Citrus Sinensis ID: 025781

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MEATNNITISSCCDDNKGLLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRQQAATAAATQQESHDEDQRSSSSTSSLSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDNDDDDDDDDDEDDDDHEINNNQRGPLIVKLFGVRFEVDEGERERKRKRES
ccccccccccccccccccHHHccccccccHHHHHHHHHHccccccccEEEccccccEEEEccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccEEEcccccccccHHHHHcccccccccHHHHHHHHHHHccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHccc
cccccccccccccccccccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccHcccHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccccccccHHHEcEEEEEcccccHHHcccccc
meatnnitissccddnkglleyarkstpppfllktymliedpatdnviswngdgtgfvvwqpaefardllptlfkhsnfsSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRQQAATAAATqqeshdedqrsssstsslseYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYAnmdndddddddddeddddheinnnqrgplIVKLFGVrfevdegerERKRKRES
meatnnitissccddnKGLLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRQQAATaaatqqeshdedqrsssstsslseyntlrdenkrlkkengnlsselvSMKRKCKELLDLVTKYANMDNDDDDDDDDDEDDDDHeinnnqrgplivklfgvrfevdegererkrkres
MEATNNITISSCCDDNKGLLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRqqaataaatqqESHDEDQRsssstsslsEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMdndddddddddeddddHEINNNQRGPLIVKLFGVRFEVDegererkrkreS
******ITISSCCDDNKGLLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWA*************************************************************ELLDLVT********************************************************
*******************************LLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLC*****************************************************ENGNLSSELVSMKRKCKELLDLVTKYA*****************************************************
MEATNNITISSCCDDNKGLLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK************************************TLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMDNDD*************EINNNQRGPLIVKLFGVRFEV*************
*************************STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRR*****************************TSSLSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKYANMD***********************GPLIVKLFGVRFEVD************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEATNNITISSCCDDNKGLLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRQQAATAAATQQESHDEDQRSSSSTSSLSExxxxxxxxxxxxxxxxxxxxxxxxxxxxCKELLDLVTKYANMDNDDDDDDDDDEDDDDHEINNNQRGPLIVKLFGVRFEVDEGERERKRKRES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query248 2.2.26 [Sep-21-2011]
O22230244 Heat stress transcription yes no 0.689 0.700 0.602 9e-57
P22335301 Heat shock factor protein N/A no 0.717 0.591 0.482 6e-47
Q6Z9C8390 Heat stress transcription yes no 0.697 0.443 0.441 6e-43
Q652B0 454 Heat stress transcription no no 0.697 0.381 0.433 2e-42
Q7XRX3305 Heat stress transcription no no 0.669 0.544 0.483 4e-42
Q67TP9302 Heat stress transcription no no 0.883 0.725 0.387 2e-40
Q96320284 Heat stress transcription no no 0.693 0.605 0.491 3e-40
Q9C635348 Heat stress transcription no no 0.713 0.508 0.4 4e-40
Q9SCW4299 Heat stress transcription no no 0.721 0.598 0.425 1e-39
Q9T0D3377 Heat stress transcription no no 0.399 0.262 0.686 2e-36
>sp|O22230|HSFB3_ARATH Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1 Back     alignment and function desciption
 Score =  220 bits (560), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 112/186 (60%), Positives = 131/186 (70%), Gaps = 15/186 (8%)

Query: 23  ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSF 82
           A    PPPFL+KTY ++EDP TD VISWN  GTGFVVWQPAEFARDLLPTLFKH NFSSF
Sbjct: 33  AELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSF 92

Query: 83  VRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA--W----ANRQQAATAAATQ 136
           VRQLNTYGFRKV T RWEF N+MFRKG+++L+  IRRRK+  W    +N Q   T     
Sbjct: 93  VRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQVVPTTTMVN 152

Query: 137 QESHD--------EDQRSSSSTSSLSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELL 188
           QE H         EDQ+SS+++SS   Y  L DENK LK EN  LS EL   K+KCK+L+
Sbjct: 153 QEGHQRIGIDHHHEDQQSSATSSSFV-YTALLDENKCLKNENELLSCELGKTKKKCKQLM 211

Query: 189 DLVTKY 194
           +LV +Y
Sbjct: 212 ELVERY 217
Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)
>sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z9C8|HFB2B_ORYSJ Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1 Back     alignment and function description
>sp|Q652B0|HFB2C_ORYSJ Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1 Back     alignment and function description
>sp|Q7XRX3|HFB2A_ORYSJ Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2 Back     alignment and function description
>sp|Q67TP9|HSFB1_ORYSJ Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1 Back     alignment and function description
>sp|Q96320|HSFB1_ARATH Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2 Back     alignment and function description
>sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1 Back     alignment and function description
>sp|Q9SCW4|HFB2A_ARATH Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1 Back     alignment and function description
>sp|Q9T0D3|HFB2B_ARATH Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
224139876228 predicted protein [Populus trichocarpa] 0.846 0.921 0.693 2e-83
255577260248 Heat shock factor protein, putative [Ric 0.879 0.879 0.698 4e-81
224086976226 predicted protein [Populus trichocarpa] 0.846 0.929 0.695 4e-79
225441862242 PREDICTED: heat stress transcription fac 0.846 0.867 0.668 2e-74
356504777231 PREDICTED: heat stress transcription fac 0.838 0.900 0.658 4e-72
357509695233 Heat stress transcription factor B-3 [Me 0.842 0.896 0.634 5e-72
356572024233 PREDICTED: heat stress transcription fac 0.842 0.896 0.658 5e-71
302398883215 HSF domain class transcription factor [M 0.770 0.888 0.669 3e-66
449438018252 PREDICTED: heat stress transcription fac 0.911 0.896 0.54 7e-63
255647028171 unknown [Glycine max] 0.669 0.970 0.748 1e-62
>gi|224139876|ref|XP_002323320.1| predicted protein [Populus trichocarpa] gi|222867950|gb|EEF05081.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/232 (69%), Positives = 185/232 (79%), Gaps = 22/232 (9%)

Query: 15  DNKGLLEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLF 74
           ++KGLLEY RKSTPPPFLLKTYML+EDPATD VISWN +GTGFVVWQPAEFARDLLPTLF
Sbjct: 3   NDKGLLEYVRKSTPPPFLLKTYMLVEDPATDEVISWNEEGTGFVVWQPAEFARDLLPTLF 62

Query: 75  KHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRQQAATAAA 134
           KHSNFSSFVRQLNTYGFRKVATSRWEFCN MFRKGE++LLC+IRRRKAW+++QQ      
Sbjct: 63  KHSNFSSFVRQLNTYGFRKVATSRWEFCNDMFRKGERELLCQIRRRKAWSSKQQPIAPIQ 122

Query: 135 TQQESHDEDQRSSSSTSSLSEYNTLRDENKRLKKENGNLSSELVSMKRKCKELLDLVTKY 194
              +  +EDQRSSS++SS SEY TL DENKRLKKENG LS+EL SMKRKCKELLDLV KY
Sbjct: 123 VTTQEFEEDQRSSSTSSS-SEYTTLVDENKRLKKENGVLSTELTSMKRKCKELLDLVAKY 181

Query: 195 ANMDNDDDDDDDDDEDDDDHEINNNQRGPLIVKLFGVRFEVDEGERERKRKR 246
           A+++ +++D+                      KLFGVR E +E +RERKRKR
Sbjct: 182 AHLEKEEEDERP--------------------KLFGVRLEAEE-DRERKRKR 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255577260|ref|XP_002529512.1| Heat shock factor protein, putative [Ricinus communis] gi|223531028|gb|EEF32881.1| Heat shock factor protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224086976|ref|XP_002308023.1| predicted protein [Populus trichocarpa] gi|222853999|gb|EEE91546.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225441862|ref|XP_002284216.1| PREDICTED: heat stress transcription factor B-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504777|ref|XP_003521171.1| PREDICTED: heat stress transcription factor B-3-like [Glycine max] Back     alignment and taxonomy information
>gi|357509695|ref|XP_003625136.1| Heat stress transcription factor B-3 [Medicago truncatula] gi|355500151|gb|AES81354.1| Heat stress transcription factor B-3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356572024|ref|XP_003554170.1| PREDICTED: heat stress transcription factor B-3-like [Glycine max] Back     alignment and taxonomy information
>gi|302398883|gb|ADL36736.1| HSF domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449438018|ref|XP_004136787.1| PREDICTED: heat stress transcription factor B-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255647028|gb|ACU23982.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
TAIR|locus:2062698244 HSFB3 "AT2G41690" [Arabidopsis 0.689 0.700 0.564 1.8e-48
TAIR|locus:2825726348 HSFB4 "AT1G46264" [Arabidopsis 0.415 0.295 0.660 1.1e-40
TAIR|locus:2139792377 AT-HSFB2B [Arabidopsis thalian 0.399 0.262 0.686 1.3e-38
TAIR|locus:2115015284 HSF4 "AT4G36990" [Arabidopsis 0.685 0.598 0.469 3.4e-38
TAIR|locus:2174043299 HSFB2A "AT5G62020" [Arabidopsi 0.399 0.331 0.626 9.3e-38
TAIR|locus:2005495 495 HSF1 "AT4G17750" [Arabidopsis 0.637 0.319 0.455 9.5e-34
TAIR|locus:2094339 406 HSFA6B "AT3G22830" [Arabidopsi 0.653 0.399 0.444 1.6e-32
TAIR|locus:2057371345 HSFA2 "AT2G26150" [Arabidopsis 0.411 0.295 0.568 5.5e-32
TAIR|locus:2028326 485 HSFA1D "AT1G32330" [Arabidopsi 0.616 0.315 0.443 7.7e-32
TAIR|locus:2170832282 HSFA6A "AT5G43840" [Arabidopsi 0.391 0.343 0.591 1.8e-31
TAIR|locus:2062698 HSFB3 "AT2G41690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 105/186 (56%), Positives = 121/186 (65%)

Query:    23 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSF 82
             A    PPPFL+KTY ++EDP TD VISWN  GTGFVVWQPAEFARDLLPTLFKH NFSSF
Sbjct:    33 AELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSF 92

Query:    83 VRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA--WA----NRXXXXXXXXXX 136
             VRQLNTYGFRKV T RWEF N+MFRKG+++L+  IRRRK+  W+    N           
Sbjct:    93 VRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQVVPTTTMVN 152

Query:   137 XESHD--------EDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRKCKELL 188
              E H         EDQ+          Y  L DENK LK EN  LS EL   K+KCK+L+
Sbjct:   153 QEGHQRIGIDHHHEDQQSSATSSSFV-YTALLDENKCLKNENELLSCELGKTKKKCKQLM 211

Query:   189 DLVTKY 194
             +LV +Y
Sbjct:   212 ELVERY 217
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0009407 "toxin catabolic process" evidence=RCA
TAIR|locus:2825726 HSFB4 "AT1G46264" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139792 AT-HSFB2B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115015 HSF4 "AT4G36990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174043 HSFB2A "AT5G62020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170832 HSFA6A "AT5G43840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22230HSFB3_ARATHNo assigned EC number0.60210.68950.7008yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00160499
hypothetical protein (228 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
pfam0044796 pfam00447, HSF_DNA-bind, HSF-type DNA-binding 6e-48
smart00415105 smart00415, HSF, heat shock factor 4e-42
COG5169282 COG5169, HSF1, Heat shock transcription factor [Tr 1e-26
>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding Back     alignment and domain information 
 Score =  153 bits (389), Expect = 6e-48
 Identities = 54/94 (57%), Positives = 71/94 (75%), Gaps = 2/94 (2%)

Query: 30  PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTY 89
           PFL K Y ++EDP+ D++ISW+ DG  F++W P EFA+ +LP  FKH+NFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 90  GFRKVATSR--WEFCNQMFRKGEKDLLCKIRRRK 121
           GF KV   R  WEF +  F++G+K+LL KI+RRK
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRK 94

Length = 96
>gnl|CDD|214654 smart00415, HSF, heat shock factor Back     alignment and domain information
>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 248
KOG0627304 consensus Heat shock transcription factor [Transcr 100.0
smart00415105 HSF heat shock factor. 100.0
PF00447103 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0 100.0
COG5169282 HSF1 Heat shock transcription factor [Transcriptio 100.0
PF0017885 Ets: Ets-domain; InterPro: IPR000418 Transcription 96.58
smart0041387 ETS erythroblast transformation specific domain. v 95.61
KOG3806177 consensus Predicted transcription factor [Transcri 92.61
KOG4196135 consensus bZIP transcription factor MafK [Transcri 88.25
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 83.68
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 82.68
smart0033865 BRLZ basic region leucin zipper. 82.62
>KOG0627 consensus Heat shock transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-40  Score=302.64  Aligned_cols=161  Identities=45%  Similarity=0.749  Sum_probs=129.5

Q ss_pred             cCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeec--CCcceee
Q 025781           25 KSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA--TSRWEFC  102 (248)
Q Consensus        25 ~~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~--~~~~eF~  102 (248)
                      .+.+++|+.|||.||+||++++||+|+++|.+|||||+.+|++.+||+||||+||+|||||||+||||||.  ++.|||+
T Consensus         9 ~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~   88 (304)
T KOG0627|consen    9 ASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFS   88 (304)
T ss_pred             cCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeec
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             cCCccCCchhhhhcccccCCcccchhh-hhhhcccCCCccccccccCCcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025781          103 NQMFRKGEKDLLCKIRRRKAWANRQQA-ATAAATQQESHDEDQRSSSSTSSLSEYNTLRDENKRLKKENGNLSSELVSMK  181 (248)
Q Consensus       103 h~~F~rg~~~lL~~IkRk~~~~~~~~~-~~~~~~~~~s~~~~q~~s~~~~~~~~~~~L~~e~~~LkkEn~~L~~El~~lr  181 (248)
                      |++|+||+++||++|+||++....... ..+....       ...............+..+...|++++..|+.|+.+|+
T Consensus        89 n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr  161 (304)
T KOG0627|consen   89 NPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFE-------RQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELR  161 (304)
T ss_pred             ChhHhcChHHHHHHHhhhccccCCcccccCcchhh-------hhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998665431 0000000       00000011122345677888999999999999999998


Q ss_pred             HHHHHHHHHHH
Q 025781          182 RKCKELLDLVT  192 (248)
Q Consensus       182 ~k~~~l~~~vs  192 (248)
                      +..+.+-..+.
T Consensus       162 ~~~~~~~~~~~  172 (304)
T KOG0627|consen  162 QQQDALRATIQ  172 (304)
T ss_pred             hhHHHHHHHHH
Confidence            66555444444

>smart00415 HSF heat shock factor Back     alignment and domain information
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs [] Back     alignment and domain information
>COG5169 HSF1 Heat shock transcription factor [Transcription] Back     alignment and domain information
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription [] Back     alignment and domain information
>smart00413 ETS erythroblast transformation specific domain Back     alignment and domain information
>KOG3806 consensus Predicted transcription factor [Transcription] Back     alignment and domain information
>KOG4196 consensus bZIP transcription factor MafK [Transcription] Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
2ldu_A125 Solution Nmr Structure Of Heat Shock Factor Protein 3e-17
1hks_A106 Solution Structure Of The Dna-Binding Domain Of Dro 8e-16
3hts_B102 Heat Shock Transcription FactorDNA COMPLEX Length = 1e-12
1fym_A92 Serendipitous Crystal Structure Containing The Heat 2e-12
1fbu_A90 Heat Shock Transcription Factor Dna Binding Domain 2e-12
1fyk_A92 Serendipitous Crystal Structure Containing The Heat 5e-12
1fbs_A90 Heat Shock Transcription Factor Dna Binding Domain 1e-11
1fbq_A90 Heat Shock Transcription Factor Dna Binding Domain 1e-11
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125 Back     alignment and structure 
Iteration: 1

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 23  ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSF 82
           A  S  P FL K + L+ DP TD +I W+  G  F V+   +FA+++LP  FKH+N +SF
Sbjct: 12  AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 83  VRQLNTYGFRKVATSRW-----------EFCNQMFRKGEKDLLCKIRRR 120
           VRQLN YGFRKV                EF +  F +G++ LL  I+R+
Sbjct: 72  VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106 Back     alignment and structure
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102 Back     alignment and structure
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92 Back     alignment and structure
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90 Back     alignment and structure
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92 Back     alignment and structure
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90 Back     alignment and structure
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
1hks_A106 Heat-shock transcription factor; transcription reg 8e-50
2ldu_A125 Heat shock factor protein 1; structural genomics, 2e-48
3hts_B102 Heat shock transcription factor; transcription reg 1e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106 Back     alignment and structure
 Score =  157 bits (400), Expect = 8e-50
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 26  STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQ 85
           S  P FL K + L++D  T+ +I W  DG  FV+   A+FA++LLP  +KH+N +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 86  LNTYGFRKVATS----------RWEFCNQMFRKGEKDLLCKIRRR 120
           LN YGF K+ +             EF +  F++    LL +I+R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
1hks_A106 Heat-shock transcription factor; transcription reg 100.0
2ldu_A125 Heat shock factor protein 1; structural genomics, 100.0
3hts_B102 Heat shock transcription factor; transcription reg 100.0
1gvj_A146 C-ETS-1 protein, P54; transcription, autoinhibitio 94.45
1awc_A110 Protein (GA binding protein alpha); complex (trans 93.87
1bc8_C93 SAP-1, protein (SAP-1 ETS domain); DNA-binding dom 93.6
2nny_A171 C-ETS-1 protein, P54; protein-DNA complex, transcr 93.5
1fli_A98 FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: 93.36
4avp_A106 ETS translocation variant 1; transcription, transc 93.0
2ypr_A102 Protein FEV; transcription; 2.64A {Homo sapiens} P 92.89
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 91.1
2dao_A118 Transcription factor ETV6; ETS domain, structural 90.53
1wwx_A107 E74-like factor 5 ESE-2B; DNA binding, transcripti 90.39
3jtg_A103 ETS-related transcription factor ELF-3; ELF3, prot 89.3
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 88.14
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 88.07
1yo5_C97 SAM pointed domain containing ETS transcription fa 88.04
1hbx_G157 ETS-domain protein ELK-4; gene regulation, transcr 87.82
1deb_A54 APC protein, adenomatous polyposis coli protein; c 87.19
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 87.18
1pue_E89 Protein (transcription factor PU.1 (TF PU.1)); com 86.91
3m48_A33 General control protein GCN4; leucine zipper, synt 86.26
2lf8_A128 Transcription factor ETV6; auto-inhibition; NMR {M 85.79
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 84.94
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 83.79
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 83.07
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 82.63
1uo4_A34 General control protein GCN4; four helix bundle, c 82.41
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 81.94
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 81.91
1t6f_A37 Geminin; coiled-coil, cell cycle; 1.47A {Synthetic 81.66
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 80.78
2wt7_B90 Transcription factor MAFB; transcription, transcri 80.51
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Back     alignment and structure
Probab=100.00  E-value=5.9e-42  Score=269.78  Aligned_cols=95  Identities=42%  Similarity=0.812  Sum_probs=91.2

Q ss_pred             CCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeec----------
Q 025781           26 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA----------   95 (248)
Q Consensus        26 ~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~----------   95 (248)
                      +.+|+||.|||+||+||++++||+|+++|++|||+|+.+|+++|||+||+|+||+|||||||+|||+|+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4678999999999999999999999999999999999999999999999999999999999999999986          


Q ss_pred             CCcceeecCCccCCchhhhhccccc
Q 025781           96 TSRWEFCNQMFRKGEKDLLCKIRRR  120 (248)
Q Consensus        96 ~~~~eF~h~~F~rg~~~lL~~IkRk  120 (248)
                      ++.|+|+||+|+||+|+||..|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            3679999999999999999999996
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Back     alignment and structure
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Back     alignment and structure
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Back     alignment and structure
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Back     alignment and structure
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A Back     alignment and structure
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus} Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1 Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 248
d1hksa_106 a.4.5.22 (A:) Heat-shock transcription factor {Dro 1e-38
d2htsa_92 a.4.5.22 (A:) Heat-shock transcription factor {Mil 1e-31
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  128 bits (323), Expect = 1e-38
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 26  STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQ 85
           S  P FL K + L++D  T+ +I W  DG  FV+   A+FA++LLP  +KH+N +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 86  LNTYGFRKVATS----------RWEFCNQMFRKGEKDLLCKIRRR 120
           LN YGF K+ +             EF +  F++    LL +I+R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
d1hksa_106 Heat-shock transcription factor {Drosophila melano 100.0
d2htsa_92 Heat-shock transcription factor {Milk yeast (Kluyv 99.97
d1pp7u_114 39 kda initiator binding protein, IBP39, N-termina 95.86
d1awca_110 GA binding protein (GABP) alpha {Mouse (Mus muscul 94.83
d1gvja_142 ETS-1 transcription factor, residues 331-440 {Huma 94.65
d1flia_98 Fli-1 {Human (Homo sapiens) [TaxId: 9606]} 94.58
d1duxc_86 Elk-1 {Human (Homo sapiens) [TaxId: 9606]} 94.1
d1hbxg_155 Serum response factor accessory protein 1a, SAP-1 91.9
d1puee_88 Transcription factor PU.1, residues 171-259 {Mouse 91.02
d1wwxa194 E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta 89.22
d1yo5c188 Sam pointed domain containing ets transcription SP 86.86
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=9.8e-39  Score=249.36  Aligned_cols=95  Identities=42%  Similarity=0.818  Sum_probs=90.1

Q ss_pred             CCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCchhhhhhhccCCCCCCChhhHHhhhccccceeecC---------
Q 025781           26 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVAT---------   96 (248)
Q Consensus        26 ~~~~~Fl~KL~~ml~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~---------   96 (248)
                      +++|+||.|||+||+||++++||+|+++|++|+|+|+.+|+++|||+||+|++|+||+||||+|||+|+..         
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999853         


Q ss_pred             -CcceeecCCccCCchhhhhccccc
Q 025781           97 -SRWEFCNQMFRKGEKDLLCKIRRR  120 (248)
Q Consensus        97 -~~~eF~h~~F~rg~~~lL~~IkRk  120 (248)
                       +.++|+||+|+||+|+||..|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence             468899999999999999999986
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]} Back     information, alignment and structure
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure