNFTTHVMNNQLNAA 321 (324)
T ss_dssp CC-BTTCEEEEEEEECCCCCCCCSHHHHHHHHHH
T ss_pred cc-ccceEEEEEEeccCCccccCHHHhhhhhhhh
Confidence 44 38899999999877 3444555565555543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.3e-05 Score=64.21 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=96.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------CCCCceEeecCCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDITN 104 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------~~~~v~~~~gDi~~ 104 (249)
...+||=+|.|-|+....+++..+ ..+|+.|||++.. .-++++.+.+|...
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~-------------v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~ 149 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKN-------------VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVN 149 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTT
T ss_pred CCCeEEEECCCchHHHHHHHHcCC-------------cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHH
Confidence 457999999999999988876532 4689999999731 12578889999876
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCC-CCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDV-TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~-~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~ 179 (249)
.- + -..++||+|+.|..-.. .+..-.. ...+..+.+.|+|||.+++..-.+. ....+...
T Consensus 150 ~l------~-~~~~~yDvIi~D~~dp~~~~~~L~t--------~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~ 214 (294)
T 3o4f_A 150 FV------N-QTSQTFDVIISDCTDPIGPGESLFT--------SAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRK 214 (294)
T ss_dssp TT------S-CSSCCEEEEEESCCCCCCTTCCSSC--------CHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHH
T ss_pred HH------h-hccccCCEEEEeCCCcCCCchhhcC--------HHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHH
Confidence 32 1 13468999999974221 1111111 2357788999999999998654332 23455566
Q ss_pred HhcCCCeeEEecCC-CCCCCCceEEEEEeeccCCCCCCchhhh
Q 025715 180 LKLFFPVVTFAKPK-SSRNSSIEAFAVCENYFPPEGFNPKDLH 221 (249)
Q Consensus 180 l~~~f~~v~~~kP~-~sr~~s~E~y~v~~g~~~~~~~~~~~~~ 221 (249)
++..|..|..+... .+-++..=.+.+|..-......++..++
T Consensus 215 l~~~F~~v~~~~~~vPty~~g~w~f~~as~~~~~~~~~~~~~~ 257 (294)
T 3o4f_A 215 LSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQ 257 (294)
T ss_dssp HHHHCSEEEEEEECCTTSSSSCEEEEEEESCTTGGGCCHHHHH
T ss_pred HHhhCCceeeeeeeeccCCCcceeheeEECCCccccCChHHHh
Confidence 77789988775321 1222333355666543333333444343
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=75.34 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=67.1
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCC--CCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhHH
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPD--SREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAE 109 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~--~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~~ 109 (249)
+|+|.|||+|+|...+.+.+....+.... .+......++|+|+++.. .+. .+.+.++|....+
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~--- 323 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDD--- 323 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSC---
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCc---
Confidence 99999999999998876654200000000 000002579999999842 111 2333677865432
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCc----C--------------HHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDM----D--------------EFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~----~--------------~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+...+||+|++|+++........ + ...........+..+.+.|+|||++++-+.
T Consensus 324 ----~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP 396 (544)
T 3khk_A 324 ----QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA 396 (544)
T ss_dssp ----SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence 123468999999997653210000 0 000000112467788999999999988654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.3e-06 Score=78.63 Aligned_cols=96 Identities=24% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------C-CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~-~~v~~~~gDi~~~~~~~~ 110 (249)
+..|||+|||+|-.+...++..... +...+|+|||-++++. + ..|++++||+.+.+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~---------~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~---- 424 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQA---------DRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWV---- 424 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHT---------TCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCC----
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhc---------CCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceecc----
Confidence 4689999999999866544432100 0224799999999752 1 35899999999864
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
+ ++++|+|+|-.. |..-..| .+ . ..+..+-++|||||.++
T Consensus 425 ----L-PEKVDIIVSEwM----G~fLl~E-~m---l-evL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 425 ----A-PEKADIIVSELL----GSFADNE-LS---P-ECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ----C-SSCEEEEECCCC----BTTBGGG-CH---H-HHHHHHGGGEEEEEEEE
T ss_pred ----C-CcccCEEEEEcC----ccccccc-CC---H-HHHHHHHHhcCCCcEEc
Confidence 2 478999999742 2111122 11 1 34566788999999976
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.7e-05 Score=74.43 Aligned_cols=118 Identities=11% Similarity=-0.082 Sum_probs=70.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCC-CCC----C---CCC---------------------CCCCCeEEEecCCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPA-KLS----P---DSR---------------------EGDLPLIVAIDLQPMA 90 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~-~~~----~---~~~---------------------~~~~~~vvavDi~~~~ 90 (249)
+++..+||.|||+|++...++....... +.. + +.. ......|+|+|+++..
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 4678999999999999988776532100 000 0 000 0123689999999842
Q ss_pred -----------CCC-CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc
Q 025715 91 -----------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 91 -----------~~~-~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (249)
.+. .+++.++|+.+... ....+++|+|++|++. |.+-.+......+ ...+...++.+.
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~------~~~~~~~d~Iv~NPPY---G~Rlg~~~~l~~l-y~~l~~~lk~~~ 338 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTN------PLPKGPYGTVLSNPPY---GERLDSEPALIAL-HSLLGRIMKNQF 338 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCC------SCTTCCCCEEEECCCC---CC---CCHHHHHH-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCcc------ccccCCCCEEEeCCCc---cccccchhHHHHH-HHHHHHHHHhhC
Confidence 233 37888999876421 0112379999999864 2221122222223 345666777788
Q ss_pred CCCEEEEEE
Q 025715 159 EGGKFIAKI 167 (249)
Q Consensus 159 ~gG~lv~k~ 167 (249)
|||++.+-+
T Consensus 339 ~g~~~~ilt 347 (703)
T 3v97_A 339 GGWNLSLFS 347 (703)
T ss_dssp TTCEEEEEE
T ss_pred CCCeEEEEe
Confidence 999988743
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-05 Score=62.03 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=55.4
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhc
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
+++|.+|||+|||... ... +.+... .+ . -.++++.++|+.+.+. ..+
T Consensus 10 ~~~g~~vL~~~~g~v~-vD~s~~ml~~a~--------------~~------~----~~~~~~~~~d~~~~~~-----~~~ 59 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSP-VEALKGLVDKLQ--------------AL------T----GNEGRVSVENIKQLLQ-----SAH 59 (176)
T ss_dssp CCTTSEEEEEECTTSC-HHHHHHHHHHHH--------------HH------T----TTTSEEEEEEGGGGGG-----GCC
T ss_pred CCCCCEEEEecCCcee-eeCCHHHHHHHH--------------Hh------c----ccCcEEEEechhcCcc-----ccC
Confidence 4789999999999865 211 111111 00 0 0136778888876531 012
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+++||+|++.....+.. .+. ..++..+.++|||||.|++..
T Consensus 60 ~~~~fD~V~~~~~l~~~~-~~~---------~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 60 KESSFDIILSGLVPGSTT-LHS---------AEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp CSSCEEEEEECCSTTCCC-CCC---------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEeEEEECChhhhcc-cCH---------HHHHHHHHHHCCCCEEEEEEc
Confidence 467899999976544320 111 257889999999999999853
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00021 Score=66.32 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=85.2
Q ss_pred CcccEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC--HHHHHHHHhcCCCeeEEecCCC
Q 025715 118 CKADLVVCDGAPDVTGLHDMDE-FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD--TSLLYCQLKLFFPVVTFAKPKS 194 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~~~~-~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~--~~~l~~~l~~~f~~v~~~kP~~ 194 (249)
++||+|+.|..-.....+-.|- ...+. ...+-.-|+++|+|||+++++.+.-.+ .+.+...+.+.|..+++.+|.-
T Consensus 220 ~ryDlvfvn~~t~yr~HHyqQCeDHa~~-l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~rv~~p~~ 298 (670)
T 4gua_A 220 ARYDLVFINIGTKYRNHHFQQCEDHAAT-LKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDC 298 (670)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHH-HHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEEEECCTT
T ss_pred CcccEEEEecCCCcccchHHHHHHHHHH-HHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeeeeeCCCc
Confidence 5899999998543322211111 11122 234566788999999999999885333 5568888889999999999966
Q ss_pred CCCCCceEEEEEeeccC-C-CCCCchhhhHhHHhhCCCCCCCCCccccCceEE
Q 025715 195 SRNSSIEAFAVCENYFP-P-EGFNPKDLHRLLEKVGSPWGGEDQGQCACNIHY 245 (249)
Q Consensus 195 sr~~s~E~y~v~~g~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (249)
.. +++|.+++-.+|-. + ...++--|+..++++-+- +..+.-||-..|-
T Consensus 299 ~~-snTEv~~~f~~~Dn~r~r~~~~~~l~~~l~~iy~g--~~~~aG~APsfrI 348 (670)
T 4gua_A 299 VS-SNTEMYLIFRQLDNSRTRQFTPHHLNCVISSVYEG--TRDGVGAAPSYRT 348 (670)
T ss_dssp CS-BTTCEEEEEEEECCCSSCCCCSHHHHHHHHHHHTT--SCCCCCCCCCEEE
T ss_pred cc-cCceEEEEEEecCCCcccccCHHHhhhHHHHhhhc--cccccCcCcceeE
Confidence 54 45899999999986 3 455777788888887663 4455555555443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.9e-05 Score=64.78 Aligned_cols=91 Identities=11% Similarity=0.018 Sum_probs=60.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC--CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI--EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~--~~v~~~~gDi~~~~~~~ 109 (249)
.+..+|||||||.|-++..+. + ...++|+|+++-. .. ....+..+|....+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~-------------~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~--- 164 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---G-------------IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP--- 164 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---T-------------CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC---
T ss_pred CCCCeEEEecCCccHHHHHhc---c-------------CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC---
Confidence 457899999999999998776 3 4799999999832 11 33466778887643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
..+++|+|++.-...+ ..+............|+++|.+|-
T Consensus 165 ------~~~~~DvvLllk~lh~----------LE~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 165 ------PAEAGDLALIFKLLPL----------LEREQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp ------CCCBCSEEEEESCHHH----------HHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred ------CCCCcchHHHHHHHHH----------hhhhchhhHHHHHHHhcCCCEEEE
Confidence 3468999988643211 111111223355668999987774
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.8e-05 Score=65.47 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=70.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHh------cCCCCCCCCCCCCCCCeEEEecCCCCC-----------------------
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKL------YLPAKLSPDSREGDLPLIVAIDLQPMA----------------------- 90 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~------~~~~~~~~~~~~~~~~~vvavDi~~~~----------------------- 90 (249)
+++.+||++|+|+|.-+..+++.. .+..+ ....+++++|..|+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~-------~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~ 131 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQ-------LQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQA 131 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSS-------CCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCC-------cceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHH
Confidence 456899999999999888766543 31000 002589999998731
Q ss_pred C------------C----CCceEeecCCCChhhHHHHHHhcCC---CcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 025715 91 P------------I----EGVIQVQGDITNARTAEVVIRHFDG---CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLT 151 (249)
Q Consensus 91 ~------------~----~~v~~~~gDi~~~~~~~~i~~~~~~---~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~ 151 (249)
. + .+++.+.||+.+. ...+.. ..||+|+.|+........-++ ...+.
T Consensus 132 ~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~------l~~~~~~~~~~~D~iflD~fsp~~~p~lw~--------~~~l~ 197 (257)
T 2qy6_A 132 QWPMPLPGCHRLLLDEGRVTLDLWFGDINEL------ISQLDDSLNQKVDAWFLDGFAPAKNPDMWT--------QNLFN 197 (257)
T ss_dssp TCCCSCSEEEEEEEC--CEEEEEEESCHHHH------GGGSCGGGTTCEEEEEECSSCTTTCGGGCC--------HHHHH
T ss_pred hccccccchhheeccCCceEEEEEECcHHHH------HhhcccccCCeEEEEEECCCCcccChhhcC--------HHHHH
Confidence 0 1 1244567776541 112222 279999999732111000012 24677
Q ss_pred HHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CC
Q 025715 152 VVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 185 (249)
Q Consensus 152 ~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~ 185 (249)
.+.++|+|||+|+. +... ..+...|... |.
T Consensus 198 ~l~~~L~pGG~l~t--ysaa--~~vrr~L~~aGF~ 228 (257)
T 2qy6_A 198 AMARLARPGGTLAT--FTSA--GFVRRGLQEAGFT 228 (257)
T ss_dssp HHHHHEEEEEEEEE--SCCB--HHHHHHHHHHTEE
T ss_pred HHHHHcCCCcEEEE--EeCC--HHHHHHHHHCCCE
Confidence 88999999999984 4332 2344444443 65
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.75 E-value=1.6e-05 Score=76.24 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC-CCceEeecCCCChhhHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~-~~v~~~~gDi~~~~~~~~ 110 (249)
+..|||+|||+|..+..+......+....-+...-...+|+|||.++++ .+ ..|++++||+.+.+....
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 4689999999999986432221100000000000013599999999853 12 348999999988653110
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
.-..+++|+|+|-.. |..-..+ +....|..+.+.|||||.++
T Consensus 490 ---~~~~ekVDIIVSElm----Gsfl~nE-----L~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 ---DRGFEQPDIIVSELL----GSFGDNE-----LSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp ---HTTCCCCSEEEECCC----BTTBGGG-----SHHHHHHTTGGGSCTTCEEE
T ss_pred ---cCCCCcccEEEEecc----ccccchh-----ccHHHHHHHHHhCCCCcEEE
Confidence 112478999999753 2111111 11223455578999999876
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.6e-05 Score=67.84 Aligned_cols=94 Identities=10% Similarity=-0.022 Sum_probs=63.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CC--CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI--EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~--~~v~~~~gDi~~~~~~~ 109 (249)
.+..+|||||||+|-++..++... +...|+|+|+++-. .. .+..+...|.....
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~-------------p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~--- 194 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLP-------------AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR--- 194 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCC-------------TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC---
T ss_pred CCCceeeeeccCccHHHHHHHhhC-------------CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC---
Confidence 456799999999999998887643 36899999999832 01 23456677776543
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
..+.+|+|++.-...+- + +-...+.-.....|+++|.+|-
T Consensus 195 ------p~~~~DvaL~lkti~~L-----e-----~q~kg~g~~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 195 ------LDEPADVTLLLKTLPCL-----E-----TQQRGSGWEVIDIVNSPNIVVT 234 (281)
T ss_dssp ------CCSCCSEEEETTCHHHH-----H-----HHSTTHHHHHHHHSSCSEEEEE
T ss_pred ------CCCCcchHHHHHHHHHh-----h-----hhhhHHHHHHHHHhCCCCEEEe
Confidence 45789999987532210 0 0011122256789999999885
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=63.00 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=54.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----C--CCceEeecCCCChhhHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++..+||.+||.|+.|..++++ + ++|+|+|.++.+. + ++++++++|..+... +.
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~-~--------------g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~---~L 82 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILER-G--------------GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKR---HL 82 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHH---HH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHC-C--------------CEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHH---HH
Confidence 67889999999999999999986 4 7999999998421 2 578999999887542 23
Q ss_pred HhcCCCcccEEEeCC
Q 025715 113 RHFDGCKADLVVCDG 127 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~ 127 (249)
+..+..+||.|+.|.
T Consensus 83 ~~~g~~~vDgIL~DL 97 (285)
T 1wg8_A 83 AALGVERVDGILADL 97 (285)
T ss_dssp HHTTCSCEEEEEEEC
T ss_pred HHcCCCCcCEEEeCC
Confidence 333446899999985
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.68 E-value=6.1e-05 Score=63.92 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=50.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++. +. +.+ ..+|+|+|+++.. ..++++++++|+.+.+...
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~-~~~-------------~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~- 83 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PV-GER-------------LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGE- 83 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HH-HTT-------------CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHH-
T ss_pred CCcCEEEEECCCCcHHHH-hh-hCC-------------CCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHH-
Confidence 578899999999999999 54 322 2349999999731 1247899999998754321
Q ss_pred HHHhcCCCcccEEEeCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~ 130 (249)
..+. . +..|.|++|.+..
T Consensus 84 ~~~~-~-~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 84 LAEK-M-GQPLRVFGNLPYN 101 (252)
T ss_dssp HHHH-H-TSCEEEEEECCTT
T ss_pred hhcc-c-CCceEEEECCCCC
Confidence 1100 1 2468999998643
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.6e-05 Score=67.31 Aligned_cols=73 Identities=14% Similarity=0.037 Sum_probs=51.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCC-CCeEEEecCCCCC-----C--CCCceEeecCCCChhhHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD-LPLIVAIDLQPMA-----P--IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~-~~~vvavDi~~~~-----~--~~~v~~~~gDi~~~~~~~~i 111 (249)
.++.+|||+|||+|.++..++++.. . .++|+|+|+++.. . ..+++++++|+.+.+..
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~------------~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~--- 105 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLA------------TPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG--- 105 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHC------------BTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG---
T ss_pred CCcCEEEEEccccHHHHHHHHHhCC------------CcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh---
Confidence 5788999999999999999998764 1 2459999999732 1 25788999999875421
Q ss_pred HHhcCCC--cccEEEeCCC
Q 025715 112 IRHFDGC--KADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~--~~DlVlsD~~ 128 (249)
+.+... ..+.|++|.+
T Consensus 106 -~~~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 106 -SIARPGDEPSLRIIGNLP 123 (279)
T ss_dssp -GGSCSSSSCCEEEEEECC
T ss_pred -HhcccccCCceEEEEccC
Confidence 111111 3457888764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00051 Score=61.57 Aligned_cols=123 Identities=14% Similarity=0.006 Sum_probs=67.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcC-CCC-CCCCCCCCCCCeEEEecCCCCC------CCCC-----------------ce
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYL-PAK-LSPDSREGDLPLIVAIDLQPMA------PIEG-----------------VI 96 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~-~~~-~~~~~~~~~~~~vvavDi~~~~------~~~~-----------------v~ 96 (249)
+.+|+|||||+|..|..+...+-. .+. ........+.-.|+..|+-... .++. .-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999999876332210 000 0000001245688888876532 0111 01
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCC------------CcC--------HHH-------HHHHHHHH
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH------------DMD--------EFV-------QSQLILAG 149 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~------------~~~--------~~~-------~~~l~~~~ 149 (249)
++.|.-.+. ..+.++.+++|+|+|..+..|.... |.. ++. ..+-....
T Consensus 133 f~~gvpgSF-----y~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~f 207 (374)
T 3b5i_A 133 FVAGVPGSF-----YRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEF 207 (374)
T ss_dssp EEEEEESCT-----TSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhh-----hcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 222211110 0112567899999999887663310 110 110 01123456
Q ss_pred HHHHHHhccCCCEEEEEEec
Q 025715 150 LTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 150 l~~a~~~Lk~gG~lv~k~~~ 169 (249)
|..-.+.|+|||.||+.+..
T Consensus 208 L~~ra~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 208 LRARAAEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEec
Confidence 88888999999999998773
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.001 Score=59.52 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C----------CCCceEeecC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P----------IEGVIQVQGD 101 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~----------~~~v~~~~gD 101 (249)
+..+||=+|.|-|+....+++. + ..+|+.|||++.. . .++++.+.+|
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~-------------~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~D 270 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-K-------------PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIED 270 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-C-------------CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-C-------------CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHH
Confidence 4579999999999999888764 3 2689999999731 0 1246667777
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCC-CCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCC---HHHH
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDV-TGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKD---TSLL 176 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~-~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~---~~~l 176 (249)
.... ++...+ ..++||+|+.|..... .+.. .. ....| ....+..+.+.|+|||.+++..-.... ...+
T Consensus 271 a~~f--l~~~~~--~~~~yDvIIvDl~D~~~s~~p--~g-~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i 343 (381)
T 3c6k_A 271 CIPV--LKRYAK--EGREFDYVINDLTAVPISTSP--EE-DSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLY 343 (381)
T ss_dssp HHHH--HHHHHH--HTCCEEEEEEECCSSCCCCC-------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHH
T ss_pred HHHH--HHhhhh--ccCceeEEEECCCCCcccCcc--cC-cchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHH
Confidence 6432 111111 2357999999974211 1111 11 01122 356688899999999999975433322 2345
Q ss_pred HHHHhcCCCeeEEec
Q 025715 177 YCQLKLFFPVVTFAK 191 (249)
Q Consensus 177 ~~~l~~~f~~v~~~k 191 (249)
...+++.|..|.+..
T Consensus 344 ~~tl~~vF~~v~~~~ 358 (381)
T 3c6k_A 344 EEQLGRLYCPVEFSK 358 (381)
T ss_dssp HHHHTTSSSCEEEEE
T ss_pred HHHHHHhCCcceEee
Confidence 566777888876543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=68.20 Aligned_cols=125 Identities=13% Similarity=0.054 Sum_probs=67.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|+|-|||+|+|...+.+++....+.....+......++|+|+++.. .+....+..+|....+.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~- 294 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPL- 294 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCG-
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCch-
Confidence 467899999999999999887776421100000000012469999998732 12333456677654321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCC----CcCH-HHHHHHHHHHHHHHHHhcc-------CCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLH----DMDE-FVQSQLILAGLTVVTHVLK-------EGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~----~~~~-~~~~~l~~~~l~~a~~~Lk-------~gG~lv~k~~ 168 (249)
.......+||+|++|+++...... +... ..........+..+.+.|| +||++.+-+.
T Consensus 295 ---~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 295 ---REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ---GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ---hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 011123579999999876432110 0000 0000011223455556665 7999998654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00036 Score=57.29 Aligned_cols=109 Identities=15% Similarity=0.049 Sum_probs=64.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C---CCCceEeecCCCCh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P---IEGVIQVQGDITNA 105 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~---~~~v~~~~gDi~~~ 105 (249)
++..+||++|| |. |..+..++. +++|+++|.++.. . ..+++++.||+...
T Consensus 29 ~~a~~VLEiGt--Gy-STl~lA~~~-------------~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~ 92 (202)
T 3cvo_A 29 EEAEVILEYGS--GG-STVVAAELP-------------GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT 92 (202)
T ss_dssp HHCSEEEEESC--SH-HHHHHHTST-------------TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred hCCCEEEEECc--hH-HHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence 45689999998 44 444433331 4899999998731 2 23577888996542
Q ss_pred ------------hhHHHHHHh---c-CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE-e
Q 025715 106 ------------RTAEVVIRH---F-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI-F 168 (249)
Q Consensus 106 ------------~~~~~i~~~---~-~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~-~ 168 (249)
+....+... . ..++||+|+.|+... . ..+..+.+.|+|||.+++-- .
T Consensus 93 ~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~---------~~~~~~l~~l~~GG~Iv~DNv~ 156 (202)
T 3cvo_A 93 GDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------V---------GCALATAFSITRPVTLLFDDYS 156 (202)
T ss_dssp CGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH-------H---------HHHHHHHHHCSSCEEEEETTGG
T ss_pred hcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc-------h---------hHHHHHHHhcCCCeEEEEeCCc
Confidence 111111111 1 236899999998421 0 12444678999999987631 2
Q ss_pred cCCCHHHHHHHH
Q 025715 169 RGKDTSLLYCQL 180 (249)
Q Consensus 169 ~~~~~~~l~~~l 180 (249)
..+....+..++
T Consensus 157 ~r~~y~~v~~~~ 168 (202)
T 3cvo_A 157 QRRWQHQVEEFL 168 (202)
T ss_dssp GCSSGGGGHHHH
T ss_pred CCcchHHHHHHH
Confidence 233444554443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.43 E-value=6.8e-05 Score=63.50 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=50.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceEeecCCCChhhHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
.++.+|||+|||+|.++..++++ + ..+|+|+|+++.. ...+++++++|+.+.+..
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~-~-------------~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~---- 91 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQH-P-------------LKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFC---- 91 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTS-C-------------CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGG----
T ss_pred CCcCEEEEEcCchHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChh----
Confidence 46789999999999999999875 2 3699999999721 224688999999875421
Q ss_pred HhcCCCcccEEEeCCCC
Q 025715 113 RHFDGCKADLVVCDGAP 129 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~ 129 (249)
.+. ..+ .|++|.+.
T Consensus 92 -~~~-~~~-~vv~NlPy 105 (249)
T 3ftd_A 92 -SLG-KEL-KVVGNLPY 105 (249)
T ss_dssp -GSC-SSE-EEEEECCT
T ss_pred -Hcc-CCc-EEEEECch
Confidence 111 133 78888754
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00032 Score=61.77 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=56.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----C--CCCceEeecCCCChhhHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P--IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~--~~~v~~~~gDi~~~~~~~~i~ 112 (249)
++|..+||.++|.|+.|..++++++ +.++|+|+|+++.+ . ..++++++++..+... +.
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg------------~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~---~L 120 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLG------------EEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGE---YV 120 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCC------------TTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHH---HH
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHH---HH
Confidence 6889999999999999999999876 57899999999842 1 2468889998877432 22
Q ss_pred HhcCC-CcccEEEeCC
Q 025715 113 RHFDG-CKADLVVCDG 127 (249)
Q Consensus 113 ~~~~~-~~~DlVlsD~ 127 (249)
....- +++|.|+.|.
T Consensus 121 ~~~g~~~~vDgILfDL 136 (347)
T 3tka_A 121 AERDLIGKIDGILLDL 136 (347)
T ss_dssp HHTTCTTCEEEEEEEC
T ss_pred HhcCCCCcccEEEECC
Confidence 22221 3699999995
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=59.52 Aligned_cols=123 Identities=13% Similarity=-0.009 Sum_probs=67.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHh----cCCCCCCCCCCCCCCCeEEEecCCCCC------CC--------------CCceE
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKL----YLPAKLSPDSREGDLPLIVAIDLQPMA------PI--------------EGVIQ 97 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~----~~~~~~~~~~~~~~~~~vvavDi~~~~------~~--------------~~v~~ 97 (249)
..+|+||||++|..|..+...+ .............+.-.|+..|+-... .+ .+.-+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 5899999999999999776642 110000000001244678888876321 00 12234
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCC------------cC--------HHHH--------HHHHHHH
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD------------MD--------EFVQ--------SQLILAG 149 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~------------~~--------~~~~--------~~l~~~~ 149 (249)
+.|.-.+. ..+.|+.+++|+|+|+.+..|..... .. .... .+-....
T Consensus 133 ~~gvpgSF-----y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F 207 (384)
T 2efj_A 133 IGAMPGSF-----YSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF 207 (384)
T ss_dssp EEECCSCT-----TSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhh-----hhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 44433221 01135678999999998876632210 00 0101 1122445
Q ss_pred HHHHHHhccCCCEEEEEEec
Q 025715 150 LTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 150 l~~a~~~Lk~gG~lv~k~~~ 169 (249)
|..-.+.|+|||.||+.+..
T Consensus 208 L~~Ra~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 208 LRIHSEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHhccCCeEEEEEec
Confidence 77778999999999997763
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00043 Score=61.70 Aligned_cols=118 Identities=13% Similarity=0.032 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHH--------hcCCCCCCCCCCCCCCCeEEEecCCCCC------CCC------CceEeec
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRK--------LYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE------GVIQVQG 100 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~--------~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~------~v~~~~g 100 (249)
...+|+||||++|..|..+... .... +. +..+.-.|+..|+-... .++ +.-++.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~----~~-~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~g 125 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKM----GR-ENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFING 125 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSS----SC-SSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEE
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhc----CC-CCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEe
Confidence 4578999999999888754322 1100 00 01245688899986532 222 2234444
Q ss_pred CCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCC-----CC---------------cCH--HHHHHHHHHHHHHHHHhcc
Q 025715 101 DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL-----HD---------------MDE--FVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 101 Di~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~-----~~---------------~~~--~~~~~l~~~~l~~a~~~Lk 158 (249)
.-.+. ...-|+.+++|+|+|+.+..|... .+ .+. ....+-....|..-.+.|+
T Consensus 126 vpgSF-----y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~ 200 (359)
T 1m6e_X 126 VPGSF-----YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV 200 (359)
T ss_dssp EESCS-----SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred cchhh-----hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32221 001256789999999987665321 00 001 1112234556788889999
Q ss_pred CCCEEEEEEe
Q 025715 159 EGGKFIAKIF 168 (249)
Q Consensus 159 ~gG~lv~k~~ 168 (249)
|||.||+.+.
T Consensus 201 pGG~mvl~~~ 210 (359)
T 1m6e_X 201 PGGRMVLTIL 210 (359)
T ss_dssp TTCEEEEEEE
T ss_pred CCceEEEEEe
Confidence 9999999776
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00094 Score=59.88 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=61.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH-hc
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR-HF 115 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~-~~ 115 (249)
.+|+||+||.|+++..+.+. + --.|.++|+++.+ -.++..++++||.+.... .+.. .+
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G-------------~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~-~~~~~~~ 67 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-G-------------FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAE-IIKGFFK 67 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-T-------------CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHH-HHHHHHC
T ss_pred CeEEEEccCcCHHHHHHHHC-C-------------CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHH-HHHhhcc
Confidence 58999999999999888765 3 1357799999854 145677889999876432 2221 22
Q ss_pred CCCcccEEEeCCCCCC---CCCCCcCHHHHHHHHHHHHHHHHHhccCC
Q 025715 116 DGCKADLVVCDGAPDV---TGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~---~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g 160 (249)
....+|+|+.+++++. .|.+..+..+ ..|....++. .+.++|.
T Consensus 68 ~~~~~D~i~ggpPCQ~fS~ag~~~~~d~r-~~L~~~~~~~-v~~~~P~ 113 (376)
T 3g7u_A 68 NDMPIDGIIGGPPCQGFSSIGKGNPDDSR-NQLYMHFYRL-VSELQPL 113 (376)
T ss_dssp SCCCCCEEEECCCCCTTC-------CHHH-HHHHHHHHHH-HHHHCCS
T ss_pred cCCCeeEEEecCCCCCcccccCCCCCCch-HHHHHHHHHH-HHHhCCC
Confidence 4468999999875432 2322222222 2344444443 4557885
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0029 Score=54.51 Aligned_cols=98 Identities=15% Similarity=0.047 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------------------------
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------------------- 90 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------------------- 90 (249)
...||++|++.|.-+..++..+.... .++++|+++|...-.
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g--------~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar 178 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHD--------VRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVR 178 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTT--------CCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHH
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcC--------CCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHH
Confidence 45999999999999988877653100 025789999975310
Q ss_pred ------CC--CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCE
Q 025715 91 ------PI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 91 ------~~--~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~ 162 (249)
.+ ++++++.||+.+ + ...+..+++|+|..|+.. .+. ....++.+...|+|||.
T Consensus 179 ~n~~~~gl~~~~I~li~Gda~e--t----L~~~~~~~~d~vfIDaD~-------y~~------~~~~Le~~~p~L~pGGi 239 (282)
T 2wk1_A 179 RNFRNYDLLDEQVRFLPGWFKD--T----LPTAPIDTLAVLRMDGDL-------YES------TWDTLTNLYPKVSVGGY 239 (282)
T ss_dssp HHHHHTTCCSTTEEEEESCHHH--H----STTCCCCCEEEEEECCCS-------HHH------HHHHHHHHGGGEEEEEE
T ss_pred HHHHHcCCCcCceEEEEeCHHH--H----HhhCCCCCEEEEEEcCCc-------ccc------HHHHHHHHHhhcCCCEE
Confidence 11 457788888743 1 112344689999999721 011 23567888999999998
Q ss_pred EEEE
Q 025715 163 FIAK 166 (249)
Q Consensus 163 lv~k 166 (249)
+++-
T Consensus 240 Iv~D 243 (282)
T 2wk1_A 240 VIVD 243 (282)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8863
|
| >3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0083 Score=59.83 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=71.2
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe-cCC-CHHHHHHHHhcCCCeeEEecC
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RGK-DTSLLYCQLKLFFPVVTFAKP 192 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~-~~~-~~~~l~~~l~~~f~~v~~~kP 192 (249)
++.+.|.+|.||.--...|. .|-..+.+...+++..++++..+||.+|+|+- ... -...+...+..+|..+.+.||
T Consensus 570 ~pTGtf~fVYSDVDQV~d~~--~Dl~As~r~~~~~l~~~l~~ts~GG~~v~KiNFPT~~vw~~if~~~~~~~~~~~i~KP 647 (1299)
T 3iyl_W 570 VPTGTFGLVYADLDQVEDAG--TDMPAANRAAIAMLGTALQMTTAGGVSVLKVNFPTRAFWTQVFNLYATHATTLHLVKP 647 (1299)
T ss_dssp CCCCCEEEEEECCCCC-------CCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCTTHHHHHHHHTTTTCSCEEEEEC
T ss_pred CCCCceEEEEecchhhccCC--cchhhhhHHHHHHHHHHHHhhcCCceEEEEEcCCchHHHHHHHHHhcchhheeeeecc
Confidence 56789999999963222222 23234556677889999999999999999985 332 255677777778999999999
Q ss_pred CCCCCCCceEEEEEeeccCCCCCC
Q 025715 193 KSSRNSSIEAFAVCENYFPPEGFN 216 (249)
Q Consensus 193 ~~sr~~s~E~y~v~~g~~~~~~~~ 216 (249)
.-.+ |.|+|++.-|.......-
T Consensus 648 li~N--nvEvf~v~~~r~~~~~l~ 669 (1299)
T 3iyl_W 648 TIVN--SSEVFLVFGGRQSNGALR 669 (1299)
T ss_dssp CSSS--CCCEEEEESCCCTTCCCC
T ss_pred eeec--ceEEEEEEeeecccCCCC
Confidence 8764 689999988877555444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0075 Score=51.93 Aligned_cols=70 Identities=14% Similarity=0.013 Sum_probs=43.3
Q ss_pred CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCc---C------HHHHHHHHHHHHHHHHHhccCCCEE
Q 025715 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDM---D------EFVQSQLILAGLTVVTHVLKEGGKF 163 (249)
Q Consensus 93 ~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~---~------~~~~~~l~~~~l~~a~~~Lk~gG~l 163 (249)
..+++++||..+. .+.+++++||+|++|++......... + ...-...+...+..+.++|||||.+
T Consensus 20 ~~~~i~~gD~~~~------l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l 93 (297)
T 2zig_A 20 GVHRLHVGDAREV------LASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRL 93 (297)
T ss_dssp -CEEEEESCHHHH------HTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cCCEEEECcHHHH------HhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 3567889998652 23356679999999986532211100 0 0111223456788999999999999
Q ss_pred EEEEe
Q 025715 164 IAKIF 168 (249)
Q Consensus 164 v~k~~ 168 (249)
++.+-
T Consensus 94 ~i~~~ 98 (297)
T 2zig_A 94 VIVVG 98 (297)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88643
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0037 Score=55.18 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=48.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+|+||+||.|+++..+..... .-..|+++|+++.+. .++..++.+|+.+.... .+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~------------~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~-~~~---- 65 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCI------------PAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLE-EFD---- 65 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTC------------SEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHH-HHH----
T ss_pred CeEEEeCcCccHHHHHHHHCCC------------CceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHh-HcC----
Confidence 5899999999999998876521 013689999998531 34555678999875421 121
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
...+|+|+.++++
T Consensus 66 ~~~~D~l~~gpPC 78 (343)
T 1g55_A 66 RLSFDMILMSPPC 78 (343)
T ss_dssp HHCCSEEEECCC-
T ss_pred cCCcCEEEEcCCC
Confidence 1269999998764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.023 Score=50.40 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=43.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~ 107 (249)
++..||++|.|+|++|..++++.. ..+|+++++.+.. ..++++.+.+|+.+.+.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~-------------~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~ 119 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYC-------------PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWST 119 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-------------CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCC-------------CCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhh
Confidence 468999999999999999998753 2589999998621 23578999999988753
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.013 Score=51.25 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=46.1
Q ss_pred CceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCC--CC-CcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 94 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG--LH-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 94 ~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g--~~-~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
...+++||..+. .+.+++++||+|++|++..... .+ +.....-.......+..+.++|+|||.+++.+-.
T Consensus 14 ~~~ii~gD~~~~------l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 14 NGSMYIGDSLEL------LESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SEEEEESCHHHH------GGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CceEEeCcHHHH------HhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 456788887542 2345678999999998754331 11 1112222344567888899999999999986543
|
| >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U | Back alignment and structure |
|---|
Probab=95.71 E-value=0.025 Score=56.19 Aligned_cols=112 Identities=21% Similarity=0.193 Sum_probs=80.8
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC--CHH
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK--DTS 174 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~--~~~ 174 (249)
..+|-|.|.. ..++.+.|-+|.||.--...|. .|-..+.+...+.+..++++..+||.+|+|+--+- -..
T Consensus 554 V~~G~I~D~~------~p~pTGtf~fVYSDvDQV~dgg--~Dl~Aasr~~~~~l~~~l~~tt~GG~~VvKiNFPT~~~W~ 625 (1289)
T 1ej6_A 554 VARGAIVDLA------RPFPSGDYQFVYSDVDQVVDGH--DDLSISSGLVESLLSSCMHATAPGGSFVVKINFPTRPVWH 625 (1289)
T ss_dssp CSSSBCCCTT------SCCSCCCEEEEEECCCCCCSSS--TTHHHHHHHHHHHHHHHHHHEEEEEEEEEEESSCCHHHHH
T ss_pred eccceeeeee------ccCCCcceEEEEechhhhhcCC--CcchhhHHHHHHHHHHHHHhhccCceEEEEEcCCChHHHH
Confidence 3456555543 2356789999999974323333 34445566778899999999999999999985332 234
Q ss_pred HHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccCCCCCCch
Q 025715 175 LLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK 218 (249)
Q Consensus 175 ~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~~~~~~~~ 218 (249)
.+......+|...+++||.-.+ |.|.|+++-|.....+..++
T Consensus 626 ~lf~~~~~~~~s~~lvKP~IvN--nvEvflv~~~r~~~g~l~~t 667 (1289)
T 1ej6_A 626 YIEQKILPNITSYMLIKPFVTN--NVELFFVAFGVHQHSSLTWT 667 (1289)
T ss_dssp HHHHHTGGGEEEEEEEEEESSS--SCCEEEEEEEESCCCCCCBC
T ss_pred HHHHhhccccceeeeecceeec--ceEEEEEEEeeecCCCCCCc
Confidence 5555556678999999997754 68999999999987777754
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.14 Score=40.00 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=67.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
.-|||||-|.|---.++.+.++ +..|+++|..-.. ..+.-.+++||+.+ ++......|+ .
T Consensus 42 GpVlElGLGNGRTydHLRe~~P-------------~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~--tL~~~~~r~g-~ 105 (174)
T 3iht_A 42 GPVYELGLGNGRTYHHLRQHVQ-------------GREIYVFERAVASHPDSTPPEAQLILGDIRE--TLPATLERFG-A 105 (174)
T ss_dssp SCEEEECCTTCHHHHHHHHHCC-------------SSCEEEEESSCCCCGGGCCCGGGEEESCHHH--HHHHHHHHHC-S
T ss_pred CceEEecCCCChhHHHHHHhCC-------------CCcEEEEEeeeccCCCCCCchHheecccHHH--HHHHHHHhcC-C
Confidence 4899999999999999999985 6799999986432 12334578999865 3333334454 6
Q ss_pred cccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 119 ~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.-++.+|... |.+..+. .....+--.+-.+|.|||.+|.
T Consensus 106 ~a~LaHaD~G~---g~~~~d~----a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 106 TASLVHADLGG---HNREKND----RFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp CEEEEEECCCC---SCHHHHH----HHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceEEEEeecCC---CCcchhH----HHHHhhhHHHHHHhcCCcEEEe
Confidence 89999999742 3222221 1112223345679999998775
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.5 Score=38.66 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~ 120 (249)
.++++|=.|+ .|++...+++++... ....|+..|.++......+.++.+|+++.+....+.+.+..+.+
T Consensus 3 ~~k~vlITGa-s~gIG~~~a~~l~~~----------~g~~v~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~i 71 (244)
T 4e4y_A 3 AMANYLVTGG-SKGIGKAVVELLLQN----------KNHTVINIDIQQSFSAENLKFIKADLTKQQDITNVLDIIKNVSF 71 (244)
T ss_dssp CCEEEEEETT-TSHHHHHHHHHHTTS----------TTEEEEEEESSCCCCCTTEEEEECCTTCHHHHHHHHHHTTTCCE
T ss_pred CCCeEEEeCC-CChHHHHHHHHHHhc----------CCcEEEEeccccccccccceEEecCcCCHHHHHHHHHHHHhCCC
Confidence 3456776674 577888888777521 13578888988764456778899999998877776665655689
Q ss_pred cEEEeCCCCCCC-CCCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 121 DLVVCDGAPDVT-GLHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 121 DlVlsD~~~~~~-g~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
|+++.+...... ...+.+... ..+. ....++.+...++++|+++..
T Consensus 72 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~ 125 (244)
T 4e4y_A 72 DGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFN 125 (244)
T ss_dssp EEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEE
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEE
Confidence 999999754321 112222211 1111 123344555666778887763
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.024 Score=50.65 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=58.9
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhh-HHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNART-AEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~-~~~i~ 112 (249)
+++|.+||-+|+|+ |.....+++..+ ..+|+++|.++.+. --|...+ |..+.+. .+.+.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~ 247 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLG-------------AACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQID 247 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHH
Confidence 47899999999866 555556666665 23899999886421 1244333 3333222 33344
Q ss_pred HhcCCCcccEEEeCCCCCCCCC----CCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGL----HDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~----~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+...+..+|+|+--..-...+. ...+. ...+..+.++|++||++++
T Consensus 248 ~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 248 QILGKPEVDCGVDAVGFEAHGLGDEANTETP-------NGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp HHHSSSCEEEEEECSCTTCBCSGGGTTSBCT-------THHHHHHHHHEEEEEEEEC
T ss_pred HHhCCCCCCEEEECCCCcccccccccccccc-------HHHHHHHHHHHhcCCEEEE
Confidence 3334447999985321110000 00000 0246678899999999886
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.015 Score=49.96 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=29.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
.+|..|||++||+|..+.++++. + .+++|+|+++.
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~-g--------------~~~~g~e~~~~ 268 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW-G--------------RRALGVELVPR 268 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-T--------------CEEEEEESCHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-C--------------CeEEEEeCCHH
Confidence 57899999999999999887753 3 58999999983
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.047 Score=45.89 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=42.8
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCC-C-Cc-CHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL-H-DM-DEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~-~-~~-~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.++||..+ ..+.+.+++||+|+.|++...... + +. ....-.......+..+.++|+|||.+++.+
T Consensus 6 ~l~~gD~~~------~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 6 KIHQMNCFD------FLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SEEECCHHH------HHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHH------HHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467888654 223456679999999987543211 1 01 222223455677888899999999998854
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.047 Score=47.14 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=80.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCe-EEEecCCCCC------CCCCceEeecCCCChhhHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMA------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+.+.+|+||.||.||++..+.+. +. ... |.++|+++.+ -.++...+.+||++... ..+.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~------------~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~-~~i~ 79 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GI------------QVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQ-KHIQ 79 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TB------------CEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCH-HHHH
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CC------------ccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccH-HHhc
Confidence 45679999999999999887653 31 122 6899998853 13455577899987643 2222
Q ss_pred HhcCCCcccEEEeCCCCC---CCC-CC-CcCHHHHHHHHHHHHHHHHHhccCC-C-----EEEEEEecCCC---HHHHHH
Q 025715 113 RHFDGCKADLVVCDGAPD---VTG-LH-DMDEFVQSQLILAGLTVVTHVLKEG-G-----KFIAKIFRGKD---TSLLYC 178 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~---~~g-~~-~~~~~~~~~l~~~~l~~a~~~Lk~g-G-----~lv~k~~~~~~---~~~l~~ 178 (249)
+ + ..+|+++..++++ ..| .+ ..+..+ ..|....++. .+.++|. | .+++.=-.+.. ...+..
T Consensus 80 ~-~--~~~Dll~ggpPCQ~fS~ag~~r~g~~d~r-~~L~~~~~ri-i~~~~P~~~~~~P~~~l~ENV~gl~~~~~~~~~~ 154 (295)
T 2qrv_A 80 E-W--GPFDLVIGGSPCNDLSIVNPARKGLYEGT-GRLFFEFYRL-LHDARPKEGDDRPFFWLFENVVAMGVSDKRDISR 154 (295)
T ss_dssp H-T--CCCSEEEECCCCGGGBTTCTTCCTTTSTT-TTHHHHHHHH-HHHHSCCTTCCCCCEEEEEEESSBCHHHHHHHHH
T ss_pred c-c--CCcCEEEecCCCccccccCcccccccccc-chhHHHHHHH-HHHhCcccccCCccEEEEEcCcchhhcCccHHHH
Confidence 2 1 4699999876543 223 11 111111 1233334443 4566776 3 56654222211 123545
Q ss_pred HHhcCCCeeEEecCCCCCCCCceEEEEE
Q 025715 179 QLKLFFPVVTFAKPKSSRNSSIEAFAVC 206 (249)
Q Consensus 179 ~l~~~f~~v~~~kP~~sr~~s~E~y~v~ 206 (249)
.++..+..+... -. . +.++++++++
T Consensus 155 ~l~~~~~vl~a~-~~-~-PQ~R~R~~i~ 179 (295)
T 2qrv_A 155 FLESNPVMIDAK-EV-S-AAHRARYFWG 179 (295)
T ss_dssp HHTSCCCCEEGG-GT-S-SBCCEEEEEE
T ss_pred HHhcCcEEeecc-eE-C-CccCcEEEEE
Confidence 555444433322 22 3 7778988873
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.065 Score=42.58 Aligned_cols=96 Identities=21% Similarity=0.170 Sum_probs=56.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+++|++||-.|++ |+....+.+.... ...+|+++|.++... -.+... ..|..+.+..+.+.+.
T Consensus 36 ~~~g~~vlV~Ga~-ggiG~~~~~~~~~-----------~G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 36 LSPGERVLIHSAT-GGVGMAAVSIAKM-----------IGARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFADEILEL 102 (198)
T ss_dssp CCTTCEEEETTTT-SHHHHHHHHHHHH-----------HTCEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHHHHHHH
T ss_pred CCCCCEEEEeeCC-ChHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHcCCCE-EeeCCcHHHHHHHHHH
Confidence 4688999999853 4444444332210 126899999875321 112221 1255554444555544
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.....+|+|+.... . ..+..+.+.|++||++++
T Consensus 103 ~~~~~~D~vi~~~g-----~-------------~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 103 TDGYGVDVVLNSLA-----G-------------EAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp TTTCCEEEEEECCC-----T-------------HHHHHHHHTEEEEEEEEE
T ss_pred hCCCCCeEEEECCc-----h-------------HHHHHHHHHhccCCEEEE
Confidence 44457999996532 1 135667899999999987
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.064 Score=47.22 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=56.8
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||-+|+|+ |.....+++..+ ..+|+++|.++.+. . -+.. .+ |..+.+..+.+.
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~~~ 252 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCG-------------ASIIIAVDIVESRLELAKQLGATHVI--NSKTQDPVAAIK 252 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-------------CSEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCeEEEECCCHHHHHHHHHcCCCEEe--cCCccCHHHHHH
Confidence 36899999999765 445555666654 13799999876431 0 1221 22 222222333444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+... +.+|+|+-. .|. ...+..+.++|++||++++-
T Consensus 253 ~~~~-gg~D~vid~-----~g~------------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 253 EITD-GGVNFALES-----TGS------------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HHTT-SCEEEEEEC-----SCC------------HHHHHHHHHTEEEEEEEEEC
T ss_pred HhcC-CCCcEEEEC-----CCC------------HHHHHHHHHHHhcCCEEEEe
Confidence 4333 379999853 221 12467788999999999873
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.074 Score=46.16 Aligned_cols=121 Identities=18% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCChHHHHHHH---HhcCCCCCCCCCCCCCCCeEEEecCCCCCCC------------------C-----C
Q 025715 41 GVKRVVDLCAAPGSWSQVLSR---KLYLPAKLSPDSREGDLPLIVAIDLQPMAPI------------------E-----G 94 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~---~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~------------------~-----~ 94 (249)
+..+|||+|-|+|--.....+ ..... ...+++++|..+.... + +
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~----------~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~ 165 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPK----------LRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGER 165 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTT----------CEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSS
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCC----------cceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCc
Confidence 346899999999986544332 22210 1235678887654210 1 1
Q ss_pred --ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 95 --VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 95 --v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
+++..||+.+ ....+...++|+|..|+. |.. |.+-+. ...+....++++|||+|+. +...
T Consensus 166 v~L~l~~GDa~~------~l~~l~~~~~Da~flDgFsP~k----NPeLWs-----~e~f~~l~~~~~pgg~laT--Ytaa 228 (308)
T 3vyw_A 166 LSLKVLLGDARK------RIKEVENFKADAVFHDAFSPYK----NPELWT-----LDFLSLIKERIDEKGYWVS--YSSS 228 (308)
T ss_dssp EEEEEEESCHHH------HGGGCCSCCEEEEEECCSCTTT----SGGGGS-----HHHHHHHHTTEEEEEEEEE--SCCC
T ss_pred EEEEEEechHHH------HHhhhcccceeEEEeCCCCccc----CcccCC-----HHHHHHHHHHhCCCcEEEE--EeCc
Confidence 1234555532 222345557999999983 332 222111 2467888999999999884 4332
Q ss_pred CHHHHHHHHhcC-CCeeEEec
Q 025715 172 DTSLLYCQLKLF-FPVVTFAK 191 (249)
Q Consensus 172 ~~~~l~~~l~~~-f~~v~~~k 191 (249)
..+...|... |. |.-.+
T Consensus 229 --g~VRR~L~~aGF~-V~k~~ 246 (308)
T 3vyw_A 229 --LSVRKSLLTLGFK-VGSSR 246 (308)
T ss_dssp --HHHHHHHHHTTCE-EEEEE
T ss_pred --HHHHHHHHHCCCE-EEecC
Confidence 2344445543 65 44443
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.025 Score=49.71 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=47.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+|+||+||.||++..+.+. +. .--.|.|+|+++.+. .++...+.+||.+... ..+.
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~-----------~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~-~~~~---- 66 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GL-----------DGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTP-QVIK---- 66 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TC-----------SEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCH-HHHH----
T ss_pred CEEEEECcCccHHHHHHHHc-CC-----------CceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCH-HHhc----
Confidence 48999999999999888654 20 012577999998541 3455567899987643 1222
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
...+|+++..+++
T Consensus 67 ~~~~D~l~ggpPC 79 (333)
T 4h0n_A 67 KWNVDTILMSPPC 79 (333)
T ss_dssp HTTCCEEEECCCC
T ss_pred cCCCCEEEecCCC
Confidence 2369999987644
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.091 Score=45.99 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=55.9
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCce-EeecCCC---ChhhHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDIT---NARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~-~~~gDi~---~~~~~~ 109 (249)
+++|.+||-.|+|+ |.....+++.++ ..+|+++|.++.+. --|.. .+ |.. +.+..+
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~~~ 233 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMG-------------AAQVVVTDLSATRLSKAKEIGADLVL--QISKESPQEIAR 233 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCSEEE--ECSSCCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHhCCCEEE--cCcccccchHHH
Confidence 46899999999754 344444555544 13899999876421 01221 22 222 123334
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+... +.+|+|+-. .|. . ..+..+.++|++||++++-
T Consensus 234 ~i~~~~~-~g~D~vid~-----~g~----~--------~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 234 KVEGQLG-CKPEVTIEC-----TGA----E--------ASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHHHHT-SCCSEEEEC-----SCC----H--------HHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHhC-CCCCEEEEC-----CCC----h--------HHHHHHHHHhcCCCEEEEE
Confidence 4444333 579999853 221 1 2456778999999999873
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.19 Score=43.89 Aligned_cols=98 Identities=18% Similarity=0.225 Sum_probs=57.1
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CC-CCceEeecCCCC-hhhHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PI-EGVIQVQGDITN-ARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~-~~v~~~~gDi~~-~~~~~~ 110 (249)
+++|++||=.|+|+ |.....+++..+ ...|+++|.++.+ .+ +.+.....|-.+ .+..+.
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 243 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAG-------------ACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKK 243 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTT-------------CCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHH
Confidence 47899999998743 333334455544 1249999987632 11 122122222222 333444
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+...+..+|+|+-- .|. . ..+..+.++|++||++++-
T Consensus 244 v~~~t~g~g~Dvvid~-----~g~----~--------~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 244 IVESFGGIEPAVALEC-----TGV----E--------SSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HHHHTSSCCCSEEEEC-----SCC----H--------HHHHHHHHHSCTTCEEEEC
T ss_pred HHHHhCCCCCCEEEEC-----CCC----h--------HHHHHHHHHhcCCCEEEEE
Confidence 5554555689999852 221 1 2466788999999999974
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.24 E-value=0.031 Score=48.94 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=45.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
+.+|+||+||.|+++..+... + -..|.++|+++.+. .+.. ..+|+++... +.+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G-------------~~~v~~~e~d~~a~~t~~~N~~~~--~~~Di~~~~~-----~~~ 69 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-G-------------AECVYSNEWDKYAQEVYEMNFGEK--PEGDITQVNE-----KTI 69 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-T-------------CEEEEEECCCHHHHHHHHHHHSCC--CBSCGGGSCG-----GGS
T ss_pred CCcEEEECCCcCHHHHHHHHC-C-------------CeEEEEEeCCHHHHHHHHHHcCCC--CcCCHHHcCH-----hhC
Confidence 479999999999999888754 3 14688999998531 1222 2688876432 122
Q ss_pred CCCcccEEEeCCCCC
Q 025715 116 DGCKADLVVCDGAPD 130 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~ 130 (249)
..+|+|+.+++++
T Consensus 70 --~~~D~l~~gpPCQ 82 (327)
T 2c7p_A 70 --PDHDILCAGFPCQ 82 (327)
T ss_dssp --CCCSEEEEECCCT
T ss_pred --CCCCEEEECCCCC
Confidence 2599999987543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.064 Score=46.40 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=44.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
++||||.||.||++..+.+. + --.|.|+|+++.+. .+ -..+.+||++... +.+
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G-------------~~~v~a~e~d~~a~~ty~~N~~-~~~~~~DI~~i~~-----~~~- 59 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-G-------------FRIICANEYDKSIWKTYESNHS-AKLIKGDISKISS-----DEF- 59 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-T-------------CEEEEEEECCTTTHHHHHHHCC-SEEEESCGGGCCG-----GGS-
T ss_pred CeEEEeCcCccHHHHHHHHC-C-------------CEEEEEEeCCHHHHHHHHHHCC-CCcccCChhhCCH-----hhC-
Confidence 58999999999999887643 3 13567999998752 22 3567899987542 123
Q ss_pred CCcccEEEeCCC
Q 025715 117 GCKADLVVCDGA 128 (249)
Q Consensus 117 ~~~~DlVlsD~~ 128 (249)
..+|+++.-++
T Consensus 60 -~~~D~l~ggpP 70 (331)
T 3ubt_Y 60 -PKCDGIIGGPP 70 (331)
T ss_dssp -CCCSEEECCCC
T ss_pred -CcccEEEecCC
Confidence 36999986543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.38 Score=42.35 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=56.4
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCce-EeecCCC--ChhhHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDIT--NARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~-~~~gDi~--~~~~~~~ 110 (249)
+++|.+||=+|+|+ |.....+++..+ ..+|+++|.++.+. --|.. .+ |.. +.+..+.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~~~ 255 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAG-------------ASRIIGIDIDSKKYETAKKFGVNEFV--NPKDHDKPIQEV 255 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHT-------------CSCEEEECSCTTHHHHHHTTTCCEEE--CGGGCSSCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCeEEEEcCCHHHHHHHHHcCCcEEE--ccccCchhHHHH
Confidence 46899999999753 333444555554 23899999887541 11221 12 222 2223334
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
+.+... +.+|+|+-- .|. ...+..+.++|++| |++++-
T Consensus 256 i~~~~~-gg~D~vid~-----~g~------------~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 256 IVDLTD-GGVDYSFEC-----IGN------------VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHHHTT-SCBSEEEEC-----SCC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhcC-CCCCEEEEC-----CCC------------HHHHHHHHHHhhccCCEEEEE
Confidence 444333 489999852 221 12567788999997 999873
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.04 Score=48.29 Aligned_cols=72 Identities=7% Similarity=0.132 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeE-EEecCCCCCC------CCCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLI-VAIDLQPMAP------IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~v-vavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
...+|+||+||.||++..+.+. +. .--.| .|+|+++.+. .+.. .+++||.+... ..+.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a-G~-----------~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~-~~i~- 73 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS-SI-----------NINATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISI-KQIE- 73 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS-SC-----------CCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCH-HHHH-
T ss_pred CCCEEEEECCChhHHHHHHHHc-CC-----------CceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCH-HHhc-
Confidence 4579999999999999887653 20 01245 6999998541 2333 57899988653 2222
Q ss_pred hcCCCcccEEEeCCCCC
Q 025715 114 HFDGCKADLVVCDGAPD 130 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~ 130 (249)
...+|+++..++++
T Consensus 74 ---~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 74 ---SLNCNTWFMSPPCQ 87 (327)
T ss_dssp ---HTCCCEEEECCCCT
T ss_pred ---cCCCCEEEecCCcc
Confidence 13699999866543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.11 Score=45.28 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=54.6
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCce-EeecCCCC-hhhHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDITN-ARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~-~~~gDi~~-~~~~~~i 111 (249)
+++|.+||-.|+|+ |.....+++.++ .+|+++|.++.+. --+.. .+ |..+ .+..+.+
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~~~--~~~~~~~~~~~i 229 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYG--------------AFVVCTARSPRRLEVAKNCGADVTL--VVDPAKEEESSI 229 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESCHHHHHHHHHTTCSEEE--ECCTTTSCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEcCCHHHHHHHHHhCCCEEE--cCcccccHHHHH
Confidence 46899999999643 333333444443 5799999876321 01221 22 2222 2233344
Q ss_pred HHhcC---CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFD---GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~---~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+... +..+|+|+-.. |. . ..+..+.++|+++|++++-
T Consensus 230 ~~~~~~~~g~g~D~vid~~-----g~----~--------~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 230 IERIRSAIGDLPNVTIDCS-----GN----E--------KCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHHHHSSSCCSEEEECS-----CC----H--------HHHHHHHHHSCTTCEEEEC
T ss_pred HHHhccccCCCCCEEEECC-----CC----H--------HHHHHHHHHHhcCCEEEEE
Confidence 43332 35799998532 21 1 2456778999999999873
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.085 Score=46.90 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=57.7
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChh-hHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNAR-TAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~-~~~~i~ 112 (249)
+++|.+||-.|+|+ |.+...+++.++ ..+|+++|.++.+. --|...+ |..+.+ ..+.+.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~ 247 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLG-------------AAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIA 247 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC-------------CCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHH
Confidence 47899999999654 444445555554 23799999887431 1244333 322222 233444
Q ss_pred HhcCCCcccEEEeCCCCCCCC-----CCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTG-----LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g-----~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+...+..+|+|+-.......+ ....+. ...+..+.++|++||++++
T Consensus 248 ~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 248 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAP-------ATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCT-------THHHHHHHHHEEEEEEEEE
T ss_pred HHhCCCCCCEEEECCCCcccccccccccccch-------HHHHHHHHHHHhcCCEEEE
Confidence 333445799998543211000 000000 0246678899999999986
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.09 Score=45.90 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=56.4
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCce-EeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGVI-QVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v~-~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=.|+|+ |..+..+++..+ ..+|+++|.++.+. + -|.. .+ |..+.+..+.+.
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~G-------------a~~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~v~ 228 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLG-------------AGRIFAVGSRKHCCDIALEYGATDII--NYKNGDIVEQIL 228 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT-------------CSSEEEECCCHHHHHHHHHHTCCEEE--CGGGSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CcEEEEECCCHHHHHHHHHhCCceEE--cCCCcCHHHHHH
Confidence 47899999998643 333333444433 23799999876421 0 1221 22 222333444555
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+-- .|.. ..+..+.++|++||++++-
T Consensus 229 ~~t~g~g~D~v~d~-----~g~~------------~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 229 KATDGKGVDKVVIA-----GGDV------------HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp HHTTTCCEEEEEEC-----SSCT------------THHHHHHHHEEEEEEEEEC
T ss_pred HHcCCCCCCEEEEC-----CCCh------------HHHHHHHHHHhcCCEEEEe
Confidence 54555579999852 2211 1466788999999999863
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.039 Score=48.09 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=41.9
Q ss_pred eEe-ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCC-CCCC-cCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 96 IQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT-GLHD-MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 96 ~~~-~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~-g~~~-~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
..+ +||..+. .+.+++++||+|+.|++.... +.+. .+.+ .......+..+.++|+|||.+++.+-
T Consensus 40 ~l~i~gD~l~~------L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~--~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 40 HVYDVCDCLDT------LAKLPDDSVQLIICDPPYNIMLADWDDHMDY--IGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp EEEEECCHHHH------HHTSCTTCEEEEEECCCSBCCGGGGGTCSSH--HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEECCcHHHH------HHhCccCCcCEEEECCCCCCCCCCccCHHHH--HHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 456 8887542 234667799999999865432 1111 1111 23345677788999999999998654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.47 Score=41.62 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=55.1
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCC--hhhHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITN--ARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~--~~~~~~ 110 (249)
+++|.+||=+|+|+ |.....+++.++ ..+|+++|.++.+. . -|.. .+ |..+ .+..+.
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~~~ 253 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAG-------------ASRIIGVGTHKDKFPKAIELGATECL--NPKDYDKPIYEV 253 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEECSCGGGHHHHHHTTCSEEE--CGGGCSSCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCeEEEECCCHHHHHHHHHcCCcEEE--ecccccchHHHH
Confidence 46899999999644 333334555554 13799999887531 0 1221 22 2221 122333
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
+.+... +.+|+|+-- .|. ...+..+.++|+++ |++++-
T Consensus 254 i~~~t~-gg~Dvvid~-----~g~------------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 254 ICEKTN-GGVDYAVEC-----AGR------------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHHHTT-SCBSEEEEC-----SCC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHhC-CCCCEEEEC-----CCC------------HHHHHHHHHHHhcCCCEEEEE
Confidence 443333 479999842 221 12466788999999 999863
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.18 Score=43.80 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=57.6
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCce-EeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~-~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=.|+|+ |.....+++..+ ..+|+++|.++.+. --|.. .+.. .+ +..+.+.
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g-------------~~~Vi~~~~~~~~~~~~~~lGa~~~i~~--~~-~~~~~v~ 232 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVS-------------AARVIAVDLDDDRLALAREVGADAAVKS--GA-GAADAIR 232 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC-------------CCEEEEEESCHHHHHHHHHTTCSEEEEC--ST-THHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCCEEEcC--CC-cHHHHHH
Confidence 47899999999754 444444555553 36999999887431 01221 2221 12 2334444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+-- .|. ...+..+.++|++||++++-
T Consensus 233 ~~t~g~g~d~v~d~-----~G~------------~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 233 ELTGGQGATAVFDF-----VGA------------QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp HHHGGGCEEEEEES-----SCC------------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCCeEEEEC-----CCC------------HHHHHHHHHHHhcCCEEEEE
Confidence 44444579999853 222 12567788999999999873
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.079 Score=45.41 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+..+||+-+|+|.++..+.++ ..+++.||.++.. ...+++++++|... .+.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~---------------~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~-----~L~ 151 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS---------------QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVS-----KLN 151 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT---------------TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHH-----HHH
T ss_pred CCCceeEeCCcHHHHHHHcCC---------------CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHH-----HHH
Confidence 567999999999999887762 2589999998732 12457777777543 222
Q ss_pred HhcC-CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~-~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...+ ..+||+|+.|++.... +... +. ...+. ....+.++|.+++
T Consensus 152 ~l~~~~~~fdLVfiDPPYe~k-----~~~~--~v-l~~L~-~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 152 ALLPPPEKRGLIFIDPSYERK-----EEYK--EI-PYAIK-NAYSKFSTGLYCV 196 (283)
T ss_dssp HHCSCTTSCEEEEECCCCCST-----THHH--HH-HHHHH-HHHHHCTTSEEEE
T ss_pred HhcCCCCCccEEEECCCCCCC-----cHHH--HH-HHHHH-HhCccCCCeEEEE
Confidence 2222 2479999999865321 1111 11 11222 2346788999886
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.16 Score=46.87 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C---CCceEeecCCCChhh-----
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---EGVIQVQGDITNART----- 107 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~---~~v~~~~gDi~~~~~----- 107 (249)
..+|+||+||.||++..+.+. + --.|.++|+++.+. . ++...+.+||.+...
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G-------------~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~ 153 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-G-------------GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEG 153 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-T-------------EEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTT
T ss_pred cceEEEecCCccHHHHHHHHC-C-------------CEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccc
Confidence 479999999999999887643 2 13578999988531 1 455667889876431
Q ss_pred ------HHHHHHhcCCCcccEEEeCCCC
Q 025715 108 ------AEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 108 ------~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
.+.+...+ ..+|+|+..++|
T Consensus 154 ~~~~~~~~~i~~~~--~~~Dvl~gGpPC 179 (482)
T 3me5_A 154 VSDEAAAEHIRQHI--PEHDVLLAGFPC 179 (482)
T ss_dssp SCHHHHHHHHHHHS--CCCSEEEEECCC
T ss_pred cchhhHHhhhhhcC--CCCCEEEecCCC
Confidence 11122222 368999976543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.17 Score=43.81 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=58.0
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||-.|+|+ |.....+++..+ .+|+++|.++.+. . -+.. .+ |..+.+..+.+.
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~~i--~~~~~~~~~~~~ 227 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMG--------------LRVAAVDIDDAKLNLARRLGAEVAV--NARDTDPAAWLQ 227 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTT--------------CEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCHHHHHHHHHcCCCEEE--eCCCcCHHHHHH
Confidence 47899999999876 555556666654 6999999886431 0 1221 22 333333334444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+. . +.+|+|+-.. |. ...+..+.++|++||++++-
T Consensus 228 ~~-~-g~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 228 KE-I-GGAHGVLVTA-----VS------------PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HH-H-SSEEEEEESS-----CC------------HHHHHHHHHHEEEEEEEEEC
T ss_pred Hh-C-CCCCEEEEeC-----CC------------HHHHHHHHHHhccCCEEEEe
Confidence 42 2 3799998542 11 12467788999999999863
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.54 Score=41.24 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=53.9
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCC--hhhHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITN--ARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~--~~~~~~i 111 (249)
+++|.+||=+|+|+ |.....+++.++ ..+|+++|.++.+. . -+...+ -|..+ .+..+.+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~v 258 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAG-------------ASRIIAIDINGEKFPKAKALGATDC-LNPRELDKPVQDVI 258 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCSEE-ECGGGCSSCHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCeEEEEcCCHHHHHHHHHhCCcEE-EccccccchHHHHH
Confidence 46899999999643 333333454444 13799999887541 0 122111 12221 1223334
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIA 165 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~ 165 (249)
.+... +.+|+|+-- .|. ...+..+.++|++| |++++
T Consensus 259 ~~~~~-~g~Dvvid~-----~G~------------~~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 259 TELTA-GGVDYSLDC-----AGT------------AQTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp HHHHT-SCBSEEEES-----SCC------------HHHHHHHHHTBCTTTCEEEE
T ss_pred HHHhC-CCccEEEEC-----CCC------------HHHHHHHHHHhhcCCCEEEE
Confidence 33333 479999842 221 12466788999999 99986
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.97 Score=38.05 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=39.2
Q ss_pred CCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 93 ~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+++++.|++.+ ++..+....+..++|+|..|+-. ... ....++.+...|+|||.+++--+
T Consensus 158 ~~i~li~G~~~d--TL~~~l~~~~~~~~dlv~ID~D~-------Y~~------t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 158 QRSVLVEGDVRE--TVPRYLAENPQTVIALAYFDLDL-------YEP------TKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp CSEEEEESCHHH--HHHHHHHHCTTCCEEEEEECCCC-------HHH------HHHHHHHHGGGEEEEEEEEESST
T ss_pred CcEEEEEecHHH--HHHHHHHhCCCCceEEEEEcCcc-------cch------HHHHHHHHHHHhCCCcEEEEcCC
Confidence 356777777643 44444333445679999999721 111 23467778899999999987554
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.6 Score=40.92 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=54.1
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCC--hhhHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITN--ARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~--~~~~~~i 111 (249)
+++|.+||=.|+|+ |.....+++.++ ..+|+++|.++.+. . -+...+ -|..+ .+..+.+
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~G-------------a~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~ 255 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAG-------------AKRIIAVDLNPDKFEKAKVFGATDF-VNPNDHSEPISQVL 255 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCCEE-ECGGGCSSCHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHhCCceE-EeccccchhHHHHH
Confidence 46899999999643 333333454443 12799999887431 0 132111 12221 1222333
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
.+... +.+|+|+-. .|. ...+..+.++|++| |++++-
T Consensus 256 ~~~~~-~g~D~vid~-----~g~------------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 256 SKMTN-GGVDFSLEC-----VGN------------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHT-SCBSEEEEC-----SCC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhC-CCCCEEEEC-----CCC------------HHHHHHHHHHhhcCCcEEEEE
Confidence 33333 479999853 221 02466788999999 999863
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.14 Score=45.00 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=55.7
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=.|+|+ |.....+++..+ .+|+++|.++.+. . -|.. .+ |-...+..+.+.
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~v~ 250 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATG--------------AEVIVTSSSREKLDRAFALGADHGI--NRLEEDWVERVY 250 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTT--------------CEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEecCchhHHHHHHcCCCEEE--cCCcccHHHHHH
Confidence 47899999999654 333334455444 6899999876321 0 1221 22 211122334444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+-.. |. + .+..+.++|++||++++.
T Consensus 251 ~~~~g~g~D~vid~~-----g~---~----------~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 251 ALTGDRGADHILEIA-----GG---A----------GLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp HHHTTCCEEEEEEET-----TS---S----------CHHHHHHHEEEEEEEEEE
T ss_pred HHhCCCCceEEEECC-----Ch---H----------HHHHHHHHhhcCCEEEEE
Confidence 444555799998542 21 1 245678899999999974
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.39 Score=41.52 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=57.4
Q ss_pred ccCCCeEEEEcCCC--ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp--G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=.|+|. |.....+++..+ .+|+++|.++.+. . -+...+ -|..+.+..+.+.
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--------------a~Vi~~~~~~~~~~~~~~lga~~~-~~~~~~~~~~~~~ 206 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILN--------------FRLIAVTRNNKHTEELLRLGAAYV-IDTSTAPLYETVM 206 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT--------------CEEEEEESSSTTHHHHHHHTCSEE-EETTTSCHHHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHhCCCcEE-EeCCcccHHHHHH
Confidence 47899999999863 444445565554 6999999887541 0 122111 1333434444555
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+... |. . .+..+.++|++||++++-
T Consensus 207 ~~~~~~g~Dvvid~~-----g~---~----------~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 207 ELTNGIGADAAIDSI-----GG---P----------DGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp HHTTTSCEEEEEESS-----CH---H----------HHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCCcEEEECC-----CC---h----------hHHHHHHHhcCCCEEEEE
Confidence 555556899998642 21 0 122344799999999874
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.85 E-value=0.87 Score=37.50 Aligned_cols=116 Identities=8% Similarity=-0.020 Sum_probs=70.3
Q ss_pred cCCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
.++++||=.|++ +|++...+++.+.. ...+|+.++.+... ...++.++.+|+++.+..+
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 80 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKR-----------EGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQID 80 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHH-----------TTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHH-----------cCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 356899999984 57888887776642 24688888887421 1235778899999987665
Q ss_pred HHHHhcC--CCcccEEEeCCCCCCC-----CCCC-cCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFD--GCKADLVVCDGAPDVT-----GLHD-MDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~~~~~-----g~~~-~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+.+. -+.+|+++.+...... .... .+... ..+. ....+..+...++++|+++..
T Consensus 81 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 152 (271)
T 3ek2_A 81 ALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL 152 (271)
T ss_dssp HHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEE
Confidence 5443321 1479999998754321 1111 22211 1111 133455566677778888764
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=92.85 E-value=0.46 Score=39.55 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=69.5
Q ss_pred CCCeEEEEcC-CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CC-CCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI-EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~-gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~-~~v~~~~gDi~~~~~~~~i 111 (249)
.++++|=.|+ |+|++...+++.+.. ...+|+.+|.++.. .+ .++.++.+|+++.+..+.+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 74 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQE-----------QGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASL 74 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHH-----------TTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHH-----------CCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHH
Confidence 3568888898 588999988887642 24688888887632 11 2467789999998765554
Q ss_pred HHh----cC-CCcccEEEeCCCCCC------CCCCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRH----FD-GCKADLVVCDGAPDV------TGLHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~----~~-~~~~DlVlsD~~~~~------~g~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+. +. .+.+|+++.+..... ....+.+... ..+. ....+..+...++++|++|..
T Consensus 75 ~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 147 (269)
T 2h7i_A 75 AGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGM 147 (269)
T ss_dssp HHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEE
Confidence 433 22 127999999875322 1111122211 1111 123455566666778888864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.80 E-value=0.67 Score=40.60 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=54.0
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCC--hhhHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITN--ARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~--~~~~~~ 110 (249)
+++|.+||=.|+|+ |.....+++.++ ..+|+++|.++.+. . -+.. .+ |..+ .+..+.
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~G-------------a~~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~~~ 253 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAG-------------AARIIGVDINKDKFAKAKEVGATECV--NPQDYKKPIQEV 253 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCSEEE--CGGGCSSCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCeEEEEcCCHHHHHHHHHhCCceEe--cccccchhHHHH
Confidence 46899999999643 333333444443 13799999887431 0 1221 12 2221 122233
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
+.+. .++.+|+|+-. .|. ...+..+.++|++| |++++-
T Consensus 254 ~~~~-~~~g~D~vid~-----~g~------------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 254 LTEM-SNGGVDFSFEV-----IGR------------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHHH-TTSCBSEEEEC-----SCC------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHHH-hCCCCcEEEEC-----CCC------------HHHHHHHHHHhhcCCcEEEEe
Confidence 3332 23479999853 221 12466788999999 999863
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.38 Score=41.67 Aligned_cols=92 Identities=20% Similarity=0.087 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCC--CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~--~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+|.+||-.|+ |+.... +++..+ . +|+++|.++.+ .........-|..+.+..+.+.+.
T Consensus 164 ~g~~VlV~Ga--G~vG~~~~q~a~~~G--------------a~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~ 227 (343)
T 2dq4_A 164 SGKSVLITGA--GPIGLMAAMVVRASG--------------AGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRV 227 (343)
T ss_dssp TTSCEEEECC--SHHHHHHHHHHHHTT--------------CCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHH
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC--------------CCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHh
Confidence 8899999998 555544 444443 4 89999987532 111110011233333333344433
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
. ...+|+|+-. .|. ...+..+.++|+++|++++-
T Consensus 228 ~-~~g~D~vid~-----~g~------------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 228 T-GSGVEVLLEF-----SGN------------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp H-SSCEEEEEEC-----SCC------------HHHHHHHHHHEEEEEEEEEC
T ss_pred c-CCCCCEEEEC-----CCC------------HHHHHHHHHHHhcCCEEEEE
Confidence 3 4579999853 221 12456788999999998863
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.2 Score=44.18 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=55.7
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++|.+||=.|+|+ |.++..+++..+ ..+|+++|.++.+. + -|...+ -|..+.+..+.+.+
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~i~~ 245 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAG-------------ATTVILSTRQATKRRLAEEVGATAT-VDPSAGDVVEAIAG 245 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCHHHHHHHHHHTCSEE-ECTTSSCHHHHHHS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHcCCCEE-ECCCCcCHHHHHHh
Confidence 47899999999744 333334455544 23899999886431 0 122111 13333333333433
Q ss_pred h--cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 H--FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~--~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
. +.++.+|+|+-. .|. ...+..+.++|++||++++-
T Consensus 246 ~~~~~~gg~Dvvid~-----~G~------------~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 246 PVGLVPGGVDVVIEC-----AGV------------AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTSSSTTCEEEEEEC-----SCC------------HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhccCCCCCEEEEC-----CCC------------HHHHHHHHHHhccCCEEEEE
Confidence 1 223479999852 221 12467788999999999873
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=2.7 Score=35.63 Aligned_cols=74 Identities=23% Similarity=0.277 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.+++||=.| |+|+...++++.+-. .+..|++++.++.. .+.++.++.+|+++.+....+.+.
T Consensus 19 ~~~~vlVTG-asG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 19 SHMRILITG-GAGCLGSNLIEHWLP-----------QGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp TCCEEEEET-TTSHHHHHHHHHHGG-----------GTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhh
Confidence 357888887 678888888877642 23689999986432 235788899999998765554432
Q ss_pred cCCCcccEEEeCCCC
Q 025715 115 FDGCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~ 129 (249)
. .+|+|+...+.
T Consensus 87 ~---~~D~vih~A~~ 98 (330)
T 2pzm_A 87 F---KPTHVVHSAAA 98 (330)
T ss_dssp H---CCSEEEECCCC
T ss_pred c---CCCEEEECCcc
Confidence 2 58999998754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.69 Score=40.46 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=54.3
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCC--hhhHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITN--ARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~--~~~~~~ 110 (249)
+++|.+||=.|+|+ |.....+++.++ ..+|+++|.++.+. . -+.. .+ |..+ .+..+.
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~G-------------a~~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~~~ 252 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAG-------------ASRIIGVDINKDKFARAKEFGATECI--NPQDFSKPIQEV 252 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEECSCGGGHHHHHHHTCSEEE--CGGGCSSCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCeEEEEcCCHHHHHHHHHcCCceEe--ccccccccHHHH
Confidence 46899999999643 333333455554 13799999887541 1 1221 12 2221 122333
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
+.+... +.+|+|+-. .|. ...+..+.++|+++ |++++-
T Consensus 253 v~~~~~-~g~D~vid~-----~g~------------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 253 LIEMTD-GGVDYSFEC-----IGN------------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHHHTT-SCBSEEEEC-----SCC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHhC-CCCCEEEEC-----CCc------------HHHHHHHHHhhccCCcEEEEE
Confidence 433323 479999853 221 12466788999999 999863
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=1.5 Score=35.63 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHh----cC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRH----FD 116 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~----~~ 116 (249)
.++++|=.| |+|+....+++.+.. ...+|+.++.++......+.++.+|+++.+..+.+.+. +.
T Consensus 6 ~~k~vlVTG-as~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 73 (241)
T 1dhr_A 6 EARRVLVYG-GRGALGSRCVQAFRA-----------RNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLG 73 (241)
T ss_dssp CCCEEEEET-TTSHHHHHHHHHHHT-----------TTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHh-----------CCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 456788777 567788888777642 34689999988754333456678999987765544332 32
Q ss_pred CCcccEEEeCCCCCCCCC--CCcCHH---HHHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 117 GCKADLVVCDGAPDVTGL--HDMDEF---VQSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~--~~~~~~---~~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+|+++.+......+. ...+.. ...+. ....+..+...++++|+++..
T Consensus 74 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~i 132 (241)
T 1dhr_A 74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLA 132 (241)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEE
Confidence 147999999875332111 111111 11111 123344555666677888763
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.23 E-value=0.1 Score=43.78 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=29.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
++|..|||.+||+|..+.++.+. + .+++|+|+++.
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~-g--------------r~~ig~e~~~~ 245 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL-G--------------RNFIGCDMNAE 245 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT-T--------------CEEEEEESCHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-C--------------CeEEEEeCCHH
Confidence 68899999999999998877653 3 58999999873
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=1.3 Score=37.50 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. .++...+++.+.. ...+|+.+|.++.. ...++.++++|+++.+..+.
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 97 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCA-----------QGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDN 97 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH-----------TTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence 467888888764 5777777776542 34689999988532 12346788999999876655
Q ss_pred HHHhcCC--CcccEEEeCCCCCC-----CCCCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFDG--CKADLVVCDGAPDV-----TGLHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~~--~~~DlVlsD~~~~~-----~g~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.+.+.. +.+|+++.+..... ....+.+... ..+. ....+..+...++++|++|...
T Consensus 98 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 98 MFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 5443211 47999999875432 1111222111 1111 1334555666777789888643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.33 Score=42.02 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=60.1
Q ss_pred ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=+|+|+++-... +++..+ ..+|+++|.++.+. --+. ..+ |..+.+..+++.
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~-------------g~~Vi~~~~~~~r~~~~~~~Ga~~~i--~~~~~~~~~~v~ 225 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVF-------------GAKVIAVDINQDKLNLAKKIGADVTI--NSGDVNPVDEIK 225 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTS-------------CCEEEEEESCHHHHHHHHHTTCSEEE--EC-CCCHHHHHH
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhC-------------CCEEEEEECcHHHhhhhhhcCCeEEE--eCCCCCHHHHhh
Confidence 37899999999988654433 344443 47999999987431 1121 122 333444445566
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|.++-+.. . ...+..+.++|+++|++++.
T Consensus 226 ~~t~g~g~d~~~~~~~-----~------------~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 226 KITGGLGVQSAIVCAV-----A------------RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp HHTTSSCEEEEEECCS-----C------------HHHHHHHHHTEEEEEEEEEC
T ss_pred hhcCCCCceEEEEecc-----C------------cchhheeheeecCCceEEEE
Confidence 5555567888876531 1 13567788999999999864
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=1.4 Score=36.62 Aligned_cols=78 Identities=12% Similarity=0.034 Sum_probs=53.6
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----C----CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P----IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~----~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++ +|+....+++.+.. .+.+|+.++.++.. . ..++.++.+|+++.+....
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~ 73 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFN-----------QGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKS 73 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHT-----------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHH
Confidence 35688888886 48888888887752 34689999887631 0 1346788999999876555
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+. -+.+|+++.+...
T Consensus 74 ~~~~~~~~~g~id~lv~nAg~ 94 (275)
T 2pd4_A 74 LYNSVKKDLGSLDFIVHSVAF 94 (275)
T ss_dssp HHHHHHHHTSCEEEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 443221 1479999998753
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.23 Score=43.35 Aligned_cols=92 Identities=13% Similarity=-0.008 Sum_probs=56.1
Q ss_pred cCC------CeEEEEcCCCChHHHHH-HHHh-cCCCCCCCCCCCCCCCe-EEEecCCCC---C-CC---CCceEeecCCC
Q 025715 40 EGV------KRVVDLCAAPGSWSQVL-SRKL-YLPAKLSPDSREGDLPL-IVAIDLQPM---A-PI---EGVIQVQGDIT 103 (249)
Q Consensus 40 ~~g------~~vLDLG~gpG~~s~~l-~~~~-~~~~~~~~~~~~~~~~~-vvavDi~~~---~-~~---~~v~~~~gDi~ 103 (249)
++| .+||=.|+ |+....+ .+.. .. ...+ |+++|.++. + .+ -|...+ |..
T Consensus 165 ~~g~~~~~~~~VlV~Ga--G~vG~~a~iqla~k~-----------~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~ 229 (357)
T 2b5w_A 165 SRSAFDWDPSSAFVLGN--GSLGLLTLAMLKVDD-----------KGYENLYCLGRRDRPDPTIDIIEELDATYV--DSR 229 (357)
T ss_dssp TTTTSCCCCCEEEEECC--SHHHHHHHHHHHHCT-----------TCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETT
T ss_pred CCCcccCCCCEEEEECC--CHHHHHHHHHHHHHH-----------cCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCC
Confidence 578 99999997 6666655 5444 31 1245 999999875 3 11 244333 444
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+..+ +.+. . +.+|+|+-- .|. . ..+..+.++|++||++++-
T Consensus 230 ~~~~~~-i~~~-~-gg~Dvvid~-----~g~----~--------~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 230 QTPVED-VPDV-Y-EQMDFIYEA-----TGF----P--------KHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp TSCGGG-HHHH-S-CCEEEEEEC-----SCC----H--------HHHHHHHHHEEEEEEEEEC
T ss_pred ccCHHH-HHHh-C-CCCCEEEEC-----CCC----h--------HHHHHHHHHHhcCCEEEEE
Confidence 333323 3333 3 379999842 221 0 2466788999999999873
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.37 Score=41.78 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=56.5
Q ss_pred ccCCCeEEEEcC--CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCA--APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~--gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||-.|+ |-|.....+++..+ .+|+++|.++.+. . -+...+ .|..+.+..+.+.
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G--------------~~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~ 228 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFG--------------ARVIATAGSEDKLRRAKALGADET-VNYTHPDWPKEVR 228 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTT--------------CEEEEEESSHHHHHHHHHHTCSEE-EETTSTTHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHhcCCCEE-EcCCcccHHHHHH
Confidence 468899999998 33444444555443 6899999876321 1 122211 2444444444454
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+......+|+|+..... + .+..+.++|+++|++++
T Consensus 229 ~~~~~~~~d~vi~~~g~--------~----------~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 229 RLTGGKGADKVVDHTGA--------L----------YFEGVIKATANGGRIAI 263 (343)
T ss_dssp HHTTTTCEEEEEESSCS--------S----------SHHHHHHHEEEEEEEEE
T ss_pred HHhCCCCceEEEECCCH--------H----------HHHHHHHhhccCCEEEE
Confidence 44444579999975421 0 24567789999999886
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.54 E-value=1.3 Score=37.63 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=51.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~ 109 (249)
.++++||=.| |+|....++++.+-. .+.+|++++.++... ..++.++.+|+++.+...
T Consensus 12 ~~~~~vlVTG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 79 (335)
T 1rpn_A 12 SMTRSALVTG-ITGQDGAYLAKLLLE-----------KGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQ 79 (335)
T ss_dssp ---CEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHH
T ss_pred ccCCeEEEEC-CCChHHHHHHHHHHH-----------CCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHH
Confidence 4678999887 679999888776641 236899999876431 246788899999987655
Q ss_pred HHHHhcCCCcccEEEeCCCC
Q 025715 110 VVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~ 129 (249)
.+.+.. .+|.|+...+.
T Consensus 80 ~~~~~~---~~d~Vih~A~~ 96 (335)
T 1rpn_A 80 RAVIKA---QPQEVYNLAAQ 96 (335)
T ss_dssp HHHHHH---CCSEEEECCSC
T ss_pred HHHHHc---CCCEEEECccc
Confidence 544322 58999987653
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=91.37 E-value=2 Score=33.53 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=48.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccE
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~Dl 122 (249)
+++|=.| |+|+....+++++. .+.+|++++.++. .+.+|+++.+..+.+.+.+ +.+|.
T Consensus 4 M~vlVtG-asg~iG~~~~~~l~------------~g~~V~~~~r~~~-------~~~~D~~~~~~~~~~~~~~--~~~d~ 61 (202)
T 3d7l_A 4 MKILLIG-ASGTLGSAVKERLE------------KKAEVITAGRHSG-------DVTVDITNIDSIKKMYEQV--GKVDA 61 (202)
T ss_dssp CEEEEET-TTSHHHHHHHHHHT------------TTSEEEEEESSSS-------SEECCTTCHHHHHHHHHHH--CCEEE
T ss_pred cEEEEEc-CCcHHHHHHHHHHH------------CCCeEEEEecCcc-------ceeeecCCHHHHHHHHHHh--CCCCE
Confidence 4788777 46888888888774 1368999987753 4678999988776666554 46999
Q ss_pred EEeCCCC
Q 025715 123 VVCDGAP 129 (249)
Q Consensus 123 VlsD~~~ 129 (249)
|+.....
T Consensus 62 vi~~ag~ 68 (202)
T 3d7l_A 62 IVSATGS 68 (202)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.67 Score=41.16 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=53.7
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~ 110 (249)
+++|.+||=.|+ |+.... +++..+ ..+|+++|.++.+. . -|.. .+ |..+.+..+.
T Consensus 211 ~~~g~~VlV~Ga--G~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~ 273 (404)
T 3ip1_A 211 IRPGDNVVILGG--GPIGLAAVAILKHAG-------------ASKVILSEPSEVRRNLAKELGADHVI--DPTKENFVEA 273 (404)
T ss_dssp CCTTCEEEEECC--SHHHHHHHHHHHHTT-------------CSEEEEECSCHHHHHHHHHHTCSEEE--CTTTSCHHHH
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHcCCCEEE--cCCCCCHHHH
Confidence 478999999987 455554 444443 23899999887431 0 1221 22 3333334445
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+...+..+|+|+-- .|. ... ....++....+.+++||++++-
T Consensus 274 i~~~t~g~g~D~vid~-----~g~----~~~---~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 274 VLDYTNGLGAKLFLEA-----TGV----PQL---VWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp HHHHTTTCCCSEEEEC-----SSC----HHH---HHHHHHHHHHHCSCCCCEEEEC
T ss_pred HHHHhCCCCCCEEEEC-----CCC----cHH---HHHHHHHHHHhccCCCcEEEEe
Confidence 5554455579999842 222 100 0111122222445999999973
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=1.2 Score=37.54 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG-~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++.| |+...+++.+.. ...+|+.++.++.. ...++.++.+|+++.+..+.
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 98 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAARE-----------AGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDA 98 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHH-----------TTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHH
Confidence 4678898898754 567766665531 24688888877421 12357788999999876655
Q ss_pred HHHhcC--CCcccEEEeCCCCCC-----CCCCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEEE
Q 025715 111 VIRHFD--GCKADLVVCDGAPDV-----TGLHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~~~-----~g~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.+.+. -+.+|+++.+..... ......+... ..+. ....+..+...++++|++|...
T Consensus 99 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 99 VFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 544321 147999999875432 1111122211 1111 1334555666777889988643
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=91.24 E-value=2.1 Score=33.97 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=50.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CCCCceEeecCCCC-hhhHHHHHHhcCCCc
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITN-ARTAEVVIRHFDGCK 119 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~~~v~~~~gDi~~-~~~~~~i~~~~~~~~ 119 (249)
++||=.| |+|+....+++.+-. .+.+|++++.++.. ...+++++.+|+++ .+.+ .+.+. .
T Consensus 1 M~ilItG-atG~iG~~l~~~L~~-----------~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~---~~~~~--~ 63 (219)
T 3dqp_A 1 MKIFIVG-STGRVGKSLLKSLST-----------TDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEM---AKQLH--G 63 (219)
T ss_dssp CEEEEES-TTSHHHHHHHHHHTT-----------SSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHH---HTTTT--T
T ss_pred CeEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCccchhhcCCceEEEecccCCHHHH---HHHHc--C
Confidence 3566566 679999999887752 24689999998743 23688999999999 6543 33333 5
Q ss_pred ccEEEeCCCCC
Q 025715 120 ADLVVCDGAPD 130 (249)
Q Consensus 120 ~DlVlsD~~~~ 130 (249)
+|+|+......
T Consensus 64 ~d~vi~~ag~~ 74 (219)
T 3dqp_A 64 MDAIINVSGSG 74 (219)
T ss_dssp CSEEEECCCCT
T ss_pred CCEEEECCcCC
Confidence 99999987543
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=91.13 E-value=2 Score=36.13 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=50.2
Q ss_pred cccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCC
Q 025715 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 38 ~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
...+-++||=.| |+|....++++.+-. .+..|++++.++.....++.++.+|+++.+....+.+.
T Consensus 8 ~~~~~~~vlVTG-atG~iG~~l~~~L~~-----------~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~--- 72 (321)
T 2pk3_A 8 HHHGSMRALITG-VAGFVGKYLANHLTE-----------QNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISD--- 72 (321)
T ss_dssp -----CEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHH---
T ss_pred cccCcceEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHh---
Confidence 334556777655 679999988876641 23689999987643111678889999998765554432
Q ss_pred CcccEEEeCCCC
Q 025715 118 CKADLVVCDGAP 129 (249)
Q Consensus 118 ~~~DlVlsD~~~ 129 (249)
..+|.|+...+.
T Consensus 73 ~~~d~vih~A~~ 84 (321)
T 2pk3_A 73 IKPDYIFHLAAK 84 (321)
T ss_dssp HCCSEEEECCSC
T ss_pred cCCCEEEEcCcc
Confidence 458999988654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.96 E-value=0.46 Score=41.89 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=55.2
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCC---Chhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDIT---NART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~---~~~~ 107 (249)
+++|.+||-.|+ |+....+ ++..+ ..+|+++|.++.+. . -|.. .+ |.. +.+.
T Consensus 193 ~~~g~~VlV~Ga--G~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~ 255 (380)
T 1vj0_A 193 SFAGKTVVIQGA--GPLGLFGVVIARSLG-------------AENVIVIAGSPNRLKLAEEIGADLTL--NRRETSVEER 255 (380)
T ss_dssp CCBTCEEEEECC--SHHHHHHHHHHHHTT-------------BSEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHH
T ss_pred CCCCCEEEEECc--CHHHHHHHHHHHHcC-------------CceEEEEcCCHHHHHHHHHcCCcEEE--eccccCcchH
Confidence 468999999994 5555544 43332 14899999876321 0 1221 22 222 2233
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+.+...+..+|+|+-.. |.. ..+..+.++|++||++++-
T Consensus 256 ~~~v~~~~~g~g~Dvvid~~-----g~~------------~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 256 RKAIMDITHGRGADFILEAT-----GDS------------RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHHHHHHTTTSCEEEEEECS-----SCT------------THHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHhCCCCCcEEEECC-----CCH------------HHHHHHHHHHhcCCEEEEE
Confidence 34444433444799998532 210 1356778999999999863
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.85 E-value=1.8 Score=34.93 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHH----hcCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIR----HFDG 117 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~----~~~~ 117 (249)
++++|=.| |+|+....+++.+.. ...+|+.++.++......+.++.+|+++.+..+.+.+ .+..
T Consensus 3 ~k~vlITG-as~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 70 (236)
T 1ooe_A 3 SGKVIVYG-GKGALGSAILEFFKK-----------NGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQG 70 (236)
T ss_dssp CEEEEEET-TTSHHHHHHHHHHHH-----------TTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 45666666 567788887776642 2368999998875433345667899998776544433 2322
Q ss_pred CcccEEEeCCCCCCCCC--CCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 118 CKADLVVCDGAPDVTGL--HDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~--~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+|+|+.+......+. ...+... ..+. ....+..+...++++|+++..
T Consensus 71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 128 (236)
T 1ooe_A 71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLT 128 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEE
Confidence 47999999875322111 1111111 1111 122345555666677888763
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=2.2 Score=36.39 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~ 120 (249)
++++||=.| |+|....++++.+-. .+..|++++.++.. .++.++.+|+++.+....+. . .+
T Consensus 18 ~~~~vlVtG-atG~iG~~l~~~L~~-----------~G~~V~~~~r~~~~--~~~~~~~~Dl~d~~~~~~~~---~--~~ 78 (347)
T 4id9_A 18 GSHMILVTG-SAGRVGRAVVAALRT-----------QGRTVRGFDLRPSG--TGGEEVVGSLEDGQALSDAI---M--GV 78 (347)
T ss_dssp ---CEEEET-TTSHHHHHHHHHHHH-----------TTCCEEEEESSCCS--SCCSEEESCTTCHHHHHHHH---T--TC
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHh-----------CCCEEEEEeCCCCC--CCccEEecCcCCHHHHHHHH---h--CC
Confidence 467888887 679999988876641 23689999988755 67888999999987654443 3 69
Q ss_pred cEEEeCCCC
Q 025715 121 DLVVCDGAP 129 (249)
Q Consensus 121 DlVlsD~~~ 129 (249)
|.|+...+.
T Consensus 79 d~vih~A~~ 87 (347)
T 4id9_A 79 SAVLHLGAF 87 (347)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 999987654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.78 E-value=2.3 Score=35.44 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. |+....+++.+.. .+.+|+.++.++.. ...++.++.+|+++.+..+.
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 88 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHR-----------EGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKN 88 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHH-----------TTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence 457888888864 8888888776642 24689988887621 01346788999999876555
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+. -+.+|+++.+...
T Consensus 89 ~~~~~~~~~g~iD~lv~~Ag~ 109 (285)
T 2p91_A 89 LKKFLEENWGSLDIIVHSIAY 109 (285)
T ss_dssp HHHHHHHHTSCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 443221 1479999998753
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.72 E-value=0.52 Score=40.78 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=54.9
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++|++||-.|+|+ |.....+++..+ .+|+++|.++.+. . -+...+ .|..+.+..+.+.+
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~~-~d~~~~~~~~~~~~ 226 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMG--------------LNVVAVDIGDEKLELAKELGADLV-VNPLKEDAAKFMKE 226 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSCHHHHHHHHHTTCSEE-ECTTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHCCCCEE-ecCCCccHHHHHHH
Confidence 47899999999854 333333444443 6999999876321 0 122211 24443333334433
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.. +.+|+|+... |. . ..+..+.++|+++|++++
T Consensus 227 ~~--~~~d~vid~~-----g~----~--------~~~~~~~~~l~~~G~~v~ 259 (339)
T 1rjw_A 227 KV--GGVHAAVVTA-----VS----K--------PAFQSAYNSIRRGGACVL 259 (339)
T ss_dssp HH--SSEEEEEESS-----CC----H--------HHHHHHHHHEEEEEEEEE
T ss_pred Hh--CCCCEEEECC-----CC----H--------HHHHHHHHHhhcCCEEEE
Confidence 33 4799998642 21 0 245677889999999986
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=90.64 E-value=0.28 Score=44.11 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=31.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHH-HhcCCCCCCCCCCCCCCCeEEEecCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQP 88 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~-~~~~~~~~~~~~~~~~~~~vvavDi~~ 88 (249)
+++..|+|+||+.|.++..++. ..+ +.++|++++.+|
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~------------~~~~V~afEP~p 262 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKG------------KFERVWMIEPDR 262 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTS------------CCSEEEEECCCH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcC------------CCCEEEEEcCCH
Confidence 6889999999999999998874 443 237999999987
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=1.4 Score=36.38 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----C----CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P----IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~----~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++. |+....+++.+.. ...+|+.++.++.. . ..+..++.+|+++.+..+.
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~ 76 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHR-----------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDT 76 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHH-----------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHH
Confidence 356788888763 8888888876642 24689999887611 0 1234678899999876655
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+.+|+++.+...
T Consensus 77 ~~~~~~~~~g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 77 MFAELGKVWPKFDGFVHSIGF 97 (265)
T ss_dssp HHHHHHTTCSSEEEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 544321 1479999998753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.45 E-value=0.46 Score=41.23 Aligned_cols=97 Identities=16% Similarity=0.046 Sum_probs=55.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCC-hhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITN-ARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~-~~~~~~i~~ 113 (249)
+++|++||-.|+ +|+....+.+.... ...+|+++|.++.+. . -+... ..|..+ .+..+.+.+
T Consensus 167 ~~~g~~vlV~Ga-~ggiG~~~~~~a~~-----------~Ga~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 167 LMAGHWVAISGA-AGGLGSLAVQYAKA-----------MGYRVLGIDGGEGKEELFRSIGGEV-FIDFTKEKDIVGAVLK 233 (347)
T ss_dssp CCTTCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECSTTHHHHHHHTTCCE-EEETTTCSCHHHHHHH
T ss_pred CCCCCEEEEECC-CchHHHHHHHHHHH-----------CCCcEEEEcCCHHHHHHHHHcCCce-EEecCccHhHHHHHHH
Confidence 468999999997 34444443332210 126899999876431 0 12221 125442 222333333
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.... .+|+|+.... . ...+..+.+.|++||++++.
T Consensus 234 ~~~~-~~D~vi~~~g-----~------------~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 234 ATDG-GAHGVINVSV-----S------------EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHTS-CEEEEEECSS-----C------------HHHHHHHTTSEEEEEEEEEC
T ss_pred HhCC-CCCEEEECCC-----c------------HHHHHHHHHHHhcCCEEEEE
Confidence 3333 7999997532 1 02466788999999999863
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.46 Score=41.21 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCC-eEEEecCCCCCC--C--CCceEeecCCCChhhHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
+|.+||=+|+ |+....+ ++..+ . +|+++|.++.+. . -+...+ -|..+.+..+.+.
T Consensus 167 ~g~~VlV~Ga--G~vG~~~~q~a~~~G--------------a~~Vi~~~~~~~~~~~~~~~Ga~~~-~~~~~~~~~~~v~ 229 (348)
T 2d8a_A 167 SGKSVLITGA--GPLGLLGIAVAKASG--------------AYPVIVSEPSDFRRELAKKVGADYV-INPFEEDVVKEVM 229 (348)
T ss_dssp TTCCEEEECC--SHHHHHHHHHHHHTT--------------CCSEEEECSCHHHHHHHHHHTCSEE-ECTTTSCHHHHHH
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC--------------CCEEEEECCCHHHHHHHHHhCCCEE-ECCCCcCHHHHHH
Confidence 8899999998 5555544 43433 4 899999886321 1 122111 1333333344444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+... |. ...+..+.++|+++|++++-
T Consensus 230 ~~~~g~g~D~vid~~-----g~------------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 230 DITDGNGVDVFLEFS-----GA------------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp HHTTTSCEEEEEECS-----CC------------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHcCCCCCCEEEECC-----CC------------HHHHHHHHHHHhcCCEEEEE
Confidence 433445799998632 21 02456778999999998863
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.29 E-value=5.9 Score=31.57 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=50.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC-CCcc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD-GCKA 120 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~-~~~~ 120 (249)
++++|=.| |+|+....+++.+.. ...+|++++.++. ...+.++.+|+++.+....+.+.+. .+.+
T Consensus 2 ~k~vlVtG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 67 (242)
T 1uay_A 2 ERSALVTG-GASGLGRAAALALKA-----------RGYRVVVLDLRRE--GEDLIYVEGDVTREEDVRRAVARAQEEAPL 67 (242)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHH-----------HTCEEEEEESSCC--SSSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH-----------CCCEEEEEccCcc--ccceEEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence 35677777 468888887776531 2368999998875 4567788999999876655544321 1368
Q ss_pred cEEEeCCCC
Q 025715 121 DLVVCDGAP 129 (249)
Q Consensus 121 DlVlsD~~~ 129 (249)
|.|+.+...
T Consensus 68 d~li~~ag~ 76 (242)
T 1uay_A 68 FAVVSAAGV 76 (242)
T ss_dssp EEEEECCCC
T ss_pred eEEEEcccc
Confidence 999988643
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.27 E-value=2.7 Score=35.56 Aligned_cols=74 Identities=9% Similarity=-0.048 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~~ 109 (249)
.+++||=.| |+|+...++++++-. .+..|++++.++... -.++.++.+|+++.+...
T Consensus 4 ~~~~vlVTG-atG~iG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (341)
T 3enk_A 4 TKGTILVTG-GAGYIGSHTAVELLA-----------HGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALA 71 (341)
T ss_dssp SSCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHH
T ss_pred CCcEEEEec-CCcHHHHHHHHHHHH-----------CCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHH
Confidence 346777666 678888888877642 246899999876432 136788999999987666
Q ss_pred HHHHhcCCCcccEEEeCCCC
Q 025715 110 VVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~ 129 (249)
.+.+. ..+|+|+...+.
T Consensus 72 ~~~~~---~~~d~vih~A~~ 88 (341)
T 3enk_A 72 RIFDA---HPITAAIHFAAL 88 (341)
T ss_dssp HHHHH---SCCCEEEECCCC
T ss_pred HHHhc---cCCcEEEECccc
Confidence 55432 469999987753
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=90.19 E-value=4 Score=34.66 Aligned_cols=74 Identities=20% Similarity=0.171 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.+++||=.| |+|....++++.+-. .+..|++++.++.. .++++.++.+|+++.+....+.+.
T Consensus 20 ~~~~vlVTG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~ 87 (333)
T 2q1w_A 20 HMKKVFITG-ICGQIGSHIAELLLE-----------RGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGD 87 (333)
T ss_dssp -CCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeC-CccHHHHHHHHHHHH-----------CCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhc
Confidence 357888777 678899888776641 23689999887532 125788899999998765554432
Q ss_pred cCCCcccEEEeCCCC
Q 025715 115 FDGCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~ 129 (249)
..+|+|+...+.
T Consensus 88 ---~~~D~vih~A~~ 99 (333)
T 2q1w_A 88 ---LQPDAVVHTAAS 99 (333)
T ss_dssp ---HCCSEEEECCCC
T ss_pred ---cCCcEEEECcee
Confidence 359999988754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.92 Score=39.27 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=51.7
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++|.+||=.|+|+ |.....+++..+ .+|+++|.++.+. . -|...+. .+.+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~v~---~~~~------- 229 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMG--------------AEVSVFARNEHKKQDALSMGVKHFY---TDPK------- 229 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTT--------------CEEEEECSSSTTHHHHHHTTCSEEE---SSGG-------
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--------------CeEEEEeCCHHHHHHHHhcCCCeec---CCHH-------
Confidence 47899999998754 333334555544 6899999887541 0 1222221 2221
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+. ..+|+|+--. |.. ..+..+.++|++||++++-
T Consensus 230 ~~~-~~~D~vid~~-----g~~------------~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 230 QCK-EELDFIISTI-----PTH------------YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp GCC-SCEEEEEECC-----CSC------------CCHHHHHTTEEEEEEEEEC
T ss_pred HHh-cCCCEEEECC-----CcH------------HHHHHHHHHHhcCCEEEEE
Confidence 123 2799998532 211 1255678999999999974
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=90.03 E-value=4.6 Score=32.17 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=62.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
++++|=-|+ +|+....+++++.. ...+|+.++.++. .|+++.+..+.+.+.+ +++|
T Consensus 6 ~k~vlVTGa-s~gIG~~~a~~l~~-----------~G~~V~~~~r~~~----------~D~~~~~~v~~~~~~~--g~id 61 (223)
T 3uce_A 6 KTVYVVLGG-TSGIGAELAKQLES-----------EHTIVHVASRQTG----------LDISDEKSVYHYFETI--GAFD 61 (223)
T ss_dssp CEEEEEETT-TSHHHHHHHHHHCS-----------TTEEEEEESGGGT----------CCTTCHHHHHHHHHHH--CSEE
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH-----------CCCEEEEecCCcc----------cCCCCHHHHHHHHHHh--CCCC
Confidence 456666664 57788888887752 3457888886653 6999988777776665 4799
Q ss_pred EEEeCCCCC-C-CCCCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 122 LVVCDGAPD-V-TGLHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 122 lVlsD~~~~-~-~g~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.++.+.... . ....+.+... ..+. ....++.+...++++|+++..
T Consensus 62 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~ 115 (223)
T 3uce_A 62 HLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLT 115 (223)
T ss_dssp EEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEe
Confidence 999987532 1 1112222211 1111 133455666777888988864
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.70 E-value=0.56 Score=41.24 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=52.0
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++|.+||-+|+|+ |.....+++..+ .+|+++|.++.+. . -|...+ -|..+.+.. +
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~G--------------a~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~----~ 252 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMG--------------AHVVAFTTSEAKREAAKALGADEV-VNSRNADEM----A 252 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSGGGHHHHHHHTCSEE-EETTCHHHH----H
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHcCCcEE-eccccHHHH----H
Confidence 47899999999754 333444555544 6799999887431 1 122111 133332211 2
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+. ..+|+|+--. |.. ..+..+.++|+++|++++
T Consensus 253 ~~~-~g~Dvvid~~-----g~~------------~~~~~~~~~l~~~G~iv~ 286 (369)
T 1uuf_A 253 AHL-KSFDFILNTV-----AAP------------HNLDDFTTLLKRDGTMTL 286 (369)
T ss_dssp TTT-TCEEEEEECC-----SSC------------CCHHHHHTTEEEEEEEEE
T ss_pred Hhh-cCCCEEEECC-----CCH------------HHHHHHHHHhccCCEEEE
Confidence 222 4799998532 211 124567889999999886
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=89.69 E-value=6.7 Score=32.45 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.|+++|=-|++. |+...+++++.. ...+|+.+|+++... -.++..++.|+++.+..+.+.+.+
T Consensus 10 ~GK~alVTGas~-GIG~aia~~la~-----------~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~- 76 (242)
T 4b79_A 10 AGQQVLVTGGSS-GIGAAIAMQFAE-----------LGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEAL- 76 (242)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH-----------TTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHC-
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH-----------CCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhc-
Confidence 477888778664 567777666642 357999999987432 246778899999998888888776
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
++.|+++.|...
T Consensus 77 -g~iDiLVNNAGi 88 (242)
T 4b79_A 77 -PRLDVLVNNAGI 88 (242)
T ss_dssp -SCCSEEEECCCC
T ss_pred -CCCCEEEECCCC
Confidence 479999999753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.22 Score=43.28 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHh--cCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCC-hhhHHHH
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKL--YLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITN-ARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~--~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~-~~~~~~i 111 (249)
+|.+||-+|+|+ |.....+++.. + .+|+++|.++.+. . -+.. .+ |..+ .+....+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~~~ 233 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKN--------------ITIVGISRSKKHRDFALELGADYVS--EMKDAESLINKL 233 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTT--------------CEEEEECSCHHHHHHHHHHTCSEEE--CHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCC--------------CEEEEEeCCHHHHHHHHHhCCCEEe--ccccchHHHHHh
Confidence 899999999853 33344455555 4 6899999876331 1 1221 11 2111 1112222
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
. .+..+|+|+-- .|. . ..+..+.++|++||++++-
T Consensus 234 ~---~g~g~D~vid~-----~g~----~--------~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 234 T---DGLGASIAIDL-----VGT----E--------ETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp H---TTCCEEEEEES-----SCC----H--------HHHHHHHHHEEEEEEEEEC
T ss_pred h---cCCCccEEEEC-----CCC----h--------HHHHHHHHHhhcCCEEEEe
Confidence 1 23479999853 221 1 2466788999999999863
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=1.7 Score=35.84 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=52.1
Q ss_pred CCCeEEEEcCC-CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~g-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++ +|+....+++.+.. ...+|+.++.++.. ...++.++.+|+++.+..+.
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~ 75 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKE-----------AGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDA 75 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHH-----------HTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 35688888986 48888888776631 23688988887621 01346788999999876554
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+.+|+|+.+...
T Consensus 76 ~~~~~~~~~g~iD~lv~~Ag~ 96 (261)
T 2wyu_A 76 LFAGVKEAFGGLDYLVHAIAF 96 (261)
T ss_dssp HHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 433221 1369999998753
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=6.6 Score=32.10 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC--CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI--EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG-~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~--~~v~~~~gDi~~~~~~ 108 (249)
.++++|=.|++.| |+...+++.+.. ...+|+.++.+... .. .++.++.+|+++.+..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 74 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHE-----------AGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEI 74 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH-----------TTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHH
Confidence 4578888887643 466666665531 24688888877521 11 2578899999998766
Q ss_pred HHHHHhcCC--CcccEEEeCCCCCC-----CCCCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDG--CKADLVVCDGAPDV-----TGLHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~--~~~DlVlsD~~~~~-----~g~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.+.+.+.. +.+|.++.+..... ....+.+... ..+. ....+..+...++++|+++...
T Consensus 75 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 75 ETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 554433211 46999999875432 1111122211 1111 1234556667778889988643
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=1.6 Score=35.68 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C----CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~----~~~v~~~~gDi~~~~~~~~ 110 (249)
++++||=.| |+|++...+++.+... ...+|+.++.++.. . -.++.++.+|+++.+..+.
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~ 71 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRL----------FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRA 71 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHH----------SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHh----------cCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHH
Confidence 355677555 6788888887766410 13688888887521 0 1357788999999876555
Q ss_pred HHHhcC--CCcccEEEeCCCCCCCCCCCcC-HH---HHHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFD--GCKADLVVCDGAPDVTGLHDMD-EF---VQSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~~~~g~~~~~-~~---~~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+.+. .+.+|+|+.+......+..... .. ...+. ....+..+...++++|++|..
T Consensus 72 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 72 LRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp HHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 443221 1369999998753322211111 11 11111 133455566667777887763
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.30 E-value=0.84 Score=39.74 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=56.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHHh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+++|.+||-.|+ +|+....+.+.... ...+|+++|.++.+. . .+... ..|..+.+..+.+.+.
T Consensus 168 ~~~g~~vlV~Ga-sggiG~~~~~~a~~-----------~Ga~Vi~~~~~~~~~~~~~~~ga~~-~~d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 168 VKAGESVLVHGA-SGGVGLAACQIARA-----------YGLKILGTAGTEEGQKIVLQNGAHE-VFNHREVNYIDKIKKY 234 (351)
T ss_dssp CCTTCEEEEETC-SSHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHTTCSE-EEETTSTTHHHHHHHH
T ss_pred CCCcCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCChhHHHHHHHcCCCE-EEeCCCchHHHHHHHH
Confidence 468899999996 34455444333221 136899999876321 0 12211 1244444444555554
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.....+|+|+... |. ..+..+.++|++||++++
T Consensus 235 ~~~~~~D~vi~~~-----G~-------------~~~~~~~~~l~~~G~iv~ 267 (351)
T 1yb5_A 235 VGEKGIDIIIEML-----AN-------------VNLSKDLSLLSHGGRVIV 267 (351)
T ss_dssp HCTTCEEEEEESC-----HH-------------HHHHHHHHHEEEEEEEEE
T ss_pred cCCCCcEEEEECC-----Ch-------------HHHHHHHHhccCCCEEEE
Confidence 5555799998643 10 134567899999999986
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=89.23 E-value=1.6 Score=37.37 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------C------CCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I------EGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~------~~v~~~~gDi~~~ 105 (249)
.+++||=.| |+|....++++.+-. .+..|++++..+... . .+++++.+|+++.
T Consensus 24 ~~~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 91 (351)
T 3ruf_A 24 SPKTWLITG-VAGFIGSNLLEKLLK-----------LNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDL 91 (351)
T ss_dssp SCCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCH
T ss_pred CCCeEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 457888777 679999888876631 236899999876431 0 6789999999997
Q ss_pred hhHHHHHHhcCCCcccEEEeCCC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
+....+ +. .+|+|+...+
T Consensus 92 ~~~~~~---~~--~~d~Vih~A~ 109 (351)
T 3ruf_A 92 TTCEQV---MK--GVDHVLHQAA 109 (351)
T ss_dssp HHHHHH---TT--TCSEEEECCC
T ss_pred HHHHHH---hc--CCCEEEECCc
Confidence 654433 33 6999998765
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=89.13 E-value=0.6 Score=40.11 Aligned_cols=96 Identities=17% Similarity=0.024 Sum_probs=55.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCC-hhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITN-ARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~-~~~~~~i~~ 113 (249)
+++|.+||-.|++ |+....+++.... ...+|+++|.++.+. . -+.. ...|..+ .+..+.+.+
T Consensus 143 ~~~g~~vlV~Ga~-ggiG~~~~~~~~~-----------~G~~V~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 143 VKGGETVLVSAAA-GAVGSVVGQIAKL-----------KGCKVVGAAGSDEKIAYLKQIGFD-AAFNYKTVNSLEEALKK 209 (333)
T ss_dssp CCSSCEEEEESTT-BHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHTTCS-EEEETTSCSCHHHHHHH
T ss_pred CCCCCEEEEecCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhcCCc-EEEecCCHHHHHHHHHH
Confidence 4688999999973 4455544443221 136899999875321 0 1221 1235554 333334443
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
... +.+|+|+.... . ..+..+.++|++||++++-
T Consensus 210 ~~~-~~~d~vi~~~g-----~-------------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 210 ASP-DGYDCYFDNVG-----G-------------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HCT-TCEEEEEESSC-----H-------------HHHHHHHTTEEEEEEEEEC
T ss_pred HhC-CCCeEEEECCC-----h-------------HHHHHHHHHHhcCCEEEEE
Confidence 333 57999997532 1 1356778999999999863
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=89.08 E-value=4.1 Score=33.76 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC--CC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GC 118 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~--~~ 118 (249)
.+++||=.|+ +|++...+++.+.. .+.+|+.+|.++......+..+.+|+++.+....+.+.+. -+
T Consensus 13 ~~k~vlVTGa-s~GIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (269)
T 3vtz_A 13 TDKVAIVTGG-SSGIGLAVVDALVR-----------YGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYG 80 (269)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHH-----------TTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHH-----------CCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4677887774 56777777776642 3468999998876544466778999999876555443221 14
Q ss_pred cccEEEeCCCC
Q 025715 119 KADLVVCDGAP 129 (249)
Q Consensus 119 ~~DlVlsD~~~ 129 (249)
.+|+++.+...
T Consensus 81 ~iD~lv~nAg~ 91 (269)
T 3vtz_A 81 RIDILVNNAGI 91 (269)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999754
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.96 E-value=6.2 Score=33.74 Aligned_cols=72 Identities=17% Similarity=0.080 Sum_probs=46.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------C--------CCCceEeecCCCChhh
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P--------IEGVIQVQGDITNART 107 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~--------~~~v~~~~gDi~~~~~ 107 (249)
++||=.| |+|+...++++.+-. .+.+|++++.++.. . -.++.++.+|+++.+.
T Consensus 2 ~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (372)
T 1db3_A 2 KVALITG-VTGQDGSYLAEFLLE-----------KGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSN 69 (372)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEECC---------------------CCEEECCCCSSCHHH
T ss_pred CEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHH
Confidence 4566556 578888888776631 23589999876431 1 1367788999999876
Q ss_pred HHHHHHhcCCCcccEEEeCCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
...+.+.. .+|.|+...+.
T Consensus 70 ~~~~~~~~---~~d~vih~A~~ 88 (372)
T 1db3_A 70 LTRILREV---QPDEVYNLGAM 88 (372)
T ss_dssp HHHHHHHH---CCSEEEECCCC
T ss_pred HHHHHHhc---CCCEEEECCcc
Confidence 55544322 58999988754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=88.95 E-value=1 Score=38.98 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=55.2
Q ss_pred ccCCCeEEEEcCC--CChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAA--PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~g--pG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~i 111 (249)
+++|.+||=.|++ -|.....+++..+ .+|++++.++.+. . -+.. .+ |.. .+..+.+
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~G--------------a~Vi~~~~~~~~~~~~~~~ga~~v~--~~~-~~~~~~v 219 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMG--------------AKVIAVVNRTAATEFVKSVGADIVL--PLE-EGWAKAV 219 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--------------CEEEEEESSGGGHHHHHHHTCSEEE--ESS-TTHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHhcCCcEEe--cCc-hhHHHHH
Confidence 4789999998862 2333334455444 6899999876431 0 1221 22 222 2334445
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+...+..+|+|+... |.. .+..+.++|++||++++-
T Consensus 220 ~~~~~~~g~Dvvid~~-----g~~-------------~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 220 REATGGAGVDMVVDPI-----GGP-------------AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HHHTTTSCEEEEEESC-----C---------------CHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCCceEEEECC-----chh-------------HHHHHHHhhcCCCEEEEE
Confidence 5544545799998643 211 245678899999999873
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=4.2 Score=34.30 Aligned_cols=73 Identities=16% Similarity=0.004 Sum_probs=50.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~i 111 (249)
+++||=.| |+|+...++++.+-. .+.+|++++.++... ..++.++.+|+++.+....+
T Consensus 3 ~~~vlVtG-atG~iG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 70 (345)
T 2z1m_A 3 GKRALITG-IRGQDGAYLAKLLLE-----------KGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRT 70 (345)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHH
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHH
Confidence 46777777 578888888776641 236899999876431 13678889999998765554
Q ss_pred HHhcCCCcccEEEeCCCC
Q 025715 112 IRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~ 129 (249)
.+.. .+|.|+...+.
T Consensus 71 ~~~~---~~d~vih~A~~ 85 (345)
T 2z1m_A 71 IEKV---QPDEVYNLAAQ 85 (345)
T ss_dssp HHHH---CCSEEEECCCC
T ss_pred HHhc---CCCEEEECCCC
Confidence 4322 58999988754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=0.86 Score=39.19 Aligned_cols=93 Identities=19% Similarity=0.030 Sum_probs=56.4
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--CC---CCceEeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PI---EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~~---~~v~~~~gDi~~~~~~~~ 110 (249)
+++|++||-.|++ |+.... +++..+ .+|+++|.++.+ .. -+... .-|..+.+..+.
T Consensus 147 ~~~g~~vlI~Ga~-g~iG~~~~~~a~~~G--------------a~Vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 210 (336)
T 4b7c_A 147 PKNGETVVISGAA-GAVGSVAGQIARLKG--------------CRVVGIAGGAEKCRFLVEELGFDG-AIDYKNEDLAAG 210 (336)
T ss_dssp CCTTCEEEESSTT-SHHHHHHHHHHHHTT--------------CEEEEEESSHHHHHHHHHTTCCSE-EEETTTSCHHHH
T ss_pred CCCCCEEEEECCC-CHHHHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHHcCCCE-EEECCCHHHHHH
Confidence 4789999998873 334443 444433 699999987632 01 12211 124444444445
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+.. .+.+|+|+... |. ..+..+.++|++||++++-
T Consensus 211 ~~~~~-~~~~d~vi~~~-----g~-------------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 211 LKREC-PKGIDVFFDNV-----GG-------------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHHHC-TTCEEEEEESS-----CH-------------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHhc-CCCceEEEECC-----Cc-------------chHHHHHHHHhhCCEEEEE
Confidence 55444 45799998643 21 1456788999999999863
|
| >1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=8.7 Score=33.33 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
+|..||=+|+|||.+..+|.+..... +...+.+.+|..+.. ..++++.++ +..+.+....+...+.
T Consensus 75 ~g~~VVYaGsAPG~HI~fL~~lF~~l---------~~~lkwvLiDp~~f~~~Le~~~ni~li~-~ffde~~i~~l~~~~~ 144 (348)
T 1vpt_A 75 DGATVVYIGSAPGTHIRYLRDHFYNL---------GVIIKWMLIDGRHHDPILNGLRDVTLVT-RFVDEEYLRSIKKQLH 144 (348)
T ss_dssp TTCEEEEESCSSCHHHHHHHHHHHHT---------TCCCEEEEEESSCCCGGGTTCTTEEEEE-CCCCHHHHHHHHHHHT
T ss_pred CCCeEEEeCcCCcchHHHHHHHhhhc---------CCceEEEEECCCchhhhhcCCCcEEeeh-hhcCHHHHHHHHHHhc
Confidence 46799999999999999999866410 023688999998863 356776554 5666665555555555
Q ss_pred CCcccEE-EeCCCCC-CCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc-CCCeeEEecCC
Q 025715 117 GCKADLV-VCDGAPD-VTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTFAKPK 193 (249)
Q Consensus 117 ~~~~DlV-lsD~~~~-~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~-~f~~v~~~kP~ 193 (249)
+ -+++ +||.... ..+. ......+.- .++-...+..|+|--.++ | |+.+-...-. +. +.-.-...-|.
T Consensus 145 ~--~~vLfISDIRS~~~~~E--p~~~dll~D-y~lQn~w~~iLkP~aSmL-K-FRlPyp~~~~---~~~yi~dG~~~Lqv 214 (348)
T 1vpt_A 145 P--SKIILISDVASAAGGNE--PSTADLLSN-YALQNVMISILNPVASSL-K-WRCPFPDQWI---KDFYIPHGNKMLQP 214 (348)
T ss_dssp T--SCEEEEECCCC--------CCHHHHHHH-HHHHHHHHHHHCCSEEEE-E-ECCCCGGGCC---CCEEEECCEEECCT
T ss_pred C--CCEEEEEecccCCCCCC--ccHHHHHHH-HHHHHHHHHHhhhHHHhc-c-ccCCCCCCCC---CceEeeCCCEEecc
Confidence 3 3665 7886321 1111 122222111 123344567889886654 3 3332211100 11 11122334466
Q ss_pred CCCCCCceEEEEEee
Q 025715 194 SSRNSSIEAFAVCEN 208 (249)
Q Consensus 194 ~sr~~s~E~y~v~~g 208 (249)
-.++.|+|..++...
T Consensus 215 wap~tStE~RLvv~~ 229 (348)
T 1vpt_A 215 FAPSYSAEMRLLSIY 229 (348)
T ss_dssp TCCTTCCCEEEEEEC
T ss_pred cCCCCcceEEEEEec
Confidence 667788898888754
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.38 E-value=3.5 Score=35.01 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
.+++||=.| |+|....++++.+-.. +....|+++|...... .++++++.+|+++.+....
T Consensus 23 ~~~~vlVtG-atG~iG~~l~~~L~~~---------g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~ 92 (346)
T 4egb_A 23 NAMNILVTG-GAGFIGSNFVHYMLQS---------YETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEH 92 (346)
T ss_dssp -CEEEEEET-TTSHHHHHHHHHHHHH---------CTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHH
T ss_pred CCCeEEEEC-CccHHHHHHHHHHHhh---------CCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHH
Confidence 457888777 6788888887765310 0125888998765221 1578899999999876655
Q ss_pred HHHhcCCCcccEEEeCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~ 129 (249)
+.+. ..+|+|+...+.
T Consensus 93 ~~~~---~~~d~Vih~A~~ 108 (346)
T 4egb_A 93 VIKE---RDVQVIVNFAAE 108 (346)
T ss_dssp HHHH---HTCCEEEECCCC
T ss_pred HHhh---cCCCEEEECCcc
Confidence 5432 359999987654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=0.57 Score=40.21 Aligned_cols=95 Identities=16% Similarity=0.109 Sum_probs=56.6
Q ss_pred ccCCCeEEEEcC-CC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCA-AP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~-gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||=.|+ |+ |.....+++..+ .+|++++.++.+. . -+... .-|..+.+..+.+.
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--------------a~Vi~~~~~~~~~~~~~~~Ga~~-~~~~~~~~~~~~~~ 202 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALG--------------AKLIGTVSSPEKAAHAKALGAWE-TIDYSHEDVAKRVL 202 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT--------------CEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHHH
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHcCCCE-EEeCCCccHHHHHH
Confidence 478999998883 22 333334455544 6899999876321 0 12211 12333444445555
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+... |. ..+..+.++|++||++++-
T Consensus 203 ~~~~~~g~Dvvid~~-----g~-------------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 203 ELTDGKKCPVVYDGV-----GQ-------------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp HHTTTCCEEEEEESS-----CG-------------GGHHHHHTTEEEEEEEEEC
T ss_pred HHhCCCCceEEEECC-----Ch-------------HHHHHHHHHhcCCCEEEEE
Confidence 555556899998643 21 1345678999999999974
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=0.63 Score=40.07 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=56.3
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i 111 (249)
+++|.+||=.|+ .|+.... +++..+ .+|+++|.++.+. . -+... .-|..+.+..+.+
T Consensus 146 ~~~g~~vlV~Ga-~g~iG~~~~~~a~~~G--------------a~Vi~~~~~~~~~~~~~~~ga~~-~~~~~~~~~~~~~ 209 (334)
T 3qwb_A 146 VKKGDYVLLFAA-AGGVGLILNQLLKMKG--------------AHTIAVASTDEKLKIAKEYGAEY-LINASKEDILRQV 209 (334)
T ss_dssp CCTTCEEEESST-TBHHHHHHHHHHHHTT--------------CEEEEEESSHHHHHHHHHTTCSE-EEETTTSCHHHHH
T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHcCCcE-EEeCCCchHHHHH
Confidence 478999999984 3444444 344433 6899999876321 0 12211 1233334444555
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+...+..+|+|+... |. ..+..+.++|++||++++-
T Consensus 210 ~~~~~~~g~D~vid~~-----g~-------------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 210 LKFTNGKGVDASFDSV-----GK-------------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp HHHTTTSCEEEEEECC-----GG-------------GGHHHHHHHEEEEEEEEEC
T ss_pred HHHhCCCCceEEEECC-----Ch-------------HHHHHHHHHhccCCEEEEE
Confidence 5555556799998643 21 1355678899999999873
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.89 E-value=7.8 Score=33.15 Aligned_cols=75 Identities=12% Similarity=-0.005 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC------------CC-----CCCceEeecCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------------AP-----IEGVIQVQGDIT 103 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~------------~~-----~~~v~~~~gDi~ 103 (249)
.+++||=.| |+|....++++.+-.. +.+.+|+++|.++. .. -.++.++.+|++
T Consensus 9 ~~~~vlVTG-atG~IG~~l~~~L~~~---------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 78 (362)
T 3sxp_A 9 ENQTILITG-GAGFVGSNLAFHFQEN---------HPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADIN 78 (362)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHH---------CTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTT
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHhh---------CCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCC
Confidence 457888777 7899999888776410 01468999998653 11 135688999999
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCC
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
+.+....+ ....+|+|+...+.
T Consensus 79 d~~~~~~~----~~~~~D~vih~A~~ 100 (362)
T 3sxp_A 79 NPLDLRRL----EKLHFDYLFHQAAV 100 (362)
T ss_dssp CHHHHHHH----TTSCCSEEEECCCC
T ss_pred CHHHHHHh----hccCCCEEEECCcc
Confidence 98765443 23579999988763
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.52 E-value=6 Score=32.65 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------------CCCCceEe
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------------PIEGVIQV 98 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------------~~~~v~~~ 98 (249)
.|+++|=-|++ |++...+++.+.. ...+|+.+|.+... .-.++.++
T Consensus 9 ~gk~vlVTGas-~gIG~~ia~~l~~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (287)
T 3pxx_A 9 QDKVVLVTGGA-RGQGRSHAVKLAE-----------EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTA 76 (287)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHH-----------CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEE
Confidence 35677777754 6777777776542 34689999887210 01256788
Q ss_pred ecCCCChhhHHHHHHhcC--CCcccEEEeCCCCCCCCCC-CcCHH-HHHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 99 QGDITNARTAEVVIRHFD--GCKADLVVCDGAPDVTGLH-DMDEF-VQSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~--~~~~DlVlsD~~~~~~g~~-~~~~~-~~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+|+++.+....+.+.+. -+.+|+++.+......+.. +.+.+ ...+. ....+..+...++++|+++..
T Consensus 77 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 77 EVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 999999876555443221 1379999999754322211 11211 11221 133455566677788988763
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=87.40 E-value=6.1 Score=32.41 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=50.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-CCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
++||=.| |+|+...++++.+.. ...+|+++|.++... -.++.++.+|+++.+....+. . .+|
T Consensus 4 k~vlVTG-asg~IG~~la~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~--~~D 66 (267)
T 3rft_A 4 KRLLVTG-AAGQLGRVMRERLAP-----------MAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMV---A--GCD 66 (267)
T ss_dssp EEEEEES-TTSHHHHHHHHHTGG-----------GEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHH---T--TCS
T ss_pred CEEEEEC-CCCHHHHHHHHHHHh-----------cCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHH---c--CCC
Confidence 4566555 578899998887752 235899999987553 357888999999987655543 2 689
Q ss_pred EEEeCCCC
Q 025715 122 LVVCDGAP 129 (249)
Q Consensus 122 lVlsD~~~ 129 (249)
+|+.+...
T Consensus 67 ~vi~~Ag~ 74 (267)
T 3rft_A 67 GIVHLGGI 74 (267)
T ss_dssp EEEECCSC
T ss_pred EEEECCCC
Confidence 99998765
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.36 E-value=0.54 Score=40.33 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=56.5
Q ss_pred ccCCCeEEEEcCCCChHHHHH---HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i 111 (249)
+++|.+||-.|+ .|+....+ ++..+ .+|+++|.++.+. . .+... ..|..+.+..+.+
T Consensus 138 ~~~g~~vlV~Ga-~ggiG~~~~~~a~~~G--------------~~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~ 201 (327)
T 1qor_A 138 IKPDEQFLFHAA-AGGVGLIACQWAKALG--------------AKLIGTVGTAQKAQSALKAGAWQ-VINYREEDLVERL 201 (327)
T ss_dssp CCTTCEEEESST-TBHHHHHHHHHHHHHT--------------CEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHH
T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHcCCCE-EEECCCccHHHHH
Confidence 468899999984 34444444 33333 6899999875321 0 12211 1244444444555
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+......+|+|+..... ..+..+.++|++||++++.
T Consensus 202 ~~~~~~~~~D~vi~~~g~------------------~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 202 KEITGGKKVRVVYDSVGR------------------DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp HHHTTTCCEEEEEECSCG------------------GGHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCCceEEEECCch------------------HHHHHHHHHhcCCCEEEEE
Confidence 554444579999975421 1355678899999999863
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=87.23 E-value=8.4 Score=31.59 Aligned_cols=114 Identities=15% Similarity=0.052 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC--CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI--EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG-~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~--~~v~~~~gDi~~~~~~ 108 (249)
.|+++|=-|++.+ |+...+++.+.. ...+|+.+|+++.. .. .++.+++.|+++.+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~-----------~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 73 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQ-----------LGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEV 73 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHH-----------TTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHH
Confidence 4678888887653 677777766542 34789999987632 11 3577889999998765
Q ss_pred HHHH----HhcCCCcccEEEeCCCCCCC----CC-CCcC--HHH-HHHH----HHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVI----RHFDGCKADLVVCDGAPDVT----GL-HDMD--EFV-QSQL----ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~----~~~~~~~~DlVlsD~~~~~~----g~-~~~~--~~~-~~~l----~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.+. +.+ ++.|.++.+...... +. .+.. .+. ...+ .......+...++.+|++|...
T Consensus 74 ~~~~~~~~~~~--G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis 146 (256)
T 4fs3_A 74 INGFEQIGKDV--GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT 146 (256)
T ss_dssp HHHHHHHHHHH--CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred HHHHHHHHHHh--CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 5443 333 479999988643211 11 1111 111 1111 1223445566788899988643
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=86.99 E-value=1 Score=38.67 Aligned_cols=95 Identities=19% Similarity=0.070 Sum_probs=55.9
Q ss_pred ccCCCeEEEEcC--CCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCA--APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~--gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=.|+ |-|.....++...+ .+|+++|.++.+. . -+... ..|..+.+..+.+.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--------------~~Vi~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~i~ 207 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLG--------------ATVIGTVSTEEKAETARKLGCHH-TINYSTQDFAEVVR 207 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTT--------------CEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHcCCCE-EEECCCHHHHHHHH
Confidence 468899999985 23333333444433 6899999886321 1 12211 12444444444555
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+......+|+|+.... . . .+..+.++|++||++++-
T Consensus 208 ~~~~~~~~d~vi~~~g-----~---~----------~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 208 EITGGKGVDVVYDSIG-----K---D----------TLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp HHHTTCCEEEEEECSC-----T---T----------THHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCCeEEEECCc-----H---H----------HHHHHHHhhccCCEEEEE
Confidence 4444457999996532 1 1 245678899999998863
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=3.4 Score=35.32 Aligned_cols=73 Identities=23% Similarity=0.155 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~~i 111 (249)
.+++||=.| |+|....++++.+-. .+.+|++++.++... ..++.++.+|+++.+....+
T Consensus 8 ~~~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 75 (357)
T 1rkx_A 8 QGKRVFVTG-HTGFKGGWLSLWLQT-----------MGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLES 75 (357)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHh-----------CCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHH
Confidence 357888777 688999888776641 236899999876431 23688899999998765554
Q ss_pred HHhcCCCcccEEEeCCC
Q 025715 112 IRHFDGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~ 128 (249)
.+.. .+|+|+...+
T Consensus 76 ~~~~---~~d~vih~A~ 89 (357)
T 1rkx_A 76 IREF---QPEIVFHMAA 89 (357)
T ss_dssp HHHH---CCSEEEECCS
T ss_pred HHhc---CCCEEEECCC
Confidence 4322 5899998765
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=86.77 E-value=12 Score=31.97 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.|..|+=+|||||.....++++.+.. +...+.+-+|..+.. ..++|..++. ..+...+..+.+.+.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~---------f~~ikWvLiDPap~~~~l~~~~NV~li~~-fvde~dl~~l~~~~~ 129 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNL---------GVIIKWMLIDGRHHDPILNGLRDVTLVTR-FVDEEYLRSIKKQLH 129 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHT---------TCCCEEEEEESSCCCGGGTTCTTEEEEEC-CCCHHHHHHHHHHHT
T ss_pred CCcEEEEecccCccHHHHHHHhchhh---------CCCeEEEEEcCCcchhhhcCCCcEEEEec-cCCHHHHHHHHHhcc
Confidence 36799999999999999999876410 023588999998764 4577876665 446554444444333
Q ss_pred CCcccEE-EeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc-CCCeeEEecCCC
Q 025715 117 GCKADLV-VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTFAKPKS 194 (249)
Q Consensus 117 ~~~~DlV-lsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~-~f~~v~~~kP~~ 194 (249)
..+++ +||....-.+.. ......+.-. ++-...+..|+|--.++ | |+.+-...-. +. +.-.-...-|.-
T Consensus 130 --~~~iLLISDIRS~r~~~e-p~t~~ll~Dy-~lQ~~w~~~LkP~aS~L-K-FR~P~p~~~~---~~~y~~dG~~~Lq~w 200 (307)
T 3mag_A 130 --PSKIILISDVRSKRGGNE-PSTADLLSNY-ALQNVMISILNPVASSL-K-WRCPFPDQWI---KDFYIPHGNKMLQPF 200 (307)
T ss_dssp --TSCEEEEECCCC-------CCHHHHHHHH-HHHHHHHHHHCCSEEEE-E-ECCCCGGGCC---CCEEEECCEEECCTT
T ss_pred --CCCEEEEEEecCCCCCCC-ccHHHHHHHH-HHHHHHHHHhhhHHHhc-c-ccCCCCcCCC---cceEecCCCEEeccc
Confidence 45555 788643322211 1222222211 23344557899986654 3 3332211100 00 111122334555
Q ss_pred CCCCCceEEEEEeecc
Q 025715 195 SRNSSIEAFAVCENYF 210 (249)
Q Consensus 195 sr~~s~E~y~v~~g~~ 210 (249)
....|+|..++..+-.
T Consensus 201 ~p~~StE~RL~v~~~~ 216 (307)
T 3mag_A 201 APSYSAEMRLLSIYTG 216 (307)
T ss_dssp CCTTCCCEEEEEECCT
T ss_pred CCCCcceEEEEEecCC
Confidence 5677889877775533
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=86.72 E-value=10 Score=31.66 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.|+++|=.|+ .|++...+++++.. ...+|+.++.+... .-.++.++.+|+++.+..+
T Consensus 46 ~gk~vlVTGa-s~GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 113 (291)
T 3ijr_A 46 KGKNVLITGG-DSGIGRAVSIAFAK-----------EGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCK 113 (291)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 3567887785 56777777776642 24688888887631 0135778899999987655
Q ss_pred HHHHhcC--CCcccEEEeCCCCCCC--CCCCcCHH---HHHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFD--GCKADLVVCDGAPDVT--GLHDMDEF---VQSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~~~~~--g~~~~~~~---~~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+... -+.+|+++.+...... ...+.+.. ...+. ....++.+...++++|++|..
T Consensus 114 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 114 DIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 4433221 1479999998643211 11111211 11111 133455666777889988763
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=86.48 E-value=9.8 Score=31.61 Aligned_cols=76 Identities=11% Similarity=-0.018 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC--CC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GC 118 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~--~~ 118 (249)
.|+++|=-|+ .+|+...+++++.. ...+|+..|.+.........++++|+++.+..+.+.+... -+
T Consensus 10 ~GK~alVTGa-s~GIG~aia~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 77 (261)
T 4h15_A 10 RGKRALITAG-TKGAGAATVSLFLE-----------LGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLG 77 (261)
T ss_dssp TTCEEEESCC-SSHHHHHHHHHHHH-----------TTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEecc-CcHHHHHHHHHHHH-----------cCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5677776675 45677777776642 3578999999876655555678999999876555443221 15
Q ss_pred cccEEEeCCC
Q 025715 119 KADLVVCDGA 128 (249)
Q Consensus 119 ~~DlVlsD~~ 128 (249)
++|+++.+..
T Consensus 78 ~iDilVnnAG 87 (261)
T 4h15_A 78 GVDVIVHMLG 87 (261)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999864
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=86.48 E-value=6.8 Score=31.78 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=45.6
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEE
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlV 123 (249)
+||=.| |+|+...++++.+. ...+|++++.++... ++ +.+|+++.+....+.+.. .+|.|
T Consensus 2 ~ilVtG-atG~iG~~l~~~L~------------~g~~V~~~~r~~~~~-~~---~~~Dl~~~~~~~~~~~~~---~~d~v 61 (273)
T 2ggs_A 2 RTLITG-ASGQLGIELSRLLS------------ERHEVIKVYNSSEIQ-GG---YKLDLTDFPRLEDFIIKK---RPDVI 61 (273)
T ss_dssp CEEEET-TTSHHHHHHHHHHT------------TTSCEEEEESSSCCT-TC---EECCTTSHHHHHHHHHHH---CCSEE
T ss_pred EEEEEC-CCChhHHHHHHHHh------------cCCeEEEecCCCcCC-CC---ceeccCCHHHHHHHHHhc---CCCEE
Confidence 455555 57999999988875 236899998876332 33 679999987655544322 58999
Q ss_pred EeCCCC
Q 025715 124 VCDGAP 129 (249)
Q Consensus 124 lsD~~~ 129 (249)
+...+.
T Consensus 62 i~~a~~ 67 (273)
T 2ggs_A 62 INAAAM 67 (273)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 987653
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=0.65 Score=40.61 Aligned_cols=89 Identities=10% Similarity=0.050 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC---CCC--C--CCceEeecCCCChhhHHHHHHh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP---MAP--I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~---~~~--~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
|.+||=.|+ |+....+.+.... ...+|+++|.++ .+. . -+...+ | .+ +..+.+.+
T Consensus 181 g~~VlV~Ga--G~vG~~~~q~a~~-----------~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v--~-~~-~~~~~~~~- 242 (366)
T 2cdc_A 181 CRKVLVVGT--GPIGVLFTLLFRT-----------YGLEVWMANRREPTEVEQTVIEETKTNYY--N-SS-NGYDKLKD- 242 (366)
T ss_dssp TCEEEEESC--HHHHHHHHHHHHH-----------HTCEEEEEESSCCCHHHHHHHHHHTCEEE--E-CT-TCSHHHHH-
T ss_pred CCEEEEECC--CHHHHHHHHHHHh-----------CCCEEEEEeCCccchHHHHHHHHhCCcee--c-hH-HHHHHHHH-
Confidence 899999997 6666654443210 125999999886 331 1 133333 4 33 33333433
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHH-HHHHHhccCCCEEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGL-TVVTHVLKEGGKFIAK 166 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l-~~a~~~Lk~gG~lv~k 166 (249)
.. +.+|+|+... |.. ..+ ..+.++|+++|++++-
T Consensus 243 ~~-~~~d~vid~~-----g~~------------~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 243 SV-GKFDVIIDAT-----GAD------------VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp HH-CCEEEEEECC-----CCC------------THHHHHHGGGEEEEEEEEEC
T ss_pred hC-CCCCEEEECC-----CCh------------HHHHHHHHHHHhcCCEEEEE
Confidence 22 5799998643 211 134 6778999999999863
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=86.31 E-value=13 Score=30.56 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC--CCc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~--~~~ 119 (249)
++++|=.|+ +|+....+++.+.. ...+|+.++.++.. -.++.++.+|+++.+..+.+.+.+. -+.
T Consensus 8 ~k~vlVTGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 74 (264)
T 2dtx_A 8 DKVVIVTGA-SMGIGRAIAERFVD-----------EGSKVIDLSIHDPG-EAKYDHIECDVTNPDQVKASIDHIFKEYGS 74 (264)
T ss_dssp TCEEEEESC-SSHHHHHHHHHHHH-----------TTCEEEEEESSCCC-SCSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHH-----------CCCEEEEEecCccc-CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 567777774 57777777776642 24689999987654 2457788999999876554433211 136
Q ss_pred ccEEEeCCCC
Q 025715 120 ADLVVCDGAP 129 (249)
Q Consensus 120 ~DlVlsD~~~ 129 (249)
+|+++.+...
T Consensus 75 iD~lv~~Ag~ 84 (264)
T 2dtx_A 75 ISVLVNNAGI 84 (264)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=0.81 Score=39.61 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=55.0
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHh-cCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKL-YLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~-~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~ 110 (249)
+++|.+||-.|+| |+.... +++.. + .+|+++|.++.+. . -+... ..|..+.+..+.
T Consensus 168 ~~~g~~vlV~Gag-g~iG~~~~~~a~~~~G--------------a~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 231 (347)
T 1jvb_A 168 LDPTKTLLVVGAG-GGLGTMAVQIAKAVSG--------------ATIIGVDVREEAVEAAKRAGADY-VINASMQDPLAE 231 (347)
T ss_dssp CCTTCEEEEETTT-SHHHHHHHHHHHHHTC--------------CEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHH
T ss_pred CCCCCEEEEECCC-ccHHHHHHHHHHHcCC--------------CeEEEEcCCHHHHHHHHHhCCCE-EecCCCccHHHH
Confidence 4689999999986 334333 44444 4 6899999876321 1 12211 123333333333
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.+....+.+|+|+.... . ...+..+.++|+++|++++
T Consensus 232 ~~~~~~~~~~d~vi~~~g-----~------------~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 232 IRRITESKGVDAVIDLNN-----S------------EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp HHHHTTTSCEEEEEESCC-----C------------HHHHTTGGGGEEEEEEEEE
T ss_pred HHHHhcCCCceEEEECCC-----C------------HHHHHHHHHHHhcCCEEEE
Confidence 433332147999986532 1 0245677899999999987
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.12 E-value=6.2 Score=31.51 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCC--CeEEEecCCCCCC-------CCCceEeecCCCChhhHHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL--PLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~--~~vvavDi~~~~~-------~~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++||=.| |+|+....+++.+.. .. .+|++++.++... -.++.++.+|+++.+....+.
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~-----------~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 70 (250)
T 1yo6_A 3 PGSVVVTG-ANRGIGLGLVQQLVK-----------DKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFV 70 (250)
T ss_dssp CSEEEESS-CSSHHHHHHHHHHHT-----------CTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEec-CCchHHHHHHHHHHh-----------cCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHH
Confidence 35677666 568888888887652 23 6899998875321 135778899999987655544
Q ss_pred Hhc----CCCcccEEEeCCCC
Q 025715 113 RHF----DGCKADLVVCDGAP 129 (249)
Q Consensus 113 ~~~----~~~~~DlVlsD~~~ 129 (249)
+.+ ....+|+|+.+...
T Consensus 71 ~~~~~~~g~~~id~li~~Ag~ 91 (250)
T 1yo6_A 71 SKVGEIVGSDGLSLLINNAGV 91 (250)
T ss_dssp HHHHHHHGGGCCCEEEECCCC
T ss_pred HHHHHhcCCCCCcEEEECCcc
Confidence 332 21269999998753
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=86.01 E-value=12 Score=30.25 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC--CCc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~--~~~ 119 (249)
+++||=.|++ |+....+++.+.. .+.+|+.+|.++.... . ..+..|+++.+..+.+.+.+. .+.
T Consensus 22 ~k~vlITGas-~gIG~~la~~l~~-----------~G~~V~~~~r~~~~~~-~-~~~~~d~~d~~~v~~~~~~~~~~~g~ 87 (251)
T 3orf_A 22 SKNILVLGGS-GALGAEVVKFFKS-----------KSWNTISIDFRENPNA-D-HSFTIKDSGEEEIKSVIEKINSKSIK 87 (251)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESSCCTTS-S-EEEECSCSSHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCC-CHHHHHHHHHHHH-----------CCCEEEEEeCCccccc-c-cceEEEeCCHHHHHHHHHHHHHHcCC
Confidence 5677777754 6777777776642 2468999998875422 1 245678888776655554432 257
Q ss_pred ccEEEeCCCCCCCCC--CCcCHHH---HHH----HHHHHHHHHHHhccCCCEEEEE
Q 025715 120 ADLVVCDGAPDVTGL--HDMDEFV---QSQ----LILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 120 ~DlVlsD~~~~~~g~--~~~~~~~---~~~----l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+|+|+.+......+. ...+... ..+ -....++.+...++++|++|..
T Consensus 88 iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 143 (251)
T 3orf_A 88 VDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLT 143 (251)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEE
Confidence 999999875322211 1111111 111 1133455666677788888864
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=85.96 E-value=5.5 Score=32.80 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---C--CCceEeecCCCChhhHHHHHHhc
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---I--EGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---~--~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.++++|=.| |+|++...+++.+.. .+.+|+.+|.++... + .++.++.+|+++.+....+.+.+
T Consensus 26 ~~k~vlVTG-as~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 26 SSAPILITG-ASQRVGLHCALRLLE-----------HGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp -CCCEEESS-TTSHHHHHHHHHHHH-----------TTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHH
Confidence 356777777 457778887776642 246899999887431 1 25788899999987655544332
Q ss_pred C--CCcccEEEeCCCCC
Q 025715 116 D--GCKADLVVCDGAPD 130 (249)
Q Consensus 116 ~--~~~~DlVlsD~~~~ 130 (249)
. .+.+|+++.+....
T Consensus 94 ~~~~g~iD~lv~nAg~~ 110 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEW 110 (260)
T ss_dssp HHHCSCCSEEEECCCCC
T ss_pred HHhcCCCCEEEECCCcc
Confidence 1 14799999997543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.89 E-value=3.4 Score=32.73 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=50.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C-CCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I-EGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~-~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
++||=.| |+|....++++.+-. .+.+|++++.++... + .+++++.+|+++.+..... +. .
T Consensus 5 ~~ilItG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~~--~ 67 (227)
T 3dhn_A 5 KKIVLIG-ASGFVGSALLNEALN-----------RGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEV---CK--G 67 (227)
T ss_dssp CEEEEET-CCHHHHHHHHHHHHT-----------TTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHH---HT--T
T ss_pred CEEEEEc-CCchHHHHHHHHHHH-----------CCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHH---hc--C
Confidence 4677666 678888888877642 246899999986432 2 6789999999997765443 33 5
Q ss_pred ccEEEeCCCC
Q 025715 120 ADLVVCDGAP 129 (249)
Q Consensus 120 ~DlVlsD~~~ 129 (249)
+|.|+....+
T Consensus 68 ~d~vi~~a~~ 77 (227)
T 3dhn_A 68 ADAVISAFNP 77 (227)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEeCcC
Confidence 8999987654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=0.87 Score=39.25 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=53.6
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--C---CCCceEeecCCCCh-hhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P---IEGVIQVQGDITNA-RTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~---~~~v~~~~gDi~~~-~~~~~i~ 112 (249)
+++|.+||-.|+ +|+....+.+.... ...+|+++|.++.+ . --+... ..|..+. +..+.+.
T Consensus 153 ~~~g~~vlI~Ga-~g~iG~~~~~~a~~-----------~G~~V~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 153 PKEGETVYVSAA-SGAVGQLVGQLAKM-----------MGCYVVGSAGSKEKVDLLKTKFGFDD-AFNYKEESDLTAALK 219 (345)
T ss_dssp CCTTCEEEESST-TSHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHTSCCSE-EEETTSCSCSHHHHH
T ss_pred CCCCCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHcCCce-EEecCCHHHHHHHHH
Confidence 468999999996 34444443332210 12689999987532 0 113221 1244332 2223333
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.. .+.+|+|+... |. ..+..+.++|++||++++
T Consensus 220 ~~~-~~~~d~vi~~~-----g~-------------~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 220 RCF-PNGIDIYFENV-----GG-------------KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp HHC-TTCEEEEEESS-----CH-------------HHHHHHHTTEEEEEEEEE
T ss_pred HHh-CCCCcEEEECC-----CH-------------HHHHHHHHHHhcCCEEEE
Confidence 322 35799998643 21 135677899999999986
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=85.38 E-value=14 Score=30.43 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------------CCCceEeecCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------------IEGVIQVQGDIT 103 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------------~~~v~~~~gDi~ 103 (249)
.++++|=.|++ |++...+++.+.. ...+|+.++.+.... -.++.++..|++
T Consensus 5 ~~k~~lVTGas-~GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 72 (274)
T 3e03_A 5 SGKTLFITGAS-RGIGLAIALRAAR-----------DGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIR 72 (274)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTT
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHH-----------CCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 45677777765 6777777766542 246899998876320 124567899999
Q ss_pred ChhhHHHHHHhcCC--CcccEEEeCCCC
Q 025715 104 NARTAEVVIRHFDG--CKADLVVCDGAP 129 (249)
Q Consensus 104 ~~~~~~~i~~~~~~--~~~DlVlsD~~~ 129 (249)
+.+..+.+.+.+.. +.+|+++.+...
T Consensus 73 ~~~~v~~~~~~~~~~~g~iD~lvnnAG~ 100 (274)
T 3e03_A 73 EEDQVRAAVAATVDTFGGIDILVNNASA 100 (274)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 98766554433211 479999999754
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=85.22 E-value=8 Score=33.39 Aligned_cols=74 Identities=20% Similarity=0.044 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhc-CCCCCCCCCCCCCCCeEEEecCCCCCC------------------------CCC--
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLY-LPAKLSPDSREGDLPLIVAIDLQPMAP------------------------IEG-- 94 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~-~~~~~~~~~~~~~~~~vvavDi~~~~~------------------------~~~-- 94 (249)
+++||=.| |+|....++++.+- . .+.+|++++...... ..+
T Consensus 2 ~m~vlVTG-atG~iG~~l~~~L~~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (397)
T 1gy8_A 2 HMRVLVCG-GAGYIGSHFVRALLRD-----------TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADR 69 (397)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHH-----------CCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTC
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHh-----------CCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCc
Confidence 35777666 67888888877553 2 236899998764321 124
Q ss_pred -ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCC
Q 025715 95 -VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 95 -v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
+.++.+|+++.+.+..+.+.+ +.+|+|+...+.
T Consensus 70 ~~~~~~~Dl~d~~~~~~~~~~~--~~~d~vih~A~~ 103 (397)
T 1gy8_A 70 YAALEVGDVRNEDFLNGVFTRH--GPIDAVVHMCAF 103 (397)
T ss_dssp CCEEEESCTTCHHHHHHHHHHS--CCCCEEEECCCC
T ss_pred eEEEEECCCCCHHHHHHHHHhc--CCCCEEEECCCc
Confidence 788999999987665554432 249999998754
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=85.02 E-value=7.4 Score=31.30 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.| |+|+....+++.+.. .+.+|+++|.++... -.++.++.+|+++.+..+.
T Consensus 10 ~~~~vlVtG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 77 (255)
T 1fmc_A 10 DGKCAIITG-AGAGIGKEIAITFAT-----------AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSA 77 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHT-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHH
Confidence 356777666 678888888887642 246899999875310 1356778899999876555
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... .+.+|.|+.+...
T Consensus 78 ~~~~~~~~~~~~d~vi~~Ag~ 98 (255)
T 1fmc_A 78 LADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 443211 1369999998753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=85.01 E-value=1.1 Score=38.84 Aligned_cols=97 Identities=8% Similarity=-0.005 Sum_probs=56.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHHh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+++|.+||-.|+ .|+....+.+.... ...+|+++|.++.+. . -+... ..|..+.+..+.+.+.
T Consensus 160 ~~~g~~vlV~Ga-~ggiG~~~~~~a~~-----------~Ga~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 226 (354)
T 2j8z_A 160 VQAGDYVLIHAG-LSGVGTAAIQLTRM-----------AGAIPLVTAGSQKKLQMAEKLGAAA-GFNYKKEDFSEATLKF 226 (354)
T ss_dssp CCTTCEEEESST-TSHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHTCSE-EEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECC-ccHHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHcCCcE-EEecCChHHHHHHHHH
Confidence 468899998884 34555544443221 136899999876321 1 12211 1244444444555554
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.....+|+|+... |.. .+..+.++|++||++++.
T Consensus 227 ~~~~~~d~vi~~~-----G~~-------------~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 227 TKGAGVNLILDCI-----GGS-------------YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TTTSCEEEEEESS-----CGG-------------GHHHHHHHEEEEEEEEEC
T ss_pred hcCCCceEEEECC-----Cch-------------HHHHHHHhccCCCEEEEE
Confidence 4445799998653 210 244567899999999873
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.98 E-value=14 Score=29.88 Aligned_cols=77 Identities=12% Similarity=-0.060 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC--CC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GC 118 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~--~~ 118 (249)
.++++|=.| |+|+....+++.+.. ...+|+.++.++...-.++..+.+|+++.+....+.+... -+
T Consensus 6 ~~k~vlVTG-as~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 73 (250)
T 2fwm_X 6 SGKNVWVTG-AGKGIGYATALAFVE-----------AGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETE 73 (250)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHH-----------TTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHH-----------CCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356777777 457788887776642 2468999998764322247788999999876555443221 14
Q ss_pred cccEEEeCCCC
Q 025715 119 KADLVVCDGAP 129 (249)
Q Consensus 119 ~~DlVlsD~~~ 129 (249)
.+|+++.+...
T Consensus 74 ~id~lv~~Ag~ 84 (250)
T 2fwm_X 74 RLDALVNAAGI 84 (250)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999998754
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=84.89 E-value=5.5 Score=33.71 Aligned_cols=72 Identities=17% Similarity=-0.012 Sum_probs=48.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C-----------CCCceEeecCCCCh
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-----------IEGVIQVQGDITNA 105 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~-----------~~~v~~~~gDi~~~ 105 (249)
++||=.| |+|....++++.+-. .+.+|+++|..... . -.++.++.+|+++.
T Consensus 3 ~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~ 70 (348)
T 1ek6_A 3 EKVLVTG-GAGYIGSHTVLELLE-----------AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQ 70 (348)
T ss_dssp SEEEEET-TTSHHHHHHHHHHHH-----------TTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCH
T ss_pred CEEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCH
Confidence 4666666 678888888776631 23589999875422 0 13678899999998
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
+....+.+. ..+|.|+...+.
T Consensus 71 ~~~~~~~~~---~~~d~vih~A~~ 91 (348)
T 1ek6_A 71 GALQRLFKK---YSFMAVIHFAGL 91 (348)
T ss_dssp HHHHHHHHH---CCEEEEEECCSC
T ss_pred HHHHHHHHh---cCCCEEEECCCC
Confidence 765555432 269999987653
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=84.79 E-value=6 Score=32.87 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|++ |++...+++.+.. ...+|+.++.++... -.++.++++|+++.+..+.
T Consensus 31 ~gk~~lVTGas-~GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~ 98 (276)
T 3r1i_A 31 SGKRALITGAS-TGIGKKVALAYAE-----------AGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRG 98 (276)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH-----------TTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 45677777755 7777777776642 246899999876431 1257788999999876555
Q ss_pred HHHhcCC--CcccEEEeCCCC
Q 025715 111 VIRHFDG--CKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~~--~~~DlVlsD~~~ 129 (249)
+.+.+.. +.+|+++.+...
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 99 MLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 4433211 379999999754
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=84.73 E-value=5.7 Score=32.48 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++++|=.| |+|+....+++++.. ...+|+.+|.++.. .+ .++.++++|+++.+....+.+
T Consensus 7 ~~k~vlVTG-as~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 7 EGKSALITG-SARGIGRAFAEAYVR-----------EGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHH
Confidence 356777777 557788887776642 24689999987532 11 356788999999876554433
Q ss_pred hcC--CCcccEEEeCCCC
Q 025715 114 HFD--GCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~~ 129 (249)
... -+.+|+++.+...
T Consensus 75 ~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 75 ATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHSSSCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 211 1479999999754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=84.46 E-value=4.1 Score=35.29 Aligned_cols=72 Identities=17% Similarity=0.020 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCC-CeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL-PLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~-~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.+++||=.| |+|....++++.+-. .+ ..|++++.++... .++++++.+|+++.+... +
T Consensus 31 ~~~~ilVtG-atG~iG~~l~~~L~~-----------~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~---~ 95 (377)
T 2q1s_A 31 ANTNVMVVG-GAGFVGSNLVKRLLE-----------LGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLA---S 95 (377)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHH-----------TTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHH---H
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHH-----------cCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHH---H
Confidence 457888777 578888888776641 23 6899999876432 247888999999976433 2
Q ss_pred hcCCCcccEEEeCCCC
Q 025715 114 HFDGCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~ 129 (249)
.+. .+|.|+...+.
T Consensus 96 ~~~--~~d~Vih~A~~ 109 (377)
T 2q1s_A 96 LQD--EYDYVFHLATY 109 (377)
T ss_dssp CCS--CCSEEEECCCC
T ss_pred Hhh--CCCEEEECCCc
Confidence 233 69999987653
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=84.41 E-value=12 Score=32.27 Aligned_cols=72 Identities=15% Similarity=0.010 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
.+++||=.| |+|....++++.+-. .+.+|++++.++... ..+++++.+|+++.+....+. .
T Consensus 28 ~~~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~---~ 92 (379)
T 2c5a_A 28 ENLKISITG-AGGFIASHIARRLKH-----------EGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVT---E 92 (379)
T ss_dssp SCCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHH---T
T ss_pred cCCeEEEEC-CccHHHHHHHHHHHH-----------CCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHh---C
Confidence 456888777 578888888776631 236899999876432 247888999999976544433 2
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
.+|.|+...+.
T Consensus 93 --~~d~Vih~A~~ 103 (379)
T 2c5a_A 93 --GVDHVFNLAAD 103 (379)
T ss_dssp --TCSEEEECCCC
T ss_pred --CCCEEEECcee
Confidence 69999987653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=84.40 E-value=4.1 Score=33.41 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C-CCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I-EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~-~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.|+++|=.|+ +|++...+++.+.. ...+|+.+|.++... + .++.++.+|+++.+..+.+.+
T Consensus 7 ~gk~~lVTGa-s~gIG~a~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (255)
T 4eso_A 7 QGKKAIVIGG-THGMGLATVRRLVE-----------GGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGA 74 (255)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHH
Confidence 4567887775 56777777776642 346899999876321 1 357788999999876555443
Q ss_pred hcC--CCcccEEEeCCCCCCCC-CCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFD--GCKADLVVCDGAPDVTG-LHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~~~~~g-~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
... -+.+|+++.+......+ ..+.+... ..+. ....++.+...++++|++|..
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 75 AAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp HHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 221 14799999987533211 11112211 1111 123455556677788988763
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.40 E-value=14 Score=30.41 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------C----CCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P----IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~----~~~v~~~~gDi~~~~~~~ 109 (249)
.|+++|=.|++ |++...+++.+.. .+.+|+.++..... . -..+.++.+|+++.+..+
T Consensus 30 ~gk~~lVTGas-~GIG~aia~~la~-----------~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~ 97 (271)
T 3v2g_A 30 AGKTAFVTGGS-RGIGAAIAKRLAL-----------EGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIE 97 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 46788888865 6777777776642 24678888765421 0 135678899999987655
Q ss_pred HHHHhcC--CCcccEEEeCCCCCCCC-CCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFD--GCKADLVVCDGAPDVTG-LHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~~~~~g-~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+... -+.+|+++.+......+ ..+.+... ..+. ....++.+...++++|++|..
T Consensus 98 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 98 QAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4433221 13799999987543221 11122111 1111 133456666778889998864
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=84.39 E-value=9.7 Score=31.30 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~~ 109 (249)
.++++|=.|+ .|++...+++++.. ...+|+.++...... -.++.++.+|+++.+...
T Consensus 17 ~~k~~lVTGa-s~gIG~aia~~l~~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 84 (270)
T 3is3_A 17 DGKVALVTGS-GRGIGAAVAVHLGR-----------LGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIV 84 (270)
T ss_dssp TTCEEEESCT-TSHHHHHHHHHHHH-----------TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHH
Confidence 3567777774 57777777776642 246888877654210 135778899999987655
Q ss_pred HHHHhcC--CCcccEEEeCCCCCCCCC-CCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFD--GCKADLVVCDGAPDVTGL-HDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~~~~~g~-~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+... -+.+|+++.+......+. .+.+... ..+. ....++.+...++++|++|..
T Consensus 85 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 151 (270)
T 3is3_A 85 KLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT 151 (270)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5443221 136999999875432221 1122211 1111 133455666778889998874
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.32 E-value=6 Score=33.30 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.|+++|=-|++ +|....+++.+.. ...+|+.+|+++.. .+ .++..+++|+++.+..+.+.+
T Consensus 28 ~gKvalVTGas-~GIG~aiA~~la~-----------~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 95 (273)
T 4fgs_A 28 NAKIAVITGAT-SGIGLAAAKRFVA-----------EGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYE 95 (273)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCcC-CHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHH
Confidence 46677777755 5677777776642 35789999987632 12 246678999999876655443
Q ss_pred hcC--CCcccEEEeCCCCCC-CCCCCcCH--HH-HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFD--GCKADLVVCDGAPDV-TGLHDMDE--FV-QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~~~~-~g~~~~~~--~~-~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
... -++.|+++.|..... ....+.+. +. ..+. .....+.+...++++|.+|..
T Consensus 96 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 96 KVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 321 147999999874322 12222222 21 2221 133455667788889988763
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.26 E-value=12 Score=30.76 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------------C----CCCceEe
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------P----IEGVIQV 98 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------~----~~~v~~~ 98 (249)
.|+++|=.| |+|++...+++.+.. ...+|+.+|.+... . -.++.++
T Consensus 12 ~gk~vlVTG-as~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (278)
T 3sx2_A 12 TGKVAFITG-AARGQGRAHAVRLAA-----------DGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVAR 79 (278)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHH-----------TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHH-----------CCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 356788777 456777777776642 34689999887310 0 1357788
Q ss_pred ecCCCChhhHHHHHHhcC--CCcccEEEeCCCCC
Q 025715 99 QGDITNARTAEVVIRHFD--GCKADLVVCDGAPD 130 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~--~~~~DlVlsD~~~~ 130 (249)
.+|+++.+..+.+.+... -+.+|+++.+....
T Consensus 80 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 80 QADVRDRESLSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 999999876555443221 13799999997543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=84.00 E-value=1.6 Score=36.26 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=50.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
+++||=.| + |....++++.+-. .+..|++++.++...-++++++.+|+++.+....+ +. +.+|
T Consensus 3 ~~~ilVtG-a-G~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~---~~-~~~d 65 (286)
T 3gpi_A 3 LSKILIAG-C-GDLGLELARRLTA-----------QGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASI---VH-LRPE 65 (286)
T ss_dssp CCCEEEEC-C-SHHHHHHHHHHHH-----------TTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTG---GG-GCCS
T ss_pred CCcEEEEC-C-CHHHHHHHHHHHH-----------CCCEEEEEeCCccccccCCceEEccCCChHHHHHh---hc-CCCC
Confidence 36788888 5 9999998887641 23589999988755446888999999987653322 22 3599
Q ss_pred EEEeCCC
Q 025715 122 LVVCDGA 128 (249)
Q Consensus 122 lVlsD~~ 128 (249)
.|+...+
T Consensus 66 ~vih~a~ 72 (286)
T 3gpi_A 66 ILVYCVA 72 (286)
T ss_dssp EEEECHH
T ss_pred EEEEeCC
Confidence 9998653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.00 E-value=3.6 Score=35.83 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=53.5
Q ss_pred CCCeEEEEc-CCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLC-AAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG-~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+|.+||=.| +|+ |..+..+++.++ ..+|+++|.++.+. . -|...+ -|..+ +..+.+.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-------------g~~Vi~~~~~~~~~~~~~~lGad~v-i~~~~-~~~~~v~~- 234 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-------------DLTVIATASRPETQEWVKSLGAHHV-IDHSK-PLAAEVAA- 234 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-------------CSEEEEECSSHHHHHHHHHTTCSEE-ECTTS-CHHHHHHT-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-------------CCEEEEEeCCHHHHHHHHHcCCCEE-EeCCC-CHHHHHHH-
Confidence 788999888 433 444444555543 36999999876321 0 122111 12222 22333443
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+..+.+|+|+-. .|. ...+..+.++|++||++++
T Consensus 235 ~~~~g~Dvvid~-----~g~------------~~~~~~~~~~l~~~G~iv~ 268 (363)
T 4dvj_A 235 LGLGAPAFVFST-----THT------------DKHAAEIADLIAPQGRFCL 268 (363)
T ss_dssp TCSCCEEEEEEC-----SCH------------HHHHHHHHHHSCTTCEEEE
T ss_pred hcCCCceEEEEC-----CCc------------hhhHHHHHHHhcCCCEEEE
Confidence 355689999853 221 1246778899999999996
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=83.75 E-value=9.2 Score=32.10 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=48.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------C---CCCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P---IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~---~~~v~~~~gDi~~~~~~~~i 111 (249)
+++||=.| |+|....++++.+-.. +...+|+++|..+.. . ..++.++.+|+++.+....+
T Consensus 3 ~m~vlVTG-atG~iG~~l~~~L~~~---------g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 72 (336)
T 2hun_A 3 SMKLLVTG-GMGFIGSNFIRYILEK---------HPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKEL 72 (336)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHH---------CTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHH
T ss_pred CCeEEEEC-CCchHHHHHHHHHHHh---------CCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHH
Confidence 46777666 5788888887765310 012589999876411 1 13678889999997655444
Q ss_pred HHhcCCCcccEEEeCCCC
Q 025715 112 IRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~ 129 (249)
. ..+|.|+...+.
T Consensus 73 ~-----~~~d~vih~A~~ 85 (336)
T 2hun_A 73 V-----RKVDGVVHLAAE 85 (336)
T ss_dssp H-----HTCSEEEECCCC
T ss_pred h-----hCCCEEEECCCC
Confidence 3 368999987653
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=83.74 E-value=8.2 Score=31.66 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------C-CCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P-IEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~-~~~v~~~~gDi~~~~~ 107 (249)
.++++|=-|++ |++...+++.+.. ...+|+.++..... . -.++.++.+|+++.+.
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 77 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFAL-----------ESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEE 77 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTT-----------SSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHH
Confidence 45678877755 6778888877752 34688887764311 0 1246778999999876
Q ss_pred HHHHHHhcCC--CcccEEEeCCCCCCCCC-CCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDG--CKADLVVCDGAPDVTGL-HDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~--~~~DlVlsD~~~~~~g~-~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+.+.+.. +.+|+++.+......+. ...+... ..+. ....+..+...++++|++|..
T Consensus 78 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 78 VAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 6554433211 47999999875332221 1122211 1111 133455556666778888863
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.69 E-value=4 Score=34.92 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=53.8
Q ss_pred cCCCeEEEEcCCCChHHH-HHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQ-VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~-~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~~~~~~i~~ 113 (249)
++|.+||=.|+|+.+... .+++.++ ...++++|.++.+. --|. ..+ |..+.+..+.+..
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G-------------~~~vi~~~~~~~k~~~a~~lGa~~~i--~~~~~~~~~~~~~ 223 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALG-------------AKSVTAIDISSEKLALAKSFGAMQTF--NSSEMSAPQMQSV 223 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcC-------------CcEEEEEechHHHHHHHHHcCCeEEE--eCCCCCHHHHHHh
Confidence 689999999987655433 3444544 24678999887431 0122 122 2222222222222
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.-....+|+|+-. .|. ...+..+.++|++||++++.
T Consensus 224 ~~~~~g~d~v~d~-----~G~------------~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 224 LRELRFNQLILET-----AGV------------PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp HGGGCSSEEEEEC-----SCS------------HHHHHHHHHHCCTTCEEEEC
T ss_pred hcccCCccccccc-----ccc------------cchhhhhhheecCCeEEEEE
Confidence 2233568888743 221 12467788999999999874
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=83.48 E-value=12 Score=31.26 Aligned_cols=114 Identities=8% Similarity=0.038 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~~~ 108 (249)
.++++|=.|+ .|++...+++.+.. ...+|+.++.+... .-.++.++.+|+++.+..
T Consensus 48 ~~k~vlVTGa-s~GIG~aia~~la~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 115 (294)
T 3r3s_A 48 KDRKALVTGG-DSGIGRAAAIAYAR-----------EGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFA 115 (294)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHH
Confidence 3567887785 57778887776642 24688888876321 013577889999998765
Q ss_pred HHHHHhcC--CCcccEEEeCCCCCC--CCCCCcCHHH---HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRHFD--GCKADLVVCDGAPDV--TGLHDMDEFV---QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~~~~--~g~~~~~~~~---~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+.+.+. -+.+|+++.+..... ....+.+... ..+. ....++.+...++++|++|..
T Consensus 116 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 116 RSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 54443221 147999999875422 1111222211 1111 133455666778889998864
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=18 Score=29.94 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~~i 111 (249)
.|+++|=-|++. |....+++++.. ....|+.+|.+.... -.++.++..|+++.+..+.+
T Consensus 6 ~gKvalVTGas~-GIG~aia~~la~-----------~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 73 (258)
T 4gkb_A 6 QDKVVIVTGGAS-GIGGAISMRLAE-----------ERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDA 73 (258)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH-----------TTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH-----------cCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHH
Confidence 456777777654 566666665542 346888889876431 23577889999998765443
Q ss_pred H----HhcCCCcccEEEeCCCC
Q 025715 112 I----RHFDGCKADLVVCDGAP 129 (249)
Q Consensus 112 ~----~~~~~~~~DlVlsD~~~ 129 (249)
. +.+ ++.|+++.+...
T Consensus 74 v~~~~~~~--G~iDiLVNnAGi 93 (258)
T 4gkb_A 74 VAQTIATF--GRLDGLVNNAGV 93 (258)
T ss_dssp HHHHHHHH--SCCCEEEECCCC
T ss_pred HHHHHHHh--CCCCEEEECCCC
Confidence 3 334 479999999754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=83.41 E-value=1.2 Score=37.92 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=48.8
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++|.+||=.|+|+ |.....+++..+ .+|++++ ++.+. . -|...+..| .+
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~G--------------a~Vi~~~-~~~~~~~~~~lGa~~v~~d---~~------- 194 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNAG--------------YVVDLVS-ASLSQALAAKRGVRHLYRE---PS------- 194 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEEC-SSCCHHHHHHHTEEEEESS---GG-------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEE-ChhhHHHHHHcCCCEEEcC---HH-------
Confidence 47899999999943 333334555554 6999999 76431 1 133222213 11
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+ ++.+|+|+-- .|.. .+..+.++|+++|++++-
T Consensus 195 ~v-~~g~Dvv~d~-----~g~~-------------~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 195 QV-TQKYFAIFDA-----VNSQ-------------NAAALVPSLKANGHIICI 228 (315)
T ss_dssp GC-CSCEEEEECC-------------------------TTGGGEEEEEEEEEE
T ss_pred Hh-CCCccEEEEC-----CCch-------------hHHHHHHHhcCCCEEEEE
Confidence 23 4689999842 2211 123567899999999974
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.39 E-value=14 Score=30.61 Aligned_cols=66 Identities=21% Similarity=0.114 Sum_probs=44.5
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
+||=.| |+|....++++.+. ..+.+++++...... ..++.++.+|+++ +....+. . .
T Consensus 3 ~vlVTG-atG~iG~~l~~~L~------------~~g~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~---~--~ 63 (313)
T 3ehe_A 3 LIVVTG-GAGFIGSHVVDKLS------------ESNEIVVIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYL---K--G 63 (313)
T ss_dssp CEEEET-TTSHHHHHHHHHHT------------TTSCEEEECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHH---T--T
T ss_pred EEEEEC-CCchHHHHHHHHHH------------hCCCEEEEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHh---c--C
Confidence 455555 78999999988875 345777776544221 2467889999998 4433332 2 6
Q ss_pred ccEEEeCCC
Q 025715 120 ADLVVCDGA 128 (249)
Q Consensus 120 ~DlVlsD~~ 128 (249)
+|.|+...+
T Consensus 64 ~d~vih~a~ 72 (313)
T 3ehe_A 64 AEEVWHIAA 72 (313)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 899988765
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=83.38 E-value=4.6 Score=32.84 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCe-EEEecCCCCC----C----C--CCceEeecCCCCh-hhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMA----P----I--EGVIQVQGDITNA-RTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-vvavDi~~~~----~----~--~~v~~~~gDi~~~-~~~ 108 (249)
.++++|=.|+ +|+....+++.+.. ...+ |+.++.++.. . . .++.++.+|+++. +..
T Consensus 4 ~~k~vlVtGa-s~gIG~~~a~~l~~-----------~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~ 71 (254)
T 1sby_A 4 TNKNVIFVAA-LGGIGLDTSRELVK-----------RNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAES 71 (254)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHH-----------TCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHH
T ss_pred CCcEEEEECC-CChHHHHHHHHHHH-----------CCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHH
Confidence 3567887875 68888888877642 2244 8888887631 0 1 2467789999987 544
Q ss_pred HHHHHhcC--CCcccEEEeCCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+.+. -+.+|+|+.+...
T Consensus 72 ~~~~~~~~~~~g~id~lv~~Ag~ 94 (254)
T 1sby_A 72 KKLLKKIFDQLKTVDILINGAGI 94 (254)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCcc
Confidence 43332211 1369999998753
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=83.29 E-value=13 Score=30.31 Aligned_cols=78 Identities=9% Similarity=-0.075 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------CCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------~~~v~~~~gDi~~~~~ 107 (249)
.++++|=.|++. |++...+++.+.. ....|+.++.+.... -.++.++..|+++.+.
T Consensus 19 ~~k~vlITGas~~~giG~~~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~ 87 (267)
T 3gdg_A 19 KGKVVVVTGASGPKGMGIEAARGCAE-----------MGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYES 87 (267)
T ss_dssp TTCEEEETTCCSSSSHHHHHHHHHHH-----------TSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHH-----------CCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHH
Confidence 467888888764 7788877776642 246888888775431 1357788999999876
Q ss_pred HHHHHHhcC--CCcccEEEeCCCC
Q 025715 108 AEVVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 108 ~~~i~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+.+.+. .+.+|+++.+...
T Consensus 88 v~~~~~~~~~~~g~id~li~nAg~ 111 (267)
T 3gdg_A 88 CEKLVKDVVADFGQIDAFIANAGA 111 (267)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 555443321 1479999999753
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.25 E-value=5.3 Score=33.63 Aligned_cols=78 Identities=12% Similarity=-0.071 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
.|++||=.|++ |++...+++.+.. .+.+|+.++.++... -.++.++.+|+++.+....
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~ 97 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFAR-----------RGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVR 97 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 45678877765 6777777776642 246899999876320 1357788999999876655
Q ss_pred HHHhcC--CCcccEEEeCCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAPD 130 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~~ 130 (249)
+.+... .+.+|+++.+....
T Consensus 98 ~~~~~~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 98 LADEAFRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHHhCCCCCEEEECCCcC
Confidence 443321 14799999997543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=82.87 E-value=1.3 Score=38.40 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=53.2
Q ss_pred ccCCCeEEEEcC-CC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCA-AP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~-gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=.|+ |+ |.....+++..+ .+|+++ .++.+. . -+...+ | .+.+..+.+.
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--------------a~Vi~~-~~~~~~~~~~~lGa~~i--~-~~~~~~~~~~ 209 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALARG--------------ARVFAT-ARGSDLEYVRDLGATPI--D-ASREPEDYAA 209 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEE-ECHHHHHHHHHHTSEEE--E-TTSCHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCC--------------CEEEEE-eCHHHHHHHHHcCCCEe--c-cCCCHHHHHH
Confidence 478999999984 32 333334454443 688888 554321 0 133332 3 3333334444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+...+..+|+|+-. .|. ..+..+.++|+++|++++
T Consensus 210 ~~~~~~g~D~vid~-----~g~-------------~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 210 EHTAGQGFDLVYDT-----LGG-------------PVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp HHHTTSCEEEEEES-----SCT-------------HHHHHHHHHEEEEEEEEE
T ss_pred HHhcCCCceEEEEC-----CCc-------------HHHHHHHHHHhcCCeEEE
Confidence 44455679999853 221 135677889999999986
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.83 E-value=9.4 Score=31.96 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=48.6
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---CC-CCceEeecCCCChhhHHHHHHhcCCCc
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PI-EGVIQVQGDITNARTAEVVIRHFDGCK 119 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---~~-~~v~~~~gDi~~~~~~~~i~~~~~~~~ 119 (249)
+||=.| |+|....++++.+-. .+.+|++++..+.. .+ .+++++.+|+++.+.+..+.+. ..
T Consensus 3 ~ilVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~ 67 (330)
T 2c20_A 3 SILICG-GAGYIGSHAVKKLVD-----------EGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQ---EN 67 (330)
T ss_dssp EEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHH---SC
T ss_pred EEEEEC-CCcHHHHHHHHHHHh-----------CCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhh---cC
Confidence 566555 579999888876641 23689999876532 12 2688899999998765554432 36
Q ss_pred ccEEEeCCCC
Q 025715 120 ADLVVCDGAP 129 (249)
Q Consensus 120 ~DlVlsD~~~ 129 (249)
+|.|+...+.
T Consensus 68 ~d~vih~a~~ 77 (330)
T 2c20_A 68 IEAVMHFAAD 77 (330)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCcc
Confidence 9999987653
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=82.57 E-value=21 Score=30.12 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=50.0
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCC-----CeEEEecCCCCCC---CCCceEeecCCCChhhHHHHHHh
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL-----PLIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~-----~~vvavDi~~~~~---~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
++||=.| |+|....++++.+-. .. .+|++++.++... ..+++++.+|+++.+....+.
T Consensus 2 ~~vlVtG-atG~iG~~l~~~L~~-----------~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-- 67 (364)
T 2v6g_A 2 SVALIVG-VTGIIGNSLAEILPL-----------ADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKL-- 67 (364)
T ss_dssp EEEEEET-TTSHHHHHHHHHTTS-----------TTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHH--
T ss_pred CEEEEEC-CCcHHHHHHHHHHHh-----------CCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHH--
Confidence 5666666 679999999887742 12 5899999876432 247888999999976554433
Q ss_pred cCCC-cccEEEeCCCC
Q 025715 115 FDGC-KADLVVCDGAP 129 (249)
Q Consensus 115 ~~~~-~~DlVlsD~~~ 129 (249)
.+. .+|.|+...+.
T Consensus 68 -~~~~~~d~vih~a~~ 82 (364)
T 2v6g_A 68 -SPLTDVTHVFYVTWA 82 (364)
T ss_dssp -TTCTTCCEEEECCCC
T ss_pred -hcCCCCCEEEECCCC
Confidence 322 39999987653
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=82.56 E-value=11 Score=30.37 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-------CCCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-------~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++++|=.|+ +|++...+++.+.. ...+|+.++.++... -.++.++.+|+++.+..+.+.+
T Consensus 11 ~~k~vlVTGa-sggiG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (265)
T 2o23_A 11 KGLVAVITGG-ASGLGLATAERLVG-----------QGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALA 78 (265)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 3567887775 57888888776642 246899999886431 1357788999999876555443
Q ss_pred hcC--CCcccEEEeCCCC
Q 025715 114 HFD--GCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~~ 129 (249)
.+. .+.+|+|+.+...
T Consensus 79 ~~~~~~g~id~li~~Ag~ 96 (265)
T 2o23_A 79 LAKGKFGRVDVAVNCAGI 96 (265)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHCCCCCEEEECCcc
Confidence 221 1369999998753
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=6.6 Score=30.20 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=49.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
++||=.| |+|+....+++.+-. ...+|++++.++... ..+++++.+|+++.+..... +.
T Consensus 4 ~~ilVtG-atG~iG~~l~~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~~-- 66 (206)
T 1hdo_A 4 KKIAIFG-ATGQTGLTTLAQAVQ-----------AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT---VA-- 66 (206)
T ss_dssp CEEEEES-TTSHHHHHHHHHHHH-----------TTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH---HT--
T ss_pred CEEEEEc-CCcHHHHHHHHHHHH-----------CCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHH---Hc--
Confidence 5777776 578888888776641 236899999876431 35788899999997654443 33
Q ss_pred cccEEEeCCCC
Q 025715 119 KADLVVCDGAP 129 (249)
Q Consensus 119 ~~DlVlsD~~~ 129 (249)
.+|.|++....
T Consensus 67 ~~d~vi~~a~~ 77 (206)
T 1hdo_A 67 GQDAVIVLLGT 77 (206)
T ss_dssp TCSEEEECCCC
T ss_pred CCCEEEECccC
Confidence 48999987653
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=82.37 E-value=15 Score=31.36 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=49.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--C--------------CCCceEeecCCCCh
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--------------IEGVIQVQGDITNA 105 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--~--------------~~~v~~~~gDi~~~ 105 (249)
+++||=.|+ +|++...+++.+.. ...+|+.++.+... . -.++.++.+|+++.
T Consensus 2 ~k~vlVTGa-s~GIG~ala~~L~~-----------~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~ 69 (327)
T 1jtv_A 2 RTVVLITGC-SSGIGLHLAVRLAS-----------DPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDS 69 (327)
T ss_dssp CEEEEESCC-SSHHHHHHHHHHHT-----------CTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH-----------CCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCH
Confidence 345665565 57788888877652 22345555443211 0 03577889999998
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
+..+.+.+.+..+.+|+++.+...
T Consensus 70 ~~v~~~~~~~~~g~iD~lVnnAG~ 93 (327)
T 1jtv_A 70 KSVAAARERVTEGRVDVLVCNAGL 93 (327)
T ss_dssp HHHHHHHHTCTTSCCSEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 877776665555689999999754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=82.37 E-value=5.4 Score=33.27 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=33.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCccc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~D 121 (249)
+++||=.| |+|....++++.+-. .+.+|++++.++.. ++ ++.+|+++.+....+.+. ..+|
T Consensus 2 ~~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~--~~--~~~~Dl~d~~~~~~~~~~---~~~d 62 (315)
T 2ydy_A 2 NRRVLVTG-ATGLLGRAVHKEFQQ-----------NNWHAVGCGFRRAR--PK--FEQVNLLDSNAVHHIIHD---FQPH 62 (315)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHT-----------TTCEEEEEC----------------------CHHHHHH---HCCS
T ss_pred CCeEEEEC-CCcHHHHHHHHHHHh-----------CCCeEEEEccCCCC--CC--eEEecCCCHHHHHHHHHh---hCCC
Confidence 35677666 578899888877642 23689999976533 23 678899887654443322 1589
Q ss_pred EEEeCCCC
Q 025715 122 LVVCDGAP 129 (249)
Q Consensus 122 lVlsD~~~ 129 (249)
.|+...+.
T Consensus 63 ~vih~A~~ 70 (315)
T 2ydy_A 63 VIVHCAAE 70 (315)
T ss_dssp EEEECC--
T ss_pred EEEECCcc
Confidence 99987653
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=82.35 E-value=6.5 Score=33.46 Aligned_cols=72 Identities=19% Similarity=0.084 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------------CCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------------IEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------------~~~v~~~~gDi~~~ 105 (249)
.+++||=.| |+|....++++.+-. .+..|++++.++... ..++.++.+|+++.
T Consensus 26 ~~~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 93 (352)
T 1sb8_A 26 QPKVWLITG-VAGFIGSNLLETLLK-----------LDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNL 93 (352)
T ss_dssp SCCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSH
T ss_pred cCCeEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCH
Confidence 356888777 579999888776641 236899999865310 15788899999997
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCC
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
+....+. . .+|+|+...+.
T Consensus 94 ~~~~~~~---~--~~d~vih~A~~ 112 (352)
T 1sb8_A 94 DDCNNAC---A--GVDYVLHQAAL 112 (352)
T ss_dssp HHHHHHH---T--TCSEEEECCSC
T ss_pred HHHHHHh---c--CCCEEEECCcc
Confidence 6544433 3 69999987653
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=82.14 E-value=9.3 Score=31.16 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.|+ +|++...+++.+.. ...+|+.+|.++... -.++.++.+|+++.+..+.
T Consensus 11 ~~k~vlVTGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 78 (256)
T 3gaf_A 11 NDAVAIVTGA-AAGIGRAIAGTFAK-----------AGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREA 78 (256)
T ss_dssp TTCEEEECSC-SSHHHHHHHHHHHH-----------HTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence 4567777775 56677777665531 236899999875320 1357788999999876555
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... -+.+|+++.+...
T Consensus 79 ~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 79 VIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 443221 1479999999754
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=81.77 E-value=20 Score=29.21 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcC--CCc
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~--~~~ 119 (249)
++++|=.|+ +|++...+++.+.. ...+|+.++.++.. ...+.++.+|+++.+..+.+.+... -+.
T Consensus 21 ~k~vlVTGa-s~gIG~aia~~l~~-----------~G~~V~~~~r~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 87 (253)
T 2nm0_A 21 SRSVLVTGG-NRGIGLAIARAFAD-----------AGDKVAITYRSGEP-PEGFLAVKCDITDTEQVEQAYKEIEETHGP 87 (253)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEESSSCC-CTTSEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHH-----------CCCEEEEEeCChHh-hccceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 567777775 67778777776542 24688888887643 3457788999999876555433221 146
Q ss_pred ccEEEeCCCC
Q 025715 120 ADLVVCDGAP 129 (249)
Q Consensus 120 ~DlVlsD~~~ 129 (249)
+|+++.+...
T Consensus 88 iD~lv~nAg~ 97 (253)
T 2nm0_A 88 VEVLIANAGV 97 (253)
T ss_dssp CSEEEEECSC
T ss_pred CCEEEECCCC
Confidence 9999988653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=81.75 E-value=2.6 Score=40.18 Aligned_cols=45 Identities=11% Similarity=-0.026 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcC---CCCCCCCCCCCCCCeEEEecCCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYL---PAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~---~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
+..+|+|+|.|+|--...+.+.... .++. ......++++++..|+
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~----~~~~~l~~~s~E~~p~ 105 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPN----ATLRRLHYISFEKYPL 105 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTT----SSCCEEEEEEEESSCC
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCC----CCCceEEEEEeeCCCC
Confidence 4579999999999988776553210 0000 0001257999999774
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=81.48 E-value=4.7 Score=34.97 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=49.9
Q ss_pred cCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------------------
Q 025715 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------------- 90 (249)
Q Consensus 36 ~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------------- 90 (249)
|..+..+.+||=.| |+|....++++.+-. .+.+|+++|.....
T Consensus 5 ~~~~~~~~~vlVTG-~tGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 72 (404)
T 1i24_A 5 HHHHHHGSRVMVIG-GDGYCGWATALHLSK-----------KNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72 (404)
T ss_dssp -------CEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHH
T ss_pred cccccCCCeEEEeC-CCcHHHHHHHHHHHh-----------CCCeEEEEEecCccccccccccccccccchhhhhhhhHh
Confidence 34456788999776 679999998876631 23689999864210
Q ss_pred --CCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCC
Q 025715 91 --PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 91 --~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
...++.++.+|+++.+....+.+.. .+|+|+...+.
T Consensus 73 ~~~~~~v~~~~~Dl~d~~~~~~~~~~~---~~D~Vih~A~~ 110 (404)
T 1i24_A 73 ALTGKSIELYVGDICDFEFLAESFKSF---EPDSVVHFGEQ 110 (404)
T ss_dssp HHHCCCCEEEESCTTSHHHHHHHHHHH---CCSEEEECCSC
T ss_pred hccCCceEEEECCCCCHHHHHHHHhcc---CCCEEEECCCC
Confidence 0136788999999987655544322 59999988753
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.32 E-value=5.4 Score=32.54 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecC-CCCC------C----CCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDL-QPMA------P----IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi-~~~~------~----~~~v~~~~gDi~~~~~~~ 109 (249)
.+++||=.| |+|+....+++++.. ...+|+.++. ++.. . -.++.++.+|+++.+...
T Consensus 20 ~~k~vlItG-asggiG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 87 (274)
T 1ja9_A 20 AGKVALTTG-AGRGIGRGIAIELGR-----------RGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVV 87 (274)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHH-----------TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 356777666 568888888776642 2368888887 3311 0 135677899999987655
Q ss_pred HHHHhcC--CCcccEEEeCCCC
Q 025715 110 VVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 110 ~i~~~~~--~~~~DlVlsD~~~ 129 (249)
.+.+.+. -+.+|.|+.+...
T Consensus 88 ~~~~~~~~~~~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 88 ALFDKAVSHFGGLDFVMSNSGM 109 (274)
T ss_dssp HHHHHHHHHHSCEEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 4433211 1369999998754
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=81.09 E-value=13 Score=29.57 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=50.1
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHHhcC
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
++|=.|+ +|++...+++++.. .+.+|+.++.++.. .+ .++.++.+|+++.+....+.+.+.
T Consensus 3 ~vlVTGa-s~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 70 (230)
T 3guy_A 3 LIVITGA-SSGLGAELAKLYDA-----------EGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLD 70 (230)
T ss_dssp CEEEEST-TSHHHHHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCS
T ss_pred EEEEecC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHh
Confidence 3555564 57778887776642 24689999987632 12 357788999999887777766554
Q ss_pred CCcccEEEeCCCC
Q 025715 117 GCKADLVVCDGAP 129 (249)
Q Consensus 117 ~~~~DlVlsD~~~ 129 (249)
..+|+|+.+...
T Consensus 71 -~~~d~lv~~Ag~ 82 (230)
T 3guy_A 71 -SIPSTVVHSAGS 82 (230)
T ss_dssp -SCCSEEEECCCC
T ss_pred -hcCCEEEEeCCc
Confidence 356999998754
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=81.05 E-value=5.4 Score=31.96 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=46.0
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEE
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlV 123 (249)
+||=.| |+|+...++++.+.. .+.+|++++.++... .. .+.+|+.+.+....+.+.+. +.+|.|
T Consensus 3 ~vlVtG-asg~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~-~~--~~~~D~~~~~~~~~~~~~~~-~~~d~v 66 (255)
T 2dkn_A 3 VIAITG-SASGIGAALKELLAR-----------AGHTVIGIDRGQADI-EA--DLSTPGGRETAVAAVLDRCG-GVLDGL 66 (255)
T ss_dssp EEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESSSSSE-EC--CTTSHHHHHHHHHHHHHHHT-TCCSEE
T ss_pred EEEEeC-CCcHHHHHHHHHHHh-----------CCCEEEEEeCChhHc-cc--cccCCcccHHHHHHHHHHcC-CCccEE
Confidence 455555 568888888776642 246899999876432 11 25678887766655554442 479999
Q ss_pred EeCCCC
Q 025715 124 VCDGAP 129 (249)
Q Consensus 124 lsD~~~ 129 (249)
+.+...
T Consensus 67 i~~Ag~ 72 (255)
T 2dkn_A 67 VCCAGV 72 (255)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998754
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.84 E-value=13 Score=30.26 Aligned_cols=78 Identities=19% Similarity=0.106 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------CCCCceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------------~~~~v~~~~gDi~~~~~ 107 (249)
.++++|=.|++ |+....+++.+.. .+.+|+.++.++.. ...++.++.+|+++.+.
T Consensus 6 ~~k~~lVTGas-~GIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 73 (250)
T 3nyw_A 6 QKGLAIITGAS-QGIGAVIAAGLAT-----------DGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTK 73 (250)
T ss_dssp CCCEEEEESTT-SHHHHHHHHHHHH-----------HTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHH
Confidence 35677777754 6677777665531 23689999987632 11456788999999876
Q ss_pred HHHHHHhcC--CCcccEEEeCCCCC
Q 025715 108 AEVVIRHFD--GCKADLVVCDGAPD 130 (249)
Q Consensus 108 ~~~i~~~~~--~~~~DlVlsD~~~~ 130 (249)
...+.+.+. -+.+|+++.+....
T Consensus 74 v~~~~~~~~~~~g~iD~lvnnAg~~ 98 (250)
T 3nyw_A 74 ADTEIKDIHQKYGAVDILVNAAAMF 98 (250)
T ss_dssp HHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcC
Confidence 555443221 14799999997643
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=80.77 E-value=16 Score=30.32 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C-CCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I-EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~-~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.|+++|=.|+ .|++...+++++.. .+.+|+.+|.++... + .++.++.+|+++.+....+.+
T Consensus 28 ~gk~vlVTGa-s~gIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 95 (277)
T 3gvc_A 28 AGKVAIVTGA-GAGIGLAVARRLAD-----------EGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVD 95 (277)
T ss_dssp TTCEEEETTT-TSTHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHH
Confidence 3567776675 56677777766542 346899999875321 1 357788999999876555443
Q ss_pred hcC--CCcccEEEeCCCC
Q 025715 114 HFD--GCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~~ 129 (249)
... -+.+|+++.+...
T Consensus 96 ~~~~~~g~iD~lvnnAg~ 113 (277)
T 3gvc_A 96 ACVAAFGGVDKLVANAGV 113 (277)
T ss_dssp HHHHHHSSCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 221 1479999998754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=80.60 E-value=14 Score=29.75 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~~ 110 (249)
.++++|=.| |+|+....+++.+.. ...+|+.+|.++... -.++.++.+|+++.+....
T Consensus 12 ~~k~vlItG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 79 (260)
T 3awd_A 12 DNRVAIVTG-GAQNIGLACVTALAE-----------AGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQN 79 (260)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 356777777 568888888776642 246899999875310 1357788999999876555
Q ss_pred HHHhcC--CCcccEEEeCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+... .+.+|+|+.+...
T Consensus 80 ~~~~~~~~~~~id~vi~~Ag~ 100 (260)
T 3awd_A 80 AVRSVHEQEGRVDILVACAGI 100 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 443221 1369999998753
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=80.59 E-value=2.5 Score=31.33 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=58.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
.+|+=+|+ |.+...+++.+.. .+..|+++|.++... -.++..+.||.++.+.+.. ..-.
T Consensus 8 ~~viIiG~--G~~G~~la~~L~~-----------~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~----a~i~ 70 (140)
T 3fwz_A 8 NHALLVGY--GRVGSLLGEKLLA-----------SDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQL----AHLE 70 (140)
T ss_dssp SCEEEECC--SHHHHHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHH----TTGG
T ss_pred CCEEEECc--CHHHHHHHHHHHH-----------CCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHh----cCcc
Confidence 46777776 6777777776642 236899999987431 2577889999999775432 2335
Q ss_pred cccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 119 ~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+|+|++-.. +..... .+....+.+.|+..++.+..
T Consensus 71 ~ad~vi~~~~---------~~~~n~-----~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 71 CAKWLILTIP---------NGYEAG-----EIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp GCSEEEECCS---------CHHHHH-----HHHHHHHHHCSSSEEEEEES
T ss_pred cCCEEEEECC---------ChHHHH-----HHHHHHHHHCCCCeEEEEEC
Confidence 7899886431 111111 11223456678887776554
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.45 E-value=2 Score=37.26 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=54.0
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i 111 (249)
+++|.+||=.|+ .|+.... +++..+ .+|+++|.++.+. . -+... .-|..+.+..+.+
T Consensus 165 ~~~g~~VlV~Gg-~g~iG~~~~~~a~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~-~~~~~~~~~~~~~ 228 (353)
T 4dup_A 165 LTEGESVLIHGG-TSGIGTTAIQLARAFG--------------AEVYATAGSTGKCEACERLGAKR-GINYRSEDFAAVI 228 (353)
T ss_dssp CCTTCEEEESST-TSHHHHHHHHHHHHTT--------------CEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHH
T ss_pred CCCCCEEEEEcC-CCHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHhcCCCE-EEeCCchHHHHHH
Confidence 478999998753 4444444 444443 6899999876321 0 12111 1133333333444
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.. .+.+|+|+... |. + .+..+.+.|++||++++-
T Consensus 229 ~~~~-~~g~Dvvid~~-----g~---~----------~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 229 KAET-GQGVDIILDMI-----GA---A----------YFERNIASLAKDGCLSII 264 (353)
T ss_dssp HHHH-SSCEEEEEESC-----CG---G----------GHHHHHHTEEEEEEEEEC
T ss_pred HHHh-CCCceEEEECC-----CH---H----------HHHHHHHHhccCCEEEEE
Confidence 4434 56799998643 21 1 245678899999999873
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=5.2 Score=32.38 Aligned_cols=70 Identities=14% Similarity=0.028 Sum_probs=45.3
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccEE
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlV 123 (249)
++|=.| |+|+....+++.+.. ...+|++++.++...-. .+.+|+++.+..+.+.+.+ .+++|++
T Consensus 3 ~vlVTG-as~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~---~~~~Dl~~~~~v~~~~~~~-~~~id~l 66 (257)
T 1fjh_A 3 IIVISG-CATGIGAATRKVLEA-----------AGHQIVGIDIRDAEVIA---DLSTAEGRKQAIADVLAKC-SKGMDGL 66 (257)
T ss_dssp EEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESSSSSEEC---CTTSHHHHHHHHHHHHTTC-TTCCSEE
T ss_pred EEEEeC-CCCHHHHHHHHHHHH-----------CCCEEEEEeCCchhhcc---ccccCCCCHHHHHHHHHHh-CCCCCEE
Confidence 455555 567888888776642 24689999987643111 1567888876665555444 2578999
Q ss_pred EeCCCC
Q 025715 124 VCDGAP 129 (249)
Q Consensus 124 lsD~~~ 129 (249)
+.+...
T Consensus 67 v~~Ag~ 72 (257)
T 1fjh_A 67 VLCAGL 72 (257)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998754
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.17 E-value=16 Score=29.58 Aligned_cols=77 Identities=5% Similarity=-0.027 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCC---CeEEEecCCCCCC---------CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL---PLIVAIDLQPMAP---------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~---~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~ 108 (249)
.++++|=.|+ +|+....+++.+.. .. ..|+.++.++... ..++.++.+|+++.+..
T Consensus 20 ~~k~vlITGa-sggIG~~la~~L~~-----------~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v 87 (267)
T 1sny_A 20 HMNSILITGC-NRGLGLGLVKALLN-----------LPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAY 87 (267)
T ss_dssp CCSEEEESCC-SSHHHHHHHHHHHT-----------SSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGH
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHh-----------cCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHH
Confidence 3567777774 68888888887652 23 6899999886431 13678889999998766
Q ss_pred HHHHHh----cCCCcccEEEeCCCC
Q 025715 109 EVVIRH----FDGCKADLVVCDGAP 129 (249)
Q Consensus 109 ~~i~~~----~~~~~~DlVlsD~~~ 129 (249)
+.+.+. +....+|+|+.+...
T Consensus 88 ~~~~~~~~~~~g~~~id~li~~Ag~ 112 (267)
T 1sny_A 88 DKLVADIEGVTKDQGLNVLFNNAGI 112 (267)
T ss_dssp HHHHHHHHHHHGGGCCSEEEECCCC
T ss_pred HHHHHHHHHhcCCCCccEEEECCCc
Confidence 555433 221269999998753
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.15 E-value=5.4 Score=32.68 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C---CCCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~---~~~v~~~~gDi~~~~~~ 108 (249)
.++++|=.| |+|+....+++.+.. .+.+|+.++.++.. . -.++.++.+|+++.+..
T Consensus 6 ~~k~vlVTG-as~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v 73 (267)
T 2gdz_A 6 NGKVALVTG-AAQGIGRAFAEALLL-----------KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQL 73 (267)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHH
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHH
Confidence 356777777 467778877776642 24689999887521 0 12467789999998765
Q ss_pred HHHHHhcC--CCcccEEEeCCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+... -+.+|+++.+...
T Consensus 74 ~~~~~~~~~~~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 74 RDTFRKVVDHFGRLDILVNNAGV 96 (267)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 55433221 1369999998753
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=80.10 E-value=11 Score=30.61 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=48.5
Q ss_pred eEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-CCCceEeecCCCChhhHHHHHHhcCCCcccE
Q 025715 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFDGCKADL 122 (249)
Q Consensus 44 ~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~~~v~~~~gDi~~~~~~~~i~~~~~~~~~Dl 122 (249)
+||=.| |+|+...++++.+-. ...+|++++.++... ..++.++.+|+++.+....+. . .+|.
T Consensus 4 ~ilVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~--~~d~ 66 (267)
T 3ay3_A 4 RLLVTG-AAGGVGSAIRPHLGT-----------LAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLV---K--DCDG 66 (267)
T ss_dssp EEEEES-TTSHHHHHHGGGGGG-----------TEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHH---T--TCSE
T ss_pred eEEEEC-CCCHHHHHHHHHHHh-----------CCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHH---c--CCCE
Confidence 566556 568999998887642 235899999887532 246788899999976554433 3 4899
Q ss_pred EEeCCCC
Q 025715 123 VVCDGAP 129 (249)
Q Consensus 123 VlsD~~~ 129 (249)
|++....
T Consensus 67 vi~~a~~ 73 (267)
T 3ay3_A 67 IIHLGGV 73 (267)
T ss_dssp EEECCSC
T ss_pred EEECCcC
Confidence 9988654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=80.06 E-value=2.6 Score=36.47 Aligned_cols=95 Identities=17% Similarity=0.010 Sum_probs=56.2
Q ss_pred ccCC--CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCC-eEEEecCCCCC-----CCCCceEeecCCCChhhHHH
Q 025715 39 FEGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA-----PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 39 ~~~g--~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~vvavDi~~~~-----~~~~v~~~~gDi~~~~~~~~ 110 (249)
+++| .+||=.|++ |+....+.+.... ... +|+++|.++.+ ..-+... ..|..+.+..+.
T Consensus 156 ~~~g~~~~vlI~Gas-ggiG~~~~~~a~~-----------~Ga~~Vi~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~ 222 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAA-GACGSVAGQIGHF-----------LGCSRVVGICGTHEKCILLTSELGFDA-AINYKKDNVAEQ 222 (357)
T ss_dssp CCTTSCCEEEESSTT-BHHHHHHHHHHHH-----------TTCSEEEEEESCHHHHHHHHHTSCCSE-EEETTTSCHHHH
T ss_pred CCCCCccEEEEECCC-cHHHHHHHHHHHH-----------CCCCeEEEEeCCHHHHHHHHHHcCCce-EEecCchHHHHH
Confidence 4678 999999873 5555554443221 125 89999987532 1013221 224444444444
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.+.... .+|+|+... |. ..+..+.++|++||++++
T Consensus 223 ~~~~~~~-~~d~vi~~~-----G~-------------~~~~~~~~~l~~~G~iv~ 258 (357)
T 2zb4_A 223 LRESCPA-GVDVYFDNV-----GG-------------NISDTVISQMNENSHIIL 258 (357)
T ss_dssp HHHHCTT-CEEEEEESC-----CH-------------HHHHHHHHTEEEEEEEEE
T ss_pred HHHhcCC-CCCEEEECC-----CH-------------HHHHHHHHHhccCcEEEE
Confidence 5444333 799999653 20 245678899999999986
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=80.05 E-value=23 Score=28.98 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcC-
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD- 116 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~- 116 (249)
++++|=-|+ +|++...+++.+.. .+.+|+.++.++.. ...++.++.+|+++.+..+.+.+...
T Consensus 16 ~k~vlVTGa-s~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 16 KKLVVITGA-SSGIGEAIARRFSE-----------EGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp CCEEEEEST-TSHHHHHHHHHHHH-----------TTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 456777775 57777777776642 24689999887522 12467788999999876555443221
Q ss_pred -CCcccEEEeCCCC
Q 025715 117 -GCKADLVVCDGAP 129 (249)
Q Consensus 117 -~~~~DlVlsD~~~ 129 (249)
-+.+|+++.+...
T Consensus 84 ~~g~iD~lvnnAg~ 97 (266)
T 3p19_A 84 IYGPADAIVNNAGM 97 (266)
T ss_dssp HHCSEEEEEECCCC
T ss_pred HCCCCCEEEECCCc
Confidence 1379999999754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 249 | ||||
| d1ej0a_ | 180 | c.66.1.2 (A:) RNA methyltransferase FtsJ {Escheric | 2e-49 | |
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 1e-31 |
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Score = 158 bits (400), Expect = 2e-49
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79
G R+R+ FKL +I + +F+ VVDL AAPG WSQ + + G
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVT------------QIGGKG 48
Query: 80 LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
I+A DL PM PI GV +QGD + + ++ K +V+ D AP+++G +D
Sbjct: 49 RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDI 108
Query: 140 FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSS 199
L+ L + VL GG F+ K+F+G+ +++ F V KP SSR S
Sbjct: 109 PRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARS 168
Query: 200 IEAFAVCENYFP 211
E + V P
Sbjct: 169 REVYIVATGRKP 180
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 115 bits (288), Expect = 1e-31
Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 21/230 (9%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
++ R + +R + KL E + +VVDL G WS
Sbjct: 32 TLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPE-GKVVDLGCGRGGWSYYC------ 84
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
L L PI + + V + + D ++C
Sbjct: 85 -GGLKNVREV--KGLTKGGPGH-EEPIPMSTYGWNLVR--LQSGVDVFFIPPERCDTLLC 138
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR--GKDTSLLYCQLKLF 183
D + V++ L L +V + L +F K+ L+
Sbjct: 139 DIGE-----SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK 193
Query: 184 FPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 233
P SRNS+ E + V L+ +
Sbjct: 194 HGGALVRNP-LSRNSTHEMYWVSNASGNIVSSVNMISRMLINRFTMRHKK 242
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 100.0 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 99.94 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.5 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.47 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.45 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.42 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.4 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.4 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.39 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.38 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.38 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.37 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.37 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.32 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.31 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.31 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.31 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.31 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.3 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.29 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.29 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.28 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.25 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.25 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.25 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.25 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.24 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.24 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.22 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.22 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.2 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.18 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.18 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.16 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.16 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.14 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.13 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.12 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.12 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.11 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.1 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.09 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.08 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.08 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.07 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.06 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.04 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.02 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.01 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.01 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.99 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.99 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.97 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.96 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.95 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.93 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.9 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.89 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.85 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.81 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.8 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.76 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.75 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.75 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.71 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.69 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.65 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.6 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.6 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.58 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.56 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.55 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.5 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.43 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.41 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.41 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.4 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.2 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.12 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.11 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.08 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.08 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.9 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.88 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.84 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.82 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.81 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.78 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.74 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.74 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.69 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.68 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.66 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.42 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.27 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.99 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.98 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.88 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.84 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.8 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.79 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.72 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.68 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.58 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.38 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.5 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.47 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.39 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.13 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.98 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.85 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.68 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.28 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.15 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.15 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.0 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 93.99 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.99 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.61 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.27 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 93.09 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.97 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.87 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.7 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.63 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.53 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.36 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.63 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 89.23 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 88.69 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.4 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 87.77 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 87.18 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.18 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 86.83 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 86.29 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.82 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.26 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 84.94 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 84.54 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 84.37 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 83.94 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 83.67 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 83.24 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 82.82 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 82.73 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 82.23 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 82.07 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.15 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 80.99 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 80.88 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.8 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.49 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 80.29 |
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-47 Score=310.54 Aligned_cols=180 Identities=33% Similarity=0.509 Sum_probs=171.2
Q ss_pred ccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEee
Q 025715 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQ 99 (249)
Q Consensus 20 ~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~ 99 (249)
||++||+|||.||+++|++++++.+|||||||||+|++++.++.+ ..+.|+++|+.++.+++++.+++
T Consensus 1 GyrsRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~------------~~~~v~~vDl~~~~~i~~~~~~~ 68 (180)
T d1ej0a_ 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG------------GKGRIIACDLLPMDPIVGVDFLQ 68 (180)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHC------------TTCEEEEEESSCCCCCTTEEEEE
T ss_pred CchhHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeecc------------ccceEEEeecccccccCCceEee
Confidence 799999999999999999999999999999999999999999886 46899999999999999999999
Q ss_pred cCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHH
Q 025715 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179 (249)
Q Consensus 100 gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~ 179 (249)
+|+++......+...+...++|+|+|||+|+++|.++.|+..+.+|+.+++..|.++|++||+||+|+|++..+.+++..
T Consensus 69 ~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~ 148 (180)
T d1ej0a_ 69 GDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 148 (180)
T ss_dssp SCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHH
T ss_pred cccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHH
Confidence 99999887777777777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeeEEecCCCCCCCCceEEEEEeeccC
Q 025715 180 LKLFFPVVTFAKPKSSRNSSIEAFAVCENYFP 211 (249)
Q Consensus 180 l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~ 211 (249)
++.+|+.|+++||.+||+.|+|+|+||+||++
T Consensus 149 l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g~Kp 180 (180)
T d1ej0a_ 149 IRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180 (180)
T ss_dssp HHHHEEEEEEECCTTSCTTCCEEEEEEEEECC
T ss_pred HHhhcCEEEEECCCCcccCCceEEEEEecCCC
Confidence 99999999999999999999999999999974
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=99.94 E-value=6e-28 Score=201.71 Aligned_cols=172 Identities=19% Similarity=0.124 Sum_probs=127.2
Q ss_pred ChhHHHHHHhccchhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCC--
Q 025715 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ-- 87 (249)
Q Consensus 10 d~~~~~a~~~~~~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~-- 87 (249)
+.+.+.+...+|+||+++||.+|++++ +++++.+|+|||||||+|+++++.+.. ...|.|+|+-
T Consensus 36 ~~~~~~~~~~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~-------------v~~V~g~~iG~d 101 (257)
T d2p41a1 36 EGIKRGETDHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKN-------------VREVKGLTKGGP 101 (257)
T ss_dssp HHHHTTCCSSCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTT-------------EEEEEEECCCST
T ss_pred HHHHhccccCCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcC-------------CCceeEEEecCc
Confidence 444444444568999999999999998 779999999999999999999987642 2456666662
Q ss_pred -CCCCCCC-------ceEee-cCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc
Q 025715 88 -PMAPIEG-------VIQVQ-GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 88 -~~~~~~~-------v~~~~-gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (249)
.+.+++. +++.. .|+.. +.++.+|+|+||++++ ++.+..++.+.+ .+++.|.++|+
T Consensus 102 ~~e~P~~~~~~~~ni~~~~~~~dv~~----------l~~~~~D~vlcDm~es-s~~~~vd~~Rtl----~vLela~~wLk 166 (257)
T d2p41a1 102 GHEEPIPMSTYGWNLVRLQSGVDVFF----------IPPERCDTLLCDIGES-SPNPTVEAGRTL----RVLNLVENWLS 166 (257)
T ss_dssp TSCCCCCCCSTTGGGEEEECSCCTTT----------SCCCCCSEEEECCCCC-CSSHHHHHHHHH----HHHHHHHHHCC
T ss_pred cccCCccccccccccccchhhhhHHh----------cCCCcCCEEEeeCCCC-CCCchhhhhhHH----HHHHHHHHHcc
Confidence 2222221 12221 12222 3567899999999887 666555555544 45788899999
Q ss_pred CCCEEEEEEecCC--CHHHHHHHHhcCCCeeEEecCCCCCCCCceEEEEEeeccC
Q 025715 159 EGGKFIAKIFRGK--DTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFP 211 (249)
Q Consensus 159 ~gG~lv~k~~~~~--~~~~l~~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~g~~~ 211 (249)
|||.||+|+|.+. +..+.++.+++.|....+.+| .||.++.|.|+||.+...
T Consensus 167 ~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR~P-~SRnst~EmY~Vs~~~~n 220 (257)
T d2p41a1 167 NNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVSNASGN 220 (257)
T ss_dssp TTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCCCC
T ss_pred cCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEcCC-CCccccceeEEeeccccc
Confidence 9999999999854 455677778888988888888 899999999999766444
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.50 E-value=2.1e-14 Score=118.91 Aligned_cols=98 Identities=22% Similarity=0.274 Sum_probs=78.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
++||++|||+|||+|.++..++++. ++|+|||+++.. .++++.++++|+.+.+
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~---------------~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~- 77 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYV---------------QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP- 77 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhC---------------CeEEEEeCChhhhhhhhhhhccccccccccccccccccc-
Confidence 5899999999999999999998763 589999999732 2467899999998754
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+++++||+|+|..++.+. .+. ..++..+.++|||||.+++..+..
T Consensus 78 -------~~~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 78 -------FPDDSFDIITCRYAAHHF----SDV-------RKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp -------SCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEECB
T ss_pred -------ccccccceeeeeceeecc----cCH-------HHHHHHHHHeeCCCcEEEEEEcCC
Confidence 467899999998765432 122 257889999999999999876643
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.47 E-value=6.3e-14 Score=115.10 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=76.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
++++++|||+|||+|.++..++++. .+|+|+|+++.. ..++++++++|+.+.+
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~---------------~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~- 76 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFV---------------KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP- 76 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-
T ss_pred CCCcCEEEEecccCcHHHHHHHHhC---------------CEEEEEECCHHHHhhhhhccccccccccccccccccccc-
Confidence 4788999999999999999988653 589999999731 2478899999998864
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
+++++||+|+|.....+. .+. ..++..+.++|||||.|++..+..
T Consensus 77 -------~~~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 77 -------FTDERFHIVTCRIAAHHF----PNP-------ASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp -------SCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred -------cccccccccccccccccc----CCH-------HHHHHHHHHhcCCCcEEEEEeCCC
Confidence 456899999998765432 122 257889999999999999876643
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=4.8e-13 Score=113.67 Aligned_cols=141 Identities=17% Similarity=0.127 Sum_probs=103.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
..+.+|||||||+|..+..++...+ ..+|+|+|+++.+ .+.+++++++|+.+.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p-------------~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~--- 170 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERP-------------DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--- 170 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-------------TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---
T ss_pred ccccceeeeehhhhHHHHHHHhhCC-------------cceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc---
Confidence 3467899999999999999998874 6899999999853 245799999998764
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCC-------CCc-------CHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGL-------HDM-------DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~-------~~~-------~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~ 174 (249)
+.+.+||+|+||++.-.... ... ....-...++..+..+.++|+|||.+++.+ ......
T Consensus 171 ------~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi-g~~q~~ 243 (274)
T d2b3ta1 171 ------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GWQQGE 243 (274)
T ss_dssp ------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CSSCHH
T ss_pred ------cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE-CchHHH
Confidence 34568999999985321110 000 011234566788999999999999999954 344455
Q ss_pred HHHHHHhcC-CCeeEEecCCCCCCCCceEEEEEe
Q 025715 175 LLYCQLKLF-FPVVTFAKPKSSRNSSIEAFAVCE 207 (249)
Q Consensus 175 ~l~~~l~~~-f~~v~~~kP~~sr~~s~E~y~v~~ 207 (249)
.+..++... |..+.++|..+.+ .++++++
T Consensus 244 ~v~~~l~~~gf~~i~~~kDl~g~----~R~v~~r 273 (274)
T d2b3ta1 244 AVRQAFILAGYHDVETCRDYGDN----ERVTLGR 273 (274)
T ss_dssp HHHHHHHHTTCTTCCEEECTTSS----EEEEEEE
T ss_pred HHHHHHHHCCCCeEEEEECCCCC----ceEEEEe
Confidence 666666544 9999999988776 4778775
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.42 E-value=3.1e-13 Score=114.88 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=78.4
Q ss_pred cCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCC
Q 025715 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDIT 103 (249)
Q Consensus 36 ~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~ 103 (249)
..-+.+|.+|||+|||+|+++..++++.+ ..|+|+|+++.. .+ .++++.++|+.
T Consensus 62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~ 127 (282)
T d2o57a1 62 TGVLQRQAKGLDLGAGYGGAARFLVRKFG--------------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 127 (282)
T ss_dssp TTCCCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT
T ss_pred hcCCCCCCEEEEeCCCCcHHHhhhhccCC--------------cEEEEEeccchhhhhhhcccccccccccccccccccc
Confidence 33467899999999999999999998764 689999999842 12 47899999998
Q ss_pred ChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 104 ~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+ +++++||+|+|..++... .+. ..++..+.++|||||.|++..+
T Consensus 128 ~l~--------~~~~sfD~V~~~~~l~h~----~d~-------~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 128 EIP--------CEDNSYDFIWSQDAFLHS----PDK-------LKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp SCS--------SCTTCEEEEEEESCGGGC----SCH-------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc--------ccccccchhhccchhhhc----cCH-------HHHHHHHHHhcCCCcEEEEEEe
Confidence 864 456899999997654332 122 2478899999999999998755
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.5e-13 Score=113.08 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=79.2
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCce
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVI 96 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~ 96 (249)
+..+.+.++ ++||.+|||+|||+|.++..++++.+ +.|+|||+++.. .+ ++++
T Consensus 22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~--------------~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~ 86 (245)
T d1nkva_ 22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG--------------ITGTGIDMSSLFTAQAKRRAEELGVSERVH 86 (245)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC--------------CEEEEEecccchhhHHHHHHHHhhccccch
Confidence 334444444 47899999999999999999987654 799999999732 12 3589
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++.+|+.+. +.+++||+|+|-.+..... +. ..++..+.++|||||.+++...
T Consensus 87 ~~~~d~~~~---------~~~~~fD~v~~~~~~~~~~--d~---------~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 87 FIHNDAAGY---------VANEKCDVAACVGATWIAG--GF---------AGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp EEESCCTTC---------CCSSCEEEEEEESCGGGTS--SS---------HHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhhhHHhhc---------cccCceeEEEEEehhhccC--CH---------HHHHHHHHHHcCcCcEEEEEec
Confidence 999999874 2467899999987654332 12 2478889999999999998643
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.4e-12 Score=111.41 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=88.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+||||||.|.++++.+. ++.|+|+|+++.+. +.++.....|.....
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~-------------~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~-- 165 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAP-------------EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-- 165 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCT-------------TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH--
T ss_pred cccceeEeccCccccchhhhhhhhh-------------hhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch--
Confidence 6789999999999999999998753 58999999998651 233333333333221
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCC--CcCH---------HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLH--DMDE---------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~--~~~~---------~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
......||.|+.|++++..|.. +.+. .....++..+|..|.++|||||.+|..+++ .++..
T Consensus 166 -----~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~ 240 (284)
T d1sqga2 166 -----WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSL 240 (284)
T ss_dssp -----HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHH
T ss_pred -----hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHH
Confidence 1234689999999988776642 2211 234557889999999999999999998885 34445
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.++++++
T Consensus 241 vv~~~l~~~ 249 (284)
T d1sqga2 241 QIKAFLQRT 249 (284)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 566677764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.39 E-value=5.2e-13 Score=107.57 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=82.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~ 106 (249)
.++.+|||+|||+|.++..+++.. ..|+++|+++.. .+ .+++++++|+.+.
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~---------------~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~- 114 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEV---------------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN- 114 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-
T ss_pred CCCCeEEEEeecCChhHHHHHhhc---------------cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh-
Confidence 578999999999999999888643 589999999742 12 3578889998763
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcCCCe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPV 186 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~f~~ 186 (249)
+.+++||+|++|++.... . +.....+..+.++|+|||.+++.+........+...++..|..
T Consensus 115 --------~~~~~fD~Ii~~~p~~~~-----~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~ 176 (194)
T d1dusa_ 115 --------VKDRKYNKIITNPPIRAG-----K-----EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGN 176 (194)
T ss_dssp --------CTTSCEEEEEECCCSTTC-----H-----HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSC
T ss_pred --------hccCCceEEEEcccEEec-----c-----hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCc
Confidence 346799999999754221 1 1234578889999999999987554333344555556666665
Q ss_pred eEE
Q 025715 187 VTF 189 (249)
Q Consensus 187 v~~ 189 (249)
+..
T Consensus 177 ~~~ 179 (194)
T d1dusa_ 177 VET 179 (194)
T ss_dssp CEE
T ss_pred EEE
Confidence 554
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.38 E-value=4.4e-13 Score=112.49 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=82.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~ 106 (249)
++||.+|||+|||+|+++.++++.++ +.++|+++|+++.. ...++++..+|+.+.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~------------~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~- 149 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALN------------GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF- 149 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHT------------TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhC------------CCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-
Confidence 38999999999999999999999886 57899999999731 235788999998763
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 185 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~ 185 (249)
+.+..||.|+.|+.-.+ .++..+.++|||||.|++-+-..+....+...++.. |.
T Consensus 150 --------~~~~~fD~V~ld~p~p~----------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 150 --------ISDQMYDAVIADIPDPW----------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp --------CCSCCEEEEEECCSCGG----------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred --------cccceeeeeeecCCchH----------------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence 35678999999874211 257788999999999987543222233444444433 54
Q ss_pred ee
Q 025715 186 VV 187 (249)
Q Consensus 186 ~v 187 (249)
.+
T Consensus 206 ~i 207 (250)
T d1yb2a1 206 HL 207 (250)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=2.3e-12 Score=106.54 Aligned_cols=122 Identities=20% Similarity=0.159 Sum_probs=87.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
++||++|||||||+|.++.++++.++ +.++|+|||+++.. ...++..+.+|...+...
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG------------~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~- 137 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVG------------WEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEY- 137 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHC------------TTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGG-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhC------------CCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccc-
Confidence 48999999999999999999999997 57999999999832 235677788888876531
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC-----CCHH----HHHHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-----KDTS----LLYCQL 180 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~-----~~~~----~l~~~l 180 (249)
......+|+|++|.... +. ...++..+.+.|||||.+++.+... .... ++..++
T Consensus 138 ----~~~~~~vD~i~~d~~~~-------~~------~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~ 200 (227)
T d1g8aa_ 138 ----RALVPKVDVIFEDVAQP-------TQ------AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL 200 (227)
T ss_dssp ----TTTCCCEEEEEECCCST-------TH------HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH
T ss_pred ----cccccceEEEEEEcccc-------ch------HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH
Confidence 11236899999986421 11 1346888999999999999866521 1222 233444
Q ss_pred hcCCCeeEEe
Q 025715 181 KLFFPVVTFA 190 (249)
Q Consensus 181 ~~~f~~v~~~ 190 (249)
+..|+-+..+
T Consensus 201 ~~gf~iie~i 210 (227)
T d1g8aa_ 201 SEYFEVIERL 210 (227)
T ss_dssp HTTSEEEEEE
T ss_pred HcCCEEEEEE
Confidence 5567766654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=6.5e-13 Score=112.23 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=85.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------------CCCCceEeecCCCCh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------------~~~~v~~~~gDi~~~ 105 (249)
+||++|||+|||+|+.+.++++.++ +.++|+++|+++.. ...++.+.++|+.+.
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vg------------p~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVG------------PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC------------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhC------------CCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 7999999999999999999999987 67999999999731 135788899998764
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh-c-C
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK-L-F 183 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~-~-~ 183 (249)
. +.+.+||.|+.|+.-.+ .++..+.++|||||.+++-+-.-+....+...++ . .
T Consensus 163 ~--------~~~~~fDaV~ldlp~P~----------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~ 218 (264)
T d1i9ga_ 163 E--------LPDGSVDRAVLDMLAPW----------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQC 218 (264)
T ss_dssp C--------CCTTCEEEEEEESSCGG----------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSS
T ss_pred c--------ccCCCcceEEEecCCHH----------------HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCC
Confidence 3 45689999999974221 3577889999999999875433333445555554 2 3
Q ss_pred CCeeEE
Q 025715 184 FPVVTF 189 (249)
Q Consensus 184 f~~v~~ 189 (249)
|..++.
T Consensus 219 f~~i~~ 224 (264)
T d1i9ga_ 219 WTEPRA 224 (264)
T ss_dssp BCCCEE
T ss_pred eecceE
Confidence 765554
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=1.2e-12 Score=113.24 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=91.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+.+.++++.+. ..+.++|+|+++.+ ...++.....|......
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~------------~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~- 181 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMR------------NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE- 181 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTT------------TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-
T ss_pred CccceeeecccchhhhhHhhhhhcc------------cccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc-
Confidence 6799999999999999999999886 56899999999743 23566666666554321
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcC--------H---HHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCCHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD--------E---FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~--------~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~~~ 174 (249)
....||.|+.|++++..|....+ . .....++..++..|.++|||||.+|..+++ .++..
T Consensus 182 -------~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~ 254 (313)
T d1ixka_ 182 -------LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEF 254 (313)
T ss_dssp -------GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHH
T ss_pred -------ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHH
Confidence 24689999999988777753221 1 123457788999999999999999988875 34455
Q ss_pred HHHHHHhcC
Q 025715 175 LLYCQLKLF 183 (249)
Q Consensus 175 ~l~~~l~~~ 183 (249)
.+.++++++
T Consensus 255 VV~~~L~~~ 263 (313)
T d1ixka_ 255 VIQWALDNF 263 (313)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 566677653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=5.9e-12 Score=107.22 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=77.6
Q ss_pred hHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCc
Q 025715 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGV 95 (249)
Q Consensus 28 KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v 95 (249)
|+..+.++.+ +++|.+|||+|||+|+++.+++++.+ ++|+|+|+++.. .+ ..+
T Consensus 40 k~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g--------------~~v~gi~ls~~q~~~a~~~~~~~~l~~~~ 104 (280)
T d2fk8a1 40 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD--------------VNVIGLTLSKNQHARCEQVLASIDTNRSR 104 (280)
T ss_dssp HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHTSCCSSCE
T ss_pred HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc--------------eeEEEecchHHHHHHHHHHHHhhccccch
Confidence 4445555555 58999999999999999999998875 799999999732 12 234
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+...|..+ + +++||.|+|-..+...+..+. ...++.+.++|||||.+++...
T Consensus 105 ~~~~~d~~~----------~-~~~fD~i~si~~~eh~~~~~~---------~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 105 QVLLQGWED----------F-AEPVDRIVSIEAFEHFGHENY---------DDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp EEEESCGGG----------C-CCCCSEEEEESCGGGTCGGGH---------HHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhhhhhh----------h-ccchhhhhHhhHHHHhhhhhH---------HHHHHHHHhccCCCceEEEEEe
Confidence 555555443 2 368999999877655443222 2468889999999999998764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.4e-12 Score=110.37 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=78.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.++.+|||+|||+|.++..+++..+ +..++|+|+++.. ..+++++.++|+.+.+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~-------------~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~------- 142 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALP-------------EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP------- 142 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-------------TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS-------
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC-------------CCEEEEecchHhhhhhhhcccccccceeeehhhcc-------
Confidence 4678999999999999999998764 5799999999843 2478999999998864
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHH
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 177 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~ 177 (249)
+.+++||+|++...+.. +.++.++|||||.|++.+.......++.
T Consensus 143 -~~~~sfD~v~~~~~~~~------------------~~e~~rvLkpgG~l~~~~p~~~~l~el~ 187 (268)
T d1p91a_ 143 -FSDTSMDAIIRIYAPCK------------------AEELARVVKPGGWVITATPGPRHLMELK 187 (268)
T ss_dssp -BCTTCEEEEEEESCCCC------------------HHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred -CCCCCEEEEeecCCHHH------------------HHHHHHHhCCCcEEEEEeeCCcchHHHH
Confidence 46789999998654421 3456889999999999887666655543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.31 E-value=8.3e-13 Score=107.38 Aligned_cols=98 Identities=22% Similarity=0.243 Sum_probs=73.5
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~ 108 (249)
++++.+|||+|||+|.++..+++. + .+|+|+|+++.. .-..+.++.+|+.+.+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~-~--------------~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~-- 97 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY-G--------------FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-- 97 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC--
T ss_pred cCCCCEEEEECCCcchhhhhHhhh-h--------------cccccccccccchhhhhhhhcccccccccccccccccc--
Confidence 578889999999999999999864 2 689999999732 1134677888988754
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+++++||+|+|..+..+. +... ...+++.+.++|||||.|++.+.
T Consensus 98 ------~~~~~fD~I~~~~~l~~~-----~~~d----~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 98 ------FEDKTFDYVIFIDSIVHF-----EPLE----LNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp ------SCTTCEEEEEEESCGGGC-----CHHH----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------ccCcCceEEEEecchhhC-----ChhH----HHHHHHHHHHHcCcCcEEEEEEc
Confidence 456899999997654331 1111 23578899999999999998654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.31 E-value=4.6e-12 Score=109.78 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
+|.+|||+|||+|+++.+++.. + .+|+++|+++.. .+.+++++++|+.+.. +
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g-~--------------~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~--~ 207 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG-F--------------REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL--R 207 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-E--------------EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH--H
T ss_pred CCCeeeccCCCCcHHHHHHHhc-C--------------CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh--h
Confidence 6899999999999999988743 3 689999999842 2467888999987632 2
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC-CCHHHHHHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYCQL 180 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~-~~~~~l~~~l 180 (249)
.+.. ..++||+|++|++....+. .+.....+.+..++..+.++|+|||.|++.++.. -+..++...+
T Consensus 208 ~~~~--~~~~fD~Vi~DpP~~~~~~--~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v 275 (318)
T d1wxxa2 208 RLEK--EGERFDLVVLDPPAFAKGK--KDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV 275 (318)
T ss_dssp HHHH--TTCCEEEEEECCCCSCCST--TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred hhHh--hhcCCCEEEEcCCccccch--HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHH
Confidence 2221 3468999999986543332 2334445556778899999999999999877754 3444444444
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=4.5e-12 Score=108.20 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=80.5
Q ss_pred HhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceE
Q 025715 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQ 97 (249)
Q Consensus 30 ~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~ 97 (249)
-.+-++.+ +++|.+|||+|||.|+.+.++++..+ ++|+|+++++.. ...++++
T Consensus 52 ~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g--------------~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~ 116 (285)
T d1kpga_ 52 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD--------------VNVVGLTLSKNQANHVQQLVANSENLRSKRV 116 (285)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEE
T ss_pred HHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC--------------cceEEEeccHHHHHHHHHHHHhhhhhhhhHH
Confidence 33444444 48999999999999999999998875 899999999732 1346777
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
..+|..+. +++||.|+|-..+...+..+. ...+..+.++|||||.+++.++.
T Consensus 117 ~~~d~~~~-----------~~~fD~i~si~~~eh~~~~~~---------~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 117 LLAGWEQF-----------DEPVDRIVSIGAFEHFGHERY---------DAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp EESCGGGC-----------CCCCSEEEEESCGGGTCTTTH---------HHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHhhhhcc-----------cccccceeeehhhhhcCchhH---------HHHHHHHHhhcCCCCcEEEEEEe
Confidence 78887542 368999999887766554332 24688899999999999987663
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8e-12 Score=107.05 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=89.7
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
++|.+|||+|||||+.+.+++..++ +.++|+|+|+++.+ .+.++.+...|.......
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~------------~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~ 160 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLK------------NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS 160 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred CccceEEecccchhhHHHHHHHHhc------------CCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc
Confidence 6799999999999999999999886 56899999998742 245677777776653210
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcC-------------HHHHHHHHHHHHHHHHHhccCCCEEEEEEec---CCC
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD-------------EFVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKD 172 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~-------------~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~---~~~ 172 (249)
.-..++||.|+.|++++..|..... ......++..++..|. .|+|||.+|..+++ .++
T Consensus 161 -----~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~EN 234 (293)
T d2b9ea1 161 -----DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEEN 234 (293)
T ss_dssp -----CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGT
T ss_pred -----ccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHh
Confidence 0012579999999987776642211 1123445677777777 47999999988875 344
Q ss_pred HHHHHHHHhcCCCeeEE
Q 025715 173 TSLLYCQLKLFFPVVTF 189 (249)
Q Consensus 173 ~~~l~~~l~~~f~~v~~ 189 (249)
...+.++++++...+.+
T Consensus 235 e~vV~~~L~~~~~~~~l 251 (293)
T d2b9ea1 235 EDVVRDALQQNPGAFRL 251 (293)
T ss_dssp HHHHHHHHTTSTTTEEE
T ss_pred HHHHHHHHHhCCCCEEe
Confidence 55566788776544444
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.30 E-value=3.2e-12 Score=104.39 Aligned_cols=99 Identities=22% Similarity=0.156 Sum_probs=75.2
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
++||.+|||||||||..+.++++..+ +++|+|||+++.. ...++.++.+|..++....
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~-------------~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~ 120 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVD-------------EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS 120 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-------------TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhcc-------------CCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccc
Confidence 58999999999999999999999875 5799999999832 1468889999998865311
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.....+|+|++|.... .+ ...++..+.++|||||.+++...
T Consensus 121 -----~~~~~vd~v~~~~~~~------~~-------~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 121 -----GIVEKVDLIYQDIAQK------NQ-------IEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp -----TTCCCEEEEEECCCST------TH-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----cccceEEEEEecccCh------hh-------HHHHHHHHHHHhccCCeEEEEEE
Confidence 1224688888875321 11 12467888999999999998654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.29 E-value=2.1e-12 Score=103.32 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=78.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
++|.+|||+|||+|.++..++... ++|+|+|+++.. .+ ++++++++|+.+..
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~---------------~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~- 95 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRV---------------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL- 95 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS---------------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-
T ss_pred CCCCEEEEEECCeEcccccccccc---------------eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-
Confidence 789999999999999999987642 699999999742 13 57889999875432
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~ 183 (249)
.....||+|++++... . ....+..+.+.|||||++++.....++...+...++.+
T Consensus 96 -------~~~~~~D~v~~~~~~~-------~-------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 96 -------CKIPDIDIAVVGGSGG-------E-------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL 150 (186)
T ss_dssp -------TTSCCEEEEEESCCTT-------C-------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred -------cccCCcCEEEEeCccc-------c-------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHc
Confidence 2447899999986321 1 12467788999999999998655444455555556554
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=7e-12 Score=107.32 Aligned_cols=114 Identities=11% Similarity=-0.010 Sum_probs=78.6
Q ss_pred hHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCc
Q 025715 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGV 95 (249)
Q Consensus 28 KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v 95 (249)
|+..+.++.+ +++|.+|||+|||.|+++.+++++.+ ++|+|+++++.. .+ ..+
T Consensus 49 k~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g--------------~~v~git~s~~q~~~a~~~~~~~~l~~~v 113 (291)
T d1kpia_ 49 KRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD--------------VNVIGLTLSENQYAHDKAMFDEVDSPRRK 113 (291)
T ss_dssp HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC--------------cceeeccchHHHHHHHHHHHHhhccchhh
Confidence 3444445554 48999999999999999999998876 799999999842 12 235
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+...|... .+++||.|+|-..+...+..... ...+-....+..+.++|||||.|++.++.
T Consensus 114 ~~~~~d~~~-----------~~~~fD~i~sie~~eH~~~~~~~--~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 114 EVRIQGWEE-----------FDEPVDRIVSLGAFEHFADGAGD--AGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp EEEECCGGG-----------CCCCCSEEEEESCGGGTTCCSSC--CSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred hhhhhcccc-----------cccccceEeechhHHhcchhhhh--hHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 555555422 35789999999876543321000 00001235788999999999999998774
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.28 E-value=1e-11 Score=107.75 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=86.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~ 106 (249)
+++|.+|||+|||+|+|+.+++.. + ..+|+++|+++.. .+ .+++++++|+.+..
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~-g-------------a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~ 208 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIA-G-------------ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM 208 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred cCCCCeeecccCcccchhhhhhhc-C-------------CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhh
Confidence 368999999999999999998865 2 3689999999842 12 35788899987532
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC-CCHHHHHHHH
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYCQL 180 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~-~~~~~l~~~l 180 (249)
..+. ..+.+||+|++|++....+. .+.....+.+...+..|.++|+|||.|++.++.. -+...+...+
T Consensus 209 --~~~~--~~~~~fD~Vi~DpP~~~~~~--~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v 277 (324)
T d2as0a2 209 --EKLQ--KKGEKFDIVVLDPPAFVQHE--KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMI 277 (324)
T ss_dssp --HHHH--HTTCCEEEEEECCCCSCSSG--GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred --HHHH--hccCCCCchhcCCccccCCH--HHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHH
Confidence 1221 13578999999986543322 2334445566778999999999999999877654 3444444443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.25 E-value=8.3e-12 Score=104.18 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=74.7
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~ 106 (249)
.+++.+|||||||+|+.+..+++.. .+.|+|+|+++.. ...++.+.++|+....
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~--------------~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~ 87 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG--------------IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 87 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT--------------CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC--------------CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc
Confidence 4688999999999999998887753 2689999999842 1135788999986543
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
. ..+++||+|+|..+..... .++ +....++..+.++|||||.|++.+..
T Consensus 88 ~-------~~~~~fD~V~~~~~l~~~~---~~~----~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 88 M-------DLGKEFDVISSQFSFHYAF---STS----ESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp C-------CCSSCEEEEEEESCGGGGG---SSH----HHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred c-------cccccceEEEEcceeeecC---CCH----HHHHHHHHHHhceeCCCCEEEEEecC
Confidence 1 1346899999987543211 111 12346788999999999999986653
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6.9e-12 Score=108.83 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=81.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------------CCCCce
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------------PIEGVI 96 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------------~~~~v~ 96 (249)
++||.+|||+|||+|+++.++++.++ ++++|+++|+++.. ...++.
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg------------~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~ 163 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVG------------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 163 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC------------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred CCCCCEEEEecccccHHHHHHHHHhC------------CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence 37999999999999999999999987 67999999998621 024688
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
+..+|+.+... .+....||.|+.|+.-.+ .++..+.++|||||.|++-+-.-.....+
T Consensus 164 ~~~~di~~~~~------~~~~~~fD~V~LD~p~P~----------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~ 221 (324)
T d2b25a1 164 FIHKDISGATE------DIKSLTFDAVALDMLNPH----------------VTLPVFYPHLKHGGVCAVYVVNITQVIEL 221 (324)
T ss_dssp EEESCTTCCC-------------EEEEEECSSSTT----------------TTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred EEecchhhccc------ccCCCCcceEeecCcCHH----------------HHHHHHHHhccCCCEEEEEeCCHHHHHHH
Confidence 89999976421 134568999999974221 24677899999999999744222223344
Q ss_pred HHHHhc---CCCeeEEe
Q 025715 177 YCQLKL---FFPVVTFA 190 (249)
Q Consensus 177 ~~~l~~---~f~~v~~~ 190 (249)
...|+. .|..+.++
T Consensus 222 ~~~l~~~~~~f~~i~~~ 238 (324)
T d2b25a1 222 LDGIRTCELALSCEKIS 238 (324)
T ss_dssp HHHHHHHTCCEEEEEEE
T ss_pred HHHHHHcCCCceeeEEE
Confidence 444542 36666554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=5.8e-12 Score=106.53 Aligned_cols=115 Identities=20% Similarity=0.190 Sum_probs=82.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C-CCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~-~~~v~~~~gDi~~~~ 106 (249)
++||++|||+|||+|+++.++++.++ +.++|+++|+++.. . ..++.+..+|+..
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~------------~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-- 166 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVG------------SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-- 166 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTT------------TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG--
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhC------------CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc--
Confidence 37999999999999999999999886 57899999999842 1 2456666777643
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CC
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 185 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~ 185 (249)
.+....+|.|+.|++-.+ .++..+.++|||||.|++-+...+....+...++.. |.
T Consensus 167 -------~~~~~~~D~V~~d~p~p~----------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 167 -------GFDEKDVDALFLDVPDPW----------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp -------CCSCCSEEEEEECCSCGG----------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred -------cccccceeeeEecCCCHH----------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 245578999999874211 357888999999999998553333344555556543 65
Q ss_pred eeEEe
Q 025715 186 VVTFA 190 (249)
Q Consensus 186 ~v~~~ 190 (249)
.+.++
T Consensus 224 ~i~~~ 228 (266)
T d1o54a_ 224 RIEVW 228 (266)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.4e-11 Score=98.42 Aligned_cols=120 Identities=11% Similarity=0.007 Sum_probs=84.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+|||||||+|.++..++...+ .+|+|||+++.. ..+++++.++|+.+..
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-- 122 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF--------------REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-- 122 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC--------------SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC--------------CEEEEeecCHHHhhccccccccccccccccccccccccc--
Confidence 4568999999999999988865543 589999999832 1245788999998753
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC--------------CHH
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK--------------DTS 174 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~--------------~~~ 174 (249)
+..++||+|++....... ... ....++..+.++|||||.+++...... ...
T Consensus 123 ------~~~~~fD~I~~~~~l~h~-----~~~----~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~ 187 (222)
T d2ex4a1 123 ------PEPDSYDVIWIQWVIGHL-----TDQ----HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLD 187 (222)
T ss_dssp ------CCSSCEEEEEEESCGGGS-----CHH----HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHH
T ss_pred ------cccccccccccccccccc-----hhh----hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHH
Confidence 346799999997654332 111 123578889999999999998644211 234
Q ss_pred HHHHHHhcC-CCeeEEe
Q 025715 175 LLYCQLKLF-FPVVTFA 190 (249)
Q Consensus 175 ~l~~~l~~~-f~~v~~~ 190 (249)
.+..++... |+.+...
T Consensus 188 ~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 188 VVRRIICSAGLSLLAEE 204 (222)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHcCCEEEEEE
Confidence 555666543 7766654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.24 E-value=6.8e-12 Score=100.93 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=74.8
Q ss_pred cCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCC
Q 025715 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN 104 (249)
Q Consensus 36 ~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~ 104 (249)
...+++| +|||+|||+|..+.+++++. .+|+|+|+++.. .++++++..+|+.+
T Consensus 26 ~~~~~~g-rvLDiGcG~G~~~~~la~~g---------------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~ 89 (198)
T d2i6ga1 26 AKVVAPG-RTLDLGCGNGRNSLYLAANG---------------YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT 89 (198)
T ss_dssp HTTSCSC-EEEEETCTTSHHHHHHHHTT---------------CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT
T ss_pred cccCCCC-cEEEECCCCCHHHHHHHHHh---------------hhhccccCcHHHHHHHHHHhhhccccchhhhheeccc
Confidence 3445665 99999999999999998763 589999999842 24567888888877
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.. .+++||+|++...+.... .+. ..+.++.+.++|+|||.+++..+.
T Consensus 90 ~~---------~~~~fD~I~~~~~~~~~~---~~~------~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 90 LT---------FDGEYDFILSTVVMMFLE---AQT------IPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp CC---------CCCCEEEEEEESCGGGSC---TTH------HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cc---------ccccccEEEEeeeeecCC---HHH------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 53 247899999987654321 111 235788899999999999987653
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.24 E-value=1.8e-11 Score=105.92 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=82.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~ 106 (249)
.+|.+|||||||+|+|+.+++.. + ..+|++||+++.. .+ .+++++++|+.+.
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~-g-------------a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~- 207 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMG-G-------------AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY- 207 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-T-------------BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH-
T ss_pred hCCCceeecCCCCcHHHHHHHhC-C-------------CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH-
Confidence 57899999999999999887753 2 3689999999853 12 4678899998653
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC-CCHHHHHHHHhc
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYCQLKL 182 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~-~~~~~l~~~l~~ 182 (249)
++...+ .+.+||+|++|++.-....... ....+.+...+..|.++|+|||.|++.++.+ .+..++...+..
T Consensus 208 -l~~~~~--~~~~fD~Ii~DPP~f~~~~~~~--~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~ 279 (317)
T d2b78a2 208 -FKYARR--HHLTYDIIIIDPPSFARNKKEV--FSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEK 279 (317)
T ss_dssp -HHHHHH--TTCCEEEEEECCCCC-----CC--CCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred -HHHHHh--hcCCCCEEEEcChhhccchhHH--HHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHH
Confidence 222222 3468999999975322111111 1123334567888999999999999877753 345555554443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.22 E-value=2.2e-11 Score=99.71 Aligned_cols=101 Identities=18% Similarity=0.095 Sum_probs=73.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~ 106 (249)
++++.+|||||||+|..+..+++.... +..+|+|+|+++.. ....+++..+|+.+.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~-----------~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~- 104 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQ-----------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV- 104 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCC-----------SSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcC-----------CCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-
Confidence 478999999999999999999876531 35799999999831 123466777887653
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
....+|+|++........ .+. ...++..+.+.|||||.|++....
T Consensus 105 ---------~~~~~d~i~~~~~l~~~~---~~d------~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 105 ---------EIKNASMVILNFTLQFLP---PED------RIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp ---------CCCSEEEEEEESCGGGSC---GGG------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------ccccceeeEEeeeccccC---hhh------HHHHHHHHHHhCCCCceeeccccc
Confidence 346789999865443221 111 135789999999999999987553
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.22 E-value=1.7e-11 Score=102.93 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=79.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CC--CceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~--~v~~~~gDi~~~~~~~ 109 (249)
++|.+|||+|||+|.++.++++ .+ .+|+|+|+++.+. .. +++++++|+.+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~-~g--------------~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~----- 178 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEK-LG--------------GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA----- 178 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH-TT--------------CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-----
T ss_pred CccCEEEEcccchhHHHHHHHh-cC--------------CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-----
Confidence 6899999999999999987765 34 6899999999641 11 34667777643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhcC-CCeeE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVT 188 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~~-f~~v~ 188 (249)
.+..++||+|+++...+ .....+..+.++|||||.|++.-+.......+...++.. |+.+.
T Consensus 179 ----~~~~~~fD~V~ani~~~--------------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 179 ----ALPFGPFDLLVANLYAE--------------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ----HGGGCCEEEEEEECCHH--------------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred ----cccccccchhhhccccc--------------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEE
Confidence 23457899999975311 123456677899999999998755555666777666654 65544
Q ss_pred E
Q 025715 189 F 189 (249)
Q Consensus 189 ~ 189 (249)
.
T Consensus 241 ~ 241 (254)
T d2nxca1 241 E 241 (254)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.20 E-value=5.5e-12 Score=103.22 Aligned_cols=92 Identities=27% Similarity=0.304 Sum_probs=70.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+++|++|||+|||+|.++..+++.++ +.+.|+++|+++.. .+.++.++++|..+..
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~------------~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~- 139 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVG------------EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV- 139 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC------------TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-
T ss_pred ccccceEEEecCccchhHHHHHHHhC------------CCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc-
Confidence 47999999999999999999999887 56899999999732 2567888889876532
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
...++||+|++++++.. ... ...+.|||||+|++-+
T Consensus 140 -------~~~~~fD~I~~~~~~~~-----~p~------------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 140 -------PEFSPYDVIFVTVGVDE-----VPE------------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp -------GGGCCEEEEEECSBBSC-----CCH------------HHHHHEEEEEEEEEEB
T ss_pred -------ccccchhhhhhhccHHH-----hHH------------HHHHhcCCCcEEEEEE
Confidence 12467999999875432 111 2356799999999854
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.18 E-value=2.1e-11 Score=103.51 Aligned_cols=96 Identities=22% Similarity=0.170 Sum_probs=73.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C-CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~-~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..+++..+ ...+|+|+|+++.. . -.++++.++|+.+.+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~------------~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~--- 90 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLP------------EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE--- 90 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSC------------TTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC---
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCC------------CCCEEEEEecchhHhhhhhccccccccccccccccccccc---
Confidence 4568999999999999999988765 35789999999732 1 125788999998753
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+ +++||+|+|....... .+. ..++..+.++|||||.+++..
T Consensus 91 -----~-~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 91 -----L-NDKYDIAICHAFLLHM----TTP-------ETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp -----C-SSCEEEEEEESCGGGC----SSH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred -----c-cCCceEEEEehhhhcC----CCH-------HHHHHHHHHHcCcCcEEEEEE
Confidence 2 3579999998765432 122 247889999999999999865
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.18 E-value=5.9e-11 Score=98.10 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=71.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
++||.+|||||||+|.++.++++..+ .+.|+|||+++.. ..+++..+.+|...+....
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~-------------~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~ 138 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIAD-------------KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA 138 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-------------TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGT
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCC-------------CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccc
Confidence 48999999999999999999998753 6899999999832 2467778888988765310
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.....+|+++++... .+. ...++..+.+.|||||.+++...
T Consensus 139 -----~~~~~v~~i~~~~~~-------~~~------~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 139 -----NIVEKVDVIYEDVAQ-------PNQ------AEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp -----TTCCCEEEEEECCCS-------TTH------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----cccceeEEeeccccc-------hHH------HHHHHHHHHHhcccCceEEEEee
Confidence 011345556665421 121 13467888999999999998654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.16 E-value=1e-11 Score=102.95 Aligned_cols=96 Identities=26% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~~ 110 (249)
++.+|||+|||+|.++..++++. .+|+|+|+++.. .-.+++++++|+.+.+
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g---------------~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~---- 97 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF---------------KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN---- 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---------------SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC----
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC---------------CccEeeccchhhhhhccccccccCccceeeccchhhhc----
Confidence 45799999999999999998752 589999999842 1236889999998754
Q ss_pred HHHhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ .++||+|+|-.. ..+ . .... -...++..+.++|+|||.|++.+.
T Consensus 98 ----~-~~~fD~i~~~~~~~~~--~--~~~~----~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 98 ----I-NRKFDLITCCLDSTNY--I--IDSD----DLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp ----C-SCCEEEEEECTTGGGG--C--CSHH----HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ----c-cccccccceeeeeeec--c--CCHH----HHHHHHHHHHHhCCCCeEEEEEeC
Confidence 2 468999998431 111 1 1111 124578899999999999998654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.16 E-value=3.1e-11 Score=98.07 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=76.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
+.+..|||+|||+|.++..+++..+ +..++|+|+++.. .+.|+.++++|+.+.
T Consensus 28 ~~~PlvLeIGcG~G~~~~~lA~~~p-------------~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l--- 91 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQFISGMAKQNP-------------DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL--- 91 (204)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT-------------TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH---
T ss_pred CCCceEEEEEecCcHHHHHHHHhCC-------------CCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh---
Confidence 3456899999999999999998864 6899999998731 367899999998763
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.+.+.++++|.|+...+..+.-.+ + ...++ ....+..+.++|||||.|.+.+
T Consensus 92 ---~~~~~~~~~d~v~i~fp~P~~k~~---h-~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 92 ---TDVFEPGEVKRVYLNFSDPWPKKR---H-EKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp ---HHHCCTTSCCEEEEESCCCCCSGG---G-GGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ---hcccCchhhhccccccccccchhh---h-cchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 345678899999876543321110 0 00111 1356888999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=2.1e-11 Score=100.16 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=69.6
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
++++.+|||+|||+|.++..+++. + .+|+|+|+++... -....++++|+.+.+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~------- 97 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER-G--------------FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP------- 97 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT-T--------------CEEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-------
T ss_pred cCCCCEEEEECCCCchhccccccc-c--------------eEEEEeecccccccccccccccccccccccccc-------
Confidence 357789999999999999999864 3 6999999998431 011235788887753
Q ss_pred hcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 114 HFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|+|-.. ..+. .+. ..++..+.++|||||.+++.+.
T Consensus 98 -~~~~~fD~ii~~~~~~~~~----~d~-------~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 98 -FPSGAFEAVLALGDVLSYV----ENK-------DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp -SCTTCEEEEEECSSHHHHC----SCH-------HHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccccccceeeecchhhhh----hhH-------HHHHHHHHhhcCcCcEEEEEEC
Confidence 45689999998542 1111 122 2467888999999999999764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=2.5e-11 Score=97.70 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=90.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CC-CCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~-~~v~~~~gDi~~~~~~~ 109 (249)
++|..+||+|||+|+.+.+++++.+ .++|+|+|+++.+ .. .++.+++++..+..
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~-------------~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~--- 85 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCP-------------GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD--- 85 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH---
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCC-------------CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHH---
Confidence 6789999999999999999999874 5899999999843 12 36888999887643
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHhc
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~~ 182 (249)
.+...+..++||.|+.|.+.+.... .++.+-.......+..+.++|+|||.+++..|.+.+...+...++.
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvSs~Ql--d~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVSTYQL--KGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHH--HTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcceeeeccchhHhhh--hhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 3444556679999999975421100 0111123345677899999999999999988876555555555554
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.12 E-value=6.5e-11 Score=96.99 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
++.+|||+|||+|.++..++++ + .+|+|+|+++.. .-.++.++++|+.+..
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~-g--------------~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~------- 77 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH-F--------------NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ------- 77 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT-C--------------SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-------
T ss_pred CCCcEEEEeCCCcHHHHHHHHc-C--------------CeEEEEeCcHHHhhhhhcccccccccccccccccc-------
Confidence 4569999999999999988764 2 579999999732 1247888999887643
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHH-HhccCCCEEEEEEec
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVT-HVLKEGGKFIAKIFR 169 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~-~~Lk~gG~lv~k~~~ 169 (249)
.+++||+|++.....+. .+. ..++..+. ++|+|||.+++.+..
T Consensus 78 --~~~~fD~I~~~~vleh~----~d~-------~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 78 --LPRRYDNIVLTHVLEHI----DDP-------VALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp --CSSCEEEEEEESCGGGC----SSH-------HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred --cccccccccccceeEec----CCH-------HHHHHHHHHHhcCCCceEEEEeCC
Confidence 24789999997655432 222 23455665 789999999997753
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2e-11 Score=100.63 Aligned_cols=100 Identities=14% Similarity=0.035 Sum_probs=69.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+|.+|||+|||+|.++.++++..+ .+|+++|+++.. ...++..+.+|...
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~--------------~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 112 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI--------------DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED----- 112 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--------------EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH-----
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC--------------CeEEEeCCCHHHHHHHHHHhhhcccccccccccccc-----
Confidence 5789999999999999999887543 589999999832 11345555565433
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+...+..++||.|+.|............ ....++..+.++|||||.|++
T Consensus 113 -~~~~~~~~~fD~i~fD~~~~~~~~~~~~------~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 113 -VAPTLPDGHFDGILYDTYPLSEETWHTH------QFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp -HGGGSCTTCEEEEEECCCCCBGGGTTTH------HHHHHHHTHHHHEEEEEEEEE
T ss_pred -cccccccccccceeeccccccccccccc------CHHHHHHHHHHHcCCCcEEEE
Confidence 2224566899999999754432222111 123578889999999999986
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.11 E-value=2.4e-10 Score=95.61 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=73.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+|||+|||+|.++..++.... ..|++||+++.. ..+.++++++|+.+.+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~--------------~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~---- 153 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY--------------ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT---- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--------------SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC----
T ss_pred CCCCeEEEecccCChhhHHHHhhcC--------------ceEEEEcCCHHHHHhhhccccccccceeEEccccccc----
Confidence 4567999999999999998877654 589999999732 2345788899987653
Q ss_pred HHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+++||+|++...+... .++ .....+..+.+.|+|||.++++..
T Consensus 154 ----~~~~~fD~I~~~~vl~hl----~d~-----d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 154 ----LPPNTYDLIVIQWTAIYL----TDA-----DFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp ----CCSSCEEEEEEESCGGGS----CHH-----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----cCCCccceEEeecccccc----chh-----hhHHHHHHHHHhcCCCcEEEEEec
Confidence 346789999997654321 121 123578899999999999998753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.10 E-value=2e-10 Score=94.76 Aligned_cols=95 Identities=26% Similarity=0.270 Sum_probs=69.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-C---------CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P---------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-~---------~~~v~~~~gDi~~~~~~~ 109 (249)
.++.+|||+|||+|.++..+++. + ..|+|||+++.. . -.+++++++|+.+.+
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~-~--------------~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~--- 101 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAER-G--------------YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA--- 101 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC---
T ss_pred CCCCEEEEeCCCCCccchhhccc-c--------------eEEEEEeeccccccccccccccccccchheehhhhhcc---
Confidence 45679999999999999998874 3 589999999832 0 125889999998754
Q ss_pred HHHHhcCCCcccEEEeCCC-CCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
++ ++||+|+|-.. ... .+.. -...+|..+.++|||||.|++.+
T Consensus 102 -----~~-~~fD~I~~~~~~~~~-----~~~~----~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 102 -----FK-NEFDAVTMFFSTIMY-----FDEE----DLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp -----CC-SCEEEEEECSSGGGG-----SCHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----cc-cccchHhhhhhhhhc-----CChH----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 23 68999998532 111 1111 12357889999999999999854
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.09 E-value=1.3e-10 Score=97.69 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=70.9
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~ 106 (249)
+++|.+|||+|||+|+++..++++. .++|+|+|++|.+ .+. .++++++|..+..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~--------------~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~ 170 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG--------------KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP 170 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT--------------CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC--------------CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc
Confidence 3689999999999999999998763 3699999999843 133 4888999998742
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
....||.|+++..+... ..+..|.++|++||.+.+-.+
T Consensus 171 ---------~~~~~D~Ii~~~p~~~~---------------~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 171 ---------GENIADRILMGYVVRTH---------------EFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp ---------CCSCEEEEEECCCSSGG---------------GGHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cCCCCCEEEECCCCchH---------------HHHHHHHhhcCCCCEEEEEec
Confidence 35689999998654321 245678899999999876544
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.08 E-value=1.1e-10 Score=92.29 Aligned_cols=99 Identities=12% Similarity=-0.037 Sum_probs=72.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C--------------CCCc
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--------------IEGV 95 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~--------------~~~v 95 (249)
+.||.+|||+|||+|..+.+++++ + ..|+|+|+++.. . ...+
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~-G--------------~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ-G--------------YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 82 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH-C--------------CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc-C--------------CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence 368999999999999999999976 4 799999999731 0 1245
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+++++|+.+.... ....||+|++........ + ......+..+.++|||||.+++..+
T Consensus 83 ~~~~~d~~~l~~~-------~~~~~D~i~~~~~l~~l~----~-----~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 83 EIWCGDFFALTAR-------DIGHCAAFYDRAAMIALP----A-----DMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp EEEEECCSSSTHH-------HHHSEEEEEEESCGGGSC----H-----HHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred ceecccccccccc-------cccceeEEEEEeeeEecc----h-----hhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 7888898876431 125799999866443211 1 1123577888999999999988665
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=3.7e-11 Score=98.97 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=69.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------CCCCceEeecCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDI 102 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------~~~~v~~~~gDi 102 (249)
+++|++|||+|||+|..+..+++..+ +.++|+++|+++.. ...++.+..+|.
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~------------~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVG------------CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHC------------TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhC------------CCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 47899999999999999999999886 56899999999731 124677888998
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.... .....||+|+++++... .. ....+.|||||.||+-+
T Consensus 142 ~~~~--------~~~~~fD~I~~~~~~~~-----ip------------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 142 RMGY--------AEEAPYDAIHVGAAAPV-----VP------------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGCC--------GGGCCEEEEEECSBBSS-----CC------------HHHHHTEEEEEEEEEEE
T ss_pred cccc--------chhhhhhhhhhhcchhh-----cC------------HHHHhhcCCCcEEEEEE
Confidence 6532 13468999999875432 11 12467899999999854
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=3.2e-10 Score=95.50 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=75.3
Q ss_pred hHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C---CCCc
Q 025715 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGV 95 (249)
Q Consensus 28 KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~---~~~v 95 (249)
++.++.+++.-.++..+|||+|||+|.++..++..+....+ +....++|||+++.. . ++++
T Consensus 27 ~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~-------~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~ 99 (280)
T d1jqea_ 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYP-------GVCINNEVVEPSAEQIAKYKELVAKISNLENV 99 (280)
T ss_dssp THHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHST-------TCEEEEEEECCCHHHHHHHHHHHTTCCSCTTE
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhcc-------CCceEEEEEeCcHHHHHHHHHHHhhccccccc
Confidence 34455555544466679999999999999988765421000 023478999998631 1 2233
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCC
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~ 172 (249)
.+.-.+.+..+..........+++||+|++-.+..+. .+. ..++..+.++|+|||.|++.+.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~----~d~-------~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 100 KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV----KDI-------PATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp EEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGC----SCH-------HHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred cccchhhhhhhhcchhcccCCCCceeEEEEccceecC----CCH-------HHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 2211111111111111123456899999997765432 122 24788899999999999997765443
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=6.2e-11 Score=95.49 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=69.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.++.+|||+|||+|.++..+ . +++|+|+++.. .-.++.++++|+.+.+ +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~----~---------------~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~--------~ 87 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPL----K---------------IKIGVEPSERMAEIARKRGVFVLKGTAENLP--------L 87 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHH----T---------------CCEEEESCHHHHHHHHHTTCEEEECBTTBCC--------S
T ss_pred CCCCeEEEECCCCccccccc----c---------------eEEEEeCChhhcccccccccccccccccccc--------c
Confidence 46679999999999987554 2 45899999843 1247889999998764 3
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~ 171 (249)
.+++||+|++....... .+. ...+..+.++|+|||.+++.+....
T Consensus 88 ~~~~fD~I~~~~~l~h~----~d~-------~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 88 KDESFDFALMVTTICFV----DDP-------ERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp CTTCEEEEEEESCGGGS----SCH-------HHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred ccccccccccccccccc----ccc-------ccchhhhhhcCCCCceEEEEecCCc
Confidence 56899999998765432 121 2467889999999999999776443
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.04 E-value=5.3e-10 Score=93.15 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=77.0
Q ss_pred hHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------C-CCCce
Q 025715 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P-IEGVI 96 (249)
Q Consensus 28 KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~-~~~v~ 96 (249)
....+.+.+.+ .+..+|||+|||+|.++..++++.+ ..+++++|+.++. . ..+++
T Consensus 68 ~~~~~~~~~d~-~~~~~VLDvGcG~G~~~~~la~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~ 133 (253)
T d1tw3a2 68 AFDAPAAAYDW-TNVRHVLDVGGGKGGFAAAIARRAP-------------HVSATVLEMAGTVDTARSYLKDEGLSDRVD 133 (253)
T ss_dssp TTHHHHHHSCC-TTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECTTHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHhhcCC-ccCCEEEEeCCCCCHHHHHHHHhcc-------------eeEEEEccCHHHHHHHHHHHHHhhcccchh
Confidence 33445555553 5567999999999999999998874 5789999985531 1 24689
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++.+|+.+.. ..+||+|++..... +..... ...+|..+.+.|||||+|++...
T Consensus 134 ~~~~D~~~~~----------~~~~D~v~~~~vlh-----~~~d~~----~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 134 VVEGDFFEPL----------PRKADAIILSFVLL-----NWPDHD----AVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp EEECCTTSCC----------SSCEEEEEEESCGG-----GSCHHH----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hccccchhhc----------ccchhheeeccccc-----cCCchh----hHHHHHHHHHhcCCCcEEEEEec
Confidence 9999987632 35799999765432 122211 23568889999999999998644
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.7e-10 Score=93.47 Aligned_cols=115 Identities=8% Similarity=-0.049 Sum_probs=80.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------------------------
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------------------------- 91 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------------------------- 91 (249)
..++.+|||+|||+|..+.+++++ + ..|+|||+++.+.
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~-G--------------~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR-G--------------HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT-T--------------CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC-C--------------CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 367889999999999999999875 3 6999999997310
Q ss_pred -CCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecC
Q 025715 92 -IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (249)
Q Consensus 92 -~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~ 170 (249)
-.+++++++|+.+... ...+.||+|+.-+.+.... .+. ....+..+.++|||||++++.++..
T Consensus 108 ~~~~v~~~~~d~~~l~~-------~~~~~fd~i~~~~~l~~~~---~~~------r~~~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPR-------TNIGKFDMIWDRGALVAIN---PGD------RKCYADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp TTSSEEEEESCGGGGGG-------SCCCCEEEEEESSSTTTSC---GGG------HHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred cCCcEEEEEcchhhccc-------cccCceeEEEEEEEEEecc---chh------hHHHHHHHHhhcCCcceEEEEEccc
Confidence 1257788999877542 3457899999876543321 111 1345778899999999988876631
Q ss_pred -----------CCHHHHHHHHhcCC
Q 025715 171 -----------KDTSLLYCQLKLFF 184 (249)
Q Consensus 171 -----------~~~~~l~~~l~~~f 184 (249)
-+..++..++...|
T Consensus 172 ~~~~~~gpp~~~~~~el~~lf~~~~ 196 (229)
T d2bzga1 172 DPTKHPGPPFYVPHAEIERLFGKIC 196 (229)
T ss_dssp CTTTCCCSSCCCCHHHHHHHHTTTE
T ss_pred CCCCCCCCCCCCCHHHHHHHhcCCC
Confidence 13445666666544
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=5e-10 Score=96.45 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=69.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------C-CCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P-IEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~-~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||||||+|.++..+++. + ..+|+|+|.++.. . ..+++++++|+.+.+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~-G-------------a~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~-- 95 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKA-G-------------ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-- 95 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC--
T ss_pred CCcCEEEEEecCCcHHHHHHHHh-C-------------CCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcc--
Confidence 37899999999999999888875 3 2589999999853 1 245889999998864
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
++..+||+|+++...... .+.. .+...+....++|||||.++
T Consensus 96 ------~~~~~~D~ivs~~~~~~l--~~e~------~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 96 ------LPVEKVDIIISEWMGYCL--FYES------MLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp ------CSSSCEEEEEECCCBBTB--TBTC------CHHHHHHHHHHHEEEEEEEE
T ss_pred ------cccceeEEEeeeeeeeee--ccHH------HHHHHHHHHHhcCCCCeEEE
Confidence 345789999998643321 1111 12346777889999999987
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=3.7e-10 Score=97.70 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=69.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||||||+|.++..+++. + ..+|+|+|.+++.. ..+++++++|+.+.+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~-G-------------a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-- 100 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKH-G-------------AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-- 100 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-C-------------CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--
T ss_pred CCcCEEEEeCCCCCHHHHHHHHh-C-------------CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhcc--
Confidence 36899999999999999888765 3 35999999998531 246788999998754
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
+++.+||+|++.......... .. ...++....++|||||.++
T Consensus 101 ------~~~~~~D~i~se~~~~~~~~e-~~-------~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 101 ------LPFPKVDIIISEWMGYFLLYE-SM-------MDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ------CSSSCEEEEEECCCBTTBSTT-CC-------HHHHHHHHHHHEEEEEEEE
T ss_pred ------CcccceeEEEEEecceeeccc-hh-------HHHHHHHHHhccCCCeEEE
Confidence 356799999998653322111 11 1235566679999999986
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.99 E-value=3.7e-10 Score=91.57 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
....|||+|||+|.++..+++..+ +..++|+|+++.. .++|+.++.+|+.+..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p-------------~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~--- 94 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNP-------------DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT--- 94 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG---
T ss_pred CCCeEEEEeccCCHHHHHHHHHCC-------------CCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh---
Confidence 446899999999999999998864 6899999999731 3678999999998743
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.++..++|.|+..-+..+.-.+ + .-.++ ....+....++|||||.|.+++
T Consensus 95 ---~~~~~~~~~~i~i~fPdPw~K~~---h-~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 95 ---DYFEDGEIDRLYLNFSDPWPKKR---H-EKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp ---GTSCTTCCSEEEEESCCCCCSGG---G-GGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ---hhccCCceehhcccccccccchh---h-hhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 34677899999876543322110 0 00111 2356888899999999998865
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.99 E-value=6.6e-10 Score=95.32 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=77.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC--CCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~--~~v~~~~gDi~~~~ 106 (249)
.++.+||||+||+|+|+.+++.. + .+|++||.++.+ .+ .+++++++|+.+.
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~-G--------------A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~- 194 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA-G--------------AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF- 194 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-T--------------CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH-
T ss_pred cCCCeEEEecCCCcHHHHHHHhC-C--------------CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh-
Confidence 36789999999999999998853 3 589999999742 12 2578999998763
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC--CHHHHHHHHhc
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK--DTSLLYCQLKL 182 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~--~~~~l~~~l~~ 182 (249)
++.... .+.+||+|++|++.-..+... ........+...+..+..+|+|||.+++.+..+. ....+..++..
T Consensus 195 -l~~~~~--~~~~fD~IilDPP~f~~~~~~-~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~ 268 (309)
T d2igta1 195 -IQREER--RGSTYDIILTDPPKFGRGTHG-EVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRE 268 (309)
T ss_dssp -HHHHHH--HTCCBSEEEECCCSEEECTTC-CEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred -HHHHhh--cCCCCCEEEECCCcccccccc-hhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 122211 246899999998532222111 1111122233456778899999998766555332 33444444443
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=6.7e-10 Score=95.26 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=68.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.+|.+|||||||+|.++..+++. + ..+|+|+|.++.. ...++.++++|+.+..
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~-G-------------a~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-- 97 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKA-G-------------AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-- 97 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--
T ss_pred CCcCEEEEECCCCCHHHHHHHHc-C-------------CCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc--
Confidence 36789999999999999988875 3 2589999999842 1246888999998854
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
++..+||+|+|......... .. .....+....++|||||.++
T Consensus 98 ------~~~~~~D~Ivse~~~~~~~~--e~------~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 98 ------LPVEKVDVIISEWMGYFLLF--ES------MLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp ------CSCSCEEEEEECCCBTTBTT--TC------HHHHHHHHHHHHEEEEEEEE
T ss_pred ------CccccceEEEEeeeeeeccc--cc------ccHHHHHHHHhcCCCCcEEe
Confidence 34579999999864332111 11 12344555678999999987
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.96 E-value=4.3e-10 Score=89.57 Aligned_cols=135 Identities=15% Similarity=0.149 Sum_probs=94.2
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------CCCCceEeecC
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGD 101 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-------~~~~v~~~~gD 101 (249)
|-|+.+.+. .++|..++|.++|.||.+..+++. .++|+|+|+++.+ ..+++.+++++
T Consensus 7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~---------------~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~ 70 (182)
T d1wg8a2 7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER---------------GGRVIGLDQDPEAVARAKGLHLPGLTVVQGN 70 (182)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHTCCTTEEEEESC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc---------------cCcEEEEhhhhhHHHHHhhccccceeEeehH
Confidence 334444443 378899999999999999998874 3799999999854 23688899998
Q ss_pred CCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHHHHHh
Q 025715 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (249)
Q Consensus 102 i~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~~~l~ 181 (249)
..+.. .+...+..+.+|.|+.|...+..+.-+.+ +-.......|..+..+|++||.+++..|++.+...+...++
T Consensus 71 f~~~~---~~l~~~~~~~vdgIl~DLGvSs~qld~~~--re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~ 145 (182)
T d1wg8a2 71 FRHLK---RHLAALGVERVDGILADLGVSSFHLDDPS--DELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLR 145 (182)
T ss_dssp GGGHH---HHHHHTTCSCEEEEEEECSCCHHHHHCGG--THHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHcCCCccCEEEEEccCCHHHhhcch--HHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHh
Confidence 87743 23334455789999999865432211111 11233456888999999999999999987665555555555
Q ss_pred cCC
Q 025715 182 LFF 184 (249)
Q Consensus 182 ~~f 184 (249)
...
T Consensus 146 e~~ 148 (182)
T d1wg8a2 146 ESG 148 (182)
T ss_dssp HHC
T ss_pred hcc
Confidence 543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.95 E-value=3.3e-10 Score=93.17 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=66.4
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~ 109 (249)
+++|++|||+|||+|.++..+++.. ++|+++|+++.. ...++.++.+|...-.
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~---------------~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~--- 129 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIV---------------DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY--- 129 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS---------------SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC---
T ss_pred hcccceEEEecCCCCHHHHHHHHHh---------------cccccccccHHHHHHHHHHHhcccccccccCchhhcc---
Confidence 4799999999999999999888753 689999998732 3568889999976521
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
...++||+|++.++... ... ...+.|+|||+||+-+
T Consensus 130 -----~~~~pfD~Iiv~~a~~~-----ip~------------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 130 -----EEEKPYDRVVVWATAPT-----LLC------------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp -----GGGCCEEEEEESSBBSS-----CCH------------HHHHTEEEEEEEEEEE
T ss_pred -----hhhhhHHHHHhhcchhh-----hhH------------HHHHhcCCCCEEEEEE
Confidence 12367999999875432 121 1246899999999843
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=3.8e-09 Score=91.39 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=74.1
Q ss_pred HhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-------------------
Q 025715 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------- 90 (249)
Q Consensus 30 ~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------------- 90 (249)
.++.++.+ ++++.+|||||||+|.++..++...+ ..+++|||+++..
T Consensus 141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~-------------~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g 206 (328)
T d1nw3a_ 141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATN-------------CKHHYGVEKADIPAKYAETMDREFRKWMKWYG 206 (328)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCC-------------CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhC-------------CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444444 47899999999999999999987764 3589999999832
Q ss_pred -CCCCceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 91 -PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 91 -~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...++++++||+.+.+....+ ..+|+|+++.... .+. ...++....+.|||||++|+.
T Consensus 207 ~~~~~i~~~~gd~~~~~~~~~~------~~advi~~~~~~f-------~~~-----~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 207 KKHAEYTLERGDFLSEEWRERI------ANTSVIFVNNFAF-------GPE-----VDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp CCCCCEEEEECCTTSHHHHHHH------HHCSEEEECCTTT-------CHH-----HHHHHHHHHTTCCTTCEEEES
T ss_pred ccCCceEEEECccccccccccc------CcceEEEEcceec-------chH-----HHHHHHHHHHhCCCCcEEEEe
Confidence 124688999999987643221 1368898764211 111 134677888999999999873
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.3e-10 Score=93.09 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=74.3
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------C--CC-----------ceEeec
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I--EG-----------VIQVQG 100 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~--~~-----------v~~~~g 100 (249)
.+|.+|||+|||||.++..++.... ..|+|+|+++... + .+ +..+.+
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~--------------~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF--------------QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEG 115 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE--------------EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc--------------CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhcc
Confidence 5678999999999999876665432 4799999997320 0 00 000111
Q ss_pred CCCChhhHHH-H-----------------HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCE
Q 025715 101 DITNARTAEV-V-----------------IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK 162 (249)
Q Consensus 101 Di~~~~~~~~-i-----------------~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~ 162 (249)
+......... + ...+..++||+|++......... .. +-...+++.+.++|||||.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~---~~----~~~~~~l~~i~~~LkpGG~ 188 (257)
T d2a14a1 116 NSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC---SL----DAYRAALCNLASLLKPGGH 188 (257)
T ss_dssp CGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS---SH----HHHHHHHHHHHTTEEEEEE
T ss_pred ccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcc---cH----HHHHHHHHHHHhccCCCcE
Confidence 1111100000 0 01134578999998654322110 11 1234577889999999999
Q ss_pred EEEEEecC---------------CCHHHHHHHHhcC-CCeeEE
Q 025715 163 FIAKIFRG---------------KDTSLLYCQLKLF-FPVVTF 189 (249)
Q Consensus 163 lv~k~~~~---------------~~~~~l~~~l~~~-f~~v~~ 189 (249)
|++..+.. .+..++...++.. |..+.+
T Consensus 189 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 189 LVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp EEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred EEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 99875422 2456777777654 764444
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=5.7e-10 Score=94.71 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=65.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CC-----CceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IE-----GVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~-----~v~~~~gDi~~ 104 (249)
+++.+|||+|||+|.++..++++ + ..|+|||+++... -. .......|+..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~-g--------------~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE-G--------------FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred cCCCEEEEecCCCcHHHHHHHHc-C--------------CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence 35679999999999999999875 3 5899999997320 01 12223344433
Q ss_pred hhhHHHHHHhcCCCcccEEEeCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+ .......+||+|++-. ++........+. .....++..+.++|||||.|++.+.
T Consensus 120 ~~-----~~~~~~~~fd~v~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 120 LD-----KDVPAGDGFDAVICLGNSFAHLPDSKGDQ----SEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HH-----HHSCCTTCEEEEEECSSCGGGSCCTTSSS----HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cc-----cccCCCCCceEEEEecCchhhcCCcccCh----HHHHHHHHHHHHHcCcCcEEEEeec
Confidence 21 1112346899999854 222211111111 1134578999999999999999654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.85 E-value=2.5e-09 Score=82.41 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
.|.+|||||||+|+++..++.+. ..+|++||.++.+ .. .+++++++|+...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rg--------------a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~--- 76 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRG--------------MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA--- 76 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT--------------CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH---
T ss_pred CCCeEEEcCCccCHHHHHHHHhC--------------cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc---
Confidence 58899999999999999887763 2599999999742 12 3478889987542
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ +. ..++||+|++|++.. .......+ ..+ ...++|+|||.+++..-
T Consensus 77 --l-~~-~~~~fDiIf~DPPy~--------~~~~~~~l-~~i-~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 77 --I-DC-LTGRFDLVFLDPPYA--------KETIVATI-EAL-AAKNLLSEQVMVVCETD 122 (152)
T ss_dssp --H-HH-BCSCEEEEEECCSSH--------HHHHHHHH-HHH-HHTTCEEEEEEEEEEEE
T ss_pred --c-cc-cccccceeEechhhc--------cchHHHHH-HHH-HHCCCcCCCeEEEEEeC
Confidence 2 22 347899999997421 11111111 112 23468999999998643
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.81 E-value=1.1e-08 Score=85.21 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=76.6
Q ss_pred hhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------C-CCC
Q 025715 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P-IEG 94 (249)
Q Consensus 26 ~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~-~~~ 94 (249)
......+.+.+. +.+..+|||+|||+|.++..++++.+ +.+++++|+..+. . ..+
T Consensus 67 ~~~~~~~~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P-------------~~~~~~~Dlp~~~~~a~~~~~~~~~~~r 132 (256)
T d1qzza2 67 DLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAP-------------HLRGTLVELAGPAERARRRFADAGLADR 132 (256)
T ss_dssp TTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHhcCC-CccCCEEEEECCCCCHHHHHHHHhhc-------------CcEEEEecChHHHHHHHHHHhhcCCcce
Confidence 333444555555 35667999999999999999999874 6799999984421 1 246
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.+..+|+.++ ++ .++|+|++-.... +.+... +..+|+.+.+.|||||+|++..+
T Consensus 133 i~~~~~d~~~~---------~p-~~~D~v~~~~vLh-----~~~d~~----~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 133 VTVAEGDFFKP---------LP-VTADVVLLSFVLL-----NWSDED----ALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp EEEEECCTTSC---------CS-CCEEEEEEESCGG-----GSCHHH----HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eeeeeeecccc---------cc-ccchhhhcccccc-----ccCcHH----HHHHHHHHHhhcCCcceeEEEEe
Confidence 78888998763 22 4699998754322 223221 23568889999999999998644
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.7e-08 Score=83.98 Aligned_cols=136 Identities=12% Similarity=0.105 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
+..++||+|||+|..+..++++.+ +.+|+|+|+++.+ .+ .++..++.+..+.-.
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~-------------~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~- 126 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLN-------------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLM- 126 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-------------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSST-
T ss_pred ccceEEEeCCCchHHHHHHHHhCC-------------CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhh-
Confidence 346999999999999999999885 5899999999843 12 234445444322100
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCc--------C-HHH---------------HHHHHHHHHHHHHHhccCCCEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM--------D-EFV---------------QSQLILAGLTVVTHVLKEGGKFI 164 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~--------~-~~~---------------~~~l~~~~l~~a~~~Lk~gG~lv 164 (249)
..+ .....++||+|+||++.-....... . +.. -...+...+..+...+++.|++.
T Consensus 127 ~~~-~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t 205 (250)
T d2h00a1 127 DAL-KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS 205 (250)
T ss_dssp TTS-TTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred hhh-hhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEE
Confidence 000 0123468999999986432211000 0 000 01245677888899999999998
Q ss_pred EEEecCCCHHHHHHHHhcC-CCeeEEec
Q 025715 165 AKIFRGKDTSLLYCQLKLF-FPVVTFAK 191 (249)
Q Consensus 165 ~k~~~~~~~~~l~~~l~~~-f~~v~~~k 191 (249)
+.+.+..+..++...++.. +..+.+++
T Consensus 206 ~~ig~~~~l~~i~~~L~~~g~~~i~~ie 233 (250)
T d2h00a1 206 CMLGKKCSLAPLKEELRIQGVPKVTYTE 233 (250)
T ss_dssp EEESSTTSHHHHHHHHHHTTCSEEEEEE
T ss_pred EEecchhhHHHHHHHHHHcCCCeEEEEE
Confidence 8676777778887777653 66766653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.76 E-value=3.3e-09 Score=85.29 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.|.+|||+|||+|.++..++.+. ...|++||+++.+ ..+++.++++|+.+.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~g--------------a~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l--------- 104 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLG--------------AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI--------- 104 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT--------------BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC---------
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC--------------CCcccccccCHHHHHHHHHccccccEEEEehhhc---------
Confidence 57899999999999987766543 2589999999853 246788999998653
Q ss_pred cCCCcccEEEeCCCCC
Q 025715 115 FDGCKADLVVCDGAPD 130 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~ 130 (249)
+++||+|++|+++.
T Consensus 105 --~~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 105 --SGKYDTWIMNPPFG 118 (197)
T ss_dssp --CCCEEEEEECCCC-
T ss_pred --CCcceEEEeCcccc
Confidence 36899999998653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.75 E-value=1.9e-09 Score=88.43 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=70.0
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------CCCCceEeecCC
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDI 102 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------~~~~v~~~~gDi 102 (249)
+++|++|||+|||+|.++..+++.++... -....+|+++|+.+.. ...++.++++|.
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g-------~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~ 150 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKG-------VDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 150 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSC-------CCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhcc-------CCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc
Confidence 47899999999999999999998875210 0023589999998731 135788999998
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+-. .....||+|+++++... ..+ ...+.||+||++|+-+.
T Consensus 151 ~~~~--------~~~~~fD~Iiv~~a~~~-----~p~------------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 151 RKGY--------PPNAPYNAIHVGAAAPD-----TPT------------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp GGCC--------GGGCSEEEEEECSCBSS-----CCH------------HHHHTEEEEEEEEEEES
T ss_pred cccc--------ccccceeeEEEEeechh-----chH------------HHHHhcCCCcEEEEEEe
Confidence 6532 12468999999886532 221 13579999999998543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.75 E-value=4.1e-09 Score=85.88 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=68.3
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~ 107 (249)
+++|++|||+|||+|..+..+++..+ ++|+++|+.+.. .+.++.+++||..+-.
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g--------------~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~- 140 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVK--------------TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF- 140 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC--------------SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-
T ss_pred cCccceEEEecCCCChhHHHHHHhhC--------------ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC-
Confidence 37899999999999999999998764 689999999731 3578999999987632
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
.....||.|+..++... ... .....|++||+||+-+
T Consensus 141 -------~~~~pfD~Iiv~~a~~~-----ip~------------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 141 -------PPKAPYDVIIVTAGAPK-----IPE------------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp -------GGGCCEEEEEECSBBSS-----CCH------------HHHHTEEEEEEEEEEE
T ss_pred -------cccCcceeEEeeccccc-----CCH------------HHHHhcCCCCEEEEEE
Confidence 12468999999875432 121 1246799999999843
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=6e-08 Score=85.87 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=68.7
Q ss_pred HhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------------------
Q 025715 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------------ 91 (249)
Q Consensus 30 ~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------------------ 91 (249)
.+|.++.+ +++|++|||||||+|..+..++...+ ..+|+|||+++...
T Consensus 206 ~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g-------------~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g 271 (406)
T d1u2za_ 206 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECG-------------CALSFGCEIMDDASDLTILQYEELKKRCKLYG 271 (406)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHC-------------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhc
Confidence 34444444 48999999999999999999998875 35899999997320
Q ss_pred C-C-Cce-EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 92 I-E-GVI-QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 92 ~-~-~v~-~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
. . .+. ...+|..+.+.... .+ ..+|+|+.+... ..+. ...++..+.+.|||||.+|+
T Consensus 272 ~~~~~~~~~~~~~f~~~~~~d~---~~--~~adVV~inn~~-------f~~~-----l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 272 MRLNNVEFSLKKSFVDNNRVAE---LI--PQCDVILVNNFL-------FDED-----LNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp BCCCCEEEEESSCSTTCHHHHH---HG--GGCSEEEECCTT-------CCHH-----HHHHHHHHHTTCCTTCEEEE
T ss_pred cccccceeeeeechhhcccccc---cc--ccceEEEEeccc-------CchH-----HHHHHHHHHHhcCCCcEEEE
Confidence 0 1 111 23555555432221 22 368999886421 1111 23567788999999999986
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.69 E-value=3.9e-08 Score=79.16 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=74.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--CCCceEeecCCCChhhHHHHHHhcCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--IEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
.++.+|||.|||+|+|+..+.++.. ....++|+|+++... ......+++|..... ..
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~------------~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~---------~~ 76 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHG------------TAYRFVGVEIDPKALDLPPWAEGILADFLLWE---------PG 76 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHC------------SCSEEEEEESCTTTCCCCTTEEEEESCGGGCC---------CS
T ss_pred CCcCEEEECCCchHHHHHHHHHhcc------------ccceEEeeecCHHHHhhcccceeeeeehhccc---------cc
Confidence 5788999999999999999888775 456899999998652 234456777765432 34
Q ss_pred CcccEEEeCCCCCCCCCCC-----cCHHH--H-----------HHHHHHHHHHHHHhccCCCEEEEEEec
Q 025715 118 CKADLVVCDGAPDVTGLHD-----MDEFV--Q-----------SQLILAGLTVVTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 118 ~~~DlVlsD~~~~~~g~~~-----~~~~~--~-----------~~l~~~~l~~a~~~Lk~gG~lv~k~~~ 169 (249)
.+||+|++|++........ ..... . ..+....+..+.+.|++||.+++-+..
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 6899999998653221100 00100 0 113445678899999999999886643
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=2.8e-07 Score=77.30 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=83.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAE 109 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~~ 109 (249)
..+++|+|||+|..+..+++. + +.+|+|+|+++.+ ... .+.+..+|+.+...
T Consensus 111 ~~~vld~g~GsG~i~~~la~~-~-------------~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~-- 174 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF-S-------------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-- 174 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-S-------------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG--
T ss_pred ccEEEEeeeeeehhhhhhhhc-c-------------cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc--
Confidence 468999999999999988754 3 5899999999853 122 35566788876421
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCC-----CCCcCHHHH-------HHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTG-----LHDMDEFVQ-------SQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 177 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g-----~~~~~~~~~-------~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l~ 177 (249)
...++||+|+||++--... ....++... +..++.+ +.++|+|||.+++.+- ......
T Consensus 175 -----~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig-~~Q~~~-- 243 (271)
T d1nv8a_ 175 -----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIG-EDQVEE-- 243 (271)
T ss_dssp -----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECC-TTCHHH--
T ss_pred -----cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEEC-HHHHHH--
Confidence 1236899999998521110 000111111 2233333 4579999999998653 233333
Q ss_pred HHHhcCCCeeEEecCCCCCCCCceEEEEEe
Q 025715 178 CQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 207 (249)
Q Consensus 178 ~~l~~~f~~v~~~kP~~sr~~s~E~y~v~~ 207 (249)
+.+.|+.+.++|..+.+ +++++++
T Consensus 244 --v~~l~~~~g~~kDl~g~----~R~~~~~ 267 (271)
T d1nv8a_ 244 --LKKIVSDTVFLKDSAGK----YRFLLLN 267 (271)
T ss_dssp --HTTTSTTCEEEECTTSS----EEEEEEE
T ss_pred --HHHHHHhCCEEeccCCC----cEEEEEE
Confidence 35668888888766655 5777764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=8.2e-08 Score=77.13 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=54.9
Q ss_pred hhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCc
Q 025715 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGV 95 (249)
Q Consensus 26 ~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v 95 (249)
+-+++.+-...+-+ .|.+|||+|||+|+++..++.+ + ..+|+|+|+++... -...
T Consensus 32 a~~~~~~~~~~~dl-~g~~vLDlg~GtG~l~i~a~~~-g-------------~~~v~~vdi~~~~~~~a~~N~~~~~~~~ 96 (201)
T d1wy7a1 32 ASELLWLAYSLGDI-EGKVVADLGAGTGVLSYGALLL-G-------------AKEVICVEVDKEAVDVLIENLGEFKGKF 96 (201)
T ss_dssp HHHHHHHHHHTTSS-TTCEEEEETCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHTGGGTTSE
T ss_pred HHHHHHHHHhcCCC-CCCEEEECcCcchHHHHHHHHc-C-------------CCEEEEEcCcHHHHHHHHHHHHHcCCCc
Confidence 34444444444433 4689999999999999887754 3 36899999998421 1235
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCC
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~ 130 (249)
.++++|+... +++||+|++|+++.
T Consensus 97 ~~~~~d~~~~-----------~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 97 KVFIGDVSEF-----------NSRVDIVIMNPPFG 120 (201)
T ss_dssp EEEESCGGGC-----------CCCCSEEEECCCCS
T ss_pred eEEECchhhh-----------CCcCcEEEEcCccc
Confidence 6777887542 36899999998654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=2.4e-08 Score=78.34 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=59.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--------CCC--ceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEG--VIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--------~~~--v~~~~gDi~~~~~~~ 109 (249)
..|.+|||+|||+|+++..++.+ + .+|+++|+++.+. .-+ .++...|.... ..
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~-g--------------a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~--~~ 102 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASE-G--------------WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF--LP 102 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT-T--------------CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH--HH
T ss_pred cCCCeEEEeccccchhhhhhhhc-c--------------chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcc--cc
Confidence 57889999999999999887765 3 5899999998531 001 12222222111 01
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
. ......+||+|++|++... + ..+ +...++ ...+|+|||.+++..
T Consensus 103 ~--~~~~~~~fD~If~DPPY~~-~---~~~-----~l~~l~--~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 103 E--AKAQGERFTVAFMAPPYAM-D---LAA-----LFGELL--ASGLVEAGGLYVLQH 147 (171)
T ss_dssp H--HHHTTCCEEEEEECCCTTS-C---TTH-----HHHHHH--HHTCEEEEEEEEEEE
T ss_pred c--ccccCCccceeEEcccccc-C---HHH-----HHHHHH--HcCCcCCCeEEEEEe
Confidence 1 1224568999999985432 1 121 112222 246899999988754
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.58 E-value=2.4e-07 Score=76.56 Aligned_cols=114 Identities=22% Similarity=0.320 Sum_probs=82.1
Q ss_pred chhhhhhHHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC----CCCCCceE
Q 025715 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQ 97 (249)
Q Consensus 22 ~~ra~~KL~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~----~~~~~v~~ 97 (249)
.+.+.....++.+.+..+....+|||+|||+|.++..++++.+ ..+++.+|+.+. ....++++
T Consensus 62 ~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~vi~~~~~~~ri~~ 128 (244)
T d1fp1d2 62 VDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP-------------LIKGINFDLPQVIENAPPLSGIEH 128 (244)
T ss_dssp HHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCCTTEEE
T ss_pred HHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC-------------CCeEEEecchhhhhccCCCCCeEE
Confidence 3444455566777777667778999999999999999999875 678999998542 13468999
Q ss_pred eecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 98 ~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+.||+.++ ++ ..|+|+.--.. ++++.. -+..+|+.+.+.|+|||++++..+
T Consensus 129 ~~gd~~~~---------~p--~~D~~~l~~vL-----h~~~de----~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 129 VGGDMFAS---------VP--QGDAMILKAVC-----HNWSDE----KCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp EECCTTTC---------CC--CEEEEEEESSG-----GGSCHH----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCCcccc---------cc--cceEEEEehhh-----hhCCHH----HHHHHHHHHHHHcCCCcEEEEEEE
Confidence 99999763 23 45998764322 222322 234678899999999999988654
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.56 E-value=6.7e-08 Score=76.48 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=67.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------------CCCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------------~~~~v~~~~gDi~~~~~ 107 (249)
..|.+|||||||+|+++..++.+.. .+|+.||.++.. ...+++++++|+.+.
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa--------------~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~-- 103 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGM--------------DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA-- 103 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTC--------------SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--
T ss_pred cCCCEEEEcccccccccceeeecch--------------hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh--
Confidence 3688999999999999998887642 689999999742 123577888888652
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHH--HHHhccCCCEEEEEEec
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTV--VTHVLKEGGKFIAKIFR 169 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~--a~~~Lk~gG~lv~k~~~ 169 (249)
++.+.. ...+||+|+.|++... .... ..+.. ...+|+++|.+++....
T Consensus 104 l~~~~~--~~~~fDlIflDPPY~~-----~~~~-------~~l~~i~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 104 LEQFYE--EKLQFDLVLLDPPYAK-----QEIV-------SQLEKMLERQLLTNEAVIVCETDK 153 (182)
T ss_dssp HHHHHH--TTCCEEEEEECCCGGG-----CCHH-------HHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hhhhcc--cCCCcceEEechhhhh-----hHHH-------HHHHHHHHCCCCCCCEEEEEEcCC
Confidence 222211 3458999999985321 1111 12222 23689999999886543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=4.8e-08 Score=77.31 Aligned_cols=97 Identities=11% Similarity=-0.004 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+.+|||||||+|+++..++.+.. .+|+.||.++.+ ...+++++++|+.+.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa--------------~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~---- 104 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA--------------AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---- 104 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC--------------SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH----
T ss_pred chhhhhhhhccccceeeeEEecCc--------------ceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc----
Confidence 567999999999999998887643 689999999742 134667788876532
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+ . ....+||+|++|++... + ....... .+ ....+|+++|.+++...
T Consensus 105 -l-~-~~~~~fDlIf~DPPY~~-~----~~~~~l~----~l-~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 105 -L-A-QKGTPHNIVFVDPPFRR-G----LLEETIN----LL-EDNGWLADEALIYVESE 150 (183)
T ss_dssp -H-S-SCCCCEEEEEECCSSST-T----THHHHHH----HH-HHTTCEEEEEEEEEEEE
T ss_pred -c-c-ccccccCEEEEcCcccc-c----hHHHHHH----HH-HHCCCCCCCeEEEEEec
Confidence 1 1 13468999999975321 1 1111111 11 12468999999998654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.7e-07 Score=75.03 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~ 107 (249)
.+..+||++||++|.-+.++++.++ ++++|+++|.++.. .+ ..++++.||..+ .
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~------------~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e--~ 123 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALP------------ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE--T 123 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC------------TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH--H
T ss_pred cCCCeEEEEechhhHHHHHHHHhCC------------CCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh--c
Confidence 3568999999999999999998876 56899999999842 12 457888898755 2
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.++......++||+|+.|.... . +..-+..+.++|+|||.+++-
T Consensus 124 l~~~~~~~~~~~fD~ifiD~dk~--------~------y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDADKE--------N------CSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECSCST--------T------HHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhhhhcccCCccEEEEeCCHH--------H------HHHHHHHHHHHhcCCcEEEEe
Confidence 33333333457899999997421 1 123466778999999999974
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.43 E-value=9.9e-08 Score=77.42 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
+..+||++|||+|.-+.++++.++ ++++|+++|+++.. .+ .+++++.||..+. +
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~------------~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~--l 121 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQ------------PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL--I 121 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCC------------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--G
T ss_pred CCCEEEEEccCchhHHHHHHHhCC------------CccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc--c
Confidence 347999999999999999998775 46899999999732 12 3588899987652 2
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
..+.......+||+|+.|+.. +... ....+..+.++|+|||.+++
T Consensus 122 ~~l~~~~~~~~~D~ifiD~~~--------~~~~----~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLDHWK--------DRYL----PDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp GGHHHHSCCCCEEEEEECSCG--------GGHH----HHHHHHHHTTCEEEEEEEEE
T ss_pred cchhhcccccccceeeecccc--------cccc----cHHHHHHHhCccCCCcEEEE
Confidence 334444555789999999632 1111 11235667889999998775
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.5e-08 Score=83.33 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=61.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCC----------------
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEG---------------- 94 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~---------------- 94 (249)
..|.++||+|||||.++...+.... .+|+|+|.++.. ...+
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~--------------~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 118 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHF--------------EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 118 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGC--------------SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred CCCcEEEEeccCCCHHHHHHhcccC--------------CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcc
Confidence 3578999999999988765554332 589999999731 0000
Q ss_pred ----------------ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhcc
Q 025715 95 ----------------VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (249)
Q Consensus 95 ----------------v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (249)
...+..|++....... .....++||+|++-....... .+. +-...++..+.++||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~--~~~~~~~fD~V~~~~~l~~i~-~~~------~~~~~~l~~~~~~Lk 189 (263)
T d2g72a1 119 KGECWQDKERQLRARVKRVLPIDVHQPQPLGA--GSPAPLPADALVSAFCLEAVS-PDL------ASFQRALDHITTLLR 189 (263)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCS--SCSSCSSEEEEEEESCHHHHC-SSH------HHHHHHHHHHHTTEE
T ss_pred ccchhhhhHHHhhhhhhccccccccCCCcccc--CCcCcCccCeeeeHHHHHHHc-cCH------HHHHHHHHHHHHHcC
Confidence 0112334443221000 011235799999854322110 011 113567889999999
Q ss_pred CCCEEEEEE
Q 025715 159 EGGKFIAKI 167 (249)
Q Consensus 159 ~gG~lv~k~ 167 (249)
|||.|++..
T Consensus 190 PGG~li~~~ 198 (263)
T d2g72a1 190 PGGHLLLIG 198 (263)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEec
Confidence 999999753
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.41 E-value=2.9e-06 Score=69.65 Aligned_cols=106 Identities=25% Similarity=0.254 Sum_probs=73.9
Q ss_pred HHhhhhhcCcccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCC
Q 025715 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITN 104 (249)
Q Consensus 29 L~ei~~~~~~~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~ 104 (249)
...+.+.+.+..+..+|||+|||+|.++..++++.+ +.+++.+|+.+.. ..++++++.+|+.+
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~ 135 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP-------------TIKGINFDLPHVIEDAPSYPGVEHVGGDMFV 135 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCT-------------TSEEEEEECTTTTTTCCCCTTEEEEECCTTT
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC-------------CCeEEEcccHHhhhhcccCCceEEecccccc
Confidence 345555666656667999999999999999999875 6799999997643 23678999999976
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+. + ..|+++.- .+... ++.. .+..+|+.+.+.|+|||++++..
T Consensus 136 ~~---------P--~ad~~~l~---~vlh~--~~d~----~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 136 SI---------P--KADAVFMK---WICHD--WSDE----HCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp CC---------C--CCSCEECS---SSSTT--SCHH----HHHHHHHHHHHHCCSSSCEEEEE
T ss_pred cC---------C--CcceEEEE---EEeec--CCHH----HHHHHHHHHHHhcCCCceEEEEE
Confidence 42 3 23444432 12222 2222 13457888999999999988753
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.40 E-value=1e-07 Score=81.73 Aligned_cols=127 Identities=11% Similarity=-0.043 Sum_probs=79.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----------CCCceEeecCCCChhhHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----------~~~v~~~~gDi~~~~~~~ 109 (249)
+++.+|||.|||+|+|...+.+++.... .....++|+|+++... ..+....++|....
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~--------~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~---- 183 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKG--------DVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN---- 183 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTS--------SCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC----
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhcc--------CccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc----
Confidence 4678999999999999999888764211 1235799999998421 12345666776542
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHH---------HHHHHHHHHHHHHHHhccCCCEEEEEEe----cCCCHHHH
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEF---------VQSQLILAGLTVVTHVLKEGGKFIAKIF----RGKDTSLL 176 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~---------~~~~l~~~~l~~a~~~Lk~gG~lv~k~~----~~~~~~~l 176 (249)
....+||+|++|+++..... .+.. ....+....+..+.+.|+|||.+++-+- .+.....+
T Consensus 184 -----~~~~~fD~vi~NPPy~~~~~--~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~l 256 (328)
T d2f8la1 184 -----LLVDPVDVVISDLPVGYYPD--DENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKV 256 (328)
T ss_dssp -----CCCCCEEEEEEECCCSEESC--HHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHH
T ss_pred -----cccccccccccCCCCCCCcc--chhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHH
Confidence 23468999999987532111 0000 0001223467888999999999987554 34445556
Q ss_pred HHHHhcCCC
Q 025715 177 YCQLKLFFP 185 (249)
Q Consensus 177 ~~~l~~~f~ 185 (249)
...+...+.
T Consensus 257 R~~L~~~~~ 265 (328)
T d2f8la1 257 DKFIKKNGH 265 (328)
T ss_dssp HHHHHHHEE
T ss_pred HHHHHhCCc
Confidence 554444443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.20 E-value=2.6e-06 Score=72.60 Aligned_cols=160 Identities=15% Similarity=0.098 Sum_probs=99.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------------CCCCceEeecCCCC
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDITN 104 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------------~~~~v~~~~gDi~~ 104 (249)
...+||.+|.|.|+.+..+++.. +..+|+.||+++.. .-++++.+.+|...
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~-------------~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~ 143 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP-------------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA 143 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-------------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH
T ss_pred CcceEEEeCCCchHHHHHHHhcC-------------CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHH
Confidence 45799999999999888877653 34799999999831 12567888888764
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEec----CCCH-HHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFR----GKDT-SLLYC 178 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~----~~~~-~~l~~ 178 (249)
. +. . .+.+||+|++|........ ... ..| ....++.+.+.|+|||.|++.+-. .... ..+..
T Consensus 144 ~-----l~-~-~~~~yDvIi~D~~dp~~~~-~~~----~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~ 211 (312)
T d1uira_ 144 Y-----LE-R-TEERYDVVIIDLTDPVGED-NPA----RLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHR 211 (312)
T ss_dssp H-----HH-H-CCCCEEEEEEECCCCBSTT-CGG----GGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHH
T ss_pred H-----hh-h-cCCcccEEEEeCCCccccc-chh----hhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHH
Confidence 2 22 2 3468999999975322111 000 011 134677889999999999986532 2233 34556
Q ss_pred HHhcCCCeeEEecCCC-CCCCCceEEEEEeeccCCCCCCchhhhHhHHh
Q 025715 179 QLKLFFPVVTFAKPKS-SRNSSIEAFAVCENYFPPEGFNPKDLHRLLEK 226 (249)
Q Consensus 179 ~l~~~f~~v~~~kP~~-sr~~s~E~y~v~~g~~~~~~~~~~~~~~~~~~ 226 (249)
.++..|..|..+...- |=. +.-.+++|..-..+...++..++..+++
T Consensus 212 tl~~~F~~V~~y~~~vPs~~-~~w~f~~aS~~~~p~~~~~~~~~~~~~~ 259 (312)
T d1uira_ 212 TVREAFRYVRSYKNHIPGFF-LNFGFLLASDAFDPAAFSEGVIEARIRE 259 (312)
T ss_dssp HHHTTCSEEEEEEEEEGGGT-EEEEEEEEESSSCTTCCCTTHHHHHHHH
T ss_pred HHHHhCceEEEEEeeeCCcC-CCCEeEEEeCCCCccccChhhhhhhHhh
Confidence 6788899988753211 111 1124677776555555555555544443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.12 E-value=3.6e-06 Score=68.58 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CC-CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~-~~v~~~~gDi~~~~~~ 108 (249)
+..+||++|++.|.-+.++++.++ ++++|+.+|.++.. .+ ..++++.||..+ .+
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~------------~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~--~L 124 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIP------------EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP--VL 124 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSC------------TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH--HH
T ss_pred CCCcEEEecchhhhhHHHHHhhCC------------CCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH--HH
Confidence 457999999999999999999886 56899999999842 12 357788888754 33
Q ss_pred HHHHHh-cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 109 EVVIRH-FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 109 ~~i~~~-~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
..+... ...++||+|+.|+... . +..-+..+.++|+|||.+++-
T Consensus 125 ~~l~~~~~~~~~fD~iFiDa~k~--------~------y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 125 DEMIKDEKNHGSYDFIFVDADKD--------N------YLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHCGGGTTCBSEEEECSCST--------T------HHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHhccccCCceeEEEeccchh--------h------hHHHHHHHHhhcCCCcEEEEc
Confidence 333221 1246899999997321 1 123566778999999999974
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.11 E-value=9.6e-07 Score=69.56 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC--CceEeecCCCChhh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE--GVIQVQGDITNART 107 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~--~v~~~~gDi~~~~~ 107 (249)
.+.+||||+||+|+++..++.|.. ..|+.||.+... ... .......|+.+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA--------------~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~--- 105 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQA--------------KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD--- 105 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC--------------SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH---
T ss_pred ccceEeecccCccceeeeeeeecc--------------eeeEEeecccchhhhHhhHHhhhcccccccccccccccc---
Confidence 568999999999999999998743 699999999732 111 23344444322
Q ss_pred HHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+.......+||+|+.|++... +.. ..++ ..+ .-..+|+++|.+++...
T Consensus 106 --~l~~~~~~~~fDlIFlDPPY~~------~~~--~~~l-~~l-~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 106 --FLKQPQNQPHFDVVFLDPPFHF------NLA--EQAI-SLL-CENNWLKPNALIYVETE 154 (183)
T ss_dssp --HTTSCCSSCCEEEEEECCCSSS------CHH--HHHH-HHH-HHTTCEEEEEEEEEEEE
T ss_pred --cccccccCCcccEEEechhHhh------hhH--HHHH-HHH-HHhCCcCCCcEEEEEec
Confidence 1111122357999999986432 111 1111 111 12468999999998654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.08 E-value=1.5e-05 Score=66.56 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=91.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~ 104 (249)
....+||-+|.|.|+.+..+.+..+ ..+|+.||+++.. .-++++.+.+|...
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~-------------~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~ 140 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPS-------------VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM 140 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT-------------CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH
T ss_pred CCcceEEecCCCCcHHHHHHHhcCC-------------cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHH
Confidence 3457999999999999988876532 4699999999831 12578888888754
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCC----CHHHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQL 180 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~----~~~~l~~~l 180 (249)
. +.+ .+.+||+|+.|.........+.- ....++.+.+.|+|||.+++..-.+. ....+...+
T Consensus 141 ~-----l~~--~~~~yDvIi~D~~~p~~~~~~L~-------t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl 206 (274)
T d1iy9a_ 141 H-----IAK--SENQYDVIMVDSTEPVGPAVNLF-------TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDV 206 (274)
T ss_dssp H-----HHT--CCSCEEEEEESCSSCCSCCCCCS-------TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred H-----Hhh--cCCCCCEEEEcCCCCCCcchhhc-------cHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhh
Confidence 2 222 34689999999753222111111 12467788999999999998654322 134566777
Q ss_pred hcCCCeeEEec-CCCCCCCCceEEEEEee
Q 025715 181 KLFFPVVTFAK-PKSSRNSSIEAFAVCEN 208 (249)
Q Consensus 181 ~~~f~~v~~~k-P~~sr~~s~E~y~v~~g 208 (249)
+..|..|..+. ...+-+...=.+++|..
T Consensus 207 ~~~F~~v~~y~~~vPsy~~g~w~f~~aS~ 235 (274)
T d1iy9a_ 207 KEIFPITKLYTANIPTYPSGLWTFTIGSK 235 (274)
T ss_dssp HTTCSEEEEEEECCTTSGGGCEEEEEEES
T ss_pred hhhcCceEEEEEEeeecCCCceEEEEEcC
Confidence 88899887652 11122222235566653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.08 E-value=6.7e-06 Score=68.83 Aligned_cols=137 Identities=18% Similarity=0.130 Sum_probs=87.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------------CCCCceEe
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------PIEGVIQV 98 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------------~~~~v~~~ 98 (249)
.+..+||-+|.|.|+.+..+.+. + ..+|+.||+++.. ..++++++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~-------------~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~ 136 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-D-------------VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT 136 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-------------CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE
T ss_pred CCCceEEEecCCchHHHHHHHHh-C-------------CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEE
Confidence 45689999999999988877653 2 3589999998731 12567888
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCC----H
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKD----T 173 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~ 173 (249)
.+|.... +.+ .++||+|+.|..... +. ...| ....++.+.+.|+|||.+++-...+.. .
T Consensus 137 ~~Da~~~-----l~~---~~~yDvIi~D~~~~~-~~-------~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~ 200 (276)
T d1mjfa_ 137 IGDGFEF-----IKN---NRGFDVIIADSTDPV-GP-------AKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDEL 200 (276)
T ss_dssp ESCHHHH-----HHH---CCCEEEEEEECCCCC-------------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHH
T ss_pred EChHHHH-----Hhc---cCCCCEEEEeCCCCC-CC-------cccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHH
Confidence 8887532 222 368999999974321 11 0112 135678889999999999986643322 3
Q ss_pred HHHHHHHhcCCCeeEEec-CCCCCCCCceEEEEEe
Q 025715 174 SLLYCQLKLFFPVVTFAK-PKSSRNSSIEAFAVCE 207 (249)
Q Consensus 174 ~~l~~~l~~~f~~v~~~k-P~~sr~~s~E~y~v~~ 207 (249)
..+...++..|..|..+. |..+-+ +.-.+++|.
T Consensus 201 ~~~~~tl~~~F~~v~~y~~~vP~y~-~~w~f~~as 234 (276)
T d1mjfa_ 201 ISAYKEMKKVFDRVYYYSFPVIGYA-SPWAFLVGV 234 (276)
T ss_dssp HHHHHHHHHHCSEEEEEEECCTTSS-SSEEEEEEE
T ss_pred HHHHHHHHhhCCeeEEEEecCcCCC-CceEEEEEe
Confidence 345566677799888753 222222 223556654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.90 E-value=6.2e-06 Score=67.85 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=55.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++.+||++|||+|+.|..++++. .+|+|||+++.. ..++++++++|+.+.+
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~---------------~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~---- 88 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKIS---------------KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ---- 88 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS---------------SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT----
T ss_pred CCCCeEEEECCCccHHHHHHHhhc---------------CceeEeeecccchhhhhhhhhhccchhhhhhhhhccc----
Confidence 578999999999999999999863 599999999842 1257899999998864
Q ss_pred HHHhcCCCcccEEEeCCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~~ 131 (249)
+.....+.|++|.+.+.
T Consensus 89 ----~~~~~~~~vv~NLPY~I 105 (245)
T d1yuba_ 89 ----FPNKQRYKIVGNIPYHL 105 (245)
T ss_dssp ----CCCSSEEEEEEECCSSS
T ss_pred ----cccceeeeEeeeeehhh
Confidence 34567788999986543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.88 E-value=2.4e-05 Score=65.95 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~~ 105 (249)
...+||=+|.|.|+.+..+.+.. +..+|++||+++.. .-++++.+.+|....
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~-------------~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~ 155 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHD-------------SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY 155 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-------------TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH
T ss_pred CCceEEEecCCchHHHHHHHhcC-------------CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH
Confidence 45799999999999888877653 24689999999831 125778888886542
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCC-C---HHHHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGK-D---TSLLYCQL 180 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~-~---~~~l~~~l 180 (249)
+ +. .+++||+|++|..-...+. ...| ....+..+.+.|+|||.+++....+. + ...+...+
T Consensus 156 -----l-~~-~~~~yDvIi~D~~dp~~~~-------~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl 221 (295)
T d1inla_ 156 -----V-RK-FKNEFDVIIIDSTDPTAGQ-------GGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRI 221 (295)
T ss_dssp -----G-GG-CSSCEEEEEEEC-----------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHH
T ss_pred -----H-hc-CCCCCCEEEEcCCCCCcCc-------hhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHH
Confidence 2 12 3468999999974321111 0111 13568889999999999998654432 2 33455667
Q ss_pred hcCCCeeEEec
Q 025715 181 KLFFPVVTFAK 191 (249)
Q Consensus 181 ~~~f~~v~~~k 191 (249)
+..|..+..+.
T Consensus 222 ~~vF~~v~~y~ 232 (295)
T d1inla_ 222 SKVFPITRVYL 232 (295)
T ss_dssp HHHCSEEEEEE
T ss_pred HhhcceeEEEE
Confidence 77899888754
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.84 E-value=0.0001 Score=59.77 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=67.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+| .+||++|++.|+=+..+++.+... +..++|+++|+.+.. ..+++++++||.++.+.. +
T Consensus 80 KP-k~ILEIGv~~GgS~~~~a~~l~~~---------~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~----~ 145 (232)
T d2bm8a1 80 RP-RTIVELGVYNGGSLAWFRDLTKIM---------GIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTF----E 145 (232)
T ss_dssp CC-SEEEEECCTTSHHHHHHHHHHHHT---------TCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGG----G
T ss_pred CC-CEEEEECCCCchHHHHHHHHHHhc---------CCCceEEecCcChhhhhhhhccccceeeeecccccHHHH----H
Confidence 45 699999999998666555543100 146899999998633 246899999999887653 2
Q ss_pred hcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+....+|+|+-|+.- ..++ . ...+.. ..+|++||.+++.
T Consensus 146 ~l~~~~~dlIfID~~H------~~~~-v-----~~~~~~-~~lLk~GG~iIve 185 (232)
T d2bm8a1 146 HLREMAHPLIFIDNAH------ANTF-N-----IMKWAV-DHLLEEGDYFIIE 185 (232)
T ss_dssp GGSSSCSSEEEEESSC------SSHH-H-----HHHHHH-HHTCCTTCEEEEC
T ss_pred HHHhcCCCEEEEcCCc------chHH-H-----HHHHHH-hcccCcCCEEEEE
Confidence 3455678999998741 1111 1 112223 4799999999984
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.82 E-value=2.4e-05 Score=66.37 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~~ 105 (249)
...+||-+|.|.|+.+..+.+.- +..+|+.||+++.. .-++++.+.+|...
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~-------------~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~- 171 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHE-------------SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE- 171 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-------------TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH-
T ss_pred CCCeEEEeCCCchHHHHHHHHcC-------------CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH-
Confidence 45799999999999998887643 24689999998731 12567777787653
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCC----HHHHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQL 180 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~~~l~~~l 180 (249)
.+.. ..++||+|+.|..... +. ...| ....++.+.+.|+|||.++...-.... ...+...+
T Consensus 172 ----~l~~--~~~~yDvII~D~~dp~-~~-------~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l 237 (312)
T d2b2ca1 172 ----FLKN--HKNEFDVIITDSSDPV-GP-------AESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFN 237 (312)
T ss_dssp ----HHHH--CTTCEEEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred ----HHHh--CCCCCCEEEEcCCCCC-Cc-------chhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHh
Confidence 2322 3578999999975321 11 1122 245678889999999999986543322 23455666
Q ss_pred hcCCCeeEEecCC-CCCCCCceEEEEEee
Q 025715 181 KLFFPVVTFAKPK-SSRNSSIEAFAVCEN 208 (249)
Q Consensus 181 ~~~f~~v~~~kP~-~sr~~s~E~y~v~~g 208 (249)
+..|..|..+... .+-+...=.|++|..
T Consensus 238 ~~vF~~v~~y~~~vPtyp~G~w~f~~aSk 266 (312)
T d2b2ca1 238 RKIFPAVTYAQSIVSTYPSGSMGYLICAK 266 (312)
T ss_dssp HHHCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred hhccceEEEeeeccCCcCCccceeeEEEC
Confidence 7779988775321 222221224677643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.81 E-value=4.1e-05 Score=62.71 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=67.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC----CCCCCceEeecCCCChhhHHHHHHhc
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~----~~~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
....+|||+|+|+|.++..++++.+ ..+++..|+.+. ...++++++.||+.++.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~--------- 136 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFP-------------KLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSI--------- 136 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCBTTEEEEECCTTTCC---------
T ss_pred cCceEEEEecCCccHHHHHHHHhCC-------------CCeEEEecCHHHHHhCcccCceEEEecCcccCC---------
Confidence 4457899999999999999999875 578999998542 12468999999997642
Q ss_pred CCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC---CEEEEE
Q 025715 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG---GKFIAK 166 (249)
Q Consensus 116 ~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g---G~lv~k 166 (249)
..+|+++.--.. ++++... +..+|+.+.+.|+|| |++++.
T Consensus 137 --p~aD~~~l~~vL-----Hdw~d~~----~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 137 --PNADAVLLKYIL-----HNWTDKD----CLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp --CCCSEEEEESCG-----GGSCHHH----HHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred --CCCcEEEEEeec-----ccCChHH----HHHHHHHHHHHcCcccCCcEEEEE
Confidence 257999864322 2233222 346788889999998 666654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.78 E-value=2.1e-05 Score=64.18 Aligned_cols=68 Identities=10% Similarity=0.197 Sum_probs=52.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
+++++||++|||+|..|..+++.. .+|+|||+++.. ..++++++++|+.+.+
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~---------------~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~---- 80 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRC---------------NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK---- 80 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---------------SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC----
T ss_pred CCCCeEEEECCCchHHHHHHHhCc---------------CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc----
Confidence 688999999999999999999863 589999998731 3468999999998754
Q ss_pred HHHhcCCCcccEEEeCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~ 130 (249)
+.......|++|.+.+
T Consensus 81 ----~~~~~~~~vv~NLPYn 96 (235)
T d1qama_ 81 ----FPKNQSYKIFGNIPYN 96 (235)
T ss_dssp ----CCSSCCCEEEEECCGG
T ss_pred ----ccccccceeeeeehhh
Confidence 2333445688887543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.74 E-value=1.6e-05 Score=70.28 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=70.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------C--CCCceEeecCCCChh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P--IEGVIQVQGDITNAR 106 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~--~~~v~~~~gDi~~~~ 106 (249)
.++.+|+|-|||+|+|...+.+++....+............++|+|+++.. . ........+|.....
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~ 240 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 240 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh
Confidence 457899999999999999998877521110000000001358999998732 1 123345566665432
Q ss_pred hHHHHHHhcCCCcccEEEeCCCCCCCCCCCcC----HH--HHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD----EF--VQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 107 ~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~----~~--~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
...+||+|++|+++........+ .. .........+..+...|++||.+++-+.
T Consensus 241 ---------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 241 ---------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp ---------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 34689999999976432211000 00 0001122467778899999999988554
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=6.3e-05 Score=62.99 Aligned_cols=141 Identities=15% Similarity=0.152 Sum_probs=89.5
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~ 104 (249)
....+||-+|.|-|+.+..+.+.-+ ..+|+.||+++.. .-++++.+.+|...
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~-------------~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~ 143 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPS-------------VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE 143 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCC-------------cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH
Confidence 3457999999999999988876532 4699999999731 12578888888653
Q ss_pred hhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHHHHHhccCCCEEEEEEecCCC----HHHHHHH
Q 025715 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQ 179 (249)
Q Consensus 105 ~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~Lk~gG~lv~k~~~~~~----~~~l~~~ 179 (249)
. +. . ..++||+|++|...+. +. ...| ....+..+.+.|+|||.+++....... ...+...
T Consensus 144 ~-----l~-~-~~~~yDvIi~D~~~p~-~~-------~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~t 208 (285)
T d2o07a1 144 F-----MK-Q-NQDAFDVIITDSSDPM-GP-------AESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQF 208 (285)
T ss_dssp H-----HH-T-CSSCEEEEEEECC-------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHH
T ss_pred H-----Hh-c-CCCCCCEEEEcCCCCC-Cc-------ccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHH
Confidence 2 22 2 3468999999974321 11 1122 235678889999999999987654332 2345566
Q ss_pred HhcCCCeeEEecC-CCCCCCCceEEEEEee
Q 025715 180 LKLFFPVVTFAKP-KSSRNSSIEAFAVCEN 208 (249)
Q Consensus 180 l~~~f~~v~~~kP-~~sr~~s~E~y~v~~g 208 (249)
++..|..|..+.. ..+-+.+.-.|++|..
T Consensus 209 l~~~F~~v~~y~~~vP~~~~g~w~f~~aSk 238 (285)
T d2o07a1 209 CQSLFPVVAYAYCTIPTYPSGQIGFMLCSK 238 (285)
T ss_dssp HHHHCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred HHhcCCeeeEEeeeeeecCCCCeEEEEEEC
Confidence 7777998876532 1222222225677764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.69 E-value=4.7e-05 Score=63.95 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------------CCCCceEeecCCCCh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------------~~~~v~~~~gDi~~~ 105 (249)
...+||=+|-|-|+....+.+..+ ..+|+.||+++.. .-++++.+.+|....
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~-------------~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~ 146 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHAS-------------IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF 146 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH
T ss_pred CCcceEEecCCchHHHHHHHhccc-------------ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH
Confidence 457999999999999888876532 4689999999731 125677888886432
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHHHHHhccCCCEEEEEEecCC-C---HHHHHHHH
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIFRGK-D---TSLLYCQL 180 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~-~~~l~~a~~~Lk~gG~lv~k~~~~~-~---~~~l~~~l 180 (249)
+ ....+++||+|+.|..-.. +. . ..|. ...++.+.+.|+|||.+++..-... + ...+...+
T Consensus 147 -----l-~~~~~~~yDvIi~D~~dp~-~~---~----~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l 212 (290)
T d1xj5a_ 147 -----L-KNAAEGSYDAVIVDSSDPI-GP---A----KELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNC 212 (290)
T ss_dssp -----H-HTSCTTCEEEEEECCCCTT-SG---G----GGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred -----H-hhccccCccEEEEcCCCCC-Cc---c----hhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhh
Confidence 2 2233468999999975321 11 0 1121 3467888999999999998765432 2 23455666
Q ss_pred hcCCCeeEE
Q 025715 181 KLFFPVVTF 189 (249)
Q Consensus 181 ~~~f~~v~~ 189 (249)
+..|..+..
T Consensus 213 ~~vF~~~~~ 221 (290)
T d1xj5a_ 213 REIFKGSVN 221 (290)
T ss_dssp HHHCSSCEE
T ss_pred hhhccccee
Confidence 777876543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=1.5e-05 Score=68.49 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=52.8
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~ 108 (249)
.++.+||||.||.|.|+..+++.. .+|+|+|+++.+ .+.++.++.+|+.+.-..
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~---------------~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQA---------------ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTS---------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred CCCceEEEecccccccchhccccc---------------cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 467899999999999999998753 699999999742 357889999988653210
Q ss_pred HHHHHhcCCCcccEEEeCCC
Q 025715 109 EVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~ 128 (249)
.......+|+|+.|++
T Consensus 276 ----~~~~~~~~d~vilDPP 291 (358)
T d1uwva2 276 ----QPWAKNGFDKVLLDPA 291 (358)
T ss_dssp ----SGGGTTCCSEEEECCC
T ss_pred ----hhhhhccCceEEeCCC
Confidence 0112357999999974
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=5.4e-05 Score=60.49 Aligned_cols=88 Identities=19% Similarity=0.165 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
++.+++|+|+|.|-=+..++-.. ++.+++.+|.+.-+ .+.+++++++++.+..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~-------------p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--- 128 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVR-------------PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-------------TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---
T ss_pred cCCceeeeeccCCceeeehhhhc-------------ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc---
Confidence 45799999999998887777654 46899999998632 3578988988887642
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
...+||+|+|-+.-+ ....+..+..++++||.+++
T Consensus 129 ------~~~~fD~V~sRA~~~---------------~~~ll~~~~~~l~~~g~~~~ 163 (207)
T d1jsxa_ 129 ------SEPPFDGVISRAFAS---------------LNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp ------CCSCEEEEECSCSSS---------------HHHHHHHHTTSEEEEEEEEE
T ss_pred ------cccccceehhhhhcC---------------HHHHHHHHHHhcCCCcEEEE
Confidence 345899999965311 12467888999999999886
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=9.5e-05 Score=66.91 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=68.6
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCC-----CCCCCeEEEecCCCCC--------CCC--------CceEe
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSR-----EGDLPLIVAIDLQPMA--------PIE--------GVIQV 98 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~-----~~~~~~vvavDi~~~~--------~~~--------~v~~~ 98 (249)
.++.+|+|-|||+|+|...+.+++........... ......++|+|+++.. .+. +-...
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~ 242 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 242 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence 45789999999999999988887653211000000 0011358999998731 011 11233
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCH---HHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE---FVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~---~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.+|....+ .....+||+|++|+++......+... ..........+..+.+.|++||++++-+-
T Consensus 243 ~~~~l~~d-------~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 243 LGNTLGSD-------GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp ESCTTSHH-------HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhhc-------ccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 44444422 12346899999999764321111000 00000112467788999999999988654
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.27 E-value=0.00016 Score=56.74 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=27.9
Q ss_pred CCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 117 ~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+.||+|+|--.... .+. +....++....+.|+|||.|++
T Consensus 130 ~~~fDvI~CRNVLiY-----f~~----~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 130 PGPFDAIFCRNVMIY-----FDK----TTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp CCCEEEEEECSSGGG-----SCH----HHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCccEEEeehhHHh-----cCH----HHHHHHHHHHHHHhCCCcEEEE
Confidence 367999999654322 122 2234678888999999999886
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.0011 Score=50.89 Aligned_cols=100 Identities=22% Similarity=0.288 Sum_probs=59.7
Q ss_pred hcCcccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCc-eEeecCCCCh---
Q 025715 35 EFNIFEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGV-IQVQGDITNA--- 105 (249)
Q Consensus 35 ~~~~~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v-~~~~gDi~~~--- 105 (249)
+..-+++|.+||=+|||| |.....+++.++ ..+|+++|.++.+. + -|. ..+ |..+.
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~ 86 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLG-------------AENVIVIAGSPNRLKLAEEIGADLTL--NRRETSVE 86 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-------------BSEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHH
T ss_pred HHhCCCCCCEEEEECCCccchhheecccccc-------------cccccccccccccccccccccceEEE--eccccchH
Confidence 333457899999999875 444445666654 23899999987531 0 122 122 22222
Q ss_pred hhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 106 ~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+..+.+.+...+..+|+|+-- .|.. ..+..+.++|++||++++-
T Consensus 87 ~~~~~i~~~~~~~g~Dvvid~-----vG~~------------~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 87 ERRKAIMDITHGRGADFILEA-----TGDS------------RALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHHHHHHTTTSCEEEEEEC-----SSCT------------THHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHhhCCCCceEEeec-----CCch------------hHHHHHHHHhcCCCEEEEE
Confidence 222334444445679999842 2221 1466788999999999864
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.98 E-value=0.0019 Score=52.28 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~ 109 (249)
.+.+++|+|+|.|-=...++-.++ +.+++.+|-+.-+ .+.++.++++.+.+....
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p-------------~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~- 135 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFP-------------HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR- 135 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-
T ss_pred CCCeEEeecCCCchHHHHHHHhCC-------------CccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc-
Confidence 567999999999988877776553 6799999988632 357887777765432100
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.. ..++||+|+|-+.-. ....+..+..++++||.+++
T Consensus 136 ---~~-~~~~~D~v~sRAva~---------------l~~ll~~~~~~l~~~g~~i~ 172 (239)
T d1xdza_ 136 ---KD-VRESYDIVTARAVAR---------------LSVLSELCLPLVKKNGLFVA 172 (239)
T ss_dssp ---TT-TTTCEEEEEEECCSC---------------HHHHHHHHGGGEEEEEEEEE
T ss_pred ---cc-ccccceEEEEhhhhC---------------HHHHHHHHhhhcccCCEEEE
Confidence 00 125899999975321 12468889999999999886
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.88 E-value=0.00061 Score=52.40 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=61.7
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=+|||| |..+..+++.++ ..+|+++|.++.+. --|. .++ |..+.+..+.+.
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~G-------------a~~Vi~~d~~~~r~~~a~~lGa~~~i--~~~~~~~~~~v~ 89 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRG-------------AGRIIGVGSRPICVEAAKFYGATDIL--NYKNGHIEDQVM 89 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT-------------CSCEEEECCCHHHHHHHHHHTCSEEE--CGGGSCHHHHHH
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhccc-------------ccccccccchhhhHHHHHhhCccccc--cccchhHHHHHH
Confidence 47899999999987 555555666554 24799999987531 0122 222 333333345555
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+-- .|.. ..+..+.++++|+|++++.
T Consensus 90 ~~t~g~G~D~vid~-----~g~~------------~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 90 KLTNGKGVDRVIMA-----GGGS------------ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp HHTTTSCEEEEEEC-----SSCT------------THHHHHHHHEEEEEEEEEC
T ss_pred HHhhccCcceEEEc-----cCCH------------HHHHHHHHHHhcCCEEEEE
Confidence 55555679999853 2221 2466788999999999984
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.84 E-value=0.0023 Score=48.97 Aligned_cols=97 Identities=13% Similarity=0.048 Sum_probs=60.3
Q ss_pred ccCCCeEEEEcCCC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||=+|||| |-++..+++.++ ...|+++|.++.+. --|. ..+...-.+ +....+.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~G-------------a~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~-~~~~~~~ 91 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAG-------------ASRIIAIDINGEKFPKAKALGATDCLNPRELD-KPVQDVI 91 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCSEEECGGGCS-SCHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhC-------------CceeeeeccchHHHHHHHHhCCCcccCCccch-hhhhhhH
Confidence 47899999999998 445555666665 35899999998542 0122 222211111 1222333
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCC-CEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~g-G~lv~k 166 (249)
+...++.+|+|+- +.|. ...+..+.+.+++| |++++-
T Consensus 92 ~~~~~~G~d~vie-----~~G~------------~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 92 TELTAGGVDYSLD-----CAGT------------AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHHTSCBSEEEE-----SSCC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hhhhcCCCcEEEE-----eccc------------chHHHHHHHHhhcCCeEEEec
Confidence 3334568999984 3442 14678899999997 999874
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00071 Score=55.33 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=52.2
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHH
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~ 110 (249)
.++..||++|+|+|+.|..++++. .+|+|+|+++.. ..++++++.+|+.+.+..+
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~---------------~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~- 83 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERL---------------DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGE- 83 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTC---------------SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHH-
T ss_pred CCCCEEEEECCCchHHHHHHHccC---------------CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccc-
Confidence 578999999999999999999753 589999999731 1357899999998754322
Q ss_pred HHHhcCCCcccEEEeCCCCC
Q 025715 111 VIRHFDGCKADLVVCDGAPD 130 (249)
Q Consensus 111 i~~~~~~~~~DlVlsD~~~~ 130 (249)
+.+.. +.--.|++|.+.+
T Consensus 84 ~~~~~--~~~~~vvgNlPY~ 101 (252)
T d1qyra_ 84 LAEKM--GQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHH--TSCEEEEEECCTT
T ss_pred ccccc--CCCeEEEecchHH
Confidence 22221 1234778887544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.79 E-value=0.0015 Score=51.09 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=64.1
Q ss_pred ccCCCeEEEEcCCCChHH-HHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWS-QVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s-~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~ 113 (249)
+++|++||-+||||.|.. ..+++..+ ..+|+++|.++.+. --+...+. |-.+.+..+.+.+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~g-------------a~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~ 88 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLG-------------AAVVIVGDLNPARLAHAKAQGFEIAD-LSLDTPLHEQIAA 88 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCEEEE-TTSSSCHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhc-------------ccceeeecccchhhHhhhhccccEEE-eCCCcCHHHHHHH
Confidence 479999999999996644 44555554 46899999987431 12332221 2223333344555
Q ss_pred hcCCCcccEEEeCCCCCCCCCCC--cCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 114 HFDGCKADLVVCDGAPDVTGLHD--MDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 114 ~~~~~~~DlVlsD~~~~~~g~~~--~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
...+..+|+++-.......+... .+.. -....++.+.++++|||++++-
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~----~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHE----APATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSB----CTTHHHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCcEEEEECccccccCCcccceeec----CcHHHHHHHHHHHhcCCEEEEe
Confidence 45667899998543221111100 0000 0013678899999999999874
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.72 E-value=0.0013 Score=56.78 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----------CC---------------C
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE---------------G 94 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----------~~---------------~ 94 (249)
++.+|||+.||+|.++..++...+ ...|+++|+++.+. .. .
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-------------~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~ 111 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-------------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT 111 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-------------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-------------CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccce
Confidence 467999999999999997776554 35899999998431 00 1
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+...+.|... .+. -....||+|-.|+. |- . ...+..|.+.++.||.|.++.
T Consensus 112 ~~~~~~Da~~-----~~~--~~~~~fDvIDiDPf----Gs---~--------~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 112 IVINHDDANR-----LMA--ERHRYFHFIDLDPF----GS---P--------MEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp EEEEESCHHH-----HHH--HSTTCEEEEEECCS----SC---C--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred eEeehhhhhh-----hhH--hhcCcCCcccCCCC----CC---c--------HHHHHHHHHHhccCCEEEEEe
Confidence 2223333321 111 13467999999972 11 1 135778899999999998864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.68 E-value=0.0048 Score=46.44 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=56.9
Q ss_pred ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCc-eEeecCCC--Chh-hHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGV-IQVQGDIT--NAR-TAE 109 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v-~~~~gDi~--~~~-~~~ 109 (249)
+++|.+||=+|+||-|.... +++..+ .+|+++|.++.+. + -+. ..+..|-. +.. ..+
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--------------a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~ 89 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYG--------------AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIE 89 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhc--------------ccccccchHHHHHHHHHHcCCcEEEeccccccccchhhh
Confidence 47899999999886555544 444443 6999999987531 0 111 11222221 211 122
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.+. .+..+|+|+-- .|. ...+..+.++|+++|++++-
T Consensus 90 ~~~~~-~g~g~D~vid~-----~g~------------~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 90 RIRSA-IGDLPNVTIDC-----SGN------------EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp HHHHH-SSSCCSEEEEC-----SCC------------HHHHHHHHHHSCTTCEEEEC
T ss_pred hhhcc-cccCCceeeec-----CCC------------hHHHHHHHHHHhcCCceEEE
Confidence 33332 34679999842 222 13567888999999999974
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0018 Score=53.54 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=51.0
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------C---CCCceEeecCCCChhh
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNART 107 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~---~~~v~~~~gDi~~~~~ 107 (249)
.++.+||++|+|+|+.|..++++. .+|+||++++.. . ..+++.+.+|+...+
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~---------------~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~- 83 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKA---------------KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD- 83 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHS---------------SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-
T ss_pred CCCCEEEEECCCchHHHHHHHhcC---------------CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh-
Confidence 578899999999999999999863 599999998731 1 246888999998743
Q ss_pred HHHHHHhcCCCcccEEEeCCCC
Q 025715 108 AEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 108 ~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
....+.|++|.+.
T Consensus 84 ---------~~~~~~vV~NLPY 96 (278)
T d1zq9a1 84 ---------LPFFDTCVANLPY 96 (278)
T ss_dssp ---------CCCCSEEEEECCG
T ss_pred ---------hhhhhhhhcchHH
Confidence 2346789998754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0089 Score=45.03 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred ccCCCeEEEEcCCCChHHHHH-HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCce-EeecCCCChhhH-HHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL-SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDITNARTA-EVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l-~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~-~~~gDi~~~~~~-~~i 111 (249)
+++|.+||=+|+||.|..... ++.++ ..+|+++|.++.+. --|.. .+..+-.+.... +.+
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G-------------~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~ 90 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMG-------------AAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKV 90 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcC-------------CceEEeccCCHHHHHHHHHhCCcccccccccccccccccc
Confidence 478999999999988877654 44443 24899999987431 01221 222222232222 222
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
.... +..+|+|+- +.|. ...+..+.+++++||++++--.
T Consensus 91 ~~~~-g~g~Dvvid-----~~G~------------~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 91 EGQL-GCKPEVTIE-----CTGA------------EASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHH-TSCCSEEEE-----CSCC------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred cccC-CCCceEEEe-----ccCC------------chhHHHHHHHhcCCCEEEEEec
Confidence 2222 367999885 2332 1357788999999999998544
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.50 E-value=0.0027 Score=51.36 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=42.4
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCCCCcC-HHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD-EFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~-~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
++.||..+ +.+.++++++|+|+.|++.+. +..+.+ ...-.......+..+.++|||+|.+++-..
T Consensus 7 ~~~~D~le------~l~~l~d~SIDliitDPPYn~-~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 7 YDVCDCLD------TLAKLPDDSVQLIICDPPYNI-MLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEECCHHH------HHHTSCTTCEEEEEECCCSBC-CGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEechHHH------HHhhCcCCCccEEEECCCCCC-CcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 56677654 334678899999999986543 111111 001123345678899999999999998543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.013 Score=44.20 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=59.7
Q ss_pred ccCCCeEEEEcCCCChHHH---HHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQ---VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~---~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i 111 (249)
+++|++||=.|+ .|+... .+++.++ .+|++++.++.+. --+...+ .|..+.+..+.+
T Consensus 26 ~~~g~~VlV~Ga-~G~vG~~aiq~a~~~G--------------~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~i 89 (174)
T d1yb5a2 26 VKAGESVLVHGA-SGGVGLAACQIARAYG--------------LKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKI 89 (174)
T ss_dssp CCTTCEEEEETC-SSHHHHHHHHHHHHTT--------------CEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHH
T ss_pred CCCCCEEEEEec-cccccccccccccccC--------------cccccccccccccccccccCcccc-cccccccHHHHh
Confidence 579999999996 244444 3455554 7899988776321 0132211 255555555666
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+...+..+|+|+... | . ..+..+.++|+|+|++++
T Consensus 90 ~~~t~~~g~d~v~d~~-----g----~---------~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEML-----A----N---------VNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp HHHHCTTCEEEEEESC-----H----H---------HHHHHHHHHEEEEEEEEE
T ss_pred hhhhccCCceEEeecc-----c----H---------HHHHHHHhccCCCCEEEE
Confidence 6666777899999632 1 0 235667899999999997
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.39 E-value=0.011 Score=46.96 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=43.0
Q ss_pred EeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCC-C--CCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG-L--HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 97 ~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g-~--~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.++||..+ +.+.++++++|+|+.|++.+... . ...+...-.......+.++.++|+|||.+++-
T Consensus 7 i~~gDcle------~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 7 IHQMNCFD------FLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp EEECCHHH------HHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeccHHH------HHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 57788754 33457889999999998654321 1 11122233445567889999999999998763
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.13 E-value=0.029 Score=42.08 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-----CCCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-----~~~v~~~~gDi~~~~~~~~i~ 112 (249)
++||.+||-.|+|+.+.... +++.++ ...|+++|.++.+. +-...++.. .+. ..+...
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-------------~~~vv~~~~~~~k~~~~~~~ga~~~i~~--~~~-~~~~~~ 93 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-------------PATVIALDVKEEKLKLAERLGADHVVDA--RRD-PVKQVM 93 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC-------------CCEEEEEESSHHHHHHHHHTTCSEEEET--TSC-HHHHHH
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhc-------------CcccccccchhHHHHHHhhcccceeecC--ccc-HHHHHH
Confidence 57999999999988777754 444554 35889999987431 111223322 221 223334
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...+..+|+|+-. .|. ...+..+.++|++||++++-
T Consensus 94 ~~~~~~g~d~vid~-----~g~------------~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 94 ELTRGRGVNVAMDF-----VGS------------QATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp HHTTTCCEEEEEES-----SCC------------HHHHHHGGGGEEEEEEEEEC
T ss_pred HhhCCCCceEEEEe-----cCc------------chHHHHHHHHHhCCCEEEEE
Confidence 44455679999853 221 13577889999999999974
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.98 E-value=0.014 Score=47.60 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=45.6
Q ss_pred eEeecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCCC---CCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL---HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 96 ~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g~---~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
+.++||..+ +.+.++++++|+|+.|++....-. .+..+..-.+.+...+..+.++|+++|++++-+
T Consensus 14 ~l~~GD~le------~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 14 SMYIGDSLE------LLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp EEEESCHHH------HGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEehhHHH------HHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 567888653 234578899999999986543211 112233334556678999999999999999754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.85 E-value=0.03 Score=42.15 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=59.7
Q ss_pred ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|.+||=+|||+-+.... +++.++ ...|+.+|.++.+. . -|. .++ |..+.+..+++.
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g-------------~~~v~~~~~~~~k~~~a~~~Ga~~~i--~~~~~~~~~~i~ 90 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCG-------------ASIIIAVDIVESRLELAKQLGATHVI--NSKTQDPVAAIK 90 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-------------CSEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHH
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccc-------------cceeeeeccHHHHHHHHHHcCCeEEE--eCCCcCHHHHHH
Confidence 47899999999987665554 444554 34778889887431 0 122 333 333444445555
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+. .++.+|+|+-. .|. ...+..+.++++|+|++++-
T Consensus 91 ~~-t~gg~D~vid~-----~G~------------~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 91 EI-TDGGVNFALES-----TGS------------PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp HH-TTSCEEEEEEC-----SCC------------HHHHHHHHHTEEEEEEEEEC
T ss_pred HH-cCCCCcEEEEc-----CCc------------HHHHHHHHhcccCceEEEEE
Confidence 43 44689999842 332 13567889999999999873
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.032 Score=46.66 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------CCCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.+.+|||+|.|+|.+|..+.++.. ..+|+++|+++.. .-.+++.+++|+...+....+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~-------------~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~~~~~~l 108 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYC-------------PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNL 108 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-------------CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-------------CCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhcchhhhh
Confidence 457899999999999999998753 2589999998731 124688899999887654333
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.28 E-value=0.13 Score=38.63 Aligned_cols=97 Identities=9% Similarity=-0.060 Sum_probs=57.1
Q ss_pred ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||=+|||+.+.... +++.++ ..+|+++|.++.+. --+. .++...-.+. ......
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G-------------~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~-~~~~~~ 90 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAG-------------ASRIIGVGTHKDKFPKAIELGATECLNPKDYDK-PIYEVI 90 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEECSCGGGHHHHHHTTCSEEECGGGCSS-CHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-------------CceeeccCChHHHHHHHHHcCCcEEEcCCCchh-HHHHHH
Confidence 58999999999998887765 444444 36899999988542 1122 2221111111 112233
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccC-CCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKE-GGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~-gG~lv~k 166 (249)
....++.+|.|+-.. |. ...+..+...+++ +|++++-
T Consensus 91 ~~~~~~G~d~vid~~-----g~------------~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 91 CEKTNGGVDYAVECA-----GR------------IETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp HHHTTSCBSEEEECS-----CC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhcCCCCcEEEEcC-----CC------------chHHHHHHHHHHHhcCceEEE
Confidence 334556899998542 21 1245556666665 5898873
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.01 Score=49.26 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=45.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCe-EEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhc
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHF 115 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~ 115 (249)
.+|+||+||.||++..+... + -..+ |.|+|+.+.+. .++...+.+|+.+... ..+
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G------------~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~-~~~---- 64 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-C------------IPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL-EEF---- 64 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-T------------CSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCH-HHH----
T ss_pred CEEEEcCcCccHHHHHHHHc-C------------CCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCH-hHc----
Confidence 68999999999999877543 3 1223 66999987431 3566678889886542 122
Q ss_pred CCCcccEEEeCCCC
Q 025715 116 DGCKADLVVCDGAP 129 (249)
Q Consensus 116 ~~~~~DlVlsD~~~ 129 (249)
+...+|+++.-+++
T Consensus 65 ~~~~~Dll~ggpPC 78 (343)
T d1g55a_ 65 DRLSFDMILMSPPC 78 (343)
T ss_dssp HHHCCSEEEECCC-
T ss_pred CCCCccEEEeeccc
Confidence 22369999976543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.073 Score=39.78 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=60.9
Q ss_pred ccCCCeEEEEcCCC--ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCce-EeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVI-QVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gp--G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~-~~~gDi~~~~~~~~i 111 (249)
+++|++||=.|++. |.+...+++..+ .+|++++.++.+. . -|.. .+ |..+.+..+++
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~G--------------a~Vi~~~~s~~k~~~~~~lGa~~vi--~~~~~d~~~~v 89 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALG--------------AKLIGTVGTAQKAQSALKAGAWQVI--NYREEDLVERL 89 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHT--------------CEEEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHH
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhC--------------CeEeecccchHHHHHHHhcCCeEEE--ECCCCCHHHHH
Confidence 57899999887664 445555676665 7999999997431 1 1222 22 44555555666
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+.-.+..+|+|+--... ..+..+..+++++|++++-
T Consensus 90 ~~~t~g~g~d~v~d~~g~------------------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 90 KEITGGKKVRVVYDSVGR------------------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHHTTTCCEEEEEECSCG------------------GGHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCCeEEEEeCccH------------------HHHHHHHHHHhcCCeeeec
Confidence 655556789988753311 1245678899999998763
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.15 E-value=0.0066 Score=49.24 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=49.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC--------------C------CCCceEeecCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------P------IEGVIQVQGDI 102 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~--------------~------~~~v~~~~gDi 102 (249)
.+|||+.||-|..+..++.. + ++|++++.+|.. . ..+++++++|.
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~-G--------------~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV-G--------------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH-T--------------CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred CEEEECCCcccHHHHHHHhC-C--------------CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 48999999999999999875 3 699999999831 0 12567888885
Q ss_pred CChhhHHHHHHhcCCCcccEEEeCCCCCC
Q 025715 103 TNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (249)
Q Consensus 103 ~~~~~~~~i~~~~~~~~~DlVlsD~~~~~ 131 (249)
.+. ...+ ..+||+|..|+.+..
T Consensus 155 ~~~------L~~~-~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 155 LTA------LTDI-TPRPQVVYLDPMFPH 176 (250)
T ss_dssp HHH------STTC-SSCCSEEEECCCCCC
T ss_pred HHH------Hhcc-CCCCCEEEECCCCcc
Confidence 432 1122 357999999997753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.00 E-value=0.04 Score=41.16 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=51.9
Q ss_pred ccCCCeEEEEcCCCChHH-HHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWS-QVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s-~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||-+|+|+-|.. ..+++.++ ++|+++|.++.+. . -|. .++.. ..+.+. .
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G--------------~~vi~~~~~~~k~~~a~~lGa~~~i~~-~~~~~~----~ 85 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMG--------------AETYVISRSSRKREDAMKMGADHYIAT-LEEGDW----G 85 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEEESSSTTHHHHHHHTCSEEEEG-GGTSCH----H
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhcc--------------ccccccccchhHHHHhhccCCcEEeec-cchHHH----H
Confidence 479999999998744333 33455554 7999999998652 0 122 12211 011111 1
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.. .+.+|+|+.-.. .... . .+..+.++|+|+|++++-
T Consensus 86 ~~~-~~~~d~vi~~~~-~~~~---~-----------~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 86 EKY-FDTFDLIVVCAS-SLTD---I-----------DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp HHS-CSCEEEEEECCS-CSTT---C-----------CTTTGGGGEEEEEEEEEC
T ss_pred Hhh-hcccceEEEEec-CCcc---c-----------hHHHHHHHhhccceEEEe
Confidence 122 357998874211 1000 0 123468899999999873
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=93.99 E-value=0.093 Score=42.56 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=57.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHhcC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~~~ 116 (249)
++||||.||.||++..+.+. + --.+.++|+++.+. .+. ..+.+||++... +.+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G-------------~~~~~a~e~d~~a~~~~~~N~~~-~~~~~Di~~~~~-----~~~- 59 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-G-------------FRIICANEYDKSIWKTYESNHSA-KLIKGDISKISS-----DEF- 59 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-T-------------CEEEEEEECCHHHHHHHHHHCCS-EEEESCTTTSCG-----GGS-
T ss_pred CeEEEeCcCcCHHHHHHHHC-C-------------CEEEEEEeCCHHHHHHHHHHCCC-CCccCChhhCCH-----hHc-
Confidence 57999999999999877543 3 12456999998431 233 457899988643 122
Q ss_pred CCcccEEEeCCCCC---CCCCCC--cCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 117 GCKADLVVCDGAPD---VTGLHD--MDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 117 ~~~~DlVlsD~~~~---~~g~~~--~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
..+|+++.-.+++ ..|.+. .++ + ..|....++ +.+.++|. .+++
T Consensus 60 -~~~dll~~g~PCq~fS~ag~~~g~~d~-r-~~l~~~~~~-~i~~~~Pk-~~~l 108 (324)
T d1dcta_ 60 -PKCDGIIGGPPCQSWSEGGSLRGIDDP-R-GKLFYEYIR-ILKQKKPI-FFLA 108 (324)
T ss_dssp -CCCSEEEECCCCTTTSSSSCCCCSSSH-H-HHHHHHHHH-HHHHHCCS-EEEE
T ss_pred -ccccEEeeccccccccccccccccccc-c-cchHHHHHH-HHHhhCCc-eeec
Confidence 3699999865432 223221 222 1 234444444 45677886 3443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.99 E-value=0.051 Score=40.24 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=55.3
Q ss_pred ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||=+|+||=|.... +++.++ .+|+++|.++.+. --|. .++ |..+.+..+.+.
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G--------------~~Vi~~~~~~~~~~~a~~~Ga~~~i--~~~~~~~~~~~~ 88 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMG--------------LHVAAIDIDDAKLELARKLGASLTV--NARQEDPVEAIQ 88 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHHHH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcC--------------CccceecchhhHHHhhhccCccccc--cccchhHHHHHH
Confidence 47899999999877555543 344443 7999999987431 0122 223 333333334444
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.. .+..|.|.+.+.. ..+..+.++|+|||++++-
T Consensus 89 ~~~-~g~~~~i~~~~~~------------------~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 89 RDI-GGAHGVLVTAVSN------------------SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp HHH-SSEEEEEECCSCH------------------HHHHHHHTTEEEEEEEEEC
T ss_pred Hhh-cCCcccccccccc------------------hHHHHHHHHhcCCcEEEEE
Confidence 332 2445555543311 2466788999999999873
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.61 E-value=0.15 Score=37.79 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=55.8
Q ss_pred ccCCCeEEEEcCCCChHHHHH-HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL-SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l-~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||=+|+|+++.+... +...+ ...|+++|.++.+. --|. .++..+-.+ +....+.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g-------------~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~-~~~~~~~ 91 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAG-------------AKRIIAVDLNPDKFEKAKVFGATDFVNPNDHS-EPISQVL 91 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCCEEECGGGCS-SCHHHHH
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHh-------------hchheeecchHHHHHHHHHcCCcEEEcCCCcc-hhHHHHH
Confidence 479999999999997776654 33433 46899999998642 0122 223211111 1122333
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+...++.+|+|+-. .|. ...+..+..++++||..++
T Consensus 92 ~~~~~~G~d~vid~-----~G~------------~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 92 SKMTNGGVDFSLEC-----VGN------------VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHHHTSCBSEEEEC-----SCC------------HHHHHHHHHTBCTTTCEEE
T ss_pred HhhccCCcceeeee-----cCC------------HHHHHHHHHHhhCCCccee
Confidence 33345679999853 232 1345667778777765554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.27 E-value=0.21 Score=37.12 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=55.7
Q ss_pred ccCCCeEEEEcCCCChHHHHH-HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEee-cCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL-SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQ-GDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l-~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~-gDi~~~~~~~~i 111 (249)
+++|++||=.|+|+++.+... ++..+ ..+|+++|.++.+. --+. ..+. .+- .+.....
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g-------------~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~--~~~~~~~ 90 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAG-------------AARIIGVDINKDKFAKAKEVGATECVNPQDY--KKPIQEV 90 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCSEEECGGGC--SSCHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcC-------------CceEEeecCcHHHHHHHHHhCCeeEEecCCc--hhHHHHH
Confidence 589999999999877766543 33433 46999999998642 1122 1221 121 1222333
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCC-EEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG-KFIA 165 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG-~lv~ 165 (249)
.....++.+|+|+-.. |. ......+...+++|| .+++
T Consensus 91 ~~~~~~~G~D~vid~~-----G~------------~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 91 LTEMSNGGVDFSFEVI-----GR------------LDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp HHHHTTSCBSEEEECS-----CC------------HHHHHHHHHHBCTTTCEEEE
T ss_pred HHHHhcCCCCEEEecC-----Cc------------hhHHHHHHHHHhcCCcceEE
Confidence 3344557899998642 21 124566778888875 4444
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=93.09 E-value=0.03 Score=46.10 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC------CCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~------~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.+.+||||.||.||++..+.+ .+ --.|.|+|+.+.+. .+.. .++|+++... ..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~-aG-------------~~~v~a~e~d~~a~~~~~~N~~~~--~~~Di~~~~~-----~~ 68 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALES-CG-------------AECVYSNEWDKYAQEVYEMNFGEK--PEGDITQVNE-----KT 68 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHH-TT-------------CEEEEEECCCHHHHHHHHHHHSCC--CBSCGGGSCG-----GG
T ss_pred CCCeEEEECccccHHHHHHHH-CC-------------CeEEEEEeCCHHHHHHHHHHCCCC--CcCchhcCch-----hh
Confidence 579999999999999988754 33 12466899988541 2332 4688877542 11
Q ss_pred cCCCcccEEEeCCCC
Q 025715 115 FDGCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~ 129 (249)
+ ..+|+++.-.++
T Consensus 69 ~--~~~Dll~ggpPC 81 (327)
T d2c7pa1 69 I--PDHDILCAGFPC 81 (327)
T ss_dssp S--CCCSEEEEECCC
T ss_pred c--ceeeeeeccccc
Confidence 2 369999986643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.97 E-value=0.14 Score=38.51 Aligned_cols=96 Identities=15% Similarity=0.005 Sum_probs=57.2
Q ss_pred cCcccCCCeEEEEcCCCCh--HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCce-EeecCCCChhhH
Q 025715 36 FNIFEGVKRVVDLCAAPGS--WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDITNARTA 108 (249)
Q Consensus 36 ~~~~~~g~~vLDLG~gpG~--~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~-~~~gDi~~~~~~ 108 (249)
..-+++|++||=.|++.|. ....+++..+ .+|++++.++.+. -.+.. .+ |-.+....
T Consensus 24 ~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G--------------a~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~ 87 (182)
T d1v3va2 24 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--------------CKVVGAAGSDEKIAYLKQIGFDAAF--NYKTVNSL 87 (182)
T ss_dssp TTCCCSSCEEEESSTTSHHHHHHHHHHHHTT--------------CEEEEEESSHHHHHHHHHTTCSEEE--ETTSCSCH
T ss_pred HhCCCCCCEEEEEeCCCchhHHHHHHHHccC--------------CEEEEeCCCHHHHHHHHhhhhhhhc--ccccccHH
Confidence 3335899999977765533 3334565554 7999998876421 11221 12 22222223
Q ss_pred HHHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 109 ~~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
+.+.+......+|+|+-- .|. ..+..+..+|++||++++
T Consensus 88 ~~~~~~~~~~Gvd~v~D~-----vG~-------------~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 88 EEALKKASPDGYDCYFDN-----VGG-------------EFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp HHHHHHHCTTCEEEEEES-----SCH-------------HHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHhhcCCCceeEEe-----cCc-------------hhhhhhhhhccCCCeEEe
Confidence 334444566789999842 221 235678899999999997
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.87 E-value=0.14 Score=37.65 Aligned_cols=96 Identities=15% Similarity=0.015 Sum_probs=56.8
Q ss_pred ccCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHh
Q 025715 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
+++|++||=.|+||-|......-+.. ..+|+++|.++.+. --+...+ .|..+.+....+.+.
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~-------------g~~v~~~~~~~~r~~~~k~~Ga~~~-~~~~~~~~~~~~~~~ 90 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAM-------------GLNVVAVDIGDEKLELAKELGADLV-VNPLKEDAAKFMKEK 90 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT-------------TCEEEEECSCHHHHHHHHHTTCSEE-ECTTTSCHHHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcC-------------CCeEeccCCCHHHhhhhhhcCccee-cccccchhhhhcccc
Confidence 47899999999999887765433332 36899999887431 1233222 233333333334333
Q ss_pred cCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEE
Q 025715 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~ 167 (249)
. .+.+|.|...+. ...+..+.++|+|||++++.-
T Consensus 91 ~-~~~~~~v~~~~~------------------~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 91 V-GGVHAAVVTAVS------------------KPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp H-SSEEEEEESSCC------------------HHHHHHHHHHEEEEEEEEECC
T ss_pred c-CCCceEEeecCC------------------HHHHHHHHHHhccCCceEecc
Confidence 3 344555543221 125778899999999999743
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.70 E-value=0.23 Score=36.94 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=58.0
Q ss_pred ccCCCeEEEEcCCCChHHHH---HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i 111 (249)
+++|++||=.|+ .|+.... +++..+ .++++++.++.+. -.+...+ -|..+.+..+++
T Consensus 23 ~~~g~~VlI~ga-~g~vG~~~iqla~~~g--------------~~vi~~~~~~~~~~~l~~~Ga~~v-i~~~~~~~~~~v 86 (183)
T d1pqwa_ 23 LSPGERVLIHSA-TGGVGMAAVSIAKMIG--------------ARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEI 86 (183)
T ss_dssp CCTTCEEEETTT-TSHHHHHHHHHHHHHT--------------CEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHH
T ss_pred CCCCCEEEEECC-CCCcccccchhhcccc--------------ccceeeeccccccccccccccccc-ccCCccCHHHHH
Confidence 578999998773 4444444 455554 6888877665320 1233221 244455555666
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+...+..||+|+.-. |. ..+..+.++|+++|+++.
T Consensus 87 ~~~t~~~g~d~v~d~~-----g~-------------~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 87 LELTDGYGVDVVLNSL-----AG-------------EAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp HHHTTTCCEEEEEECC-----CT-------------HHHHHHHHTEEEEEEEEE
T ss_pred HHHhCCCCEEEEEecc-----cc-------------hHHHHHHHHhcCCCEEEE
Confidence 6666667899999632 21 135567899999999987
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.63 E-value=0.065 Score=39.81 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=59.2
Q ss_pred ccCCCeEEEEcC-CCChHH-HHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCc-eEeecCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCA-APGSWS-QVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGV-IQVQGDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~-gpG~~s-~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v-~~~~gDi~~~~~~~~i 111 (249)
+++|++||=.|+ |+.+.. ..+++..+ ...|+++|.++.+. . -|. ..+ |..+.+..+++
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g-------------~~~V~~~~~~~~~~~~~~~~Ga~~~i--~~~~~~~~~~~ 89 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-------------GATIIGVDVREEAVEAAKRAGADYVI--NASMQDPLAEI 89 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHT-------------CCEEEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeecccccc-------------cccccccccchhhHHHHHHcCCceee--ccCCcCHHHHH
Confidence 478999999996 554443 33455554 35899999887431 0 122 223 23333344555
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
.+...++.+|+|+-- .|. ...+..+.++++|||++++.
T Consensus 90 ~~~~~~~~~d~vid~-----~g~------------~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 90 RRITESKGVDAVIDL-----NNS------------EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp HHHTTTSCEEEEEES-----CCC------------HHHHTTGGGGEEEEEEEEEC
T ss_pred HHHhhcccchhhhcc-----ccc------------chHHHhhhhhcccCCEEEEe
Confidence 555556779988853 221 12466788999999999874
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.53 E-value=0.19 Score=37.70 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=54.7
Q ss_pred ccCCCeEEEEcCCCChHHHHH-HHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCc-eEee-cCCCChhhHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQVL-SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGV-IQVQ-GDITNARTAEVV 111 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~l-~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v-~~~~-gDi~~~~~~~~i 111 (249)
+++|.+||=.|+|+.+..... ++..+ ..+|+++|.++.+. + -|. .++. -|-.+ ..+.+
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-------------~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~--~~~~~ 91 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-------------ASRIIGIDLNKDKFEKAMAVGATECISPKDSTK--PISEV 91 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHHTCSEEECGGGCSS--CHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-------------CceEEEecCcHHHHHHHHhcCCcEEECccccch--HHHHH
Confidence 478999999999988877654 33433 36899999998652 1 121 1221 11111 12223
Q ss_pred HHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhc-cCCCEEEEE
Q 025715 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL-KEGGKFIAK 166 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L-k~gG~lv~k 166 (249)
.+...+..+|+|+-.. |. . ..+..+...+ +++|++++-
T Consensus 92 ~~~~~g~G~d~vi~~~-----g~----~--------~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 92 LSEMTGNNVGYTFEVI-----GH----L--------ETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp HHHHHTSCCCEEEECS-----CC----H--------HHHHHHHTTSCTTTCEEEEC
T ss_pred HHHhccccceEEEEeC-----Cc----h--------HHHHHHHHHhhcCCeEEEEE
Confidence 3333456799888542 21 1 2344455555 455999874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.36 E-value=0.26 Score=36.30 Aligned_cols=97 Identities=8% Similarity=-0.033 Sum_probs=56.7
Q ss_pred ccCCCeEEEEcCCCChHHHH-HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||=.|||+.+.... +++.++ ...|+++|.++.+. + -|. ..+..+-.+ +......
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G-------------~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~-~~~~~~~ 91 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAG-------------ASRIIGVDINKDKFARAKEFGATECINPQDFS-KPIQEVL 91 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEECSCGGGHHHHHHHTCSEEECGGGCS-SCHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHh-------------cCceEEEcccHHHHHHHHHhCCcEEEeCCchh-hHHHHHH
Confidence 57999999999876554443 455554 36899999987542 1 121 122111111 1122233
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+...++.+|+|+-. .|. ...++.+..++++||.+++-
T Consensus 92 ~~~~~~g~D~vid~-----~G~------------~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 92 IEMTDGGVDYSFEC-----IGN------------VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHHTTSCBSEEEEC-----SCC------------HHHHHHHHHTBCTTTCEEEE
T ss_pred HHHcCCCCcEeeec-----CCC------------HHHHHHHHHhhcCCceeEEE
Confidence 33345689999853 221 13566788899999888763
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.63 E-value=0.41 Score=35.16 Aligned_cols=90 Identities=17% Similarity=0.044 Sum_probs=51.9
Q ss_pred ccCCCeEEEEcCCCCh-HHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC-C---CCc-eEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-I---EGV-IQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~gpG~-~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~-~---~~v-~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||=+|+|+=| +...+++.++ .+++++|.++.+. . -+. .++ |..+.... .
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~G--------------a~~i~~~~~~~~~~~a~~lGad~~i--~~~~~~~~---~ 88 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMG--------------AHVVAFTTSEAKREAAKALGADEVV--NSRNADEM---A 88 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSGGGHHHHHHHTCSEEE--ETTCHHHH---H
T ss_pred CCCCCEEEEeccchHHHHHHHHhhccc--------------ccchhhccchhHHHHHhccCCcEEE--ECchhhHH---H
Confidence 4799999999876522 2333454443 6788888877531 1 122 122 33332211 1
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k 166 (249)
-..+.+|.|+-.- |.. ..+..+.++|+++|++++-
T Consensus 89 --~~~~~~D~vid~~-----g~~------------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 89 --AHLKSFDFILNTV-----AAP------------HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp --TTTTCEEEEEECC-----SSC------------CCHHHHHTTEEEEEEEEEC
T ss_pred --HhcCCCceeeeee-----ecc------------hhHHHHHHHHhcCCEEEEe
Confidence 1235799988532 211 1245678999999999974
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=89.23 E-value=1.9 Score=33.67 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHH----
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI---- 112 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~---- 112 (249)
.|+++|=-| |++++...+++.+.. ...+|+..|+++... -.+..+++.|+++.+..+.+.
T Consensus 4 ~GK~alITG-as~GIG~aia~~la~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 71 (248)
T d2d1ya1 4 AGKGVLVTG-GARGIGRAIAQAFAR-----------EGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAA 71 (248)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 467777777 556777777776642 357999999886431 124567899999987655443
Q ss_pred HhcCCCcccEEEeCCCC
Q 025715 113 RHFDGCKADLVVCDGAP 129 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~ 129 (249)
+.+ ++.|+++.+...
T Consensus 72 ~~~--G~iDiLVnnAG~ 86 (248)
T d2d1ya1 72 YAL--GRVDVLVNNAAI 86 (248)
T ss_dssp HHH--SCCCEEEECCCC
T ss_pred Hhc--CCCCeEEEeCcC
Confidence 333 479999998643
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.69 E-value=4 Score=31.19 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhh----HHHHHHhcCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNART----AEVVIRHFDG 117 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~----~~~i~~~~~~ 117 (249)
|++||=.|++ |+....+++.+.. .+.+|+.+|+.+............|..+.+. ...+.+.+..
T Consensus 2 gK~vlITGas-~GIG~a~a~~l~~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (236)
T d1dhra_ 2 ARRVLVYGGR-GALGSRCVQAFRA-----------RNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGD 69 (236)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHT-----------TTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCC-CHHHHHHHHHHHH-----------CCCEEEEEeCCccccccccceeecccCcHHHHHHHHHHHHHHhCC
Confidence 6778888864 6777777776652 3468999998875432222233344433322 2223344555
Q ss_pred CcccEEEeCCCC-CCCCC-CCc--CHHH-HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 118 CKADLVVCDGAP-DVTGL-HDM--DEFV-QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 118 ~~~DlVlsD~~~-~~~g~-~~~--~~~~-~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+++|+++.+... ..... ... +.+. ..+. .......+...++++|+++..
T Consensus 70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~i 127 (236)
T d1dhra_ 70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLA 127 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEE
Confidence 679999988642 11111 111 1111 1111 133455666788999998864
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.40 E-value=0.14 Score=38.13 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=50.4
Q ss_pred ccCCCeEEEEcC-CC-ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC--C--CCceEeecCCCChhhHHHHH
Q 025715 39 FEGVKRVVDLCA-AP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (249)
Q Consensus 39 ~~~g~~vLDLG~-gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~--~--~~v~~~~gDi~~~~~~~~i~ 112 (249)
+++|++||=.|+ |+ |.....+++.++ .+|++++.++.+. . -|...+ -|..+ ....+.
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G--------------~~vi~~~~~~~~~~~~~~lGa~~~-i~~~~--~~~~~~ 87 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMG--------------LRVLAAASRPEKLALPLALGAEEA-ATYAE--VPERAK 87 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--------------CEEEEEESSGGGSHHHHHTTCSEE-EEGGG--HHHHHH
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccc--------------ccccccccccccccccccccccee-eehhh--hhhhhh
Confidence 579999998884 43 233333555554 7899998876431 1 122111 12222 112222
Q ss_pred HhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEE
Q 025715 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 113 ~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~ 165 (249)
....+|+|+- +.|. .+..+.++|+|+|++++
T Consensus 88 ---~~~g~D~v~d-----~~G~--------------~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 88 ---AWGGLDLVLE-----VRGK--------------EVEESLGLLAHGGRLVY 118 (171)
T ss_dssp ---HTTSEEEEEE-----CSCT--------------THHHHHTTEEEEEEEEE
T ss_pred ---cccccccccc-----ccch--------------hHHHHHHHHhcCCcEEE
Confidence 2357999884 2331 13456889999999986
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.77 E-value=1.4 Score=34.75 Aligned_cols=114 Identities=11% Similarity=-0.050 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CCCCceEeecCCCChhhHHHH
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~~~v~~~~gDi~~~~~~~~i 111 (249)
|++|.=+=-|.+|+...+++.+... ....|+..+.++.+ .-.++.++..|+++.+..+.+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~----------~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~ 71 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRL----------FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRAL 71 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHH----------SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHh----------CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHH
Confidence 6677555556677877776654310 13688988887632 123678889999998776554
Q ss_pred HHhcC--CCcccEEEeCCCCCCCCC-CCcCH--H-HHHHH----HHHHHHHHHHhccCCCEEEE
Q 025715 112 IRHFD--GCKADLVVCDGAPDVTGL-HDMDE--F-VQSQL----ILAGLTVVTHVLKEGGKFIA 165 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~~~~~g~-~~~~~--~-~~~~l----~~~~l~~a~~~Lk~gG~lv~ 165 (249)
.+.+. .+++|+++.|......+. ..... + ...+. .....+.+...|+++|+++.
T Consensus 72 ~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn 135 (275)
T d1wmaa1 72 RDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN 135 (275)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 43321 147999999975322211 11111 1 11111 13345666778899999775
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.18 E-value=1.8 Score=35.62 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=49.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCC---------------CCCC------------CCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ---------------PMAP------------IEG 94 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~---------------~~~~------------~~~ 94 (249)
|++||=.| |+|-...++.+.+-. .+..|+++|-. +... -++
T Consensus 1 g~kILVTG-atGfiG~~lv~~Ll~-----------~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (393)
T d1i24a_ 1 GSRVMVIG-GDGYCGWATALHLSK-----------KNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKS 68 (393)
T ss_dssp -CEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHH-----------CcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCC
Confidence 67888777 499999988776631 24689999831 1110 146
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCC
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~ 128 (249)
++++.+|+++.+.++.+.+. .++|.|+.-++
T Consensus 69 i~~~~~Dl~d~~~l~~~~~~---~~~d~ViHlAa 99 (393)
T d1i24a_ 69 IELYVGDICDFEFLAESFKS---FEPDSVVHFGE 99 (393)
T ss_dssp CEEEESCTTSHHHHHHHHHH---HCCSEEEECCS
T ss_pred cEEEEccCCCHHHHHHHHHh---hcchheecccc
Confidence 88999999998876665543 46899987654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=87.18 E-value=1.3 Score=35.82 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=49.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCCCceEeecCCCChhhHHHH
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~~v~~~~gDi~~~~~~~~i 111 (249)
|+||=.| |+|....++.+.+-. .+.+|+++|...-. .-++++++++|+++.+.+..+
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~-----------~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~ 68 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQ-----------NGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHH
T ss_pred CEEEEEC-CCCHHHHHHHHHHHH-----------CcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHH
Confidence 4555555 789999998876631 23689999864321 124789999999998766554
Q ss_pred HHhcCCCcccEEEeCCC
Q 025715 112 IRHFDGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~ 128 (249)
.+ ..++|.|+.-++
T Consensus 69 ~~---~~~~d~ViHlAa 82 (338)
T d1udca_ 69 LH---DHAIDTVIHFAG 82 (338)
T ss_dssp HH---HTTCSEEEECCS
T ss_pred Hh---ccCCCEEEECCC
Confidence 43 346899998654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.83 E-value=1.8 Score=33.82 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.|+++|=-|++ ++....+++++.. ...+|+..|+++.. .+.++.++.+|+++.+..+.+.+.
T Consensus 5 ~GK~alITGas-~GIG~aia~~la~-----------~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1ydea1 5 AGKVVVVTGGG-RGIGAGIVRAFVN-----------SGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSE 72 (250)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHH
Confidence 46778888865 5677777776642 34799999988632 246778889999998776555433
Q ss_pred cCC--CcccEEEeCCCC
Q 025715 115 FDG--CKADLVVCDGAP 129 (249)
Q Consensus 115 ~~~--~~~DlVlsD~~~ 129 (249)
... ++.|.++.+...
T Consensus 73 ~~~~~g~iDilVnnAG~ 89 (250)
T d1ydea1 73 TIRRFGRLDCVVNNAGH 89 (250)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHhcCCCCEEEecccc
Confidence 211 479999999753
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.29 E-value=1.1 Score=33.49 Aligned_cols=96 Identities=17% Similarity=0.074 Sum_probs=51.9
Q ss_pred CcccCCCeEEEEcCCC--ChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCc-eEeecCCCChhhHH
Q 025715 37 NIFEGVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAE 109 (249)
Q Consensus 37 ~~~~~g~~vLDLG~gp--G~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v-~~~~gDi~~~~~~~ 109 (249)
.-.++|++||=-|++- |.+...+++..+ .+|++..-++.+. --+. ..+..+ +. ..
T Consensus 27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~G--------------a~Viat~~s~~k~~~~~~lGa~~vi~~~--~~--~~ 88 (176)
T d1xa0a2 27 GLTPERGPVLVTGATGGVGSLAVSMLAKRG--------------YTVEASTGKAAEHDYLRVLGAKEVLARE--DV--MA 88 (176)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTT--------------CCEEEEESCTTCHHHHHHTTCSEEEECC--------
T ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHHcC--------------CceEEecCchHHHHHHHhcccceeeecc--hh--HH
Confidence 3346788888777533 333334555554 7899988776541 0121 112111 11 01
Q ss_pred HHHHhcCCCcccEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEe
Q 025715 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (249)
Q Consensus 110 ~i~~~~~~~~~DlVlsD~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~ 168 (249)
+......++.+|+|+-.. .|. .+..+.++|++||++++--.
T Consensus 89 ~~~~~~~~~gvD~vid~v----gg~--------------~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 89 ERIRPLDKQRWAAAVDPV----GGR--------------TLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp -----CCSCCEEEEEECS----TTT--------------THHHHHHTEEEEEEEEECSC
T ss_pred HHHHHhhccCcCEEEEcC----Cch--------------hHHHHHHHhCCCceEEEeec
Confidence 112234567899888542 111 25567899999999997544
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=85.82 E-value=2.8 Score=34.25 Aligned_cols=75 Identities=20% Similarity=0.060 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCC-CC--------------------------CCCC
Q 025715 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA--------------------------PIEG 94 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~-~~--------------------------~~~~ 94 (249)
+|+||=.| |+|-...++.+.+=. +.+..|+++|... .. ...+
T Consensus 2 ~MKVLITG-~tGfIGs~lv~~LL~----------~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (383)
T d1gy8a_ 2 HMRVLVCG-GAGYIGSHFVRALLR----------DTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRY 70 (383)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHH----------HCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCC
T ss_pred cCEEEEeC-CCcHHHHHHHHHHHH----------hCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccc
Confidence 57888555 899999887775510 0236899998421 00 0125
Q ss_pred ceEeecCCCChhhHHHHHHhcCCCcccEEEeCCCC
Q 025715 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (249)
Q Consensus 95 v~~~~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~ 129 (249)
+.++.+|+++.+.+..+.+.. ..+|.|+.-++.
T Consensus 71 ~~~~~~Di~d~~~l~~~~~~~--~~~d~ViH~Aa~ 103 (383)
T d1gy8a_ 71 AALEVGDVRNEDFLNGVFTRH--GPIDAVVHMCAF 103 (383)
T ss_dssp CEEEESCTTCHHHHHHHHHHS--CCCCEEEECCCC
T ss_pred eEEEECcccCHHHhhhhhhcc--ceeehhhccccc
Confidence 778899999988766665543 358999987654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.26 E-value=1.5 Score=30.36 Aligned_cols=96 Identities=17% Similarity=0.046 Sum_probs=60.7
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC----CCCceEeecCCCChhhHHHHHHhcCCCcccEEEe
Q 025715 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (249)
Q Consensus 50 ~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~----~~~v~~~~gDi~~~~~~~~i~~~~~~~~~DlVls 125 (249)
||-|.+++.+++.+. +..|+.+|.++... ..++.++.||.++++.+.. ..-..++.|++
T Consensus 6 ~G~g~~g~~l~~~L~-------------~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~----a~i~~A~~vi~ 68 (129)
T d2fy8a1 6 CGWSESTLECLRELR-------------GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK----ANVRGARAVIV 68 (129)
T ss_dssp ESCCHHHHHHHHTSC-------------GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHH----TTCTTCSEEEE
T ss_pred ECCCHHHHHHHHHHc-------------CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHH----hhhhcCcEEEE
Confidence 467889999988774 24577788887541 3588899999999876433 33457888887
Q ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhccCCCEEEEEEecCCCHHHH
Q 025715 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (249)
Q Consensus 126 D~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk~gG~lv~k~~~~~~~~~l 176 (249)
... .+... ..+....+-+.|...++..+........+
T Consensus 69 ~~~--------~d~~n------~~~~~~~r~~~~~~~iia~~~~~~~~~~l 105 (129)
T d2fy8a1 69 NLE--------SDSET------IHCILGIRKIDESVRIIAEAERYENIEQL 105 (129)
T ss_dssp CCS--------SHHHH------HHHHHHHHHHCSSSCEEEECSSGGGHHHH
T ss_pred ecc--------chhhh------HHHHHHHHHHCCCceEEEEEcCHHHHHHH
Confidence 431 12211 11223446678888888766544433333
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.94 E-value=5.7 Score=30.10 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=62.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhH----HHHHHhcCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTA----EVVIRHFDGC 118 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~----~~i~~~~~~~ 118 (249)
.+||=-| |+|+....+++.+.. .+.+|+.+|+++...........+|+...+.. +.+...+..+
T Consensus 3 gkVlITG-as~GIG~aia~~l~~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 70 (235)
T d1ooea_ 3 GKVIVYG-GKGALGSAILEFFKK-----------NGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGS 70 (235)
T ss_dssp EEEEEET-TTSHHHHHHHHHHHH-----------TTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCchhcccccceeccccCchhHHHHHHHHHHHHhcCC
Confidence 4676555 457788888777652 34689999998754333223345555543322 2233334557
Q ss_pred cccEEEeCCCCCCCCC-CCcC---HHH-HHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 119 KADLVVCDGAPDVTGL-HDMD---EFV-QSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 119 ~~DlVlsD~~~~~~g~-~~~~---~~~-~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.|.++.+......+. ...+ .+. ..+. .......+...++++|+++..
T Consensus 71 ~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~i 127 (235)
T d1ooea_ 71 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLT 127 (235)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEe
Confidence 8999999864322111 1111 111 1111 123355667788999998864
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.54 E-value=2.8 Score=32.60 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----------CC--CCceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI--EGVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----------~~--~~v~~~~gDi~~~~~~ 108 (249)
.|+++|=-|++ +|+...+++.+.. .+.+|+.+|+++.. .. .++.+++.|+++.+..
T Consensus 2 ~GKvalITGas-~GIG~aia~~la~-----------~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v 69 (254)
T d2gdza1 2 NGKVALVTGAA-QGIGRAFAEALLL-----------KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQL 69 (254)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHH
Confidence 46777777865 6678887776642 35789999987531 11 2467789999998765
Q ss_pred HHHHHhcC--CCcccEEEeCCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGAP 129 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~~ 129 (249)
+.+.+... -+++|+++.+...
T Consensus 70 ~~~~~~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 70 RDTFRKVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCcCeecccccc
Confidence 55443321 1479999998754
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.37 E-value=1.2 Score=34.66 Aligned_cols=75 Identities=19% Similarity=0.136 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.|+++|=-|++ ++....+++++.. ...+|+.+|+++.. .++++..++.|+++.+..+++.+.
T Consensus 6 ~GK~~lITGas-~GIG~aia~~la~-----------~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 6 AGRRVLVTGAG-KGIGRGTVQALHA-----------TGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH-----------cCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHH
Confidence 57788888865 6677777776642 34799999988632 246788899999999888777766
Q ss_pred cCCCcccEEEeCCCC
Q 025715 115 FDGCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~ 129 (249)
+ +++|+++.+...
T Consensus 74 ~--g~iDilVnnAg~ 86 (244)
T d1pr9a_ 74 V--GPVDLLVNNAAV 86 (244)
T ss_dssp C--CCCCEEEECCCC
T ss_pred h--CCceEEEecccc
Confidence 6 479999998754
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=83.94 E-value=7.6 Score=30.12 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC---------CCCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~---------~~~~v~~~~gDi~~~~~~~~i 111 (249)
.|+++|=-|++ +|+...+++++.. ...+|+.+|+++.. ....+.++..|+++.+..+.+
T Consensus 5 ~gKvalITGas-~GIG~aia~~la~-----------~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~ 72 (268)
T d2bgka1 5 QDKVAIITGGA-GGIGETTAKLFVR-----------YGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNL 72 (268)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHH
Confidence 46788888855 5677777776642 34799999987632 123467788999998765554
Q ss_pred HHhcC--CCcccEEEeCCC
Q 025715 112 IRHFD--GCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~--~~~~DlVlsD~~ 128 (249)
.+... -+++|.++.+..
T Consensus 73 ~~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 73 VDTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHcCCcceeccccc
Confidence 43211 147999998864
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=5 Score=31.18 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----------CCC-CceEeecCCCChhhH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----------~~~-~v~~~~gDi~~~~~~ 108 (249)
+|+++|=.|++ ++....+++++.. .+..|+..|.++.+ ..+ .+..+++|+++.+..
T Consensus 9 k~Kv~lITGas-~GIG~aiA~~la~-----------~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v 76 (257)
T d1xg5a_ 9 RDRLALVTGAS-GGIGAAVARALVQ-----------QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDI 76 (257)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHH
Confidence 35678888865 5667777776642 34789999988632 011 356789999998765
Q ss_pred HHHHHhcC--CCcccEEEeCCCCC
Q 025715 109 EVVIRHFD--GCKADLVVCDGAPD 130 (249)
Q Consensus 109 ~~i~~~~~--~~~~DlVlsD~~~~ 130 (249)
+.+.+... -+.+|+++.+....
T Consensus 77 ~~~v~~~~~~~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 77 LSMFSAIRSQHSGVDICINNAGLA 100 (257)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCCC
T ss_pred HHHHHHHHHhcCCCCEEEeccccc
Confidence 55443321 14799999987543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=6.9 Score=28.77 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=48.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC----CCCCceEeecCCCChhhHHHHHHhcCCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~----~~~~v~~~~gDi~~~~~~~~i~~~~~~~ 118 (249)
++|+ +--|+|....++.+++-. .+.+|++++.++.+ ..++++++.+|+.+.+.+.+. +.
T Consensus 4 kkIl-V~GatG~iG~~v~~~Ll~-----------~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~a---l~-- 66 (205)
T d1hdoa_ 4 KKIA-IFGATGQTGLTTLAQAVQ-----------AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT---VA-- 66 (205)
T ss_dssp CEEE-EESTTSHHHHHHHHHHHH-----------TTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH---HT--
T ss_pred CEEE-EECCCCHHHHHHHHHHHH-----------CcCEEEEEEcChhhcccccccccccccccccchhhHHHH---hc--
Confidence 5777 445899999988765531 24689999887643 125789999999998765443 44
Q ss_pred cccEEEeCCC
Q 025715 119 KADLVVCDGA 128 (249)
Q Consensus 119 ~~DlVlsD~~ 128 (249)
.+|.|++-..
T Consensus 67 ~~d~vi~~~g 76 (205)
T d1hdoa_ 67 GQDAVIVLLG 76 (205)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEEEec
Confidence 4799887654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.82 E-value=2.6 Score=32.64 Aligned_cols=115 Identities=15% Similarity=0.125 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCCC-hHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG-~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~~ 110 (249)
.|+++|=-|++.+ |....+++++.. ...+|+..+.++... ..+...++.|+++.+..+.
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~-----------~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 75 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKE-----------AGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDA 75 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHH-----------TTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHH-----------CCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHH
Confidence 5788999998764 567777666542 346888888775321 1346678999999876555
Q ss_pred HHHhcC--CCcccEEEeCCCCCC----CC-CCCcCHH---HHHHH----HHHHHHHHHHhccCCCEEEEE
Q 025715 111 VIRHFD--GCKADLVVCDGAPDV----TG-LHDMDEF---VQSQL----ILAGLTVVTHVLKEGGKFIAK 166 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~~~----~g-~~~~~~~---~~~~l----~~~~l~~a~~~Lk~gG~lv~k 166 (249)
+.+... -++.|.++.+..... .+ ..+.... ...+. .....+.+...++++|+++.-
T Consensus 76 ~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~i 145 (256)
T d1ulua_ 76 LFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTL 145 (256)
T ss_dssp HHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred HHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEE
Confidence 433211 147999998764321 11 1111111 11221 123444556678889988754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.73 E-value=3.6 Score=31.78 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCCCceEeecCCCChhhHHHHHHh
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~~v~~~~gDi~~~~~~~~i~~~ 114 (249)
.|+++|=-|++ +|+...+++++.. ...+|+.+|.++.. .++++..++.|+++.+..+...+.
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~-----------~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 71 (242)
T d1cyda_ 4 SGLRALVTGAG-KGIGRDTVKALHA-----------SGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGG 71 (242)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHH
Confidence 46788877755 5677777776642 35799999987632 256788899999999887777766
Q ss_pred cCCCcccEEEeCCCC
Q 025715 115 FDGCKADLVVCDGAP 129 (249)
Q Consensus 115 ~~~~~~DlVlsD~~~ 129 (249)
+ ++.|.++.+...
T Consensus 72 ~--g~iDilVnnAg~ 84 (242)
T d1cyda_ 72 I--GPVDLLVNNAAL 84 (242)
T ss_dssp C--CCCSEEEECCCC
T ss_pred c--CCCeEEEECCcc
Confidence 6 479999998653
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=82.23 E-value=1.7 Score=34.83 Aligned_cols=71 Identities=24% Similarity=0.124 Sum_probs=47.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC-----CCCCceEeecCCCChhhHHHHHHhcCC
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~-----~~~~v~~~~gDi~~~~~~~~i~~~~~~ 117 (249)
|+||=.|+ +|....++.+.+-.. ...+|+++|..... ..++++++++|+++....... +.
T Consensus 1 MKILITG~-tGfiG~~l~~~Ll~~----------g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~---~~- 65 (342)
T d2blla1 1 MRVLILGV-NGFIGNHLTERLLRE----------DHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEY---HV- 65 (342)
T ss_dssp CEEEEETC-SSHHHHHHHHHHHHS----------TTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHH---HH-
T ss_pred CEEEEECC-CcHHHHHHHHHHHHC----------CCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHH---HH-
Confidence 46776775 999998887765210 12489999986522 246789999999886433221 11
Q ss_pred CcccEEEeCCC
Q 025715 118 CKADLVVCDGA 128 (249)
Q Consensus 118 ~~~DlVlsD~~ 128 (249)
..+|.|+.-++
T Consensus 66 ~~~d~Vih~a~ 76 (342)
T d2blla1 66 KKCDVVLPLVA 76 (342)
T ss_dssp HHCSEEEECBC
T ss_pred hCCCccccccc
Confidence 35899998664
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=82.07 E-value=6.5 Score=32.51 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=61.3
Q ss_pred CCeEEEEcCCCChHHHH--------HHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CCC-------C--ceEe
Q 025715 42 VKRVVDLCAAPGSWSQV--------LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE-------G--VIQV 98 (249)
Q Consensus 42 g~~vLDLG~gpG~~s~~--------l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~~-------~--v~~~ 98 (249)
..+|.|+||+.|.-|.. +.++.... + .+..+.-.|+-.|+-... .++ + +..+
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~-~----~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gv 126 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKM-G----RENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGV 126 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSS-S----CSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEE
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhc-C----CCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEec
Confidence 47899999999998853 22221100 0 001234577777875421 111 1 1223
Q ss_pred ecCCCChhhHHHHHHhcCCCcccEEEeCCCCCCCC-----C-------CC--------cC--HHHHHHHHHHHHHHHHHh
Q 025715 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG-----L-------HD--------MD--EFVQSQLILAGLTVVTHV 156 (249)
Q Consensus 99 ~gDi~~~~~~~~i~~~~~~~~~DlVlsD~~~~~~g-----~-------~~--------~~--~~~~~~l~~~~l~~a~~~ 156 (249)
-|...+. -|+.+++|+++|--+..|-. . +. .+ .....+-....|..=.+=
T Consensus 127 pGSFY~r--------LfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 198 (359)
T d1m6ex_ 127 PGSFYGR--------LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQE 198 (359)
T ss_dssp ESCSSSC--------CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhh--------cCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555542 36778999999875443311 1 00 00 111122234455555567
Q ss_pred ccCCCEEEEEEe
Q 025715 157 LKEGGKFIAKIF 168 (249)
Q Consensus 157 Lk~gG~lv~k~~ 168 (249)
|+|||.+|+.++
T Consensus 199 Lv~GG~mvl~~~ 210 (359)
T d1m6ex_ 199 VVPGGRMVLTIL 210 (359)
T ss_dssp BCTTCEEEEEEE
T ss_pred hcCCcEEEEEEe
Confidence 999999999776
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.15 E-value=0.52 Score=37.64 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=29.1
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
.+|..|||-.||+|.-..++.. ++ -+.+|+|+++.
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~-lg--------------R~~Ig~El~~~ 283 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAER-ES--------------RKWISFEMKPE 283 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHH-TT--------------CEEEEEESCHH
T ss_pred cCCCEEEecCCCCcHHHHHHHH-cC--------------CcEEEEeCCHH
Confidence 6899999999999998766654 44 68999999974
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=80.99 E-value=4.5 Score=32.26 Aligned_cols=73 Identities=22% Similarity=0.114 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCC---------CCCceEeecCCCChhhHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVV 111 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~---------~~~v~~~~gDi~~~~~~~~i 111 (249)
++++||=.| |+|....++++.+-. .+..|+++|..+... .++++++.+|+++.+.+..+
T Consensus 7 ~~KkILVTG-~tGfIGs~lv~~Ll~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~ 74 (356)
T d1rkxa_ 7 QGKRVFVTG-HTGFKGGWLSLWLQT-----------MGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLES 74 (356)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhh
Confidence 458898888 569999988776632 246899999876431 25789999999998765554
Q ss_pred HHhcCCCcccEEEeCCC
Q 025715 112 IRHFDGCKADLVVCDGA 128 (249)
Q Consensus 112 ~~~~~~~~~DlVlsD~~ 128 (249)
.+ ...+|.|+.-.+
T Consensus 75 ~~---~~~~~~v~~~aa 88 (356)
T d1rkxa_ 75 IR---EFQPEIVFHMAA 88 (356)
T ss_dssp HH---HHCCSEEEECCS
T ss_pred hh---hchhhhhhhhhc
Confidence 43 245788877554
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=80.88 E-value=5.8 Score=30.70 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------CC-CCceEeecCCCChhhHHHHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIR 113 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~~-~~v~~~~gDi~~~~~~~~i~~ 113 (249)
.|+++|=-| |.+++...+++++.. ...+|+..|+++.. .+ .+..++++|+++.+..+.+.+
T Consensus 5 ~gK~alITG-as~GIG~aia~~la~-----------~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 72 (253)
T d1hxha_ 5 QGKVALVTG-GASGVGLEVVKLLLG-----------EGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMA 72 (253)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHH-----------TTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHH
Confidence 356777666 456677777776642 34789999987632 12 345678899999876555443
Q ss_pred hcC--CCcccEEEeCCCC
Q 025715 114 HFD--GCKADLVVCDGAP 129 (249)
Q Consensus 114 ~~~--~~~~DlVlsD~~~ 129 (249)
... -+..|+++.+...
T Consensus 73 ~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 73 AVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp HHHHHHCSCCEEEECCCC
T ss_pred HHHHHhCCCCeEEecccc
Confidence 321 1479999999754
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.80 E-value=6.9 Score=30.29 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCC------C---C-CCceEeecCCCChhhHHH
Q 025715 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---I-EGVIQVQGDITNARTAEV 110 (249)
Q Consensus 41 ~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~------~---~-~~v~~~~gDi~~~~~~~~ 110 (249)
.|+++|=-| |.+++...+++++.. ....|+.+|+++.. . . ..+..+++|+++.+..+.
T Consensus 10 ~gK~alITG-as~GIG~aia~~la~-----------~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~ 77 (255)
T d1fmca_ 10 DGKCAIITG-AGAGIGKEIAITFAT-----------AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSA 77 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHT-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHH
Confidence 567777666 556778888777752 35789999987632 0 1 246778999999876555
Q ss_pred HHHhcC--CCcccEEEeCCCCC
Q 025715 111 VIRHFD--GCKADLVVCDGAPD 130 (249)
Q Consensus 111 i~~~~~--~~~~DlVlsD~~~~ 130 (249)
+.+... -+.+|+++.+....
T Consensus 78 ~~~~~~~~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 78 LADFAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHcCCCCEeeeCCcCC
Confidence 433221 14799999987543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.49 E-value=0.83 Score=35.74 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=28.9
Q ss_pred cCCCeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCC
Q 025715 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (249)
Q Consensus 40 ~~g~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~ 89 (249)
.+|..|||-.+|+|.-..++. .++ -+.+|+|+++.
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~-~lg--------------R~~ig~El~~~ 240 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAI-QEG--------------RNSICTDAAPV 240 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHH-HHT--------------CEEEEEESSTH
T ss_pred CCCCEEEecCCCCcHHHHHHH-HhC--------------CeEEEEeCCHH
Confidence 689999999999999775555 444 59999999984
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=80.29 E-value=7.7 Score=29.58 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=44.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhcCCCCCCCCCCCCCCCeEEEecCCCCCCCCCceEeecCCCChhhHHHHHHhcCCCcccE
Q 025715 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122 (249)
Q Consensus 43 ~~vLDLG~gpG~~s~~l~~~~~~~~~~~~~~~~~~~~~vvavDi~~~~~~~~v~~~~gDi~~~~~~~~i~~~~~~~~~Dl 122 (249)
|+||=.| |+|-...++.+.+. ..+.+++++..... ..+|+++.+....+.+. .++|+
T Consensus 1 MKILItG-~tGfiG~~l~~~L~------------~~g~~v~~~~~~~~-------~~~Dl~~~~~~~~~i~~---~~~D~ 57 (298)
T d1n2sa_ 1 MNILLFG-KTGQVGWELQRSLA------------PVGNLIALDVHSKE-------FCGDFSNPKGVAETVRK---LRPDV 57 (298)
T ss_dssp CEEEEEC-TTSHHHHHHHHHTT------------TTSEEEEECTTCSS-------SCCCTTCHHHHHHHHHH---HCCSE
T ss_pred CEEEEEC-CCCHHHHHHHHHHH------------hCCCEEEEECCCcc-------ccCcCCCHHHHHHHHHH---cCCCE
Confidence 4566555 78999999998876 46889998876532 45799988765554433 35899
Q ss_pred EEeCCC
Q 025715 123 VVCDGA 128 (249)
Q Consensus 123 VlsD~~ 128 (249)
|+.-++
T Consensus 58 Vih~Aa 63 (298)
T d1n2sa_ 58 IVNAAA 63 (298)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 987554
|