Citrus Sinensis ID: 025798

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MTRKQHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGKVDDSSAMSLMNNIKNAVVFAHAIAAVIFLL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHccHHHHHHHHHccccccEEEEccccHHHHcccccccccccHHHHHHHcccccccccccHHHHHHccccccccccccccccccEEEEEcccEEEEEccccEEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccccEEEEccccHHHHHccccccccccHHHHHHHHHHcccccEccHHHccccccccEEEccccccccEEEEEEEcccEEEEEccEEEEEEEEEEEccccEEEEEEccEEccHHHcccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MTRKQHFFAFSLVLLFLLHCTNtvvaqpaaapapgppgptnVTKVLEKAGQFTLFIRLLKATSVADQIDHqlndtnngmtlfaptdnafsslssgtlnslndQEKVALIQFHVIptyvslsqfqtvsnplrtnagdssrfeyplnvttfgnsvnissgitntsvsgtvytdgqlavYQVDKvllpwdlfgakppapapapekpkkkkadavadgpdgkvddssAMSLMNNIKNAVVFAHAIAAVIFLL
Flexible Loop (DISEMBL)
MTRKQHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPPapapapekpkkkkadavadgpdgkvDDSSAMSLMNNIKNAVVFAHAIAAVIFLL
Low Complexity Region (SEG)
MTRKQHffafslvllfllHCTNTVVAQpaaapapgppgpTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFsslssgtlnslnDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGakppapapapekpkkkkadavadgpdgkvddSSAMSLMNNIKNavvfahaiaavifLL
Disordered region (IsUnstruct)
*****HFFAFSLVLLFLLHCTNTVVAQ**************VTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAP****************NDQEKVALIQFHVIPTYVSLSQFQTVSNPLRT*****SRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG*************************************MNNIKNAVVFAHAIAAVIFL*
Disordered Region (DISOPRED)
******F**FSLVLLFLLHCTN*******************VTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQF**********AGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPW*******************************************NIKNAVVFAHAIAAVIFLL
Disordered Region (DISEMBL)
MTRKQHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPP*************************DDSSAMSLMNNIKNAVVFAHAIAAVIFLL
Disordered Region (DISPRO)
**RKQHFFAFSLVLLFLLHCTNTVV*************PTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAK*********************************SLMNNIKNAVVFAHAIAAVIFLL
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRKQHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGKVDDSSAMSLMNNIKNAVVFAHAIAAVIFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q8LEJ6	246	Fasciclin-like arabinogal	yes	no	0.766	0.772	0.612	2e-63
Q8LEE9	249	Fasciclin-like arabinogal	no	no	0.604	0.602	0.7	3e-57
Q9FFH6	247	Fasciclin-like arabinogal	no	no	0.709	0.712	0.446	2e-35
Q9ZWA8	247	Fasciclin-like arabinogal	no	no	0.681	0.684	0.465	3e-35
Q9SIL7	247	Fasciclin-like arabinogal	no	no	0.935	0.939	0.413	4e-35
Q9SJ81	254	Fasciclin-like arabinogal	no	no	0.588	0.574	0.381	3e-20
Q9LZX4	422	Fasciclin-like arabinogal	no	no	0.665	0.390	0.345	6e-18
Q9SNC3	420	Fasciclin-like arabinogal	no	no	0.733	0.433	0.305	3e-16
O22126	420	Fasciclin-like arabinogal	no	no	0.649	0.383	0.305	1e-12
Q9SU13	403	Fasciclin-like arabinogal	no	no	0.842	0.518	0.267	5e-12

>sp|Q8LEJ6|FLA11_ARATH Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/196 (61%), Positives = 154/196 (78%), Gaps = 6/196 (3%)

Query: 8   FAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQ 67
           F FS + +F L    T       APAPGP GPTN+T +LEKAGQFTLFIRLLK+T  +DQ
Sbjct: 7   FIFSNLFIFFLVIATTY----GQAPAPGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQ 62

Query: 68  IDHQLNDTN-NGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTV 126
           I+ QLN ++ NG+T+FAPTDNAF+SL SGTLNSL+DQ+KV L+QFHV+PT +++ QFQTV
Sbjct: 63  INTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTV 122

Query: 127 SNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPW 186
           SNPLRT AGD    ++PLN+T+ GN VNI++G+ + +V+ +VY+D QLAVYQVD+VLLP 
Sbjct: 123 SNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPL 182

Query: 187 DLFGAKPPAPAPAPEK 202
            +FG+   APAPAPEK
Sbjct: 183 AMFGSS-VAPAPAPEK 197

May be a cell surface adhesion protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LEE9|FLA12_ARATH Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2

 Score =  221 bits (564), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/150 (70%), Positives = 133/150 (88%)

Query: 40  TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNS 99
           TNVTK+LEKAGQFT+FIRLLK+T VA+Q+  QLN+++NG+T+FAP+D++F+ L +GTLNS
Sbjct: 38  TNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNS 97

Query: 100 LNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGI 159
           L D+++V LIQFHVIP+YVS S FQT+SNPLRT AGDS+   +PLNVTT GN+VNI+SG+
Sbjct: 98  LTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGV 157

Query: 160 TNTSVSGTVYTDGQLAVYQVDKVLLPWDLF 189
           TNT+VSG VY+DGQLAVYQVDKVLLP  +F
Sbjct: 158 TNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH6|FLA13_ARATH Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 109/179 (60%), Gaps = 3/179 (1%)

Query: 41  NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL 100
           N+T +LEK GQF   IRLL  T + +QI+ Q+N ++ GMT+ APTDNAF +L  GTLN L
Sbjct: 36  NITAILEKGGQFVTLIRLLNTTQIGNQINIQINSSSEGMTVLAPTDNAFQNLKPGTLNKL 95

Query: 101 NDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNA-GDSSRFEYPLNVTTFGNSVNISSGI 159
           +  ++V LI +HV P + +L    +VSNP+RT A G      Y LN T  GN VN+S+G+
Sbjct: 96  SPDDQVKLILYHVSPKFYTLEDLLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVSTGV 155

Query: 160 TNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGK 218
             T +S ++  +  LAVY VD VLLP ++FG +  +P   P  PK K  D   D    K
Sbjct: 156 VETRLSTSLRQERPLAVYVVDMVLLPEEMFGERKISPMAPP--PKSKSPDVSDDSESSK 212

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA8|FLA9_ARATH Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/174 (46%), Positives = 107/174 (61%), Gaps = 5/174 (2%)

Query: 41  NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL 100
           N+T +LEK GQFT FI LL  T V  Q++ Q+N ++ GMT+FAPTDNAF +L  GTLN L
Sbjct: 39  NLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQL 98

Query: 101 NDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGIT 160
           +  ++V LI +HV P Y S+    +VSNP+RT A       Y LN T   N +N+S+G  
Sbjct: 99  SPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYV 158

Query: 161 NTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPPAP-APAPEKPKKKKADAVAD 213
            T +S ++     LAVY VD VLLP ++FG    +P APAP    K K+  V D
Sbjct: 159 ETRISNSLRQQRPLAVYVVDMVLLPGEMFGEHKLSPIAPAP----KSKSGGVTD 208

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL7|FLA6_ARATH Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV=2

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/242 (41%), Positives = 134/242 (55%), Gaps = 10/242 (4%)

Query: 12  LVLLFLLHCTNTVVAQPAAAPAPG-PPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDH 70
           +VLL  L     + +QP A PAP     P N+T +LE   QFT  I+LL  T V  Q+  
Sbjct: 9   VVLLIFLFTIPYIQSQPTA-PAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQVGFQVSV 67

Query: 71  QLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPL 130
           QLN ++ GMT+FAPTDNAF+ L  GTLNSL  Q+++ L+ +H+IP Y SLS     SNP+
Sbjct: 68  QLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLLASNPV 127

Query: 131 RTNAGDSSRFEYPLNVT--TFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDL 188
           RT A       + LN T     N VN+S+G+  T ++  +     LAVY VD VLLP +L
Sbjct: 128 RTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEEL 187

Query: 189 FGAK-PPAPAPAPEKPKKKKADAVADGPDGKVDDSSAMSLMNNIKNAVV--FAHAIAAVI 245
           FG K  P  APA   PK   + + AD P    +  SA S +      +V  FA    +VI
Sbjct: 188 FGTKTTPTGAPA---PKSSTSSSDADSPAADDEHKSAGSSVKRTSLGIVVSFALFCCSVI 244

Query: 246 FL 247
           ++
Sbjct: 245 YI 246

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ81|FLA7_ARATH Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 6/152 (3%)

Query: 41  NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL 100
           N+T++L  AG F  F+  L +T V +   +Q N+T  G+T+F P D+AF +  +  L++L
Sbjct: 46  NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNL 105

Query: 101 NDQEKVALIQFHVIPTYVSLSQFQTVSN--PLRTNAGDSSRFEYPLNVTTFGNSVNISSG 158
              +   L+ FH +P Y SLS+F+ +S   P+ T AG     +Y L  T    +V I S 
Sbjct: 106 TKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGG----QYSLKFTDVSGTVRIDSL 161

Query: 159 ITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
            T T VS +V++   +AVYQV++VLLP  +FG
Sbjct: 162 WTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFG 193

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZX4|FLA10_ARATH Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 6/171 (3%)

Query: 31  APAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFS 90
           APAP   G +N+T +LEKAG  T F  LL ++ V    +  +     G+T+FAP+D AF 
Sbjct: 180 APAPSSAGVSNITGLLEKAGCKT-FANLLVSSGVIKTFESTVE---KGLTVFAPSDEAFK 235

Query: 91  SLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFG 150
           +     L +L   E V+L+++H +  Y      +T  + + T A + +  +Y L  +T G
Sbjct: 236 ARGVPDLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAG-KYDLTTSTSG 294

Query: 151 NSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPPAPAPAPE 201
           + V + +G+  + ++ TV  +  + ++ VD VLLP +LFG K  +PAPAPE
Sbjct: 295 DEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFG-KSSSPAPAPE 344

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNC3|FLA4_ARATH Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 8/190 (4%)

Query: 18  LHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNN 77
           +  + T+   P +     PP   N+T++L     F + + LL A+ V  + ++  ++   
Sbjct: 184 ITASETLTPPPTSTSLSPPPAGINLTQILINGHNFNVALSLLVASGVITEFEN--DERGA 241

Query: 78  GMTLFAPTDNAFSSLSSGT-LNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAG- 135
           G+T+F PTD+AFS L S   L SL  ++K  +++FHV+ +Y +L   ++++NP++     
Sbjct: 242 GITVFVPTDSAFSDLPSNVNLQSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLAT 301

Query: 136 -DSSRFEYPLNVTTF-GNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLF--GA 191
            +     Y LN++   G+ V I+SG+    V+ T +    ++V+ V KVLLP +LF    
Sbjct: 302 EEMGAGSYTLNISRVNGSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELFPKSG 361

Query: 192 KPPAPAPAPE 201
           +P A AP  E
Sbjct: 362 QPVATAPPQE 371

May be a cell surface adhesion protein that is required for normal cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|O22126|FLA8_ARATH Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 6/167 (3%)

Query: 25  VAQPAAAPAPGPPGP-TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFA 83
           +  P    AP P    +N+T +LEKAG  T F  LL ++ V    +  +     G+T+FA
Sbjct: 172 IIAPGVLTAPAPSASLSNITGLLEKAGCKT-FANLLVSSGVLKTYESAVE---KGLTVFA 227

Query: 84  PTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYP 143
           P+D AF +     L  L   E V+L+++H +  Y      +T  N + T A + +  ++ 
Sbjct: 228 PSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAG-KFD 286

Query: 144 LNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
           L  +T G+ V + +G+  + ++ TV     + ++ VD VLLP +LFG
Sbjct: 287 LTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFG 333

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU13|FLA2_ARATH Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 30/239 (12%)

Query: 17  LLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDT- 75
           +LH +  + +  A AP   P     +T +LEK G    F  +LK+T      D    DT 
Sbjct: 167 VLHISQVLTSPEAEAPTASPSDLI-LTTILEKQG-CKAFSDILKSTGA----DKTFQDTV 220

Query: 76  NNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAG 135
           + G+T+F P+D+A          SL+   K AL+ +H +P Y SL   ++ +  + T A 
Sbjct: 221 DGGLTVFCPSDSAVGKFMP-KFKSLSPANKTALVLYHGMPVYQSLQMLRSGNGAVNTLAT 279

Query: 136 DSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGA---- 191
           + +  ++   V   G  V + + +    V GT+     L VY++DKVLLP +++ A    
Sbjct: 280 EGNN-KFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIYKAVKTS 338

Query: 192 --------------KPPAPAPAPEKPKKKKADAVADGPDGKVDDSSAMSLMNNIKNAVV 236
                         +  A  P+ + P     + VAD  +G V  S+ ++  +N+  A+V
Sbjct: 339 APAPKSSKKKPKNAEADADGPSADAPSDDDVE-VADDKNGAV--SAMITRTSNVVTAIV 394

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
150416579	243	arabinogalactan protein 2 [Gossypium hir	0.959	0.979	0.634	2e-74
30841338	243	arabinogalactan protein [Gossypium hirsu	0.907	0.925	0.655	8e-70
47717925	238	fasciclin-like AGP 11 [Populus tremula x	0.854	0.890	0.570	5e-64
270271288	240	fasciclin and related adhesion glycoprot	0.955	0.987	0.618	1e-63
157273644	239	fasciclin-like arabinogalactan protein 5	0.919	0.953	0.551	2e-63
109150112	252	putative cell surface adhesion protein [	0.826	0.813	0.637	4e-63
224122602	240	predicted protein [Populus trichocarpa]	0.955	0.987	0.647	6e-63
297810387	246	hypothetical protein ARALYDRAFT_487087 [	0.790	0.796	0.591	4e-62
225435279	244	PREDICTED: fasciclin-like arabinogalacta	0.725	0.737	0.675	5e-62
255557028	241	conserved hypothetical protein [Ricinus	0.947	0.975	0.524	6e-62

>gi|150416579|gb|ABR68797.1| arabinogalactan protein 2 [Gossypium hirsutum] gi|157273636|gb|ABV27472.1| fasciclin-like arabinogalactan protein 1 [Gossypium hirsutum]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/241 (63%), Positives = 189/241 (78%), Gaps = 3/241 (1%)

Query: 3   RKQHFFA-FSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKA 61
           R+Q+ F   +L++LF L C+ T+   PA APAP   GPTNVTK+LEKAGQFTLFIRLLK+
Sbjct: 2   RQQYVFTTLTLLILFSLSCSTTLAQSPALAPAPS--GPTNVTKILEKAGQFTLFIRLLKS 59

Query: 62  TSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLS 121
           T VA+Q+  QLN++NNGMT+FAPTDNAFSSL SGTLNSL D++KV L+QFH++PTY++ S
Sbjct: 60  TQVANQLLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSLTDEQKVQLVQFHIVPTYLTSS 119

Query: 122 QFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDK 181
           QFQT+SNPLRT AGDS   ++PLNVTT GNSVNI++G+TNTSVSGT+YTDGQLAVYQ+D+
Sbjct: 120 QFQTISNPLRTQAGDSGDGKFPLNVTTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQIDQ 179

Query: 182 VLLPWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGKVDDSSAMSLMNNIKNAVVFAHAI 241
           VL P  +F  +PPAPAPAP K K KKA  VAD PD    D+S  + + N+    V A  I
Sbjct: 180 VLQPLQIFAPRPPAPAPAPAKSKNKKATTVADSPDVTPADNSKAATLQNVGLFGVAALVI 239

Query: 242 A 242
           A
Sbjct: 240 A 240

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30841338|gb|AAO92753.1| arabinogalactan protein [Gossypium hirsutum]

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 150/229 (65%), Positives = 185/229 (80%), Gaps = 4/229 (1%)

Query: 3   RKQHFFA-FSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKA 61
           R+Q+ F   +L++LF L C+ T+   PA APAP   GPTNVTK+LEKAGQFTLFIRLLK+
Sbjct: 2   RQQYVFTTLTLLILFSLSCSTTLAQAPALAPAP--SGPTNVTKILEKAGQFTLFIRLLKS 59

Query: 62  TSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLS 121
           T VA+Q+  QLN++NNGMT+FAPTDNAFSSL SGTLNSL D++KV L+QFH++PTY++ S
Sbjct: 60  TQVANQLLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSLTDEQKVELVQFHIVPTYLTSS 119

Query: 122 QFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDK 181
           QFQT+SNPLRT AGDS   ++PLN+TT GNSVNI++G+TNTSVSGT+YTDGQLAVYQ+D+
Sbjct: 120 QFQTISNPLRTQAGDSGDGKFPLNITTSGNSVNITTGLTNTSVSGTIYTDGQLAVYQIDQ 179

Query: 182 VLLPWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGK-VDDSSAMSLMN 229
           VL P  +F  +PPAPAPAP K K KKA  VAD PD    D+S A +L N
Sbjct: 180 VLQPLQIFAPRPPAPAPAPAKSKNKKATTVADSPDVTPADNSKAATLQN 228

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47717925|gb|AAT37954.1| fasciclin-like AGP 11 [Populus tremula x Populus alba]

 Score =  250 bits (638), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 164/221 (74%), Gaps = 9/221 (4%)

Query: 3   RKQHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKAT 62
           RKQ   +  +  L L   ++T  AQ    P+P P GPTN+T +L KAGQFT  IRLLK+T
Sbjct: 2   RKQLLISPFVPFLMLFLYSSTAFAQ---TPSPAPSGPTNITAILAKAGQFTTLIRLLKST 58

Query: 63  SVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQ 122
             ADQI+ QLN++N G+T+FAPTDN+F++L +GTLNSL+DQ+KV L+QFH++P ++S+S 
Sbjct: 59  QEADQINTQLNNSNQGLTVFAPTDNSFANLKAGTLNSLSDQQKVQLVQFHILPNFLSMSN 118

Query: 123 FQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKV 182
           FQTVSNPLRT AG+S+  E+PLNVTT GN VNI++G+   +V+ T+YTDGQL VYQVD+V
Sbjct: 119 FQTVSNPLRTQAGNSADGEFPLNVTTSGNQVNITTGVDTATVANTIYTDGQLVVYQVDQV 178

Query: 183 LLPWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGKVDDSS 223
           LLP DLFG    APAPAP KP+K   D  A  P G  +D+S
Sbjct: 179 LLPLDLFGT---APAPAPSKPEK---DVPAKAPAGSKEDAS 213

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270271288|gb|ACZ67174.1| fasciclin and related adhesion glycoprotein [Populus deltoides]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/244 (61%), Positives = 180/244 (73%), Gaps = 7/244 (2%)

Query: 5   QHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSV 64
           Q  F+ S +L FLLHC  T+ AQ + A AP PPGPTNVTKVLEK GQF++FIRLLKAT  
Sbjct: 4   QFLFSASFILFFLLHCPPTL-AQ-SPAAAPAPPGPTNVTKVLEKGGQFSVFIRLLKATQE 61

Query: 65  ADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQ 124
              ++ QLN+TNN +T+FAP+DNAFSSL SGTLNSL+DQEK  L+QFH+IP ++S SQFQ
Sbjct: 62  DVTLNGQLNNTNNAITIFAPSDNAFSSLKSGTLNSLSDQEKAELVQFHIIPQFLSSSQFQ 121

Query: 125 TVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLL 184
           TVSNPL T AG   R E  LNVTT GNSVNI++G+TNTSVSGT+YTD QLAVYQVDKVLL
Sbjct: 122 TVSNPLTTQAGSGGRLE--LNVTTTGNSVNITTGLTNTSVSGTIYTDNQLAVYQVDKVLL 179

Query: 185 PWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGKVDDSSAMSLMNNIKNAVVFAHAIAAV 244
           P D+F  KPP PAPAPEK KK+   A +  P+   D S A+S    + N V F   + A 
Sbjct: 180 PLDIFTPKPPTPAPAPEKSKKRSKAAAS--PESPADTSGAVSF-TVLNNVVXFGVCMVAA 236

Query: 245 IFLL 248
           I+ L
Sbjct: 237 IYSL 240

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157273644|gb|ABV27476.1| fasciclin-like arabinogalactan protein 5 [Gossypium hirsutum]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/243 (55%), Positives = 173/243 (71%), Gaps = 15/243 (6%)

Query: 4   KQHF---FAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLK 60
           KQH    FA S +L F LHC+ T    PA +PAP  PGP +VTK+L+KAGQ+++F+RLLK
Sbjct: 5   KQHLIPLFAISFLLFFQLHCSTTSAQAPAQSPAP--PGPPDVTKILQKAGQYSVFVRLLK 62

Query: 61  ATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSL 120
           +T V+D++  +L DT++G T+FAPTD AFS+L SG LNSLND+++V L+ FHVIP+Y+ L
Sbjct: 63  STQVSDRLIGELKDTDDGKTIFAPTDKAFSALKSGALNSLNDEQRVQLVLFHVIPSYIPL 122

Query: 121 SQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVD 180
           SQFQTVSNP+RT AGDS   E+PLNV + GN+V + +G+T TSVS T+YTDGQLAVY+VD
Sbjct: 123 SQFQTVSNPMRTQAGDSGDGEFPLNVPSSGNTVVLKTGLTKTSVSDTIYTDGQLAVYRVD 182

Query: 181 KVLLPWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGKVDDSSAMSL-MNNIKNAVVFAH 239
           +VL P  +F A+  A APAP    +K AD      DGK   S A SL M N+   VV   
Sbjct: 183 QVLQPLQVFAARSSALAPAPGM-SRKAADV-----DGK---SKASSLAMQNLALFVVSVI 233

Query: 240 AIA 242
           A A
Sbjct: 234 AFA 236

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109150112|emb|CAI99883.1| putative cell surface adhesion protein [Zinnia violacea]

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 137/215 (63%), Positives = 165/215 (76%), Gaps = 10/215 (4%)

Query: 24  VVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFA 83
           VVAQ   APAPGP GPTN+TK+LEKAGQFT  IRL+KAT + DQI+ QLN++N GMT+FA
Sbjct: 29  VVAQ---APAPGPSGPTNITKILEKAGQFTTLIRLMKATQLGDQINTQLNNSNQGMTVFA 85

Query: 84  PTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYP 143
           PTDNAFSSL  GTLNSL+DQ+KV+L+QFHV+PTY++ SQ QTVSNPLRT AGD++  ++P
Sbjct: 86  PTDNAFSSLKPGTLNSLSDQDKVSLLQFHVVPTYLTTSQLQTVSNPLRTQAGDTASNKFP 145

Query: 144 LNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPPAPAPAPEKP 203
           LNVT  GN VN+S+G+ +T VS ++YTDG LAVYQVDKVLLP  LFG   PAPAP P K 
Sbjct: 146 LNVTAAGNQVNVSTGVVDTPVSNSIYTDGTLAVYQVDKVLLPMSLFGTPAPAPAPEPLKK 205

Query: 204 KKKKADAVADGPDGKVDDSSAMSLMNNIKNAVVFA 238
           KK  A+   DG   K DD SA +   +   AVVF 
Sbjct: 206 KKSGAE---DGAPAK-DDGSASA---DASGAVVFG 233

Source: Zinnia violacea

Species: Zinnia violacea

Genus: Zinnia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122602|ref|XP_002318877.1| predicted protein [Populus trichocarpa] gi|118482997|gb|ABK93410.1| unknown [Populus trichocarpa] gi|222859550|gb|EEE97097.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 185/244 (75%), Gaps = 7/244 (2%)

Query: 5   QHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSV 64
           Q   +FSL+L FLLHC  T+ AQ + A APGPPGPTNVTK+LEK GQF++FIRLLKAT  
Sbjct: 4   QFLLSFSLILSFLLHCPPTL-AQ-SPAAAPGPPGPTNVTKILEKGGQFSVFIRLLKATQE 61

Query: 65  ADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQ 124
              ++ QLN+TNN +T+FAP+DNAFSSL SGTLNSLNDQEK  L+QFH+IP Y+S SQFQ
Sbjct: 62  DVTLNGQLNNTNNAITIFAPSDNAFSSLKSGTLNSLNDQEKAELVQFHIIPQYLSSSQFQ 121

Query: 125 TVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLL 184
           TVSNPL T AG   R E  LNVTT GNSVNI++G+TNTSVSGT+YTD QLAVYQVDKVLL
Sbjct: 122 TVSNPLTTQAGSGGRLE--LNVTTTGNSVNITTGLTNTSVSGTIYTDNQLAVYQVDKVLL 179

Query: 185 PWDLFGAKPPAPAPAPEKPKKKKADAVADGPDGKVDDSSAMSLMNNIKNAVVFAHAIAAV 244
           P D+F  KPP PAPAPEKPKK+     A+ PD   D+S A+SL   + + V F   I A 
Sbjct: 180 PVDIFTPKPPTPAPAPEKPKKRS--KAAESPDAPEDNSGAVSL-TVLNDVVFFGVGIVAA 236

Query: 245 IFLL 248
           IF L
Sbjct: 237 IFSL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810387|ref|XP_002873077.1| hypothetical protein ARALYDRAFT_487087 [Arabidopsis lyrata subsp. lyrata] gi|297318914|gb|EFH49336.1| hypothetical protein ARALYDRAFT_487087 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 157/203 (77%), Gaps = 7/203 (3%)

Query: 1   MTRKQHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLK 60
           M   + F + +L + FL+  T         APAPGP GPTN+T +LEKAGQFTLFIRLLK
Sbjct: 1   MATSRTFISSNLFIFFLIVATTN-----GQAPAPGPSGPTNITAILEKAGQFTLFIRLLK 55

Query: 61  ATSVADQIDHQLNDTN-NGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVS 119
           +T  +DQI+ QLN ++ NG+T+FAPTDNAF+SL SGTLNSL+DQ+KV L+QFHV+PT ++
Sbjct: 56  STQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLIT 115

Query: 120 LSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQV 179
           + QFQTVSNPLRT AGD    ++PLN+T+ GN VNI++G+ + +V+ +VY+D QLAVYQV
Sbjct: 116 MPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQV 175

Query: 180 DKVLLPWDLFGAKPPAPAPAPEK 202
           D+VLLP  +FG+   APAPAPEK
Sbjct: 176 DQVLLPLAMFGSS-AAPAPAPEK 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435279|ref|XP_002285068.1| PREDICTED: fasciclin-like arabinogalactan protein 11-like [Vitis vinifera]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/182 (67%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 25  VAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAP 84
           +AQP+ APAP   GPTN+T++LEKAGQ+T+ IRL+K T VADQI+ QLN++N G+T+FAP
Sbjct: 22  LAQPSQAPAPS--GPTNITQILEKAGQYTILIRLMKGTQVADQINTQLNNSNQGLTVFAP 79

Query: 85  TDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPL 144
           TDNAFS+L +GTLNSL DQ+KV LIQFHV+P ++S+SQFQTVSNPLRT AG+S+  E+PL
Sbjct: 80  TDNAFSTLKAGTLNSLTDQQKVQLIQFHVVPNFLSISQFQTVSNPLRTQAGNSNNGEFPL 139

Query: 145 NVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFGAKPPAPAPAPEKPK 204
           NVTT GN VN+S+GI + +V+ TVYTD QLAVYQVDKVLLP D+F    PA APAP K K
Sbjct: 140 NVTTSGNQVNVSTGIVDATVANTVYTDNQLAVYQVDKVLLPLDIFAPPSPAEAPAPAKSK 199

Query: 205 KK 206
           KK
Sbjct: 200 KK 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557028|ref|XP_002519547.1| conserved hypothetical protein [Ricinus communis] gi|223541410|gb|EEF42961.1| conserved hypothetical protein [Ricinus communis]

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/242 (52%), Positives = 168/242 (69%), Gaps = 7/242 (2%)

Query: 3   RKQHFFAFSLVLLFLLHCTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKAT 62
           R Q F +  L L+F+  C +T  AQ    P+P P GPTN+T +LEKAGQFT FI+L+ +T
Sbjct: 2   RNQLFSSIFLFLMFVFLCCSTSSAQ---TPSPSPSGPTNITAILEKAGQFTTFIKLMMST 58

Query: 63  SVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQ 122
             A QI+ QLN++N G+T+FAP DNAF++L +GTLNSL DQEKV L+QFH++PT++S+SQ
Sbjct: 59  QEASQINTQLNNSNQGLTVFAPPDNAFANLKAGTLNSLTDQEKVQLMQFHILPTFISMSQ 118

Query: 123 FQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKV 182
           FQTVSNPLRT AG+S+  E+PLNVTT GN VN+++G+   +V+ T+YTDG LAVYQVDKV
Sbjct: 119 FQTVSNPLRTQAGNSANGEFPLNVTTSGNQVNVTTGVDTATVANTIYTDGSLAVYQVDKV 178

Query: 183 LLPWDLFGAKPPAPAPA--PEKPKKKKADAVADGPDGKVDDSSAMSLMNNIKNAVVFAHA 240
           LLP DLF +          P+K  + KA A         D SSA + +  +  AV F  A
Sbjct: 179 LLPLDLFSSPAAPAPAPSEPKKVIQGKAPAATTADVTPADSSSATATV--VSFAVAFIAA 236

Query: 241 IA 242
           I+
Sbjct: 237 IS 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2175153	249	FLA12 "FASCICLIN-like arabinog	0.604	0.602	0.653	3.2e-49
TAIR|locus:2143443	246	FLA11 "FASCICLIN-like arabinog	0.608	0.613	0.585	3.4e-45
TAIR|locus:2024122	247	FLA9 "FASCICLIN-like arabinoog	0.604	0.607	0.44	7.1e-29
TAIR|locus:2167664	247	FLA13 "AT5G44130" [Arabidopsis	0.604	0.607	0.437	6.4e-28
TAIR|locus:2054769	247	FLA6 "FASCICLIN-like arabinoga	0.604	0.607	0.421	3.2e-26
TAIR|locus:2049218	254	FLA7 "FASCICLIN-like arabinoog	0.588	0.574	0.368	2.7e-20
TAIR|locus:2075185	420	SOS5 "salt overly sensitive 5"	0.592	0.35	0.287	5.6e-14
TAIR|locus:2101841	422	FLA10 "FASCICLIN-like arabinog	0.588	0.345	0.298	1.6e-13
TAIR|locus:2050822	420	FLA8 "FASCICLIN-like arabinoga	0.653	0.385	0.275	3.3e-13
TAIR|locus:2135818	403	FLA2 "FASCICLIN-like arabinoga	0.568	0.349	0.288	2.8e-11

TAIR|locus:2175153 FLA12 "FASCICLIN-like arabinogalactan-protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 98/150 (65%), Positives = 124/150 (82%)

Query:    40 TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFXXXXXXXXXX 99
             TNVTK+LEKAGQFT+FIRLLK+T VA+Q+  QLN+++NG+T+FAP+D++F          
Sbjct:    38 TNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNS 97

Query:   100 XXDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGI 159
               D+++V LIQFHVIP+YVS S FQT+SNPLRT AGDS+   +PLNVTT GN+VNI+SG+
Sbjct:    98 LTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGV 157

Query:   160 TNTSVSGTVYTDGQLAVYQVDKVLLPWDLF 189
             TNT+VSG VY+DGQLAVYQVDKVLLP  +F
Sbjct:   158 TNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2143443 FLA11 "FASCICLIN-like arabinogalactan-protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 89/152 (58%), Positives = 118/152 (77%)

Query:    40 TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTN-NGMTLFAPTDNAFXXXXXXXXX 98
             TN+T +LEKAGQFTLFIRLLK+T  +DQI+ QLN ++ NG+T+FAPTDNAF         
Sbjct:    35 TNITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLN 94

Query:    99 XXXDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSG 158
                DQ+KV L+QFHV+PT +++ QFQTVSNPLRT AGD    ++PLN+T+ GN VNI++G
Sbjct:    95 SLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTG 154

Query:   159 ITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
             + + +V+ +VY+D QLAVYQVD+VLLP  +FG
Sbjct:   155 VVSATVANSVYSDKQLAVYQVDQVLLPLAMFG 186

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2024122 FLA9 "FASCICLIN-like arabinoogalactan 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 66/150 (44%), Positives = 88/150 (58%)

Query:    41 NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFXXXXXXXXXXX 100
             N+T +LEK GQFT FI LL  T V  Q++ Q+N ++ GMT+FAPTDNAF           
Sbjct:    39 NLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQL 98

Query:   101 XDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGIT 160
                ++V LI +HV P Y S+    +VSNP+RT A       Y LN T   N +N+S+G  
Sbjct:    99 SPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYV 158

Query:   161 NTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
              T +S ++     LAVY VD VLLP ++FG
Sbjct:   159 ETRISNSLRQQRPLAVYVVDMVLLPGEMFG 188

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2167664 FLA13 "AT5G44130" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 66/151 (43%), Positives = 91/151 (60%)

Query:    41 NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFXXXXXXXXXXX 100
             N+T +LEK GQF   IRLL  T + +QI+ Q+N ++ GMT+ APTDNAF           
Sbjct:    36 NITAILEKGGQFVTLIRLLNTTQIGNQINIQINSSSEGMTVLAPTDNAFQNLKPGTLNKL 95

Query:   101 XDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNA-GDSSRFEYPLNVTTFGNSVNISSGI 159
                ++V LI +HV P + +L    +VSNP+RT A G      Y LN T  GN VN+S+G+
Sbjct:    96 SPDDQVKLILYHVSPKFYTLEDLLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVSTGV 155

Query:   160 TNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
               T +S ++  +  LAVY VD VLLP ++FG
Sbjct:   156 VETRLSTSLRQERPLAVYVVDMVLLPEEMFG 186

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2054769 FLA6 "FASCICLIN-like arabinogalactan 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 64/152 (42%), Positives = 86/152 (56%)

Query:    41 NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFXXXXXXXXXXX 100
             N+T +LE   QFT  I+LL  T V  Q+  QLN ++ GMT+FAPTDNAF           
Sbjct:    38 NLTAILEAGHQFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSL 97

Query:   101 XDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVT--TFGNSVNISSG 158
               Q+++ L+ +H+IP Y SLS     SNP+RT A       + LN T     N VN+S+G
Sbjct:    98 TYQQQIQLMLYHIIPKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTG 157

Query:   159 ITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
             +  T ++  +     LAVY VD VLLP +LFG
Sbjct:   158 VVETRINNALRQQFPLAVYVVDSVLLPEELFG 189

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2049218 FLA7 "FASCICLIN-like arabinoogalactan 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 56/152 (36%), Positives = 83/152 (54%)

Query:    41 NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFXXXXXXXXXXX 100
             N+T++L  AG F  F+  L +T V +   +Q N+T  G+T+F P D+AF           
Sbjct:    46 NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNL 105

Query:   101 XDQEKVALIQFHVIPTYVSLSQFQTVSN--PLRTNAGDSSRFEYPLNVTTFGNSVNISSG 158
                +   L+ FH +P Y SLS+F+ +S   P+ T AG     +Y L  T    +V I S 
Sbjct:   106 TKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGG----QYSLKFTDVSGTVRIDSL 161

Query:   159 ITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
              T T VS +V++   +AVYQV++VLLP  +FG
Sbjct:   162 WTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFG 193

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2075185 SOS5 "salt overly sensitive 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 44/153 (28%), Positives = 82/153 (53%)

Query:    41 NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFXXXXXXXXXXX 100
             N+T++L     F + + LL A+ V  + ++  ++   G+T+F PTD+AF           
Sbjct:   207 NLTQILINGHNFNVALSLLVASGVITEFEN--DERGAGITVFVPTDSAFSDLPSNVNLQS 264

Query:   101 XDQEKVALI-QFHVIPTYVSLSQFQTVSNPLRTNAG--DSSRFEYPLNVTTF-GNSVNIS 156
                E+ A + +FHV+ +Y +L   ++++NP++      +     Y LN++   G+ V I+
Sbjct:   265 LPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVNGSIVTIN 324

Query:   157 SGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLF 189
             SG+    V+ T +    ++V+ V KVLLP +LF
Sbjct:   325 SGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELF 357

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=ISS

GO:0009651 "response to salt stress" evidence=IMP

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2101841 FLA10 "FASCICLIN-like arabinogalactan-protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 45/151 (29%), Positives = 79/151 (52%)

Query:    40 TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFXXXXXXXXXX 99
             +N+T +LEKAG  T F  LL ++ V    +   +    G+T+FAP+D AF          
Sbjct:   189 SNITGLLEKAGCKT-FANLLVSSGVIKTFE---STVEKGLTVFAPSDEAFKARGVPDLTN 244

Query:   100 XXDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGI 159
                 E V+L+++H +  Y      +T  + + T A + +  +Y L  +T G+ V + +G+
Sbjct:   245 LTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAG-KYDLTTSTSGDEVILHTGV 303

Query:   160 TNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
               + ++ TV  +  + ++ VD VLLP +LFG
Sbjct:   304 GPSRLADTVVDETPVVIFTVDNVLLPAELFG 334

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2050822 FLA8 "FASCICLIN-like arabinogalactan protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 46/167 (27%), Positives = 81/167 (48%)

Query:    24 VVAQXXXXXXXXXXXXTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFA 83
             ++A             +N+T +LEKAG  T F  LL ++ V    +  +     G+T+FA
Sbjct:   172 IIAPGVLTAPAPSASLSNITGLLEKAGCKT-FANLLVSSGVLKTYESAVE---KGLTVFA 227

Query:    84 PTDNAFXXXXXXXXXXXXDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYP 143
             P+D AF              E V+L+++H +  Y      +T  N + T A + +  ++ 
Sbjct:   228 PSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAG-KFD 286

Query:   144 LNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 190
             L  +T G+ V + +G+  + ++ TV     + ++ VD VLLP +LFG
Sbjct:   287 LTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFG 333

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2135818 FLA2 "FASCICLIN-like arabinogalactan 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 43/149 (28%), Positives = 72/149 (48%)

Query:    42 VTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDT-NNGMTLFAPTDNAFXXXXXXXXXXX 100
             +T +LEK G    F  +LK+T      D    DT + G+T+F P+D+A            
Sbjct:   191 LTTILEKQG-CKAFSDILKSTGA----DKTFQDTVDGGLTVFCPSDSAVGKFMPKFKSLS 245

Query:   101 XDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGIT 160
                 K AL+ +H +P Y SL   ++ +  + T A + +  ++   V   G  V + + + 
Sbjct:   246 -PANKTALVLYHGMPVYQSLQMLRSGNGAVNTLATEGNN-KFDFTVQNDGEDVTLETDVV 303

Query:   161 NTSVSGTVYTDGQLAVYQVDKVLLPWDLF 189
                V GT+     L VY++DKVLLP +++
Sbjct:   304 TAKVMGTLKDQEPLIVYKIDKVLLPREIY 332

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LEJ6	FLA11_ARATH	No assigned EC number	0.6122	0.7661	0.7723	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XII0499 SubName- Full=Putative uncharacterized protein; (240 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam02469	123	pfam02469, Fasciclin, Fasciclin domain	4e-24
smart00554	97	smart00554, FAS1, Four repeated domains in the Fas	9e-16
COG2335	187	COG2335, COG2335, Secreted and surface protein con	2e-07

>gnl|CDD|217054 pfam02469, Fasciclin, Fasciclin domain

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 50  GQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVA 107
             F+ F+ LLKA  + D     LN +    T+FAPTD AF+ L +GTLN L  + ++   
Sbjct: 1   PGFSTFVALLKAAGLVDT----LNGSQGPFTVFAPTDEAFAKLPAGTLNFLLKDKEQLKN 56

Query: 108 LIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGT 167
           L+++HV+P  ++ S  +     L T  G        L V   G +V     +    V  +
Sbjct: 57  LLKYHVVPGRLTSSDLKNGGT-LATLQGS------KLRVNVTGGTVT----VNGARVVQS 105

Query: 168 VYTDGQLAVYQVDKVLLP 185
                   ++ +DKVLLP
Sbjct: 106 DIEATNGVIHVIDKVLLP 123

This extracellular domain is found repeated four times in grasshopper fasciclin I as well as in proteins from mammals, sea urchins, plants, yeast and bacteria. Length = 123

>gnl|CDD|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

 Score = 70.1 bits (172), Expect = 9e-16
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 80  TLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSR 139
           T+FAPTD AF  L    LNSL   +   L+ +HV+P  +S +        L T AG    
Sbjct: 1   TVFAPTDEAFQKLPPD-LNSLLADKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAG---- 54

Query: 140 FEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPW 186
               L +T  G S  ++  +    +           V+ +D+VLLP 
Sbjct: 55  --SKLRITRSGGSGTVT--VNGARIVEADIAATNGVVHVIDRVLLPP 97

Length = 97

>gnl|CDD|225214 COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 33/177 (18%)

Query: 23  TVVAQPAAAPAPGPPGPTNVTKVLE-------KAGQFTLFIRLLKATSVADQIDHQLNDT 75
             VA P  A      G   V                FT  +  LKA          L DT
Sbjct: 24  RAVAVPDLANGTLETGRAAVKGNRADIVESAANNPSFTTLVAALKAA--------GLVDT 75

Query: 76  NNG---MTLFAPTDNAFSSLSSGTLNSL----NDQEKVALIQFHVIPTYVSLSQFQTVSN 128
            N     T+FAPT+ AF+ L +GTL++L    N      ++ +HV+   ++ +  ++  +
Sbjct: 76  LNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKITAADLKSSGS 135

Query: 129 PLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLP 185
                   +      L +   G  V     + + +V+          ++ +DKVL+P
Sbjct: 136 --VKTVQGA-----DLKIKVTGGGVY----VNDATVTIADINASNGVIHVIDKVLIP 181

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
COG2335	187	Secreted and surface protein containing fasciclin-	99.92
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.88
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	99.81
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	99.17
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	99.04

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=2.9e-25  Score=188.33  Aligned_cols=136  Identities=24%  Similarity=0.444  Sum_probs=116.3

Q ss_pred             CcccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC-C---HHHHHHHhhhcc
Q 025798           38 GPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL-N---DQEKVALIQFHV  113 (248)
Q Consensus        38 ~~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L-s---~~~l~~LL~yHI  113 (248)
                      ...+|.+...++++|++|..+++.++|.++|++     .++||||||||+||.+++.++++.| .   .+.+..+|.|||
T Consensus        46 ~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~-----~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHV  120 (187)
T COG2335          46 NRADIVESAANNPSFTTLVAALKAAGLVDTLNE-----TGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHV  120 (187)
T ss_pred             chhHHHHHHccCcchHHHHHHHHhhhhHHHhcC-----CCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEE
Confidence            467888988899999999999999999999998     8999999999999999999988886 2   356789999999


Q ss_pred             cCceecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEEeeeeeeCCCeEEEEeCcccCCCCCC
Q 025798          114 IPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLF  189 (248)
Q Consensus       114 vp~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V~~dI~a~nglvIh~IDkVLlP~~l~  189 (248)
                      ++|.+..+++.. .+.++|+.|.      .++|...++.++|+.   ..++..||.++|| +||+||+||+|+...
T Consensus       121 v~Gk~~~~~l~~-~~~v~t~~G~------~~~i~~~~~~~~Vn~---a~v~~~di~a~Ng-vIhvID~Vl~Pp~~~  185 (187)
T COG2335         121 VEGKITAADLKS-SGSVKTVQGA------DLKIKVTGGGVYVND---ATVTIADINASNG-VIHVIDKVLIPPMDL  185 (187)
T ss_pred             EcCcccHHHhhc-cccceeecCc------eEEEEEcCCcEEEee---eEEEeccEeccCc-EEEEEeeeccCCCcc
Confidence            999999999986 3468999887      455555556688872   3445789999999 999999999998753

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=99.88  E-value=9.9e-23  Score=161.59  Aligned_cols=124  Identities=24%  Similarity=0.485  Sum_probs=93.8

Q ss_pred             CChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHhhhcccCceecccccccCC
Q 025798           50 GQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVALIQFHVIPTYVSLSQFQTVS  127 (248)
Q Consensus        50 ~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L--s~~~l~~LL~yHIvp~~~~~s~l~~~s  127 (248)
                      |+||+|.++|+.+|+.+.|++    +.+.+|||||+|+||++++.+..+.+  +.+++.++|+|||+++.++.+++....
T Consensus         1 ~~~s~f~~~l~~~~l~~~l~~----~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~   76 (128)
T PF02469_consen    1 PDLSTFSRLLEQAGLADLLND----SDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGK   76 (128)
T ss_dssp             -TTHHHHHHHHHTTCHHHHGC----SSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHH
T ss_pred             CCHHHHHHHHHHcCCHHHHhc----CCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccc
Confidence            579999999999999999942    27899999999999999865544444  457789999999999999999998752


Q ss_pred             cceec-CCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCcccCC
Q 025798          128 NPLRT-NAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVLLP  185 (248)
Q Consensus       128 ~~v~T-lag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVLlP  185 (248)
                      ..++| +.|.    .+.++....++.+.|++   .+.| ..++.++|| +||.||+||+|
T Consensus        77 ~~~~t~~~g~----~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG-~ih~id~vL~P  128 (128)
T PF02469_consen   77 QTLETLLNGQ----PLRVSSSPSNGTIYVNG---KARIVKSDIEASNG-VIHIIDDVLIP  128 (128)
T ss_dssp             EEEEBSSTTC----EEEEEEEGGTTEEEECC---EEEESEEEEEESSE-EEEEESS-TSS
T ss_pred             ccceeccCCC----EEEEEEEecCCceEecC---ceEEEeCCEEeCCE-EEEEECceECc
Confidence            36888 5554    34444442378899973   4665 589999999 99999999998

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=99.81  E-value=4.1e-20  Score=141.09  Aligned_cols=96  Identities=38%  Similarity=0.547  Sum_probs=77.8

Q ss_pred             EEEecCcHHHhcCCccccccCCHH-HHHHHhhhcccCceecccccccCCcceecCCCCCCCceeeEEEEEeC--CEEEEe
Q 025798           80 TLFAPTDNAFSSLSSGTLNSLNDQ-EKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFG--NSVNIS  156 (248)
Q Consensus        80 TIFAPtD~AF~~l~~~~l~~Ls~~-~l~~LL~yHIvp~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g--~~V~v~  156 (248)
                      |||||+|+||+++..+.++.+..+ .++++|+|||++++++.++|.. ...++|+.|.      .+.++..+  +.+.++
T Consensus         1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~-~~~~~Tl~g~------~l~v~~~~~~~~i~in   73 (99)
T smart00554        1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAGS------KLRVTRSGDSGTVTVN   73 (99)
T ss_pred             CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc-CCccccCCCC------EEEEEEeCCCCeEEEc
Confidence            899999999999987655566433 7899999999999999999986 3578999865      46666655  778886


Q ss_pred             cCccccEEeeeeeeCCCeEEEEeCcccCCC
Q 025798          157 SGITNTSVSGTVYTDGQLAVYQVDKVLLPW  186 (248)
Q Consensus       157 tG~~~a~V~~dI~a~nglvIh~IDkVLlP~  186 (248)
                      .   ..++..|+.++|| +||+||+||+|+
T Consensus        74 ~---~~v~~~di~~~nG-vih~Id~vL~P~   99 (99)
T smart00554       74 G---ARIVEADIAATNG-VVHVIDRVLLPP   99 (99)
T ss_pred             c---eEEEECCEecCCe-EEEEECceeCCC
Confidence            3   2345689999999 999999999985

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=99.17  E-value=2.5e-11  Score=120.68  Aligned_cols=131  Identities=20%  Similarity=0.289  Sum_probs=100.4

Q ss_pred             CcccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccCCHHHHHHHhhhcccCce
Q 025798           38 GPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTY  117 (248)
Q Consensus        38 ~~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~Ls~~~l~~LL~yHIvp~~  117 (248)
                      ...+++++..++. -|++.+++.+-++.+.|..     ++.+|+|+|+|++|+.+.+..    .+...+++|+|||++.+
T Consensus       372 ~~~~l~~La~e~~-~st~~rlv~elgll~~L~~-----n~e~t~~lp~n~~fd~~~~~~----~r~l~~qIL~~HII~~~  441 (682)
T KOG1437|consen  372 SLKNLMSLAREDE-ISTSMRLVAELGLLTALAP-----NDEATLLLPTNNLFDDLTPLE----SRRLAEQILYNHIIPEY  441 (682)
T ss_pred             hHHHHHHHHhccc-ccHHHHHHHhccceEEEcC-----CCceEEeeehhhhccCCChhh----hHHHHHHHHHHhCcchh
Confidence            4667888777665 5999999999998887776     556999999999999976532    23337899999999999


Q ss_pred             ecccccccCCcceecCCCCCCCceeeEEEEEeCCE-----EEEecCccccEEeeeeeeCCCeEEEEeCcccCC
Q 025798          118 VSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNS-----VNISSGITNTSVSGTVYTDGQLAVYQVDKVLLP  185 (248)
Q Consensus       118 ~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~-----V~v~tG~~~a~V~~dI~a~nglvIh~IDkVLlP  185 (248)
                      .+.++...+.+.++|+.+.    ++..-+.+..+.     +.++ | ...++..|+...|| +||.||+|+.|
T Consensus       442 ~~~~~~y~~~~~v~t~g~~----~l~~fv~r~~~s~~~t~i~~~-~-~~~Ii~aDi~~~nG-vvH~id~vl~p  507 (682)
T KOG1437|consen  442 LTSSSMYNGQTTVRTLGKN----KLLYFVYRHSVSANVTDILIG-N-EACIIEADISVKNG-VVHIIDRVLDP  507 (682)
T ss_pred             hhhhhhhcccceeeccCCe----EEEEEEecccccccceeeecc-c-eeeEEecccceecC-ceEEeeEEcCc
Confidence            9999988876688888775    444444443222     3333 3 34456789999999 99999999999

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=99.04  E-value=7.5e-10  Score=110.32  Aligned_cols=132  Identities=21%  Similarity=0.326  Sum_probs=93.2

Q ss_pred             cccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccCC-HHHHHHHhhhcccCce
Q 025798           39 PTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLN-DQEKVALIQFHVIPTY  117 (248)
Q Consensus        39 ~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~Ls-~~~l~~LL~yHIvp~~  117 (248)
                      |.++.+.|++++++|.|.++++..++.++|+.     .+.+|+|+|||+||.+...+... +. ...+..+++||++++.
T Consensus       507 p~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~-----~~~~t~fvPt~ka~~~~~~~~~~-~~~~~~l~~~l~yH~v~~~  580 (682)
T KOG1437|consen  507 PVSLMEDLKTDGRISGTVQGLEGVLLPEELTP-----EGNYTLFVPTNKAWQKSTKDEKS-LFHKKALQDFLKYHLVPGQ  580 (682)
T ss_pred             cccHHHHHhhccchhhhHHhhhhcCChhhhcc-----CCceEEEeecccccccCCcchhh-cchHHHHHHHHHhccccce
Confidence            38999999999999999999999999999965     89999999999999997765322 43 3568999999999987


Q ss_pred             ecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEe----cCccc-cE-EeeeeeeCCCeEEEEeCcccCCCCCC
Q 025798          118 VSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNIS----SGITN-TS-VSGTVYTDGQLAVYQVDKVLLPWDLF  189 (248)
Q Consensus       118 ~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~----tG~~~-a~-V~~dI~a~nglvIh~IDkVLlP~~l~  189 (248)
                      +.   +.-.+.+..+.       .+.++.  .++.+.+.    .|..+ .+ +..++...|| ++|+||+||.|++++
T Consensus       581 ~~---ls~~~~~~v~~-------~~k~s~--~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~-~~h~i~~vl~p~~l~  645 (682)
T KOG1437|consen  581 SR---LSLGSSPYVMI-------QVKLSL--RGDHLFFSLVNPRGDVNKERLVGIDIMGTNG-VVHVIDLVLKPPDLP  645 (682)
T ss_pred             ee---eecccccceee-------eeeEEE--ecccEEeeeeccccceeeeeeeccceeeecc-eeEEEEEEcccCcch
Confidence            65   21111111111       012222  22222221    23222 33 4579999999 999999999998664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	4e-11
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	6e-10
2vxp_A	132	Transforming growth factor-beta-induced protein IG	3e-09
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	6e-08
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	5e-07

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1 Length = 163

 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 22/171 (12%)

Query: 20  CTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNG- 78
           C     A P    +        V        + T     L            L DT N  
Sbjct: 8   CAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQV---NLVDTLNSG 64

Query: 79  -MTLFAPTDNAFSSLSSGTLNSL--NDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAG 135
             T+FAPT+ AFS L + T++ L  N     +++ +HV+    S +    V    +T  G
Sbjct: 65  QYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPAN---VVGTRQTLQG 121

Query: 136 DSSRFEYPLNVTTFGNSVNI-SSGITNTSVSGTVYTDGQLAVYQVDKVLLP 185
                   + VT  GNS+ + ++ +    VS     +    VY +D VL+P
Sbjct: 122 A------SVTVTGQGNSLKVGNADVVCGGVST---ANA--TVYMIDSVLMP 161

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A Length = 137

 Score = 55.1 bits (133), Expect = 6e-10
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 27/152 (17%)

Query: 41  NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL 100
           ++ +    AG FT  +   +A  + D +       +   T+FAPTD AF++L  GT+  L
Sbjct: 4   DIVETATGAGSFTTLLTAAEAAGLVDTLK-----GDGPFTVFAPTDAAFAALPEGTVEDL 58

Query: 101 NDQEK----VALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNIS 156
              E       ++ +HV+P  V  S          T  G        L VT  G      
Sbjct: 59  LKPENKEKLTEILTYHVVPGEVMSSDLTEGMT-AETVEGG------ALTVTLEGGPKVNG 111

Query: 157 SGITNTSVS---GTVYTDGQLAVYQVDKVLLP 185
             I+   V    G ++         +D VL+P
Sbjct: 112 VSISQPDVDASNGVIHV--------IDGVLMP 135

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A Length = 132

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 20/146 (13%)

Query: 41  NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL 100
            V  VL+   +F++ +  +++  + + ++          T+FAPT+ AF +L     + L
Sbjct: 3   TVMDVLKGDNRFSMLVAAIQSAGLTETLN-----REGVYTVFAPTNEAFRALPPRERSRL 57

Query: 101 -NDQEK-VALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNI-SS 157
             D ++   ++++H+    +           L++  GD       L V+   N V++   
Sbjct: 58  LGDAKELANILKYHIGDEILVSGGIGA-LVRLKSLQGD------KLEVSLKNNVVSVNKE 110

Query: 158 GITNTSVSGTVYTDGQLAVYQVDKVL 183
            +    +     T+G   V+ +  VL
Sbjct: 111 PVAEPDIMA---TNG--VVHVITNVL 131

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324

 Score = 51.5 bits (123), Expect = 6e-08
 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 17/160 (10%)

Query: 37  PGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGT 96
              T V   LE     +   ++ K +   DQ    LN+T    T F P D  +       
Sbjct: 156 VPYTTVLGKLESDPMMSDTYKMGKFSHFNDQ----LNNTQRRFTYFVPRDKGWQKTELDY 211

Query: 97  -------LNSLNDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRF--EYPLNVT 147
                    +       ++++ H+  +    +    V     + +     F     + V 
Sbjct: 212 PSAHKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVE 271

Query: 148 TFGNSVNISSGITNTSVSGT--VYTDGQLAVYQVDKVLLP 185
                  I       +V       T+G   ++ +D  LL 
Sbjct: 272 EEAGRYVIIWNYKKINVYRPDVECTNG--IIHVIDYPLLE 309

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 12/162 (7%)

Query: 29  AAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNA 88
           AAA         +  +  E       +  ++        +   +N     +T+ AP++ A
Sbjct: 2   AAADTTVTQFLQSFKENAENGALRKFYEVIMDN---GGAVLDDINSLTE-VTILAPSNEA 57

Query: 89  FSSLSSGTLNSLNDQEK-VALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVT 147
           ++S +   +  L D+ K   ++  H+I   +++ + +   N        +      L   
Sbjct: 58  WNSSNINNV--LRDRNKMRQILNMHIIKDRLNVDKIRQ-KNANLIAQVPTVNNNTFLYFN 114

Query: 148 TFGNSVNISSGITNTSVSGTVYTDGQLA----VYQVDKVLLP 185
             G   +    +    V+ TV           V+ +D VL  
Sbjct: 115 VRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGV 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.96
2vxp_A	132	Transforming growth factor-beta-induced protein IG	99.96
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	99.94
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.9
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.89

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=99.96  E-value=8.5e-30  Score=206.08  Aligned_cols=131  Identities=27%  Similarity=0.453  Sum_probs=114.2

Q ss_pred             cccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC----CHHHHHHHhhhccc
Q 025798           39 PTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL----NDQEKVALIQFHVI  114 (248)
Q Consensus        39 ~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L----s~~~l~~LL~yHIv  114 (248)
                      +.||+++|+++++||+|.++|+++|+.+.|++     .+++|||||+|+||++++.+.++.|    +.+.++++|+|||+
T Consensus         2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv   76 (137)
T 1w7d_A            2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKG-----DGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVV   76 (137)
T ss_dssp             CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTS-----SSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEE
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcC-----CCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEe
Confidence            46899999999999999999999999999987     7899999999999999988777777    34678999999999


Q ss_pred             CceecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCcccCCCC
Q 025798          115 PTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVLLPWD  187 (248)
Q Consensus       115 p~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVLlP~~  187 (248)
                      ++.++.++|..+ ..++|+.|.      .|+|+..+| ++|++    ++| ..|+.++|| +||+||+||+|+.
T Consensus        77 ~~~~~~~~l~~~-~~~~tl~G~------~l~v~~~~g-v~vn~----a~v~~~di~~~NG-vIHvID~VL~P~s  137 (137)
T 1w7d_A           77 PGEVMSSDLTEG-MTAETVEGG------ALTVTLEGG-PKVNG----VSISQPDVDASNG-VIHVIDGVLMPGA  137 (137)
T ss_dssp             ESCCCTTTSCSS-EEEECTTSC------EEEEECTTS-CEETT----EECSBCCCBCSSS-EEEBCSSCCSSCC
T ss_pred             CcEEcHHHhcCC-CeeeccCCc------eEEEEecCC-EEEeC----cEEEECCeecCCe-EEEEECeeeCCCC
Confidence            999999999864 468999876      677877777 88863    554 679999999 9999999999974

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=99.96  E-value=2e-28  Score=196.83  Aligned_cols=129  Identities=19%  Similarity=0.368  Sum_probs=111.6

Q ss_pred             ccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHhhhcccCce
Q 025798           40 TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVALIQFHVIPTY  117 (248)
Q Consensus        40 ~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L--s~~~l~~LL~yHIvp~~  117 (248)
                      .||+++|+++++||+|.++|+++|+.+.|++     .+++|||||+|+||++++.+.++.|  ++++++++|+|||+++.
T Consensus         2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~   76 (132)
T 2vxp_A            2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNR-----EGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEI   76 (132)
T ss_dssp             CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHS-----SCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSC
T ss_pred             ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcC-----CCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCce
Confidence            4899999999999999999999999999997     7899999999999999988766665  57789999999999999


Q ss_pred             ecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEEeeeeeeCCCeEEEEeCcccC
Q 025798          118 VSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLL  184 (248)
Q Consensus       118 ~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V~~dI~a~nglvIh~IDkVLl  184 (248)
                      ++.+++.. ...++|+.|+      .|.|+..++.++|++   ..++..|+.++|| +||+||+||+
T Consensus        77 ~~~~~l~~-~~~~~tl~G~------~l~v~~~~~~v~vn~---a~v~~~di~a~NG-vIHvID~VLl  132 (132)
T 2vxp_A           77 LVSGGIGA-LVRLKSLQGD------KLEVSLKNNVVSVNK---EPVAEPDIMATNG-VVHVITNVLQ  132 (132)
T ss_dssp             CCSTTCSS-CEEEEBTTSS------EEEEEEETTEEEESS---CBEEEEEEEETTE-EEEEESSCC-
T ss_pred             eehhhccC-CceEecCCCC------EEEEEEeCCEEEEec---cEEEEcceecCCE-EEEEECcEeC
Confidence            98888865 3478999876      577888888999973   2345689999999 9999999985

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=99.94  E-value=2.4e-28  Score=203.57  Aligned_cols=130  Identities=28%  Similarity=0.445  Sum_probs=113.4

Q ss_pred             CcccHHHHHHhCCChHHHHHHHH-----HCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHhh
Q 025798           38 GPTNVTKVLEKAGQFTLFIRLLK-----ATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVALIQ  110 (248)
Q Consensus        38 ~~~nI~~iL~~~~~fS~f~~lL~-----~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L--s~~~l~~LL~  110 (248)
                      ...+|+++|+++++||+|.++|+     .+|+.+.|++     .+ +|||||+|+||++++.+.++.|  +.++++++|+
T Consensus        26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~-----~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~   99 (163)
T 1nyo_A           26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNS-----GQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILT   99 (163)
T ss_dssp             HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTS-----SS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHH
T ss_pred             CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCC-----CC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHH
Confidence            46799999999999999999999     9999999986     56 9999999999999987767666  3467899999


Q ss_pred             hcccCceecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCcccCCCC
Q 025798          111 FHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVLLPWD  187 (248)
Q Consensus       111 yHIvp~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVLlP~~  187 (248)
                      |||+++.++.++|.   +.++|+.|.      .|+|+..++.|+|++    ++| ..||.+.|| +||+||+||+|+.
T Consensus       100 yHvv~g~~~~~~l~---g~~~Tl~G~------~l~v~~~~~~v~vn~----a~V~~~di~a~NG-vIHvID~VL~P~~  163 (163)
T 1nyo_A          100 YHVVAGQTSPANVV---GTRQTLQGA------SVTVTGQGNSLKVGN----ADVVCGGVSTANA-TVYMIDSVLMPPA  163 (163)
T ss_dssp             HTEEESCCCTTTSC---EEEECTTSS------EEEEEECSSCEEETT----EECSSBCCCCSSE-EEBCBSSCCCCCC
T ss_pred             hceECCEEcHHHhC---CccccCCCC------EEEEEEECCEEEEec----cEEEECceEcCCE-EEEEECcEeCCCC
Confidence            99999999999997   478999875      678888888899863    554 579999999 9999999999973

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.90  E-value=1.8e-24  Score=196.85  Aligned_cols=143  Identities=17%  Similarity=0.149  Sum_probs=115.0

Q ss_pred             cccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCC----ccccccCCH---HHHHHHhhh
Q 025798           39 PTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLS----SGTLNSLND---QEKVALIQF  111 (248)
Q Consensus        39 ~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~----~~~l~~Ls~---~~l~~LL~y  111 (248)
                      ..++.++|+++++||+|.++++.+|+.+.|+.    +.+++|||||+|+||+++.    .+.++.|.+   ++++++|+|
T Consensus       158 ~~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~----~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~y  233 (324)
T 1o70_A          158 YTTVLGKLESDPMMSDTYKMGKFSHFNDQLNN----TQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILER  233 (324)
T ss_dssp             CSCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC----SSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHT
T ss_pred             hhhHHHHhhcCchHHHHHHHHHhhCHHHHhCC----CCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHh
Confidence            46899999999999999999999998888763    3689999999999999984    333444533   478999999


Q ss_pred             cccCc--eecccccccCCc-----ceecCCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCccc
Q 025798          112 HVIPT--YVSLSQFQTVSN-----PLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVL  183 (248)
Q Consensus       112 HIvp~--~~~~s~l~~~s~-----~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVL  183 (248)
                      ||+++  .|+.++|...++     .++|+. +    .+.++++..|+.+.|+.+..++.| ..|+.+.|| +||+||+||
T Consensus       234 Hvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~-~----~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NG-vIHvID~VL  307 (324)
T 1o70_A          234 HLAISDKEYTMKDLVKFSQESGSVILPTFR-D----SLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNG-IIHVIDYPL  307 (324)
T ss_dssp             TEEEESSCCCHHHHHHHHHHSSSEEEECSS-S----EEEEEEEEETTEEEEEETTEEEEEEEEEEEETTE-EEEEESSCS
T ss_pred             cEeCCcceEcHHHHhhhccCCCeeeeeccC-C----cEEEEEEecCCEEEEEecCceeEEEEcccccCCC-eEEEeceee
Confidence            99998  888888875332     388987 4    567777767889999755445655 689999999 999999999


Q ss_pred             CCCCCCCC
Q 025798          184 LPWDLFGA  191 (248)
Q Consensus       184 lP~~l~~~  191 (248)
                      +|++....
T Consensus       308 ~P~~~~~~  315 (324)
T 1o70_A          308 LEEKDVVV  315 (324)
T ss_dssp             CCTTTTC-
T ss_pred             cCCccccc
Confidence            99987543

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.89  E-value=2.3e-23  Score=189.50  Aligned_cols=137  Identities=20%  Similarity=0.321  Sum_probs=104.4

Q ss_pred             cccHHHHHH------hCCChHHHHHHHHHCC--cHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHH
Q 025798           39 PTNVTKVLE------KAGQFTLFIRLLKATS--VADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVAL  108 (248)
Q Consensus        39 ~~nI~~iL~------~~~~fS~f~~lL~~tg--l~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L--s~~~l~~L  108 (248)
                      ..||+++|+      ++++||+|.++|+++|  +.+.|++     .+++|||||+|+||.++.   ++.|  +++.++++
T Consensus         5 ~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~-----~~~~TvFAPtn~Af~~~~---~~~l~~~~~~l~~i   76 (324)
T 1o70_A            5 DTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINS-----LTEVTILAPSNEAWNSSN---INNVLRDRNKMRQI   76 (324)
T ss_dssp             --------------CCHHHHHHHHHHHHHTCSHHHHHHHT-----CSSEEEEEECHHHHHHTC---THHHHTCHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcC-----CCCeEEEEEChHhhhccc---HhhhhCCHHHHHHH
Confidence            568999998      6889999999999999  9999987     789999999999998763   3333  56789999


Q ss_pred             hhhcccCceecccccccCCc----ceecCCCCCCCceeeEEEEEe--CCEEEEecCccccEE-eeeeeeCCCeEEEEeCc
Q 025798          109 IQFHVIPTYVSLSQFQTVSN----PLRTNAGDSSRFEYPLNVTTF--GNSVNISSGITNTSV-SGTVYTDGQLAVYQVDK  181 (248)
Q Consensus       109 L~yHIvp~~~~~s~l~~~s~----~v~Tlag~~~~g~~~L~Vt~~--g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDk  181 (248)
                      |+|||++++++.++|..+.+    .++|+.|+.   .+.++++..  ++.+.+++|..+++| ..|+.++|| +||+||+
T Consensus        77 L~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~---~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NG-vIhvID~  152 (324)
T 1o70_A           77 LNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNT---FLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNG-YVHIIDH  152 (324)
T ss_dssp             HHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTC---EEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSE-EEEEESS
T ss_pred             HHhcEeCCeecHHHHhhccCCCceEEEcCCCCc---eEEEEEeecCCceEEEEcCCceeEEEEeccccccCc-EEEEEch
Confidence            99999999999999876532    688998862   245676643  356888876555654 689999999 9999999


Q ss_pred             ccCCCC
Q 025798          182 VLLPWD  187 (248)
Q Consensus       182 VLlP~~  187 (248)
                      ||.|+.
T Consensus       153 VL~pp~  158 (324)
T 1o70_A          153 VLGVPY  158 (324)
T ss_dssp             CTTSCC
T ss_pred             hhhhch
Confidence            999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1o70a2	157	b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Dros	2e-12
d1o70a1	140	b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Dros	3e-12
d1nyoa_	163	b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobact	3e-05

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 157

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 13/155 (8%)

Query: 40  TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNS 99
           T V   LE     +   ++ K +   DQ    LN+T    T F P D  +        ++
Sbjct: 1   TTVLGKLESDPMMSDTYKMGKFSHFNDQ----LNNTQRRFTYFVPRDKGWQKTELDYPSA 56

Query: 100 L-------NDQEKVALIQFHVIPTYV--SLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFG 150
                         ++++ H+  +    ++      S    +    + R    + V    
Sbjct: 57  HKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEA 116

Query: 151 NSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLP 185
               I       +V           ++ +D  LL 
Sbjct: 117 GRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLE 151

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 18/139 (12%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 50  GQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALI 109
           G    F  ++        +   +N     +T+ AP++ A++S +   +   +  +   ++
Sbjct: 4   GALRKFYEVIMDN--GGAVLDDINSLTE-VTILAPSNEAWNSSNINNVLR-DRNKMRQIL 59

Query: 110 QFHVIPTYVSLSQFQTVSNPLRTNA---GDSSRFEYPLNVTTFGNSVNISSGITNTSVSG 166
             H+I   +++ + +  +  L        +++   + +        + +  G  N +V  
Sbjct: 60  NMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQ 119

Query: 167 TVYTDGQLAVYQVDKVLLP 185
                    V+ +D VL  
Sbjct: 120 ADVAQTNGYVHIIDHVLGV 138

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 163

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.3 bits (96), Expect = 3e-05
 Identities = 39/170 (22%), Positives = 59/170 (34%), Gaps = 20/170 (11%)

Query: 20  CTNTVVAQPAAAPAPGPPGPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNG- 78
           C     A P    +        V        + T     L            L DT N  
Sbjct: 8   CAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSG---QLNPQVNLVDTLNSG 64

Query: 79  -MTLFAPTDNAFSSLSSGTLNSL--NDQEKVALIQFHVIPTYVSLSQFQTVSNPLRTNAG 135
             T+FAPT+ AFS L + T++ L  N     +++ +HV+    S +    V    +T  G
Sbjct: 65  QYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPAN---VVGTRQTLQG 121

Query: 136 DSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLP 185
            S       N    GN+  +  G+           +    VY +D VL+P
Sbjct: 122 ASVTVTGQGNSLKVGNADVVCGGV--------STANA--TVYMIDSVLMP 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1nyoa_	163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.93
d1o70a2	157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.89
d1o70a1	140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.88

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=2.9e-27  Score=195.58  Aligned_cols=129  Identities=27%  Similarity=0.436  Sum_probs=110.3

Q ss_pred             cccHHHHHHhCCChHHHHHHHHH-----CCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccCC--HHHHHHHhhh
Q 025798           39 PTNVTKVLEKAGQFTLFIRLLKA-----TSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLN--DQEKVALIQF  111 (248)
Q Consensus        39 ~~nI~~iL~~~~~fS~f~~lL~~-----tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~Ls--~~~l~~LL~y  111 (248)
                      ..++.+.++.+++||+|..+|+.     +||.+.|+      .++||||||+|+||++++.+.++.|.  ++.++++|+|
T Consensus        27 ~~~v~~~a~~~p~lstl~~Al~a~~~~~a~L~~~L~------~gpfTvFAPtn~AF~~l~~~~~~~l~~~~~~L~~iL~y  100 (163)
T d1nyoa_          27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN------SGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTY  100 (163)
T ss_dssp             HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHT------SSSEEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHH
T ss_pred             cchHHHHHhcCCchHHHHHHHhhccccccchhHhhc------CCCeEEEEECcHHHHhcCHHHHHhhhhhHHHHHHhhhh
Confidence            46799999999999999999984     79999997      37899999999999999887766653  4678999999


Q ss_pred             cccCceecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccE-EeeeeeeCCCeEEEEeCcccCCCC
Q 025798          112 HVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTS-VSGTVYTDGQLAVYQVDKVLLPWD  187 (248)
Q Consensus       112 HIvp~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~-V~~dI~a~nglvIh~IDkVLlP~~  187 (248)
                      ||++++++.+++..   .++|+.|.      .+.|+..++.++|++    ++ +..||.++|| +||+||+||+|+.
T Consensus       101 HVv~g~~~~~~l~~---~~~Tl~G~------~l~v~~~~~~i~v~~----a~Vv~~di~a~NG-vIHvID~VLlPPa  163 (163)
T d1nyoa_         101 HVVAGQTSPANVVG---TRQTLQGA------SVTVTGQGNSLKVGN----ADVVCGGVSTANA-TVYMIDSVLMPPA  163 (163)
T ss_dssp             TEEESCCCTTTSCE---EEECTTSS------EEEEEECSSCEEETT----EECSSBCCCCSSE-EEBCBSSCCCCCC
T ss_pred             hhhhhhhhhhhhhh---hhhhccCc------ceeEEecCCEEEEec----eEEEECCeecCCc-EEEEECccccCCC
Confidence            99999999998853   57898876      577887888899863    44 4689999999 9999999999984

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=1.1e-23  Score=170.44  Aligned_cols=137  Identities=17%  Similarity=0.113  Sum_probs=101.9

Q ss_pred             ccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCcccc----ccC---CHHHHHHHhhhc
Q 025798           40 TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTL----NSL---NDQEKVALIQFH  112 (248)
Q Consensus        40 ~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l----~~L---s~~~l~~LL~yH  112 (248)
                      .+|.++|+.+++||.|.++++.+|+.+.|+.    +.+++|||||+|+||+++.....    +.+   .++.++++|+||
T Consensus         1 ~Ti~~~l~~~p~ls~~~~~~~~s~l~~~L~~----~~~~~TvFaPtn~Af~~l~~~~~~~~~~~~~~~~~~~l~~il~~H   76 (157)
T d1o70a2           1 TTVLGKLESDPMMSDTYKMGKFSHFNDQLNN----TQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERH   76 (157)
T ss_dssp             SCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC----SSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTT
T ss_pred             CcHHHHHHhCccHHHHHHHHHhCCHHHHHhC----CCCceEEEecCHHHHHHhhhhccchhhhhcCcccHHHHHHHheeE
Confidence            3799999999999999999999999888875    46789999999999999754321    122   246689999999


Q ss_pred             ccCceeccccccc-------CCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCcccC
Q 025798          113 VIPTYVSLSQFQT-------VSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVLL  184 (248)
Q Consensus       113 Ivp~~~~~s~l~~-------~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVLl  184 (248)
                      |+++.....+...       .....+|+.+     .+.+++...++.+.+..+...++| ..|+.+.|| +||+||+||+
T Consensus        77 iv~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~V~~~Di~a~NG-viHvID~VLl  150 (157)
T d1o70a2          77 LAISDKEYTMKDLVKFSQESGSVILPTFRD-----SLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNG-IIHVIDYPLL  150 (157)
T ss_dssp             EEEESSCCCHHHHHHHHHHSSSEEEECSSS-----EEEEEEEEETTEEEEEETTEEEEEEEEEEEETTE-EEEEESSCSC
T ss_pred             EecccccchhhhhhhhhccCCceeEEecCC-----cEEEEEEcCCcEEEEecCCccceEEECCEecCCe-EEEEECceec
Confidence            9998654333211       1112334332     456777777777776544445654 689999999 9999999999


Q ss_pred             CC
Q 025798          185 PW  186 (248)
Q Consensus       185 P~  186 (248)
                      |+
T Consensus       151 p~  152 (157)
T d1o70a2         151 EE  152 (157)
T ss_dssp             CT
T ss_pred             CC
Confidence            96

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=3.8e-23  Score=163.92  Aligned_cols=129  Identities=18%  Similarity=0.289  Sum_probs=96.9

Q ss_pred             hCCChHHHHHHHHHCC--cHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccCCHHHHHHHhhhcccCceeccccccc
Q 025798           48 KAGQFTLFIRLLKATS--VADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTYVSLSQFQT  125 (248)
Q Consensus        48 ~~~~fS~f~~lL~~tg--l~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~Ls~~~l~~LL~yHIvp~~~~~s~l~~  125 (248)
                      ++++|++|.++|+.+|  +.++|++     .+++|||||+|+||.++....+. .+.++++++|+|||+++.++.+++..
T Consensus         2 ~~~~~~~f~~~i~~~g~~~~~~l~~-----~~~~TvFAPtn~Af~~~~~~~~~-~~~~~l~~~l~yHiv~~~~~~~~l~~   75 (140)
T d1o70a1           2 ENGALRKFYEVIMDNGGAVLDDINS-----LTEVTILAPSNEAWNSSNINNVL-RDRNKMRQILNMHIIKDRLNVDKIRQ   75 (140)
T ss_dssp             CHHHHHHHHHHHHHTCSHHHHHHHT-----CSSEEEEEECHHHHHHTCTHHHH-TCHHHHHHHHHHTEESSCCCHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHhcCChhhhc-CCHHHHHHHHHhhccCCeEEHHHHhc
Confidence            4567999999999987  5677776     78999999999999987654321 25677899999999999999888865


Q ss_pred             CC----cceecCCCCCCCceeeEEEEEeC--CEEEEecCccccE-EeeeeeeCCCeEEEEeCcccCCC
Q 025798          126 VS----NPLRTNAGDSSRFEYPLNVTTFG--NSVNISSGITNTS-VSGTVYTDGQLAVYQVDKVLLPW  186 (248)
Q Consensus       126 ~s----~~v~Tlag~~~~g~~~L~Vt~~g--~~V~v~tG~~~a~-V~~dI~a~nglvIh~IDkVLlP~  186 (248)
                      ..    ..++|+.|+.   .+..++...+  ..+.+..+...++ +..|+.+.|| +||+||+||.||
T Consensus        76 ~~~~~~~~~~t~~g~~---~~~~~~~~~~~~~~~~~~~~~~~a~V~~~Di~~~NG-vIH~ID~VL~~P  139 (140)
T d1o70a1          76 KNANLIAQVPTVNNNT---FLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNG-YVHIIDHVLGVP  139 (140)
T ss_dssp             HTSSSCCCEEBSSTTC---EEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSE-EEEEESSCTTSC
T ss_pred             CcccCceEeeecCCCc---eEEEEEeccceeEEEEecCCcceEEEEeCCEecCCe-EEEEECCccCCc
Confidence            32    2467777662   3344454432  3455554444555 4689999999 999999999987