Citrus Sinensis ID: 025817

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAPLSNDY
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEcccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHHHHHcccccccccccc
ccEEEccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccc
maiafgrfddsfslgSFKAYLAEFISTLLFVFAGVGSAIAFNKMtadaaldpsGLVAIAICHGFALFVAVAIGanisgghvnpAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTgglavpthnvaagvGAIEGVVMEIIITFGLVYTVyataadpkkgslgtiapiAIGFIVGAnilaagpfsggsmnparsfgpavasgnfqdnwiywvgpliggglAGLIYgnvfmhsehaplsndy
maiafgrfddsfsLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHsehaplsndy
MAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNvaagvgaiegvvmeiiiTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVgpliggglagliygNVFMHSEHAPLSNDY
***AFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG******SFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMH**********
MAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFM***********
MAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAPLSNDY
MAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEH*******
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
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MAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAPLSNDY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
Q41951250 Aquaporin TIP2-1 OS=Arabi yes no 0.983 0.972 0.848 1e-113
Q5Z6F0248 Probable aquaporin TIP2-2 yes no 0.979 0.975 0.790 1e-104
Q84RL6248 Aquaporin TIP2-3 OS=Zea m N/A no 0.995 0.991 0.740 1e-98
Q9FGL2250 Aquaporin TIP2-3 OS=Arabi no no 0.995 0.984 0.743 1e-98
P21653250 Probable aquaporin TIP-ty N/A no 0.987 0.976 0.797 2e-97
P24422250 Probable aquaporin TIP-ty N/A no 0.987 0.976 0.797 4e-97
P33560250 Probable aquaporin TIP-ty N/A no 0.995 0.984 0.779 4e-97
Q9ATL8250 Aquaporin TIP2-2 OS=Zea m N/A no 1.0 0.988 0.713 2e-95
Q7XA61248 Probable aquaporin TIP2-1 no no 0.995 0.991 0.748 4e-93
Q41975250 Probable aquaporin TIP2-2 no no 1.0 0.988 0.754 5e-93
>sp|Q41951|TIP21_ARATH Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2 Back     alignment and function desciption
 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/244 (84%), Positives = 227/244 (93%), Gaps = 1/244 (0%)

Query: 3   IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICH 62
           +AFG FDDSFSL S +AYLAEFISTLLFVFAGVGSAIA+ K+T+DAALD  GLVAIA+CH
Sbjct: 4   VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCH 63

Query: 63  GFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 122
           GFALFVAVAIGANISGGHVNPAVTFGLA+GGQIT++TG+FYWIAQLLGS  A FLLK VT
Sbjct: 64  GFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVT 123

Query: 123 GGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGA 182
           GGLAVPTH+VAAG+G+IEGVVMEIIITF LVYTVYATAADPKKGSLGTIAP+AIG IVGA
Sbjct: 124 GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGA 183

Query: 183 NILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFM-HSEHA 241
           NILAAGPFSGGSMNPARSFGPAVA+G+F  +W+YWVGPLIGGGLAGLIYGNVFM  SEH 
Sbjct: 184 NILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHV 243

Query: 242 PLSN 245
           PL++
Sbjct: 244 PLAS 247
Aquaporin required to facilitate the transport of water from the vacuolar compartment to the cytoplasm. Does not promote glycerol permability. Its function is impaired by Hg(2+). Transports urea in yeast cells and Xenopus laevis oocytes in a pH-independent manner. Transports methylammonium or ammonium in yeast cells and Xenopus laevis oocytes, preferentially at high medium pH. May participate in vacuolar compartmentation and detoxification of ammonium.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5Z6F0|TIP22_ORYSJ Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q84RL6|TIP23_MAIZE Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2 Back     alignment and function description
>sp|Q9FGL2|TIP23_ARATH Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1 Back     alignment and function description
>sp|P21653|TIP1_TOBAC Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P24422|TIP2_TOBAC Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2 Back     alignment and function description
>sp|P33560|TIP_ANTMA Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1 Back     alignment and function description
>sp|Q9ATL8|TIP22_MAIZE Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q7XA61|TIP21_ORYSJ Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q41975|TIP22_ARATH Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
383479042248 aquaporin TIP2;1 [Quercus petraea] 0.991 0.987 0.897 1e-121
255549896248 tonoplast intrinsic protein, putative [R 0.991 0.987 0.906 1e-120
350543338248 aquaporin TIP2 [Malus prunifolia] 0.991 0.987 0.893 1e-119
292653543248 aquaporin TIP2;3 [Gossypium hirsutum] 0.991 0.987 0.906 1e-119
3249565248 aquaporin [Vernicia fordii] 0.991 0.987 0.893 1e-118
224054384247 aquaporin, MIP family, TIP subfamily [Po 0.987 0.987 0.893 1e-118
1439609248 delta-tonoplast intrinsic protein [Gossy 0.991 0.987 0.897 1e-118
444300812248 aquaporin protein 12 [Camellia sinensis] 0.995 0.991 0.865 1e-118
12006841248 putative delta TIP [Nicotiana glauca] 0.991 0.987 0.885 1e-118
118485017247 unknown [Populus trichocarpa] 0.987 0.987 0.889 1e-117
>gi|383479042|gb|AFH36343.1| aquaporin TIP2;1 [Quercus petraea] Back     alignment and taxonomy information
 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/245 (89%), Positives = 237/245 (96%)

Query: 3   IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICH 62
           IAFGRFDD+FSLGSF++Y+AEFISTLLFVFAGVGSAIA+NK+T++AALDP GLVAIAICH
Sbjct: 4   IAFGRFDDTFSLGSFRSYIAEFISTLLFVFAGVGSAIAYNKLTSNAALDPEGLVAIAICH 63

Query: 63  GFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 122
           GFALFVAV++GANISGGHVNPAVTFGLALGGQIT+LTGIFYWIAQLLGSIVA FLLK VT
Sbjct: 64  GFALFVAVSVGANISGGHVNPAVTFGLALGGQITVLTGIFYWIAQLLGSIVACFLLKAVT 123

Query: 123 GGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGA 182
           GGLA+P H++AAGVGAIEGVVMEIIITF LVYTVYATAADPKKGSLG IAPIAIGFIVGA
Sbjct: 124 GGLAIPIHSLAAGVGAIEGVVMEIIITFALVYTVYATAADPKKGSLGIIAPIAIGFIVGA 183

Query: 183 NILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAP 242
           NILAAGPFSGGSMNPARSFGPAVASG+F DNWIYWVGPLIGGGLAGL+YGNVFMH EHAP
Sbjct: 184 NILAAGPFSGGSMNPARSFGPAVASGDFHDNWIYWVGPLIGGGLAGLVYGNVFMHHEHAP 243

Query: 243 LSNDY 247
           LSN+Y
Sbjct: 244 LSNEY 248

Source: Quercus petraea

Species: Quercus petraea

Genus: Quercus

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549896|ref|XP_002515999.1| tonoplast intrinsic protein, putative [Ricinus communis] gi|223544904|gb|EEF46419.1| tonoplast intrinsic protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|350543338|gb|AEQ29858.1| aquaporin TIP2 [Malus prunifolia] Back     alignment and taxonomy information
>gi|292653543|gb|ADE34289.1| aquaporin TIP2;3 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|3249565|gb|AAC39480.1| aquaporin [Vernicia fordii] Back     alignment and taxonomy information
>gi|224054384|ref|XP_002298233.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] gi|118482171|gb|ABK93015.1| unknown [Populus trichocarpa] gi|118483958|gb|ABK93867.1| unknown [Populus trichocarpa] gi|118489414|gb|ABK96510.1| unknown [Populus trichocarpa x Populus deltoides] gi|222845491|gb|EEE83038.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1439609|gb|AAB04557.1| delta-tonoplast intrinsic protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|444300812|gb|AGD98715.1| aquaporin protein 12 [Camellia sinensis] Back     alignment and taxonomy information
>gi|12006841|gb|AAG44945.1|AF290618_1 putative delta TIP [Nicotiana glauca] Back     alignment and taxonomy information
>gi|118485017|gb|ABK94373.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2094977250 DELTA-TIP "delta tonoplast int 0.983 0.972 0.729 1.9e-90
TAIR|locus:2130883250 TIP2;2 "tonoplast intrinsic pr 0.991 0.98 0.654 3.3e-79
TAIR|locus:2168953250 TIP2;3 "tonoplast intrinsic pr 0.967 0.956 0.665 4.8e-78
TAIR|locus:2057906251 GAMMA-TIP "gamma tonoplast int 0.991 0.976 0.581 8e-69
TAIR|locus:2088867253 TIP2 "tonoplast intrinsic prot 0.870 0.849 0.625 1.7e-66
TAIR|locus:2116987252 TIP1;3 "tonoplast intrinsic pr 0.991 0.972 0.518 7.9e-62
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.878 0.809 0.513 4.2e-56
TAIR|locus:2030968267 BETA-TIP "beta-tonoplast intri 0.878 0.812 0.5 3.7e-55
TAIR|locus:2043505249 TIP4;1 "tonoplast intrinsic pr 0.971 0.963 0.459 1.3e-54
TAIR|locus:2099595256 TIP5;1 "tonoplast intrinsic pr 0.854 0.824 0.433 5e-44
TAIR|locus:2094977 DELTA-TIP "delta tonoplast integral protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 178/244 (72%), Positives = 196/244 (80%)

Query:     3 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICH 62
             +AFG FDDSFSL S +AYLAEFISTLLFVFAGVGSAIA+ K+T+DAALD  GLVAIA+CH
Sbjct:     4 VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCH 63

Query:    63 GFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 122
             GFALFVAVAIGANISGGHVNPAVTFGLA+GGQIT++TG+FYWIAQLLGS  A FLLK VT
Sbjct:    64 GFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVT 123

Query:   123 GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGA 182
             GGLAVPTH+                 TF LVYTVYATAADPKKGSLGTIAP+AIG IVGA
Sbjct:   124 GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGA 183

Query:   183 NILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFM-HSEHA 241
             NILAAGPFSGGSMNPARSFGPAVA+G+F  +W+YWV              NVFM  SEH 
Sbjct:   184 NILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHV 243

Query:   242 PLSN 245
             PL++
Sbjct:   244 PLAS 247
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;IDA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0015204 "urea transmembrane transporter activity" evidence=IGI
GO:0015840 "urea transport" evidence=IGI
GO:0009507 "chloroplast" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0015200 "methylammonium transmembrane transporter activity" evidence=IDA
GO:0051739 "ammonia transmembrane transporter activity" evidence=IGI
GO:0005618 "cell wall" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0000326 "protein storage vacuole" evidence=IDA
GO:0042807 "central vacuole" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116987 TIP1;3 "tonoplast intrinsic protein 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043505 TIP4;1 "tonoplast intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099595 TIP5;1 "tonoplast intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P33560TIP_ANTMANo assigned EC number0.77910.99590.984N/Ano
P24422TIP2_TOBACNo assigned EC number0.79750.98780.976N/Ano
P42067TIP1_MEDSANo assigned EC number0.61380.98380.9759N/Ano
Q9FGL2TIP23_ARATHNo assigned EC number0.74390.99590.984nono
Q6PQZ1AQP1_PIGNo assigned EC number0.42010.89470.8154yesno
Q84RL6TIP23_MAIZENo assigned EC number0.74080.99590.9919N/Ano
Q5Z6F0TIP22_ORYSJNo assigned EC number0.79090.97970.9758yesno
Q9N2J4AQP1_CANFANo assigned EC number0.42010.89470.8154yesno
Q9ATL3TIP44_MAIZENo assigned EC number0.50200.97970.9603N/Ano
Q7XA61TIP21_ORYSJNo assigned EC number0.74890.99590.9919nono
Q9ATL9TIP21_MAIZENo assigned EC number0.72170.99590.9879N/Ano
Q9FY14TIP1_MEDTRNo assigned EC number0.62190.98780.976N/Ano
P21653TIP1_TOBACNo assigned EC number0.79750.98780.976N/Ano
Q9ATL8TIP22_MAIZENo assigned EC number0.71371.00.988N/Ano
Q41951TIP21_ARATHNo assigned EC number0.84830.98380.972yesno
Q41975TIP22_ARATHNo assigned EC number0.75401.00.988nono
O64964TIP11_MAIZENo assigned EC number0.62600.98780.976N/Ano
Q9ATM0TIP12_MAIZENo assigned EC number0.60680.93110.9055N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00011331
SubName- Full=Putative uncharacterized protein; (247 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-116
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-105
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 6e-82
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-77
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 6e-64
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 3e-53
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-34
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-33
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 4e-29
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-27
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-27
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 4e-25
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 4e-14
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-05
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information 
 Score =  331 bits (851), Expect = e-116
 Identities = 192/246 (78%), Positives = 212/246 (86%), Gaps = 1/246 (0%)

Query: 3   IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICH 62
           I FG   DSFS+ S KAYL+EFI+TLLFVFAGVGSAIAF K+T+DAALDP+GLVA+A+ H
Sbjct: 4   IEFGSLGDSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAH 63

Query: 63  GFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 122
            FALFV V+I ANISGGH+NPAVT GLA+GG ITI+TG FYWIAQ LGSIVA  LL  VT
Sbjct: 64  AFALFVGVSIAANISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVT 123

Query: 123 GGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGA 182
            G +VPTH VAAG+GAIEGVVMEI++TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGA
Sbjct: 124 NGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGA 183

Query: 183 NILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHS-EHA 241
           NILAAGPFSGGSMNPARSFGPAV SG+F   WIYWVGPL+GG LAGLIYG+VF+ S   A
Sbjct: 184 NILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAAA 243

Query: 242 PLSNDY 247
           P S DY
Sbjct: 244 PTSEDY 249

Length = 250
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00184 296 aquaporin NIP1; Provisional 99.64
PLN00182283 putative aquaporin NIP4; Provisional 99.64
PLN00026 298 aquaporin NIP; Provisional 99.64
PLN00183274 putative aquaporin NIP7; Provisional 99.63
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.63
PLN00167 256 aquaporin TIP5; Provisional 99.54
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.54
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.53
PLN00166 250 aquaporin TIP2; Provisional 99.53
PRK05420 231 aquaporin Z; Provisional 99.5
PTZ00016 294 aquaglyceroporin; Provisional 99.49
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.4
PLN00027252 aquaporin TIP; Provisional 99.4
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.39
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.27
PRK11562268 nitrite transporter NirC; Provisional 92.38
PRK09713282 focB putative formate transporter; Provisional 87.66
PRK10805285 formate transporter; Provisional 85.73
COG2116265 FocA Formate/nitrite family of transporters [Inorg 85.11
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3e-53  Score=356.86  Aligned_cols=230  Identities=52%  Similarity=0.887  Sum_probs=209.4

Q ss_pred             cCCcCChhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH
Q 025817            8 FDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTF   87 (247)
Q Consensus         8 ~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTl   87 (247)
                      ..+..+++.+|++++||++|++++|++|++...+.+     ...+.+.+.+++.+|+++++.+++++++||||+|||||+
T Consensus         2 ~~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~-----~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~   76 (238)
T KOG0223|consen    2 SGELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK-----YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTL   76 (238)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHH
Confidence            456778999999999999999999999998876543     234567889999999999999999999999999999999


Q ss_pred             HHHHhCCCCcchhHHHHHHHhHHHHHHHHHHHHHhcCC----cCcccccCCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 025817           88 GLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADP  163 (247)
Q Consensus        88 ~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~  163 (247)
                      ++++.|++++.++..|+++|++|+++|+.+++.+.+.+    ......+.++.+..|+++.|++.||.|+++++++..|+
T Consensus        77 a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~  156 (238)
T KOG0223|consen   77 AFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDP  156 (238)
T ss_pred             HHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecC
Confidence            99999999999999999999999999999999988763    34556678889999999999999999999999977888


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHhhcCCCCCccCchhhhhhhcCcCCCCceeeeecccchHHHHHHHHHHHhhcCCCCCCC
Q 025817          164 KKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAPL  243 (247)
Q Consensus       164 ~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg~~~~~~~~~~~wvy~iap~~Ga~~a~~~~~~~~~~~~~~~~  243 (247)
                      |+.   .+.|+.||+++.+.+++++++||++|||||+|||++..++|+++|+||++|++|+++++++|+.++.+..+++.
T Consensus       157 ~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~~~  233 (238)
T KOG0223|consen  157 RRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDESEPT  233 (238)
T ss_pred             CCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCcccccc
Confidence            864   68999999999999999999999999999999999999999999999999999999999999999998855555


Q ss_pred             CC
Q 025817          244 SN  245 (247)
Q Consensus       244 ~~  245 (247)
                      ++
T Consensus       234 ~~  235 (238)
T KOG0223|consen  234 KS  235 (238)
T ss_pred             Cc
Confidence            44

>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 5e-30
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 6e-30
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 4e-29
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 5e-28
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 8e-27
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-26
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-25
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-25
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-25
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-25
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-25
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 3e-25
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 3e-25
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 4e-25
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 4e-25
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 5e-20
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 3e-13
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-12
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 9e-09
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-08
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 2e-08
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-08
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-08
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 2e-08
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 3e-08
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 7e-08
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-07
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 6e-07
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-06
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 5e-04
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure 
Iteration: 1

 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 120/207 (57%), Gaps = 11/207 (5%)
Query: 17  FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANI 76
           +KA  AEF++ L+FV   VGS I  N   ++  L P  +V I++C G ++   V    +I
Sbjct: 13  WKAVTAEFLAMLIFVLLSVGSTI--NWGGSENPL-PVDMVLISLCFGLSIATMVQCFGHI 69
Query: 77  SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
           SGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +VT     GGL V T +
Sbjct: 70  SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 129
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
                            TF LV+T++A+  D +    G++A +AIGF V    L A  ++
Sbjct: 130 GNLTAGHGLLVELII--TFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYT 186
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
           G SMNPARSFGPAV  GN++++WIYWV
Sbjct: 187 GASMNPARSFGPAVIMGNWENHWIYWV 213
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-93
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 5e-91
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 4e-88
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 8e-07
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 4e-88
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 2e-87
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-87
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 3e-85
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 4e-85
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 3e-06
2o9g_A234 Aquaporin Z; integral membrane protein, structural 9e-79
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 5e-77
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 8e-05
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-66
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 5e-41
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-38
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  277 bits (710), Expect = 1e-93
 Identities = 93/242 (38%), Positives = 136/242 (56%), Gaps = 7/242 (2%)

Query: 2   AIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAIC 61
                 F   ++   +KA  AEF++ L+FV   VGS I +          P  +V I++C
Sbjct: 37  RSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL---PVDMVLISLC 93

Query: 62  HGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV 121
            G ++   V    +ISGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +V
Sbjct: 94  FGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153

Query: 122 TGGLAVP---THNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGF 178
           T    V       V   + A  G+++E+IITF LV+T++A+  D K+  +     +AIGF
Sbjct: 154 TPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALAIGF 212

Query: 179 IVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHS 238
            V    L A  ++G SMNPARSFGPAV  GN++++WIYWVGP+IG  LAG +Y  VF   
Sbjct: 213 SVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 272

Query: 239 EH 240
             
Sbjct: 273 VE 274
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.67
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.55
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.47
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.45
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.44
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.44
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.42
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.41
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.41
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.4
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.38
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.37
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.33
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 88.47
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.4e-53  Score=358.37  Aligned_cols=220  Identities=41%  Similarity=0.696  Sum_probs=191.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhC
Q 025817           14 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGG   93 (247)
Q Consensus        14 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTl~~~l~g   93 (247)
                      ++.||++++||+||++|+++++++.....   ++.+.+..+++.+++++|+++++.+++++++||+|+|||||+++++.|
T Consensus         1 ~~~~r~~~aEfiGT~~lv~~g~g~~~~~~---~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g   77 (223)
T 3gd8_A            1 QAFWKAVTAEFLAMLIFVLLSLGSTINWG---GTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTR   77 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCTT---TTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcC
Confidence            46799999999999999999999886431   112234567899999999999999999999999999999999999999


Q ss_pred             CCCcchhHHHHHHHhHHHHHHHHHHHHHhcCC---cCcccccCCCCchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 025817           94 QITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGT  170 (247)
Q Consensus        94 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~  170 (247)
                      +++|++.+.|+++|++|+++|+.+++.++++.   ....+.+.++.+..++++.|+++|++|+++++.+. |+++...+.
T Consensus        78 ~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~-~~~~~~~~~  156 (223)
T 3gd8_A           78 KISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASC-DSKRTDVTG  156 (223)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHT-CTTCSCCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHh-ccccCCccC
Confidence            99999999999999999999999999887532   23345566778899999999999999999999984 444433445


Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCCccCchhhhhhhcCcCCCCceeeeecccchHHHHHHHHHHHhhcC
Q 025817          171 IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMH  237 (247)
Q Consensus       171 ~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg~~~~~~~~~~~wvy~iap~~Ga~~a~~~~~~~~~~  237 (247)
                      ..|+.||+.+...+...++.||++||||||||||++.++|+++|+||++|++|+++++++|++++.|
T Consensus       157 ~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          157 SIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence            7899999999888888878899999999999999999999999999999999999999999998764
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-39
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 3e-35
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 4e-29
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 2e-27
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  135 bits (341), Expect = 1e-39
 Identities = 90/224 (40%), Positives = 132/224 (58%), Gaps = 6/224 (2%)

Query: 17  FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS--GLVAIAICHGFALFVAVAIGA 74
           ++A +AEF++ +LF+F  +GSA+ F+          +    V +++  G ++        
Sbjct: 11  WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG 70

Query: 75  NISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHN--- 131
           +ISG H+NPAVT GL L  QI++L  I Y IAQ +G+IVA+ +L  +T  L   +     
Sbjct: 71  HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNA 130

Query: 132 VAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
           +A GV + +G+ +EII T  LV  V AT  D ++  LG   P+AIGF V    L A  ++
Sbjct: 131 LAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYT 189

Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVF 235
           G  +NPARSFG +V + NFQD+WI+WVGP IG  LA LIY  + 
Sbjct: 190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.53
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.43
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.4
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-51  Score=346.08  Aligned_cols=223  Identities=34%  Similarity=0.639  Sum_probs=196.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhC
Q 025817           14 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGG   93 (247)
Q Consensus        14 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTl~~~l~g   93 (247)
                      .++||++++||+||++++|+++++......       .+.+.+.+++++|+++++.++.++++||||+|||||+++++.|
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~-------~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g   74 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGS   74 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------CCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhcc
Confidence            578999999999999999999998753221       2245678899999999999999999999999999999999999


Q ss_pred             CCCcchhHHHHHHHhHHHHHHHHHHHHHhcCCcC---cccccCCCCchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 025817           94 QITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV---PTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGT  170 (247)
Q Consensus        94 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~  170 (247)
                      +++|++.+.|+++|++|+++|+++++.++++...   ....+.++.+..++++.|++.|++|+++++.+. |+++.....
T Consensus        75 ~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~-~~~~~~~~~  153 (234)
T d1ymga1          75 QMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY-DERRNGRLG  153 (234)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHH-CTTSCSCCC
T ss_pred             CCChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeee-cCCccCcCc
Confidence            9999999999999999999999999999875322   233456678899999999999999999999885 444444445


Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCCccCchhhhhhhcCcCCCCceeeeecccchHHHHHHHHHHHhhcCCCCCCCC
Q 025817          171 IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAPLS  244 (247)
Q Consensus       171 ~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~lg~~~~~~~~~~~wvy~iap~~Ga~~a~~~~~~~~~~~~~~~~~  244 (247)
                      ..++.+|+.+.+.....+++||+++||||||||++.+++|+++|+||++|++|+++++++|++++.|+.++.+|
T Consensus       154 ~~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~~~  227 (234)
T d1ymga1         154 SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSE  227 (234)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCHHH
T ss_pred             ceeEeehHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcchhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999888776543
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure