Citrus Sinensis ID: 025826

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MDVKKPASQENLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV
ccccccccccccccccccccccEEEEEccccEEEEEEEEEccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHcccccEEEEccccEEEEccccccccEEEEEEcccEEEEEEEccccEEEEccEEccccHHHHHHHHHHccccHHHHHHHHHccccccccEEEcccccccccccc
ccccccccccccccccccccccEEEEEccccHEEEEEEcccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHcccccccccccccccccEEEEEccccHHHHHHHHHHHHcccEccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEEEccccEEEEEEEccccEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHcccccccccccc
mdvkkpasqenlngdesesQISHLALDIGGSLIKVVYFLRsngsggsvddsgkksdpvlegrLHFAKFETSKIIDCLEFIRSKnlhlagfrhhdasasdktlikatgggayKFADLIKEKLgvvldkedemdCLVTGANFLLKAVHQEaftyvdgqkefvqidqndlypYLLVNIGsgvsmikvdgdgkferisgtsvgggtfwglgrlltncKSFDELLELSHQGNNRVIDMLVGdiyggseyskv
mdvkkpasqenlngdeSESQISHLALDIGGSLIKVVYFLRSNgsggsvddsgkksdPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFrhhdasasdktlIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIyggseyskv
MDVKKPASQENLNGDESESQISHLALDIGGSLIKVVYFLRSNgsggsvddsgkksdPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV
**********************HLALDIGGSLIKVVYFLR******************LEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYG*******
*******************QISHLALDIGGSLIKVVYFLRSN*************DPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFR***ASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSK*
******************SQISHLALDIGGSLIKVVYFLRSNG************DPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV
*****PASQENLNGDESESQISHLALDIGGSLIKVVYFLRSN*********GKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAG******SASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEY***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDVKKPASQENLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
Q8L5Y9 901 Pantothenate kinase 2 OS= no no 0.902 0.247 0.646 9e-84
O80765 383 Pantothenate kinase 1 OS= no no 0.910 0.587 0.703 4e-79
Q9NVE7 773 Pantothenate kinase 4 OS= yes no 0.834 0.266 0.466 2e-50
Q4R4U1 773 Pantothenate kinase 4 OS= N/A no 0.846 0.270 0.472 3e-50
Q5R5F8 773 Pantothenate kinase 4 OS= yes no 0.846 0.270 0.468 5e-49
Q923S8 773 Pantothenate kinase 4 OS= yes no 0.838 0.267 0.472 4e-46
Q80YV4 820 Pantothenate kinase 4 OS= yes no 0.838 0.252 0.472 7e-46
O74962 403 Pantothenate kinase OS=Sc yes no 0.870 0.533 0.469 6e-36
Q8R2W9 370 Pantothenate kinase 3 OS= no no 0.874 0.583 0.342 2e-29
Q9H999 370 Pantothenate kinase 3 OS= no no 0.874 0.583 0.342 3e-29
>sp|Q8L5Y9|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2 Back     alignment and function desciption
 Score =  310 bits (793), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 159/246 (64%), Positives = 185/246 (75%), Gaps = 23/246 (9%)

Query: 21  ISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGK-------------KSDPVLEGRLHFAK 67
           ISHLALDIGGSLIK++YF R        D   +             +S PVL GRLHF K
Sbjct: 77  ISHLALDIGGSLIKLLYFSRHEDYSNDDDKRKRTIKERLGITNGNLRSYPVLGGRLHFVK 136

Query: 68  FETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTL------IKATGGGAYKFADLIKEKL 121
           FET KI +CL+FI SK LH    R      S KTL      IK TGGGA+KFADL KE+L
Sbjct: 137 FETHKINECLDFIHSKQLH----RRDPYPWSSKTLPLGTGVIKVTGGGAFKFADLFKERL 192

Query: 122 GVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSM 181
           GV ++KEDEM CLV+GANFLLKA+  EAFT+++G+KEFVQID NDLYPYLLVN+GSGVS+
Sbjct: 193 GVSIEKEDEMHCLVSGANFLLKAIRHEAFTHMEGEKEFVQIDPNDLYPYLLVNVGSGVSI 252

Query: 182 IKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGG 241
           IKVDG+GKFER+SGT+VGGGT+WGLGRLLT CKSFDELLELS +G+N  IDMLVGDIYGG
Sbjct: 253 IKVDGEGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQKGDNSAIDMLVGDIYGG 312

Query: 242 SEYSKV 247
            +YSK+
Sbjct: 313 MDYSKI 318
Plays a role in the physiological regulation of the intracellular CoA concentration.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 3
>sp|O80765|PANK1_ARATH Pantothenate kinase 1 OS=Arabidopsis thaliana GN=COAA PE=2 SV=2 Back     alignment and function description
>sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1 Back     alignment and function description
>sp|Q4R4U1|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2 Back     alignment and function description
>sp|Q5R5F8|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1 Back     alignment and function description
>sp|Q923S8|PANK4_RAT Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1 Back     alignment and function description
>sp|Q80YV4|PANK4_MOUSE Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2 Back     alignment and function description
>sp|O74962|PANK_SCHPO Pantothenate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4B4.01c PE=1 SV=1 Back     alignment and function description
>sp|Q8R2W9|PANK3_MOUSE Pantothenate kinase 3 OS=Mus musculus GN=Pank3 PE=2 SV=1 Back     alignment and function description
>sp|Q9H999|PANK3_HUMAN Pantothenate kinase 3 OS=Homo sapiens GN=PANK3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
255568790 414 Pantothenate kinase, putative [Ricinus c 0.995 0.594 0.702 2e-98
297739056 419 unnamed protein product [Vitis vinifera] 0.910 0.536 0.752 2e-97
224107821 398 predicted protein [Populus trichocarpa] 0.947 0.587 0.724 2e-93
359473229 426 PREDICTED: LOW QUALITY PROTEIN: pantothe 0.910 0.528 0.714 8e-90
255540653 907 Pantothenate kinase, putative [Ricinus c 0.910 0.248 0.697 1e-89
224135815 872 predicted protein [Populus trichocarpa] 0.919 0.260 0.683 4e-89
357461955 893 Pantothenate kinase [Medicago truncatula 0.910 0.251 0.698 2e-88
449434931 397 PREDICTED: pantothenate kinase 2-like [C 0.927 0.576 0.696 7e-88
356567636 413 PREDICTED: pantothenate kinase 2-like [G 0.995 0.595 0.635 7e-88
225457017 906 PREDICTED: pantothenate kinase 2-like [V 0.910 0.248 0.677 1e-87
>gi|255568790|ref|XP_002525366.1| Pantothenate kinase, putative [Ricinus communis] gi|223535329|gb|EEF37004.1| Pantothenate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/259 (70%), Positives = 200/259 (77%), Gaps = 13/259 (5%)

Query: 1   MDVKKPASQENLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDP--- 57
           MD+K      N    +S  QISHLALDIGGSLIKVVY  R + +   ++     SD    
Sbjct: 1   MDLKDIRLDPNSESTQSIGQISHLALDIGGSLIKVVYLSRYSNNSADIEGESSSSDDDTL 60

Query: 58  ----------VLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATG 107
                     +LEGRLHFAKFETSKI DCLEFI SK LHL GF+ H+    D+  IKATG
Sbjct: 61  VLSNVNGEHHILEGRLHFAKFETSKINDCLEFISSKKLHLGGFQRHENPTKDRNFIKATG 120

Query: 108 GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDL 167
           GGAYKF D  KEKLG  LDKEDEMDCLV GANFLLKAVH EA+TY+DGQKEFVQID NDL
Sbjct: 121 GGAYKFTDFFKEKLGFSLDKEDEMDCLVAGANFLLKAVHHEAYTYMDGQKEFVQIDHNDL 180

Query: 168 YPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGN 227
           YPYLLVNIGSGVSMI+V+GDGKFER+SGTSVGGGTFWGLG+LLT CK FDELLELSHQGN
Sbjct: 181 YPYLLVNIGSGVSMIRVEGDGKFERVSGTSVGGGTFWGLGKLLTKCKCFDELLELSHQGN 240

Query: 228 NRVIDMLVGDIYGGSEYSK 246
           NRVIDMLVGDIYGG++YSK
Sbjct: 241 NRVIDMLVGDIYGGTDYSK 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739056|emb|CBI28545.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107821|ref|XP_002314614.1| predicted protein [Populus trichocarpa] gi|222863654|gb|EEF00785.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473229|ref|XP_002267027.2| PREDICTED: LOW QUALITY PROTEIN: pantothenate kinase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540653|ref|XP_002511391.1| Pantothenate kinase, putative [Ricinus communis] gi|223550506|gb|EEF51993.1| Pantothenate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224135815|ref|XP_002322167.1| predicted protein [Populus trichocarpa] gi|222869163|gb|EEF06294.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357461955|ref|XP_003601259.1| Pantothenate kinase [Medicago truncatula] gi|355490307|gb|AES71510.1| Pantothenate kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449434931|ref|XP_004135249.1| PREDICTED: pantothenate kinase 2-like [Cucumis sativus] gi|449521096|ref|XP_004167567.1| PREDICTED: pantothenate kinase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567636|ref|XP_003552023.1| PREDICTED: pantothenate kinase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|225457017|ref|XP_002279079.1| PREDICTED: pantothenate kinase 2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2195638 383 PANK1 "pantothenate kinase 1" 0.910 0.587 0.698 2.9e-80
TAIR|locus:2116490 901 PANK2 "pantothenate kinase 2" 0.902 0.247 0.646 1.3e-75
DICTYBASE|DDB_G0290401 685 DDB_G0290401 "pantothenate kin 0.846 0.305 0.469 1.2e-49
ASPGD|ASPL0000076011 420 panK [Emericella nidulans (tax 0.846 0.497 0.471 1.4e-48
ZFIN|ZDB-GENE-040426-1592 774 pank4 "pantothenate kinase 4" 0.838 0.267 0.476 2.8e-47
UNIPROTKB|G4NJ43 588 MGG_17976 "Uncharacterized pro 0.854 0.358 0.457 1.1e-46
UNIPROTKB|E1BV98 771 PANK4 "Uncharacterized protein 0.838 0.268 0.467 2.8e-46
POMBASE|SPBC4B4.01c 403 SPBC4B4.01c "fumble family pan 0.878 0.538 0.456 7.1e-45
UNIPROTKB|F1MLD0 773 PANK4 "Uncharacterized protein 0.838 0.267 0.463 7.9e-45
UNIPROTKB|I3LPY8 780 PANK4 "Uncharacterized protein 0.838 0.265 0.463 8.4e-45
TAIR|locus:2195638 PANK1 "pantothenate kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 160/229 (69%), Positives = 183/229 (79%)

Query:    19 SQISHLALDIGGSLIKVVYFLRSNXXXXXXXXXXXXXXPVLEGRLHFAKFETSKIIDCLE 78
             +QISHLALDIGG+LIK+VYF  +                V++GRL FAKFET KI DCLE
Sbjct:     4 TQISHLALDIGGTLIKLVYFSANGDYSEESRNGCS----VVKGRLCFAKFETRKIDDCLE 59

Query:    79 FIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGA 138
             FIR   LH +G +  +    DK  +KATGGGA+KFADL KEKLG++ DKEDEM  LV G 
Sbjct:    60 FIRFNILHHSGVQQPNGEGHDKLYVKATGGGAFKFADLFKEKLGILFDKEDEMCSLVGGV 119

Query:   139 NFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSV 198
             NFLLK V +EAFTY+DGQK+FV+ID NDLYPYLLVNIGSGVSMIKVDGDGK+ERISGTS+
Sbjct:   120 NFLLKTVPREAFTYLDGQKKFVEIDHNDLYPYLLVNIGSGVSMIKVDGDGKYERISGTSL 179

Query:   199 GGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 247
             GGGTF GLG+LLT CKSFDELLELSH GNNRVIDMLVGDIYGG++YSK+
Sbjct:   180 GGGTFLGLGKLLTKCKSFDELLELSHHGNNRVIDMLVGDIYGGTDYSKI 228
GO:0004594 "pantothenate kinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006085 "acetyl-CoA biosynthetic process" evidence=ISS
GO:0015937 "coenzyme A biosynthetic process" evidence=IEA;IDA
TAIR|locus:2116490 PANK2 "pantothenate kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290401 DDB_G0290401 "pantothenate kinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000076011 panK [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1592 pank4 "pantothenate kinase 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G4NJ43 MGG_17976 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV98 PANK4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPBC4B4.01c SPBC4B4.01c "fumble family pantothenate kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLD0 PANK4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPY8 PANK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1.330.914
3rd Layer2.7.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002724001
SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (406 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
PLN02920 398 PLN02920, PLN02920, pantothenate kinase 1 1e-142
PLN02902 876 PLN02902, PLN02902, pantothenate kinase 1e-119
pfam03630 329 pfam03630, Fumble, Fumble 1e-94
TIGR00555296 TIGR00555, panK_eukar, pantothenate kinase, eukary 2e-76
COG5146 342 COG5146, PanK, Pantothenate kinase, acetyl-CoA reg 2e-52
PTZ00297 1452 PTZ00297, PTZ00297, pantothenate kinase; Provision 5e-35
PRK13317 277 PRK13317, PRK13317, pantothenate kinase; Provision 3e-24
>gnl|CDD|215498 PLN02920, PLN02920, pantothenate kinase 1 Back     alignment and domain information 
 Score =  403 bits (1037), Expect = e-142
 Identities = 186/239 (77%), Positives = 198/239 (82%), Gaps = 4/239 (1%)

Query: 11  NLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKS--DPVLEGRLHFAKF 68
             +G+ S  QISHLALDIGGSLIK+VYF  S  SG S D     S     + GRLHFAKF
Sbjct: 8   EGDGNSSPIQISHLALDIGGSLIKLVYF--SRNSGDSEDPRNDSSVKSDGVNGRLHFAKF 65

Query: 69  ETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKE 128
           ET KI DCLEFI S  LH  GF+HH+    DK  IKATGGGAYKFADL KEKLG+ LDKE
Sbjct: 66  ETRKINDCLEFISSNKLHHGGFQHHENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKE 125

Query: 129 DEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQIDQNDLYPYLLVNIGSGVSMIKVDGDG 188
           DEMDCLVTGANFLLKAVH EAFTY+DGQKEFVQID NDLYPYLLVNIGSGVSMIKVDGDG
Sbjct: 126 DEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHNDLYPYLLVNIGSGVSMIKVDGDG 185

Query: 189 KFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYSKV 247
           KFER+SGTSVGGGTFWGLG+LLT CKSFDELLELSHQGNNRVIDMLVGDIYGG +YSK+
Sbjct: 186 KFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKI 244

Length = 398
>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase Back     alignment and domain information
>gnl|CDD|217646 pfam03630, Fumble, Fumble Back     alignment and domain information
>gnl|CDD|233021 TIGR00555, panK_eukar, pantothenate kinase, eukaryotic/staphyloccocal type Back     alignment and domain information
>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional Back     alignment and domain information
>gnl|CDD|237346 PRK13317, PRK13317, pantothenate kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
KOG2201 371 consensus Pantothenate kinase PanK and related pro 100.0
PLN02920 398 pantothenate kinase 1 100.0
PLN02902 876 pantothenate kinase 100.0
PF03630 341 Fumble: Fumble ; InterPro: IPR004567 Pantothenate 100.0
PTZ00297 1452 pantothenate kinase; Provisional 100.0
COG5146 342 PanK Pantothenate kinase, acetyl-CoA regulated [Co 100.0
TIGR00555 279 panK_eukar pantothenate kinase, eukaryotic/staphyl 100.0
PRK13317 277 pantothenate kinase; Provisional 100.0
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 98.99
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 97.46
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 96.77
PRK14101 638 bifunctional glucokinase/RpiR family transcription 96.76
PRK12408 336 glucokinase; Provisional 96.42
PRK00292 316 glk glucokinase; Provisional 96.37
PF01869271 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In 96.31
PRK13318258 pantothenate kinase; Reviewed 95.95
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 95.55
TIGR00744 318 ROK_glcA_fam ROK family protein (putative glucokin 95.49
COG1940 314 NagC Transcriptional regulator/sugar kinase [Trans 94.99
PF02685 316 Glucokinase: Glucokinase; InterPro: IPR003836 Gluc 94.24
PRK13321256 pantothenate kinase; Reviewed 94.13
smart0073299 YqgFc Likely ribonuclease with RNase H fold. YqgF 93.1
PTZ00288 405 glucokinase 1; Provisional 93.0
PRK09557301 fructokinase; Reviewed 92.77
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 92.38
TIGR00749 316 glk glucokinase, proteobacterial type. This model 92.32
PRK13320244 pantothenate kinase; Reviewed 91.78
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 91.41
PRK09698302 D-allose kinase; Provisional 91.23
PRK13326262 pantothenate kinase; Reviewed 89.2
PRK13331251 pantothenate kinase; Reviewed 89.01
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 88.97
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 88.52
PRK13310 303 N-acetyl-D-glucosamine kinase; Provisional 88.07
TIGR00671243 baf pantothenate kinase, type III. This model desc 87.64
PRK13311256 N-acetyl-D-glucosamine kinase; Provisional 87.29
PF05378176 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r 87.29
PRK13324258 pantothenate kinase; Reviewed 84.87
PF00480179 ROK: ROK family; InterPro: IPR000600 A family of b 84.78
PRK05082291 N-acetylmannosamine kinase; Provisional 82.41
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 82.02
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-76  Score=541.38  Aligned_cols=227  Identities=54%  Similarity=0.886  Sum_probs=196.3

Q ss_pred             CCCCCCCCeEEEEcCcceeEEEEEeecCCCCCCcc-----CCCCCCCCCCCCeEEEEEeeccCHHHHHHHHHhhcccccC
Q 025826           15 DESESQISHLALDIGGSLIKVVYFLRSNGSGGSVD-----DSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAG   89 (247)
Q Consensus        15 ~~~~~~~~~~giDIGGSL~KlvYf~~~~~~~~~~~-----~~~~~~~~~~~g~l~F~~F~t~~i~~~i~fi~~~~~~~~~   89 (247)
                      ++ .+.++|||+||||||+|+|||++.+....++.     ....+..+...+||+|++|++.+|+.|++||+.+..+...
T Consensus        17 ~~-~~~~~~~~~DigGtl~KlvY~s~~~~~~~~~~~~~~~n~~~~~~~~~~~rl~~~~~e~~~~~~~L~Fi~~~~~~~~~   95 (371)
T KOG2201|consen   17 NN-KPMISHFAMDIGGTLVKLVYFSPVDISPEEEESEVILNGAYGKTGYRDGRLHFINFETFKIDGCLNFIRFNITDHPV   95 (371)
T ss_pred             cc-cccCceEEEecCCcEEEEEEEecCCCCcchhhhhcccccccccccccccEEEEEEeeecCccchhHHhhcchhhccc
Confidence            45 78899999999999999999999886332211     1222334568899999999999999999999987655421


Q ss_pred             ccccCCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHhhcCCcceEeeCCCeeeee----cCCC
Q 025826           90 FRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKAVHQEAFTYVDGQKEFVQ----IDQN  165 (247)
Q Consensus        90 ~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~~i~~e~f~~~~~~~~~~~----~~~~  165 (247)
                          ++.....++|+|||||||||+++|++++++++.|+|||+|||+|++||++++|.|||||.+...+...    .+.+
T Consensus        96 ----k~~~~~~~~i~aTGGGA~Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d  171 (371)
T KOG2201|consen   96 ----KNFSKLTTVICATGGGAYKFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLD  171 (371)
T ss_pred             ----cccccceeEEEEeCCcceeHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccC
Confidence                11111247899999999999999999999999999999999999999999999999999988654321    2235


Q ss_pred             CCccEEEEecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHHHhCCCCCcCceEeeeecCCCCCc
Q 025826          166 DLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVIDMLVGDIYGGSEYS  245 (247)
Q Consensus       166 ~~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~lA~~Gd~~~vDmlV~DIYGg~dY~  245 (247)
                      ++||||||||||||||+||++|++|+||||||||||||||||+|||||++|||||+||++|||++|||||+||||| +|+
T Consensus       172 ~~yPyLLVNIGSGVSIlkV~~~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg-~y~  250 (371)
T KOG2201|consen  172 SPYPYLLVNIGSGVSILKVDGPDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGG-DYS  250 (371)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCc-cHh
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999998 899


Q ss_pred             CC
Q 025826          246 KV  247 (247)
Q Consensus       246 ki  247 (247)
                      ++
T Consensus       251 ~f  252 (371)
T KOG2201|consen  251 RF  252 (371)
T ss_pred             hc
Confidence            75

>PLN02920 pantothenate kinase 1 Back     alignment and domain information
>PLN02902 pantothenate kinase Back     alignment and domain information
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism] Back     alignment and domain information
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>PRK12408 glucokinase; Provisional Back     alignment and domain information
>PRK00292 glk glucokinase; Provisional Back     alignment and domain information
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2 Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>smart00732 YqgFc Likely ribonuclease with RNase H fold Back     alignment and domain information
>PTZ00288 glucokinase 1; Provisional Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>TIGR00749 glk glucokinase, proteobacterial type Back     alignment and domain information
>PRK13320 pantothenate kinase; Reviewed Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PRK09698 D-allose kinase; Provisional Back     alignment and domain information
>PRK13326 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK13331 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional Back     alignment and domain information
>TIGR00671 baf pantothenate kinase, type III Back     alignment and domain information
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional Back     alignment and domain information
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family Back     alignment and domain information
>PRK13324 pantothenate kinase; Reviewed Back     alignment and domain information
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames [] Back     alignment and domain information
>PRK05082 N-acetylmannosamine kinase; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2i7p_A 362 Crystal Structure Of Human Pank3 In Complex With Ac 4e-28
3sms_A 382 Human Pantothenate Kinase 3 In Complex With A Panto 5e-28
3mk6_A 376 Substrate And Inhibitor Binding To Pank Length = 37 5e-28
3smp_A 386 Monoclinic Crystal Structure Of Human Pantothenate 3e-25
2i7n_A 360 Crystal Structure Of Human Pank1 Alpha: The Catalyt 2e-24
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa Length = 362 Back     alignment and structure 
Iteration: 1

 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 18/189 (9%)
Query: 60  EGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKE 119
            G LHF +F T  +   ++  R KN            ++ +T++ ATGGGAYKF    + 
Sbjct: 73  RGNLHFIRFPTQDLPTFIQMGRDKNF-----------STLQTVLCATGGGAYKFEKDFRT 121
Query: 120 KLGVVLDKEDEMDCLVTGANFLLKAV---HQEAFTYVDGQK----EFVQIDQNDLYPYLL 172
              + L K DE+DCLV G  ++         E + + +  +    + +  + +D YP L+
Sbjct: 122 IGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLV 181
Query: 173 VNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSHQGNNRVID 232
           VNIGSGVS++ V     ++R++GTS+GGGTF GL  LLT C+SF+E LE++ +G++   D
Sbjct: 182 VNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQAD 241
Query: 233 MLVGDIYGG 241
            LV DIYGG
Sbjct: 242 KLVRDIYGG 250
>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate Analog Length = 382 Back     alignment and structure
>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank Length = 376 Back     alignment and structure
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase 1 Alpha Length = 386 Back     alignment and structure
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core Domain In Complex With Accoa Length = 360 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2i7n_A 360 Pantothenate kinase 1; PANK, transferase; HET: ACO 5e-66
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 9e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Length = 360 Back     alignment and structure
 Score =  207 bits (528), Expect = 5e-66
 Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 47/258 (18%)

Query: 21  ISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPV---------------------- 58
                +DIGG+L+K+VYF   + +     +  +    +                      
Sbjct: 3   FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLEL 62

Query: 59  -------LEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAY 111
                   +G LHF +F +  +   ++    KN             S  T + ATGGGA+
Sbjct: 63  KNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFS-----------SLHTTLCATGGGAF 111

Query: 112 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKA---VHQEAFTYVDGQK----EFVQIDQ 164
           KF +  +    + L K DE+DCL+ G  ++         E + + +       +      
Sbjct: 112 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCL 171

Query: 165 NDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLELSH 224
           ++ YP LLVN+GSGVS++ V     ++R++GTS+GGGTF GL  LLT C++F+E LE++ 
Sbjct: 172 DNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAA 231

Query: 225 QGNNRVIDMLVGDIYGGS 242
           +G++  +D LV DIYGG 
Sbjct: 232 KGDSTNVDKLVKDIYGGD 249
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Length = 287 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
2i7n_A 360 Pantothenate kinase 1; PANK, transferase; HET: ACO 100.0
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 100.0
1hux_A270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 98.5
4ehu_A 276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 98.27
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 96.76
2ch5_A 347 NAGK protein; transferase, N-acetylglucosamine, gl 96.51
2ivn_A 330 O-sialoglycoprotein endopeptidase; UP1 keops compl 96.37
3vgl_A 321 Glucokinase; ROK family, transferase; HET: BGC ANP 96.34
2aa4_A289 Mannac kinase, putative N-acetylmannosamine kinase 96.27
3epq_A302 Putative fructokinase; SCRK, ADP binding, PSI2, MC 95.89
1saz_A 381 Probable butyrate kinase 2; askha (acetate and sug 95.65
1z05_A 429 Transcriptional regulator, ROK family; structural 95.61
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 95.46
3djc_A266 Type III pantothenate kinase; structural genomics, 95.45
2qm1_A 326 Glucokinase; alpha-beta structure, putative helix- 95.38
2ap1_A 327 Putative regulator protein; zinc binding protein, 95.27
3vov_A302 Glucokinase, hexokinase; ROK, sugar kinase, transf 95.24
1z6r_A 406 MLC protein; transcriptional repressor, ROK family 95.03
3bex_A249 Type III pantothenate kinase; actin-like fold, ATP 95.01
1sz2_A 332 Glucokinase, glucose kinase; ATP-dependent, glucos 94.71
2e2o_A 299 Hexokinase; acetate and sugar kinases, HSP70, acti 94.52
4htl_A297 Beta-glucoside kinase; structural genomics, sugar 94.35
1zbs_A 291 Hypothetical protein PG1100; alpha-beta protein., 94.07
4db3_A 327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 93.75
3mcp_A 366 Glucokinase; structural genomics, joint center for 93.44
2hoe_A380 N-acetylglucosamine kinase; TM1224, structural gen 93.34
1woq_A267 Inorganic polyphosphate/ATP-glucomannokinase; tran 92.53
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 92.33
2yhw_A 343 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N 91.97
1zc6_A305 Probable N-acetylglucosamine kinase; NESG, Q7NU07_ 89.99
1zxo_A 291 Conserved hypothetical protein Q8A1P1; NESG, BTR25 88.26
3htv_A310 D-allose kinase, allokinase; NP_418508.1, structur 88.04
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-64  Score=472.91  Aligned_cols=217  Identities=35%  Similarity=0.636  Sum_probs=171.2

Q ss_pred             CCCCeEEEEcCcceeEEEEEeecCCC----CCC----cc------------CCCCCCC---------CCCCCeEEEEEee
Q 025826           19 SQISHLALDIGGSLIKVVYFLRSNGS----GGS----VD------------DSGKKSD---------PVLEGRLHFAKFE   69 (247)
Q Consensus        19 ~~~~~~giDIGGSL~KlvYf~~~~~~----~~~----~~------------~~~~~~~---------~~~~g~l~F~~F~   69 (247)
                      +++|||||||||||+|||||+|.+..    .+.    ++            .+|.|+.         ..++|+|||++||
T Consensus         1 ~~~~~~~iDiGGtL~Klvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~F~~f~   80 (360)
T 2i7n_A            1 PPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFP   80 (360)
T ss_dssp             --CCEEEEEECSSEEEEEEEEECC------------CCSHHHHHHHCSBCSSSCEECGGGCEEEEEC--CEEEEEEEEEE
T ss_pred             CCCCEEEEEeCCceEEEEEEeecCCccccccccccccccchhhccccccccccCccccccccccccccCcCceEEEEEee
Confidence            46899999999999999999996521    110    00            2344442         2346999999999


Q ss_pred             ccCHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHH---hhcC
Q 025826           70 TSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLL---KAVH  146 (247)
Q Consensus        70 t~~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl---~~i~  146 (247)
                      |++|++|++|++++++...           ...|++|||||+||++.|++++++++.|+|||+|+++|++||+   .++|
T Consensus        81 t~~~~~~l~~~~~~~~~~~-----------~~~i~aTGgGa~k~~~~~~~~~g~~~~k~dE~~c~~~G~~~l~~~~~~~~  149 (360)
T 2i7n_A           81 SCAMHRFIQMGSEKNFSSL-----------HTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGK  149 (360)
T ss_dssp             GGGHHHHHHHC-----------------------CEESTTTTGGGTTC-------CCBCCHHHHHHHHHHHHHHHCBTTB
T ss_pred             hhhHHHHHHHHHHcCCCcc-----------CcEEEEECCcHHHHHHHHHHHhCCCcceecHHHHHHHHHHHHhcccccCC
Confidence            9999999999988765421           2579999999999999999999999999999999999999999   5789


Q ss_pred             CcceEeeCCCe----eeeecCCCCCccEEEEecCCceEEEEEeCCCceEEeeccccCchhHHhhhhhhcCCCCHHHHHHH
Q 025826          147 QEAFTYVDGQK----EFVQIDQNDLYPYLLVNIGSGVSMIKVDGDGKFERISGTSVGGGTFWGLGRLLTNCKSFDELLEL  222 (247)
Q Consensus       147 ~e~f~~~~~~~----~~~~~~~~~~~PyLlVNIGSGvSi~kv~~~~~~~RVgGssiGGGT~~GL~~LLtg~~~fdeil~l  222 (247)
                      .|+|+|++...    ...+.+..++||||||||||||||++|+++++|+|||||++||||||||++||||+.||||+++|
T Consensus       150 ~e~~t~~~~~~~~~~~~~~~~~~~~~PyllVnIGsGvSiikv~~~~~f~rvgG~siGGGTflGL~~lLtg~~~~dEl~~l  229 (360)
T 2i7n_A          150 PECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEM  229 (360)
T ss_dssp             CSEEEEESTTCTTTCEEEEECCSSCCSEEEEEESSSEEEEEEEETTEEEEEEEESCSHHHHHHHHHHHHCCCSHHHHHHH
T ss_pred             ceeEEeccccccccccccccccccCCceEEEEeCCCcEEEEEcCCCCEEEeccccCccHhHHHHHHHHhCCCCHHHHHHH
Confidence            99999987542    23455667889999999999999999999889999999999999999999999999999999999


Q ss_pred             HhCCCCCcCceEeeeecCCCCCcCC
Q 025826          223 SHQGNNRVIDMLVGDIYGGSEYSKV  247 (247)
Q Consensus       223 A~~Gd~~~vDmlV~DIYGg~dY~ki  247 (247)
                      |++||+++|||+|+||||+ +|+++
T Consensus       230 A~~Gd~~~vDllV~DIYg~-~y~~~  253 (360)
T 2i7n_A          230 AAKGDSTNVDKLVKDIYGG-DYERF  253 (360)
T ss_dssp             HHHCCGGGTSEEHHHHHSS-CBGGG
T ss_pred             HHcCCCCcccceeeecccC-ccccc
Confidence            9999999999999999996 99864
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* Back     alignment and structure
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* Back     alignment and structure
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} Back     alignment and structure
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A Back     alignment and structure
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d2i7na1146 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 1e-36
d2i7na2 212 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 5e-33
d2ewsa1267 c.55.1.14 (A:1-267) Type II pantothenate kinase, C 3e-13
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-36
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 40/149 (26%)

Query: 24  LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLE----------------------- 60
             +DIGG+L+K+VYF   + +     +  +    + +                       
Sbjct: 4   FGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNL 63

Query: 61  ------GRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFA 114
                 G LHF +F +  +   ++    KN             S  T + ATGGGA+KF 
Sbjct: 64  TMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFS-----------SLHTTLCATGGGAFKFE 112

Query: 115 DLIKEKLGVVLDKEDEMDCLVTGANFLLK 143
           +  +    + L K DE+DCL+ G  ++  
Sbjct: 113 EDFRMIADLQLHKLDELDCLIQGLLYVDS 141
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} Length = 267 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d2i7na1146 Pantothenate kinase 1, PANK1 {Human (Homo sapiens) 100.0
d2i7na2 212 Pantothenate kinase 1, PANK1 {Human (Homo sapiens) 99.95
d2ewsa1267 Type II pantothenate kinase, CoaW {Staphylococcus 99.57
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 98.41
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 96.74
d1xc3a1118 Putative fructokinase YhdR {Bacillus subtilis [Tax 96.36
d2gupa1114 Hypothetical protein SP2142 {Streptococcus pneumon 93.13
d2ap1a2117 Putative regulator protein YcfX {Salmonella typhim 92.31
d1sz2a1319 Glucokinase Glk {Escherichia coli [TaxId: 562]} 89.74
d2aa4a1119 N-acetylmannosamine kinase NanK {Escherichia coli 88.1
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 86.01
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=255.60  Aligned_cols=112  Identities=30%  Similarity=0.534  Sum_probs=76.1

Q ss_pred             CCeEEEEcCcceeEEEEEeecCCCCCC--------cc------------CCCCCC---------CCCCCCeEEEEEeecc
Q 025826           21 ISHLALDIGGSLIKVVYFLRSNGSGGS--------VD------------DSGKKS---------DPVLEGRLHFAKFETS   71 (247)
Q Consensus        21 ~~~~giDIGGSL~KlvYf~~~~~~~~~--------~~------------~~~~~~---------~~~~~g~l~F~~F~t~   71 (247)
                      +|||||||||||||||||+|.+.....        .+            .++.++         .+..+|+|||++|||+
T Consensus         1 ~p~faiDIGGSL~KlVYfsp~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~LhF~kFeT~   80 (146)
T d2i7na1           1 FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSC   80 (146)
T ss_dssp             CCEEEEEECSSEEEEEEEEECC------------CCSHHHHHHHCSBCSSSCEECGGGCEEEEEC--CEEEEEEEEEEGG
T ss_pred             CCeEEEEeCCceEEEEEEecCCCccccccccchhhhhhhhhccccccccccCCcchhhhhccccccCCCceEEEEEeehh
Confidence            589999999999999999987642110        00            122222         1345799999999999


Q ss_pred             CHHHHHHHHHhhcccccCccccCCCCCCceEEEEecCCcccchHHHHHHhCCccceehhhhhhhhhHHHHHh
Q 025826           72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLK  143 (247)
Q Consensus        72 ~i~~~i~fi~~~~~~~~~~~~~~~~~~~~~~i~~TGGga~k~~~~~~~~lg~~~~k~dEm~cli~G~~fLl~  143 (247)
                      +|++|++|+++++++..           ..+|+|||||||||+++|++++|+++.|+|||+|||+|++||.+
T Consensus        81 ~i~~~l~fi~~~~~~~~-----------~~~I~ATGGGA~Kf~~~~~~~Lgv~v~k~DEM~cLI~Gl~Fl~~  141 (146)
T d2i7na1          81 AMHRFIQMGSEKNFSSL-----------HTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDS  141 (146)
T ss_dssp             GHHHHHHHC-----------------------CEESTTTTGGGTTC-------CCBCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCCC-----------CcEEEEeCccHHHHHHHHHHHcCCceEeccHHHHHHHHHHHHHh
Confidence            99999999999876532           36799999999999999999999999999999999999999986
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure