Citrus Sinensis ID: 025767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSDSEEVSEPE
Secondary Structure (PSIPRED)
cccccEEEEEcccccccccccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccccccccccEEEEcccccccccccccccEEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccccccccccEEEEEEEccEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccEEEccEEEccccccccHHHccccEEEEEcccccccccccccEEEEEEcEccccHHHHHHHHHHcccccccccccccccccHHHHHHcccccccHHHHHccccccEEEEEEEcccEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
miltkqyrcvhsascqctkghlsEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMvdlqssgshsvdgnWRALGKLLIYCsgckkgglfnsiqipghfvnktrfsrtsgksfllpqcrtdvlyvsdpcehldqgeegdvgfFRGVFKSFQMSKVRKMLIKRgaqlhpteacpyCKAKLWSMLQakmipqsascrlgayeDCIEYYVCLNGhmlgicsllplsdseevsepe
Flexible Loop (DISEMBL)
miltkqyrcvhsascqctkgHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMmvdlqssgshsVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKrgaqlhpteACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLlplsdseevsepe
Low Complexity Region (SEG)
MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSDSEEVSEPE
Disordered region (IsUnstruct)
***TKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQ****HSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLP***********
Disordered Region (DISOPRED)
*I*****RCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAP******************RALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICS**************
Disordered Region (DISEMBL)
MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPL**********
Disordered Region (DISPRO)
MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLP***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSDSEEVSEPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9FLZ8	249	EID1-like F-box protein 2	yes	no	0.991	0.987	0.821	1e-123
Q9LF38	293	EID1-like F-box protein 1	no	no	1.0	0.846	0.775	1e-116
Q93ZT5	272	EID1-like F-box protein 3	no	no	0.879	0.801	0.431	5e-51
Q8LEA8	336	Phytochrome A-associated	no	no	0.467	0.345	0.283	0.0008

>sp|Q9FLZ8|EDL2_ARATH EID1-like F-box protein 2 OS=Arabidopsis thaliana GN=EDL2 PE=2 SV=1

 Score =  441 bits (1133), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 203/247 (82%), Positives = 224/247 (90%), Gaps = 1/247 (0%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MI+ KQYRC+HSA+C CTKGHLSE+V+FL+ QH+NWNP  IA LSC CKWFDDLAKR+LW
Sbjct: 1   MIIAKQYRCIHSATCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCR RAPKMM DLQSSGSHSVDG+WRALGKLLIYCSG  KGGLFN +QI GHFV++TR
Sbjct: 61  KEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISGHFVHRTR 120

Query: 121 FSRTSGKSFLLPQCRT-DVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRG 179
           FSRTSG+SFL PQCRT D+LYVSDPCEHLDQGE+GD+GFFRG+FKSF MSKVRK+LIK+G
Sbjct: 121 FSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKG 180

Query: 180 AQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLS 239
              HPTE CPYCKAKLWSMLQAKMIPQSASCRLGAYED IEYYVCLNGHMLG+C+LLPLS
Sbjct: 181 TPFHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPLS 240

Query: 240 DSEEVSE 246
           DSE  SE
Sbjct: 241 DSEGASE 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis thaliana GN=EDL1 PE=2 SV=1

 Score =  418 bits (1074), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/249 (77%), Positives = 215/249 (86%), Gaps = 1/249 (0%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MIL KQY C HS SCQCTKGHL+EDV+ LVFQH+NWNPK +A LSC C+WFDD AKRVLW
Sbjct: 1   MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNS-IQIPGHFVNKT 119
           KEFC+TRAPKMM+DLQSSGSH +DGNWRALGKLLIYCSGC +GGLFNS +QIPGHFV +T
Sbjct: 61  KEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRT 120

Query: 120 RFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRG 179
           RFSRT G+S L PQCRTDVLYV DPCEHLDQGEEGDVG FRG+FKSF  SKVRK++I + 
Sbjct: 121 RFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKA 180

Query: 180 AQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLS 239
              HP+E CPYCKAKLWSMLQAK+IPQSA  RL AYEDCIEY+VCLNGH+LGIC+L PLS
Sbjct: 181 VPFHPSEVCPYCKAKLWSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLS 240

Query: 240 DSEEVSEPE 248
           DSE+    E
Sbjct: 241 DSEDAIPSE 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZT5|EDL3_ARATH EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1

 Score =  201 bits (510), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 140/220 (63%), Gaps = 2/220 (0%)

Query: 23  SEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSG-SH 81
           +E V+ LVF+ ++W+  T+  ++   + F  +A+R+LW+  C  RAP M+  L     S 
Sbjct: 36  NERVLVLVFESISWDIHTLCTIASLSRRFCAIARRILWRRLCVNRAPGMVAALSGEDPSG 95

Query: 82  SVDGNWRALGKLLIYCSGCKKGGLFNSIQ-IPGHFVNKTRFSRTSGKSFLLPQCRTDVLY 140
            +DG W AL KL+ +C G +    FN  Q   GHF  ++RFS+TSG+ FL   CR D+LY
Sbjct: 96  RIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFACESRFSKTSGRFFLPKNCRRDLLY 155

Query: 141 VSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQ 200
           +SDPCEH   G +  +G FRGVF+ F  SK R+ L++R A L     CPYC  ++WSM  
Sbjct: 156 MSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVRRQAALEEKVRCPYCGGRVWSMTA 215

Query: 201 AKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           A+++P+SA+ RLG+ E  +E++VC+NGH+ G C L+PLS 
Sbjct: 216 ARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIPLSS 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LEA8|EID1_ARATH Phytochrome A-associated F-box protein OS=Arabidopsis thaliana GN=EID1 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 121 FSRTSGKSFLLPQCRTDVLYVSD--PCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKR 178
            SR  G   L  + R D LY+ +   C H++  E+ +   FRGVFK F+ S+V + +   
Sbjct: 217 LSREQGNKLLASRFRGDCLYICNWPGCIHVE--EKRNYMLFRGVFKDFKRSRVWRTINDG 274

Query: 179 GAQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPL 238
                    C +C       L +    +         E  +  YVC NGH+ G  + LPL
Sbjct: 275 NRSKTSGLKCAFCLCDETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPL 334

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Negative regulator of the phyA signaling pathway that shifts the responsiveness of the phyA signaling system associated with hypocotyl elongation from red to far-red wavelength.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
449464252	248	PREDICTED: EID1-like F-box protein 2-lik	1.0	1.0	0.919	1e-136
225452944	246	PREDICTED: EID1-like F-box protein 2-lik	0.991	1.0	0.930	1e-135
147842426	246	hypothetical protein VITISV_009953 [Viti	0.991	1.0	0.926	1e-134
255570224	270	conserved hypothetical protein [Ricinus	1.0	0.918	0.911	1e-134
224080173	248	predicted protein [Populus trichocarpa]	1.0	1.0	0.899	1e-132
359806192	248	uncharacterized protein LOC100812977 [Gl	1.0	1.0	0.895	1e-131
224141049	248	predicted protein [Populus trichocarpa]	1.0	1.0	0.887	1e-130
359806974	248	uncharacterized protein LOC100800758 [Gl	1.0	1.0	0.887	1e-130
388501602	251	unknown [Lotus japonicus]	1.0	0.988	0.862	1e-127
356573215	247	PREDICTED: EID1-like F-box protein 2-lik	0.991	0.995	0.845	1e-126

>gi|449464252|ref|XP_004149843.1| PREDICTED: EID1-like F-box protein 2-like [Cucumis sativus] gi|449523309|ref|XP_004168666.1| PREDICTED: EID1-like F-box protein 2-like [Cucumis sativus]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/248 (91%), Positives = 239/248 (96%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRCVHSASCQCTKGHLSED IFLVFQH+NWNPK IA LSC CKWFDDLAKRVLW
Sbjct: 1   MILTKQYRCVHSASCQCTKGHLSEDAIFLVFQHLNWNPKLIATLSCACKWFDDLAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCRTRAPKMM+DLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFN+IQIPGHFV +TR
Sbjct: 61  KEFCRTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNNIQIPGHFVYRTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFL+PQCRTD+LYVSDPCEHLDQGEEGD+GFFRG+FKSF MSKVRKMLIKRGA
Sbjct: 121 FSRTSGKSFLMPQCRTDILYVSDPCEHLDQGEEGDIGFFRGIFKSFSMSKVRKMLIKRGA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           +LHPTE CPYCKAKLWSMLQAKMIPQSASCRLGAYEDCI+YYVCLNGHMLGIC+LLPLSD
Sbjct: 181 ELHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIDYYVCLNGHMLGICTLLPLSD 240

Query: 241 SEEVSEPE 248
           SEE SE E
Sbjct: 241 SEETSELE 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452944|ref|XP_002284224.1| PREDICTED: EID1-like F-box protein 2-like [Vitis vinifera]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/246 (93%), Positives = 236/246 (95%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRC+HSASC CTKGHLSEDVIFLVFQ +NWNPK IA LSCTCKWFDDLAKRVLW
Sbjct: 1   MILTKQYRCIHSASCACTKGHLSEDVIFLVFQQLNWNPKLIATLSCTCKWFDDLAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCR RAPKMM+DLQSSGSHSVDGNWRALGKLLIYCSGC +GGLFNSIQIPGHFV +TR
Sbjct: 61  KEFCRARAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTRGGLFNSIQIPGHFVYRTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSF MSKVRKMLIK+GA
Sbjct: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFSMSKVRKMLIKKGA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           QLHPTE CPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGIC+LLPLSD
Sbjct: 181 QLHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICTLLPLSD 240

Query: 241 SEEVSE 246
           SEE SE
Sbjct: 241 SEEASE 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147842426|emb|CAN69516.1| hypothetical protein VITISV_009953 [Vitis vinifera]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/246 (92%), Positives = 235/246 (95%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRC+HSASC CTKGHLSEDVIFLVFQ +NWNPK IA LSCTCKWFDDLAKRVLW
Sbjct: 1   MILTKQYRCIHSASCACTKGHLSEDVIFLVFQQLNWNPKLIATLSCTCKWFDDLAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCR RAPKMM+DLQSSGSHSVDGNWRALGKLLIYCSGC +GGLFNSIQIPGHFV +TR
Sbjct: 61  KEFCRARAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTRGGLFNSIQIPGHFVYRTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVG FRGVFKSF MSKVRKMLIK+GA
Sbjct: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGXFRGVFKSFSMSKVRKMLIKKGA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           QLHPTE CPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGIC+LLPLSD
Sbjct: 181 QLHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICTLLPLSD 240

Query: 241 SEEVSE 246
           SEE SE
Sbjct: 241 SEEASE 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570224|ref|XP_002526072.1| conserved hypothetical protein [Ricinus communis] gi|223534569|gb|EEF36266.1| conserved hypothetical protein [Ricinus communis]

 Score =  481 bits (1239), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/248 (91%), Positives = 235/248 (94%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRC+HS+SCQCTKGHLSEDVIFLVFQ +NWNPK IA LSC CKWFDDLAKRVLW
Sbjct: 23  MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKMIATLSCVCKWFDDLAKRVLW 82

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCR RAPKMM+DLQSSGSHSVDGNWRALGKLLIYCSGC KGGLFNSI IPGHFV +TR
Sbjct: 83  KEFCRARAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFNSIHIPGHFVYRTR 142

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSF MSKVRKMLIKR A
Sbjct: 143 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFSMSKVRKMLIKRRA 202

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           QLHPTE CPYCKAKLWSMLQAKMIPQSASCRLG+YEDC+EYYVCLNGH+LGIC+LLPLSD
Sbjct: 203 QLHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGSYEDCVEYYVCLNGHVLGICTLLPLSD 262

Query: 241 SEEVSEPE 248
           SEE SE E
Sbjct: 263 SEEASELE 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080173|ref|XP_002306041.1| predicted protein [Populus trichocarpa] gi|118481481|gb|ABK92683.1| unknown [Populus trichocarpa] gi|222849005|gb|EEE86552.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/248 (89%), Positives = 235/248 (94%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRC+HS+SCQCTKGHLSEDVIFLVFQ +NWNPK IA +SC CKWFDDLAKRVLW
Sbjct: 1   MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKFIATMSCVCKWFDDLAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCRTRAPKMM+DLQSSGSHSVDGNWRALGKLLIYCSGC KGGLFN+I IPGHFV +TR
Sbjct: 61  KEFCRTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFNNINIPGHFVYRTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQG+EGDVGFFRG+FKSF MSKVRKMLIKR A
Sbjct: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGDEGDVGFFRGIFKSFSMSKVRKMLIKRKA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           QLHPTE CPYCKAKLWSM QA+MIPQSASCRLGAY+DCIEYYVCLNGHMLGIC+LLPLSD
Sbjct: 181 QLHPTEVCPYCKAKLWSMQQAEMIPQSASCRLGAYDDCIEYYVCLNGHMLGICTLLPLSD 240

Query: 241 SEEVSEPE 248
           SEE SE E
Sbjct: 241 SEEASELE 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806192|ref|NP_001241203.1| uncharacterized protein LOC100812977 [Glycine max] gi|255639792|gb|ACU20189.1| unknown [Glycine max]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/248 (89%), Positives = 234/248 (94%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRC+HSASCQCTKGHLSEDVIFLVF ++NWNPK IA LSC CKWFDDLAKRVLW
Sbjct: 1   MILTKQYRCIHSASCQCTKGHLSEDVIFLVFHNLNWNPKLIATLSCVCKWFDDLAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCRTRAPKM+ DLQS+GSH VDGNWRALGKLLIYCSGC KGGLFNSIQIPGHFV +TR
Sbjct: 61  KEFCRTRAPKMLCDLQSNGSHIVDGNWRALGKLLIYCSGCTKGGLFNSIQIPGHFVYQTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRG+FKSF  SKVRKMLI +GA
Sbjct: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGIFKSFATSKVRKMLINKGA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           +LHPTE CPYCKAKLWSMLQAKMIPQSASCRLG+Y+DCIEYYVCLNGHMLGIC+LLPLSD
Sbjct: 181 KLHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGSYDDCIEYYVCLNGHMLGICTLLPLSD 240

Query: 241 SEEVSEPE 248
           SEE SE E
Sbjct: 241 SEEASELE 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141049|ref|XP_002323887.1| predicted protein [Populus trichocarpa] gi|222866889|gb|EEF04020.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/248 (88%), Positives = 232/248 (93%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRCVHS+SCQC KGHLSEDVIFLVFQ +NWNPK IA LSC CKWFDD AKRVLW
Sbjct: 1   MILTKQYRCVHSSSCQCIKGHLSEDVIFLVFQQLNWNPKLIATLSCVCKWFDDFAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           K FCR RAPKMM+DLQSSGSHSVDGNWRALGKLLIYCSGC KGGLFN++ IPGHFV +TR
Sbjct: 61  KAFCRARAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFNNVHIPGHFVYRTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQG+EGDVGFFRG+FKSF MSKVRKMLIKRGA
Sbjct: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGDEGDVGFFRGIFKSFSMSKVRKMLIKRGA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           QLHPTE CPYCK KLWSM QA+MIPQSASCRLGAY+DCIEYYVCLNGH+LGIC+LLPLSD
Sbjct: 181 QLHPTEVCPYCKTKLWSMQQAEMIPQSASCRLGAYDDCIEYYVCLNGHVLGICTLLPLSD 240

Query: 241 SEEVSEPE 248
           SEEVSE E
Sbjct: 241 SEEVSELE 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806974|ref|NP_001241585.1| uncharacterized protein LOC100800758 [Glycine max] gi|255637097|gb|ACU18880.1| unknown [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/248 (88%), Positives = 233/248 (93%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRC+HSASCQCTKGHLSED+IFLVF ++NWNPK IA LSC CKWFDDLAKRVLW
Sbjct: 1   MILTKQYRCIHSASCQCTKGHLSEDMIFLVFHNLNWNPKLIATLSCVCKWFDDLAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCRTRAPKM+ DLQS+GSH VDGNWRALGKLLIYCSGC KGGLFNSIQIPGHFV +TR
Sbjct: 61  KEFCRTRAPKMLCDLQSNGSHIVDGNWRALGKLLIYCSGCTKGGLFNSIQIPGHFVYQTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFLLPQCRTDVLYV DPCEHLDQGEEGDVGFFRG+FKSF  SKVRKMLI +GA
Sbjct: 121 FSRTSGKSFLLPQCRTDVLYVCDPCEHLDQGEEGDVGFFRGIFKSFATSKVRKMLINKGA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           +LHPTE CPYCKAKLWSMLQAKMIPQSASCRLG+Y+DCIEYYVCLNGHMLGIC+LLPLSD
Sbjct: 181 KLHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGSYDDCIEYYVCLNGHMLGICTLLPLSD 240

Query: 241 SEEVSEPE 248
           SEE SE E
Sbjct: 241 SEEASELE 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501602|gb|AFK38867.1| unknown [Lotus japonicus]

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/248 (86%), Positives = 229/248 (92%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MI+TKQYRC+HS+SCQCTKGHLSE+VIFLVF H+ WNPK IAALSC CKWFDD AKRVLW
Sbjct: 1   MIITKQYRCIHSSSCQCTKGHLSEEVIFLVFHHLKWNPKLIAALSCVCKWFDDFAKRVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFCRTRAPKMM+DLQSSGSHSVDGNWRALGKLLIYCSGC KGGLFN I IPGHFV +TR
Sbjct: 61  KEFCRTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFNRIHIPGHFVYQTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSG+SFLLPQCRTDVLYV DPCEHLDQGEEGDVGFFRGVFKSF  SKVRKMLI R A
Sbjct: 121 FSRTSGRSFLLPQCRTDVLYVCDPCEHLDQGEEGDVGFFRGVFKSFATSKVRKMLINRRA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           +L  TE CPYCKAKLWSMLQAKMIP+SASCRLG+YEDC+EYYVCLNGH+LGIC+LLPLSD
Sbjct: 181 KLRQTEVCPYCKAKLWSMLQAKMIPESASCRLGSYEDCLEYYVCLNGHLLGICTLLPLSD 240

Query: 241 SEEVSEPE 248
           SE+ SE E
Sbjct: 241 SEDASELE 248

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573215|ref|XP_003554759.1| PREDICTED: EID1-like F-box protein 2-like [Glycine max]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/246 (84%), Positives = 232/246 (94%)

Query: 1   MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
           MILTKQYRCVHSASCQCTKGH+SEDVIFLVFQH+NWNPK IAALSC CKWFDDL+K+VLW
Sbjct: 1   MILTKQYRCVHSASCQCTKGHVSEDVIFLVFQHLNWNPKLIAALSCVCKWFDDLSKQVLW 60

Query: 61  KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
           KEFC+TRAPKMM+DLQSSGSHSVDGNWRALGKLLI+CSGC++GGLFN++Q+PGHFVNKTR
Sbjct: 61  KEFCKTRAPKMMLDLQSSGSHSVDGNWRALGKLLIFCSGCRQGGLFNNVQVPGHFVNKTR 120

Query: 121 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGA 180
           FSRTSGKSFL+PQC  DVLYVSDPCEH+ Q EEGD+GFFRG+FKSF  S V++MLI RGA
Sbjct: 121 FSRTSGKSFLMPQCINDVLYVSDPCEHIGQSEEGDLGFFRGIFKSFASSNVKRMLINRGA 180

Query: 181 QLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSD 240
           QLH TE CPYCKAKLWSMLQA MIPQ+ASCRLG+YED IEYYVCLNGH+LG+C+LLPLSD
Sbjct: 181 QLHQTEICPYCKAKLWSMLQANMIPQTASCRLGSYEDYIEYYVCLNGHLLGVCTLLPLSD 240

Query: 241 SEEVSE 246
           SE+VSE
Sbjct: 241 SEDVSE 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2175668	249	EDL2 "AT5G39360" [Arabidopsis	0.991	0.987	0.821	6.2e-117
TAIR|locus:2180907	293	EDL1 "AT5G15440" [Arabidopsis	1.0	0.846	0.775	8.7e-111
TAIR|locus:2099227	272	EDL3 "EID1-like 3" [Arabidopsi	0.891	0.812	0.434	2.8e-50
TAIR|locus:2133259	336	EID1 "EMPFINDLICHER IM DUNKELR	0.459	0.339	0.291	1.6e-11

TAIR|locus:2175668 EDL2 "AT5G39360" [Arabidopsis thaliana (taxid:3702)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 203/247 (82%), Positives = 224/247 (90%)

Query:     1 MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
             MI+ KQYRC+HSA+C CTKGHLSE+V+FL+ QH+NWNP  IA LSC CKWFDDLAKR+LW
Sbjct:     1 MIIAKQYRCIHSATCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLW 60

Query:    61 KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNSIQIPGHFVNKTR 120
             KEFCR RAPKMM DLQSSGSHSVDG+WRALGKLLIYCSG  KGGLFN +QI GHFV++TR
Sbjct:    61 KEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISGHFVHRTR 120

Query:   121 FSRTSGKSFLLPQCRTD-VLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRG 179
             FSRTSG+SFL PQCRTD +LYVSDPCEHLDQGE+GD+GFFRG+FKSF MSKVRK+LIK+G
Sbjct:   121 FSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKG 180

Query:   180 AQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLS 239
                HPTE CPYCKAKLWSMLQAKMIPQSASCRLGAYED IEYYVCLNGHMLG+C+LLPLS
Sbjct:   181 TPFHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPLS 240

Query:   240 DSEEVSE 246
             DSE  SE
Sbjct:   241 DSEGASE 247

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180907 EDL1 "AT5G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 193/249 (77%), Positives = 215/249 (86%)

Query:     1 MILTKQYRCVHSASCQCTKGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLW 60
             MIL KQY C HS SCQCTKGHL+EDV+ LVFQH+NWNPK +A LSC C+WFDD AKRVLW
Sbjct:     1 MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLW 60

Query:    61 KEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGCKKGGLFNS-IQIPGHFVNKT 119
             KEFC+TRAPKMM+DLQSSGSH +DGNWRALGKLLIYCSGC +GGLFNS +QIPGHFV +T
Sbjct:    61 KEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRT 120

Query:   120 RFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRG 179
             RFSRT G+S L PQCRTDVLYV DPCEHLDQGEEGDVG FRG+FKSF  SKVRK++I + 
Sbjct:   121 RFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKA 180

Query:   180 AQLHPTEACPYCKAKLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLS 239
                HP+E CPYCKAKLWSMLQAK+IPQSA  RL AYEDCIEY+VCLNGH+LGIC+L PLS
Sbjct:   181 VPFHPSEVCPYCKAKLWSMLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLS 240

Query:   240 DSEEVSEPE 248
             DSE+    E
Sbjct:   241 DSEDAIPSE 249

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099227 EDL3 "EID1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 97/223 (43%), Positives = 142/223 (63%)

Query:    23 SEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSG-SH 81
             +E V+ LVF+ ++W+  T+  ++   + F  +A+R+LW+  C  RAP M+  L     S 
Sbjct:    36 NERVLVLVFESISWDIHTLCTIASLSRRFCAIARRILWRRLCVNRAPGMVAALSGEDPSG 95

Query:    82 SVDGNWRALGKLLIYCSGCKKGGLFNSIQ-IPGHFVNKTRFSRTSGKSFLLPQCRTDVLY 140
              +DG W AL KL+ +C G +    FN  Q   GHF  ++RFS+TSG+ FL   CR D+LY
Sbjct:    96 RIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFACESRFSKTSGRFFLPKNCRRDLLY 155

Query:   141 VSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQ 200
             +SDPCEH   G +  +G FRGVF+ F  SK R+ L++R A L     CPYC  ++WSM  
Sbjct:   156 MSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVRRQAALEEKVRCPYCGGRVWSMTA 215

Query:   201 AKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSDSEE 243
             A+++P+SA+ RLG+ E  +E++VC+NGH+ G C L+PLS  EE
Sbjct:   216 ARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIPLSSEEE 258

GO:0005634 "nucleus" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2133259 EID1 "EMPFINDLICHER IM DUNKELROTEN LICHT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 35/120 (29%), Positives = 55/120 (45%)

Query:   122 SRTSGKSFLLPQCRTDVLYVSD-P-CEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKRG 179
             SR  G   L  + R D LY+ + P C H++  E+ +   FRGVFK F+ S+V + +    
Sbjct:   218 SREQGNKLLASRFRGDCLYICNWPGCIHVE--EKRNYMLFRGVFKDFKRSRVWRTINDGN 275

Query:   180 AQLHPTEACPYCKA-KLWSMLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPL 238
                     C +C   + W +  +  + +         E  +  YVC NGH+ G  + LPL
Sbjct:   276 RSKTSGLKCAFCLCDETWDLHSSFCLRRVFGFHDDG-EPVVRAYVCENGHVSGAWTALPL 334

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=RCA;IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLZ8	EDL2_ARATH	No assigned EC number	0.8218	0.9919	0.9879	yes	no
Q9LF38	EDL1_ARATH	No assigned EC number	0.7751	1.0	0.8464	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IV1139 SubName- Full=Putative uncharacterized protein; (248 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG2997	366	consensus F-box protein FBX9 [General function pre	99.7
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	99.66
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.78
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.31
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	88.42

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=99.70  E-value=1.4e-17  Score=156.08  Aligned_cols=139  Identities=21%  Similarity=0.294  Sum_probs=122.2

Q ss_pred             CcCcHHHHHHHHHhcC---CChHHHHHHhhcchhHHHHHHH-hhhHHHHHhhhhhhHHhhhhcC-CCCCCCcHHHHHhhh
Q 025767           20 GHLSEDVIFLVFQHMN---WNPKTIAALSCTCKWFDDLAKR-VLWKEFCRTRAPKMMVDLQSSG-SHSVDGNWRALGKLL   94 (248)
Q Consensus        20 g~L~EdvL~~VF~~ln---wdPr~lar~AcVcr~f~~lar~-vlWr~~C~~raP~mv~~L~~~~-~~~~~G~W~aL~KLl   94 (248)
                      ..||||||+.||+.+=   -|-+.|.++|||||.|...+|+ -+||.+|.+.|.+|+-.|-... .+.+.++|+.|+   
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mf---  184 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMF---  184 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHH---
Confidence            6899999999999986   1339999999999999999999 9999999999999988777532 388899999999   


Q ss_pred             hcccCCCCCCcccccccCCceeccceeecccCCccccccccCCeeEeeC---------------CCcccCCCCCceeeee
Q 025767           95 IYCSGCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSD---------------PCEHLDQGEEGDVGFF  159 (248)
Q Consensus        95 ~~C~G~~~~~~f~~~~~pgHf~~~srfSrtsG~s~L~~rcR~D~LYVsD---------------~CeH~~~~e~r~~g~F  159 (248)
                                                        +.+||.|+|++|||.               .++|++. |+||++||
T Consensus       185 ----------------------------------l~RpRvrFdG~YIS~~tYiR~G~~~~~~~~~PVHlV~-YYRYiRFy  229 (366)
T KOG2997|consen  185 ----------------------------------LERPRVRFDGVYISKTTYIRQGENSLDSFYRPVHLVE-YYRYIRFY  229 (366)
T ss_pred             ----------------------------------hhCcceeecceEEEEEeEeecCchhhhhhcCcceeeE-EEEEEEec
Confidence                                              999999999999998               8999998 99999999


Q ss_pred             c-ccc--c--chhHHHHHHHHHHhccCCCCCCCCCCccceeccccc
Q 025767          160 R-GVF--K--SFQMSKVRKMLIKRGAQLHPTEACPYCKAKLWSMLQ  200 (248)
Q Consensus       160 R-GvF--K--~F~~S~vrr~L~~r~a~~~~~~~CpfCg~~~Wsm~~  200 (248)
                      + |-|  +  +-.-+.|.+-|.-+..+    ..-++||.++.++..
T Consensus       230 P~G~~l~~~SsdEP~dvVk~~s~~Nt~----~~s~~~g~y~ls~~d  271 (366)
T KOG2997|consen  230 PDGHVLMLTSSDEPQDVVKRLSTRNTR----RDSILLGHYRLSQSD  271 (366)
T ss_pred             CCCcEEEEeCCcChHHHHHhhhhccCc----chhhhcccccccCCc
Confidence            9 988  3  37888999999886666    456899998877766

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=6e-18  Score=159.00  Aligned_cols=219  Identities=24%  Similarity=0.306  Sum_probs=196.0

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHHhhhHHHHHhhhhhhHHhhhhcCC-CCCCCcHHHHHhhhhccc
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWKEFCRTRAPKMMVDLQSSGS-HSVDGNWRALGKLLIYCS   98 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~vlWr~~C~~raP~mv~~L~~~~~-~~~~G~W~aL~KLl~~C~   98 (248)
                      ++-.+.++...+.+..|+-.-...++=.-.++...++...|+..|+.+.|+|+..+....+ .+.+++|.+.++++|+|.
T Consensus        33 ~~~a~k~~~~~d~~~~~~~~~~~~I~~l~~~~~~~~~~~~~~~~~v~~v~gvv~~~~~~~~~~~~~~~~~~~~~~k~~~~  112 (355)
T KOG1571|consen   33 GKEAEKVLVLVDLKSSWDIAPEKKIPYLVIRGCAIARKETLRSLCVSNVPGVVQALTLEEPKGRRDGGGHWNANSKIFHE  112 (355)
T ss_pred             hhhccceecchhhhhhhhhccccchHHHHHhhcccccccchHHhhcccCCceEEEeeeccceeeeccceeeccceeeccC
Confidence            6677888899999999998888888888888888999999999999999999998885433 666789999999999999


Q ss_pred             CCCCCCcccccccCCceeccceeecccCCccccccccCCeeEeeCCCcccCCCCCceeeeecccccchhHHHHHHHHHHh
Q 025767           99 GCKKGGLFNSIQIPGHFVNKTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDVGFFRGVFKSFQMSKVRKMLIKR  178 (248)
Q Consensus        99 G~~~~~~f~~~~~pgHf~~~srfSrtsG~s~L~~rcR~D~LYVsD~CeH~~~~e~r~~g~FRGvFK~F~~S~vrr~L~~r  178 (248)
                      |-.....|+-.+.-| |+...++|+++|.-+|+-+++.|.+|-|+||+|.+.+-....|+++|.|+.+++...   +-.+
T Consensus       113 ~~~~~~~~l~~q~~~-~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s~~~~~~~~~sg~~~~~~~~~~~~l~---~~~~  188 (355)
T KOG1571|consen  113 GGNEVPFFLRSQTTG-FACEVRVSKTLGRLFLPLNVVYDLFEPSDPCSLVDVGGGYHSGVRRGGFRETERVLP---LGTR  188 (355)
T ss_pred             CCcccceeeccCCcc-eeeeeeeecceeeeeecceeeeccccccCcceeeecccccccceeeecccceEEeec---cccc
Confidence            998876666555555 788899999999999999999999999999999998777888999999999887655   6677


Q ss_pred             ccCCCCCCCCCCccceecc-cccccccccccccccCCccCceEEEEeeCCeeeeeeeeeccCCCC
Q 025767          179 GAQLHPTEACPYCKAKLWS-MLQAKMIPQSASCRLGAYEDCIEYYVCLNGHMLGICSLLPLSDSE  242 (248)
Q Consensus       179 ~a~~~~~~~CpfCg~~~Ws-m~~a~~~p~sa~rRl~~ye~~veyyVC~NGHv~G~~tl~pls~se  242 (248)
                      .+.+.+.+.|+||+-++|+ |+.+..+++|+..+|.+-++....++|+|+|++|.+|.++||.-+
T Consensus       189 ~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~~~~~~~~ills~~~  253 (355)
T KOG1571|consen  189 LTALGELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGDLSFFVKVNGMVFGTLGVILLSFIV  253 (355)
T ss_pred             eeeeehheecCCCceEecCCccCcceeeccchhhHHHhhccceeeeeecceeeeeeeEEeehHHH
Confidence            7889999999999999999 999999999999999999999999999999999999999999654

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.78  E-value=4.2e-09  Score=70.98  Aligned_cols=45  Identities=22%  Similarity=0.718  Sum_probs=38.7

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHHHHHh
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKEFCRT   66 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~~C~~   66 (248)
                      ..||+||+.+||+.|+  |++++++++|||+|+.++.. .+|++.|.+
T Consensus         2 ~~LP~Eil~~If~~L~--~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r   47 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLD--PRDLLRLSLVCRRWRRIANDNSLWRRLCLR   47 (47)
T ss_dssp             CCS-HHHHHHHHTTS---HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred             hHhHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence            3699999999999995  99999999999999999976 999998864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.31  E-value=8.1e-07  Score=59.21  Aligned_cols=42  Identities=24%  Similarity=0.522  Sum_probs=36.7

Q ss_pred             cCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHHHH
Q 025767           21 HLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKEFC   64 (248)
Q Consensus        21 ~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~~C   64 (248)
                      .||+|++.+||.+|+  |.+++++++||++|++++++ .+|+..|
T Consensus         5 ~LP~~il~~Il~~l~--~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    5 DLPDEILQEILSYLD--PKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HS-HHHHHHHHHTS---HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             HCCHHHHHHHHHHCc--HHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            489999999999998  99999999999999999999 8888876

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.20  E-value=1.3e-06  Score=55.59  Aligned_cols=39  Identities=15%  Similarity=0.422  Sum_probs=36.2

Q ss_pred             CcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHH
Q 025767           22 LSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKE   62 (248)
Q Consensus        22 L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~   62 (248)
                      ||+|++..||..++  |.+++++++|||+|+.+++. .+|++
T Consensus         1 lP~~ll~~I~~~l~--~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLP--PKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            68999999999997  99999999999999999988 88875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.42  E-value=0.28  Score=47.76  Aligned_cols=41  Identities=27%  Similarity=0.575  Sum_probs=37.7

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHH
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKE   62 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~   62 (248)
                      -.|||++++.||+-|-  -.+|-+++-||+||--++++ -+|-.
T Consensus        99 ~slpDEill~IFs~L~--kk~LL~~~~VC~Rfyr~~~de~lW~~  140 (419)
T KOG2120|consen   99 DSLPDEILLGIFSCLC--KKELLKVSGVCKRFYRLASDESLWQT  140 (419)
T ss_pred             ccCCHHHHHHHHHhcc--HHHHHHHHHHHHHHhhccccccceee
Confidence            4799999999999998  88999999999999999998 88864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	8e-04

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 21 HLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAK-RVLWKEFCRTRAPK 70
           L  DV   +   ++  P  +  L  T  ++++  +  +LW+ F     P 
Sbjct: 7  RLPIDVQLYILSFLS--PHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPS 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.57
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.4
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.01
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.45
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.16

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.57  E-value=3.4e-08  Score=66.64  Aligned_cols=42  Identities=21%  Similarity=0.497  Sum_probs=37.3

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHHH
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKEF   63 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~~   63 (248)
                      ..||+|+|..||.+|.  |++++++++|||+|+.++.. .+||.+
T Consensus        10 ~~LP~eil~~I~~~L~--~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A           10 DSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             CSSCHHHHHHHHTTSC--GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             HHCCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            6799999999999997  99999999999999999998 899863

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.40  E-value=2.4e-07  Score=84.26  Aligned_cols=69  Identities=16%  Similarity=0.363  Sum_probs=53.9

Q ss_pred             cCCcCcHHHHHHHHHhcCCChHHHH-HHhhcchhHHHHHHH-hhhHHHHHhhhhhhHHhhhhcCCCCCCCcHHHHHhh
Q 025767           18 TKGHLSEDVIFLVFQHMNWNPKTIA-ALSCTCKWFDDLAKR-VLWKEFCRTRAPKMMVDLQSSGSHSVDGNWRALGKL   93 (248)
Q Consensus        18 ~~g~L~EdvL~~VF~~lnwdPr~la-r~AcVcr~f~~lar~-vlWr~~C~~raP~mv~~L~~~~~~~~~G~W~aL~KL   93 (248)
                      .-..|+||+|.+||.+|.  |+.|+ +.++|||+|++|+.+ .+||..|....  ......   ......+|+.+...
T Consensus        50 ~~~~LP~ell~~Il~~Lp--~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g--~~~~~~---~~~~~~~Wk~~y~~  120 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELP--ATELVQACRLVCLRWKELVDGAPLWLLKCQQEG--LVPEGS---ADEERDHWQQFYFL  120 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSC--HHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT--CCCC--------CCSCHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCC--HHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC--cccccc---cCCCCCChhhhheh
Confidence            347899999999999997  99999 999999999999998 99999999871  111111   11246779999744

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.23  E-value=7.4e-07  Score=82.25  Aligned_cols=47  Identities=21%  Similarity=0.574  Sum_probs=44.5

Q ss_pred             cCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHHHHHhhhh
Q 025767           21 HLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKEFCRTRAP   69 (248)
Q Consensus        21 ~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~~C~~raP   69 (248)
                      .||+||++.||+.|+  |++||++++|||.|+.+|.+ .|||.+|.+..|
T Consensus         7 ~LP~ei~l~IlsfL~--p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~   54 (312)
T 3l2o_B            7 RLPIDVQLYILSFLS--PHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP   54 (312)
T ss_dssp             HSCHHHHHHHHHTSC--HHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred             hCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence            589999999999998  99999999999999999999 999999997655

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.04  E-value=3.4e-06  Score=73.36  Aligned_cols=48  Identities=17%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             CcCcHH----HHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHHHHHhhhh
Q 025767           20 GHLSED----VIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKEFCRTRAP   69 (248)
Q Consensus        20 g~L~Ed----vL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~~C~~raP   69 (248)
                      ..||+|    |+..||+.|.  |++|+++++|||+|+.++.. .+||.+|.+.++
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~--~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~   64 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLD--AKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCC--HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHCCcchHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence            458899    9999999997  99999999999999999998 999999998864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.01  E-value=4.3e-06  Score=72.54  Aligned_cols=47  Identities=26%  Similarity=0.669  Sum_probs=43.8

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHHHHHhhh
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKEFCRTRA   68 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~~C~~ra   68 (248)
                      ..||+|++..||..|.  |++|+++++|||+|+.++.+ .+||.+|.+..
T Consensus        20 ~~lp~e~~~~i~~~l~--~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~   67 (445)
T 2ovr_B           20 SLLPKELALYVLSFLE--PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG   67 (445)
T ss_dssp             TSSCHHHHHHHHTTSC--HHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred             HHCCHHHHHHHHHhCC--HHHHHHHHHHhHHHHhhcCchhHhhhheeecc
Confidence            6899999999999996  99999999999999999998 79999997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.91  E-value=7.6e-06  Score=70.69  Aligned_cols=46  Identities=13%  Similarity=0.310  Sum_probs=42.1

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH--hhhHHHHHhh
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR--VLWKEFCRTR   67 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~--vlWr~~C~~r   67 (248)
                      ..||+|+++.||+.|.  |++|++++.|||+|+.++..  .+||++|.+.
T Consensus        16 ~~lp~~~~~~i~~~l~--~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~   63 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQ--FEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   63 (464)
T ss_dssp             HHSCHHHHHHHHTTSC--HHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence            4699999999999995  99999999999999999985  9999999643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.57  E-value=0.00093  Score=56.32  Aligned_cols=41  Identities=22%  Similarity=0.493  Sum_probs=36.9

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHH
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKE   62 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~   62 (248)
                      ..||+||+..||+.|+  ++++.+++.|||+|+.++.. .+|+.
T Consensus        10 ~~LP~eil~~If~~L~--~~d~~~~~~vc~~W~~~~~~~~~~~~   51 (336)
T 2ast_B           10 DSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLWQT   51 (336)
T ss_dssp             SSSCHHHHHHHHTTSC--HHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred             hhCCHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHhcCchhhee
Confidence            6799999999999997  99999999999999999864 56764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.45  E-value=0.0095  Score=53.87  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=32.0

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHHhhhH
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKRVLWK   61 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~vlWr   61 (248)
                      ..||||||..||+.|. +++++++++.|||+|+.+ ....|+
T Consensus         7 ~~LPdevL~~If~~L~-~~~d~~~~s~vck~W~~~-~~~~~~   46 (594)
T 2p1m_B            7 LSFPEEVLEHVFSFIQ-LDKDRNSVSLVCKSWYEI-ERWCRR   46 (594)
T ss_dssp             ---CHHHHHHHHHTCC-CHHHHHHHHTSCHHHHHH-HHHHCC
T ss_pred             hhCCHHHHHHHHhhcC-CchhHHHHHHHHHHHHHh-hhhhce
Confidence            5799999999999996 589999999999999998 334444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.16  E-value=0.027  Score=50.97  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             CCcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHH
Q 025767           19 KGHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLA   55 (248)
Q Consensus        19 ~g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~la   55 (248)
                      ...||||+|..||+.|. +++++++++.|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~-~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYIT-DPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCC-CHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcC-CHHHHHHHHHHhHHHHHhh
Confidence            35699999999999994 4999999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.01
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.68
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.4

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.3e-10  Score=85.15  Aligned_cols=71  Identities=18%  Similarity=0.445  Sum_probs=55.8

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHHHHHhhhhhhHH---hhhhcCCCCCCCcHHHHHh
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKEFCRTRAPKMMV---DLQSSGSHSVDGNWRALGK   92 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~~C~~raP~mv~---~L~~~~~~~~~G~W~aL~K   92 (248)
                      ..||+||+..||+.|  ||++|+++++|||+|+.++.. .+||.+|.+.+...-.   ..........+++|+.+.+
T Consensus        20 ~~LP~Eil~~Ils~L--d~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~   94 (102)
T d2ovrb1          20 SLLPKELALYVLSFL--EPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI   94 (102)
T ss_dssp             TSSCHHHHHHHHTTS--CHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred             hhCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHH
Confidence            679999999999999  599999999999999999998 9999999887652211   1111223556678998874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=9.1e-09  Score=77.50  Aligned_cols=46  Identities=15%  Similarity=0.322  Sum_probs=42.0

Q ss_pred             CcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhhHHHHHhhhh
Q 025767           22 LSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLWKEFCRTRAP   69 (248)
Q Consensus        22 L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlWr~~C~~raP   69 (248)
                      |.|||++.||+.|+  |++|+++|+|||+|+.++.+ .+||.+|.+...
T Consensus        18 l~~EI~~~Ils~Ld--~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~   64 (118)
T d1p22a1          18 GLDHIAENILSYLD--AKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (118)
T ss_dssp             TCHHHHHHHHTTCC--HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhcc
Confidence            44799999999995  99999999999999999998 999999987654

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=8.4e-09  Score=66.66  Aligned_cols=39  Identities=23%  Similarity=0.506  Sum_probs=35.8

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH-hhh
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR-VLW   60 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~-vlW   60 (248)
                      ..||+||+..||+.|+  |++++++++|||+|+.++.+ .+|
T Consensus         2 ~~LP~eil~~If~~L~--~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSC--GGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCcccC
Confidence            3699999999999997  99999999999999999987 666

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.3e-07  Score=69.48  Aligned_cols=46  Identities=13%  Similarity=0.310  Sum_probs=41.5

Q ss_pred             CcCcHHHHHHHHHhcCCChHHHHHHhhcchhHHHHHHH--hhhHHHHHhh
Q 025767           20 GHLSEDVIFLVFQHMNWNPKTIAALSCTCKWFDDLAKR--VLWKEFCRTR   67 (248)
Q Consensus        20 g~L~EdvL~~VF~~lnwdPr~lar~AcVcr~f~~lar~--vlWr~~C~~r   67 (248)
                      ..||+||+..||+.|+  |++|++++.|||+|+.++..  .+||..|.+.
T Consensus         7 ~~LP~Ell~~I~s~Ld--~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQ--FEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             HHSCHHHHHHHHTTSC--HHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             hhCCHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            4699999999999995  99999999999999998864  7999999764