Citrus Sinensis ID: 025827

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYTGRQF
cHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccccccccccccccccEEEEccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEEEEEccccccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEcccccccccccccccccccEEEEEEEccccEEEEccccccccccccEEEcccc
cHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccEcccccccccccccEEcccEEEEEEEEccccEEEEccccccccccccEcccccc
MAILGYIIIALFTVFKAAvgkgagwtnahatfygggdasgtmggacgygnlysqgygtnTAAVSTALFnnglncgacyaikcvndnrwclpgsiivtatnfcppnfalsntnggwcnpplhhfdlsqpVFLKIAQYKAGIVPVQYRRVAckksggirftingHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRnwgqnwqsnsylnGQALSFKvttsdgrtvisnnvapanwnfgqtytgrqf
MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISnnvapanwnfgqtytgrqf
MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYgggdasgtmggacgYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYTGRQF
**ILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTY*****
*AILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVN**RWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYTGRQF
MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYTGRQF
MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYT****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYTGRQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
O80622253 Expansin-A15 OS=Arabidops yes no 0.995 0.972 0.776 1e-111
Q9FMA0255 Expansin-A14 OS=Arabidops no no 1.0 0.968 0.741 1e-109
Q9C554250 Expansin-A1 OS=Arabidopsi no no 1.0 0.988 0.759 1e-109
O22874253 Expansin-A8 OS=Arabidopsi no no 0.995 0.972 0.742 1e-105
Q9LDR9249 Expansin-A10 OS=Arabidops no no 1.0 0.991 0.766 1e-105
Q40636251 Expansin-A2 OS=Oryza sati yes no 1.0 0.984 0.689 1e-101
Q0DHB7246 Expansin-A4 OS=Oryza sati no no 0.995 1.0 0.700 1e-101
A2Y5R6246 Expansin-A4 OS=Oryza sati N/A no 0.995 1.0 0.700 1e-101
O48818257 Expansin-A4 OS=Arabidopsi no no 1.0 0.961 0.690 1e-100
Q9M2S9260 Expansin-A16 OS=Arabidops no no 1.0 0.95 0.678 1e-100
>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2 Back     alignment and function desciption
 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/251 (77%), Positives = 217/251 (86%), Gaps = 5/251 (1%)

Query: 1   MAILGYIIIALFTVFKAAV----GKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGY 56
           M  +G + IALF  F A V    G  AGW NAHATFYGG DASGTMGGACGYGNLYSQGY
Sbjct: 3   MGKMGLLGIALF-CFAAMVCSVHGYDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGY 61

Query: 57  GTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWC 116
           GTNTAA+STALFNNGL+CGAC+ IKC +D  WCLPG+IIVTATNFCPPN AL N  GGWC
Sbjct: 62  GTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWC 121

Query: 117 NPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGG 176
           NPPLHHFDLSQPVF +IAQYKAG+VPV YRRV C + GGIRFTINGHSYFNLVL+TNVGG
Sbjct: 122 NPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGG 181

Query: 177 AGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANW 236
           AGDV +V++KGS+T WQ +SRNWGQNWQSN+ LNGQALSFKVT SDGRTV+SNN+APA+W
Sbjct: 182 AGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241

Query: 237 NFGQTYTGRQF 247
           +FGQT+TGRQF
Sbjct: 242 SFGQTFTGRQF 252
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FMA0|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1 Back     alignment and function description
>sp|Q9C554|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1 Back     alignment and function description
>sp|O22874|EXPA8_ARATH Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1 Back     alignment and function description
>sp|Q9LDR9|EXP10_ARATH Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1 Back     alignment and function description
>sp|Q40636|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|A2Y5R6|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|O48818|EXPA4_ARATH Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1 Back     alignment and function description
>sp|Q9M2S9|EXP16_ARATH Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
359478822 557 PREDICTED: uncharacterized protein LOC10 1.0 0.443 0.850 1e-124
147852565247 hypothetical protein VITISV_024594 [Viti 1.0 1.0 0.850 1e-121
255564788247 Alpha-expansin 1 precursor, putative [Ri 1.0 1.0 0.825 1e-119
224052849247 hypothetical protein POPTRDRAFT_547568 [ 1.0 1.0 0.850 1e-119
429326530247 expansin protein [Populus tomentosa] 1.0 1.0 0.834 1e-117
21615409248 alpha-expansin 4 [Cicer arietinum] 1.0 0.995 0.789 1e-116
357474905284 Expansin [Medicago truncatula] gi|355508 1.0 0.869 0.793 1e-115
388492954248 unknown [Medicago truncatula] 1.0 0.995 0.793 1e-114
451963244248 alpha-expansin 1 [Ammopiptanthus nanus] 1.0 0.995 0.797 1e-114
451963246248 expansin 2 [Ammopiptanthus nanus] 1.0 0.995 0.785 1e-113
>gi|359478822|ref|XP_002285773.2| PREDICTED: uncharacterized protein LOC100267326 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/247 (85%), Positives = 226/247 (91%)

Query: 1   MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 60
           M  LGYII+AL T  K+  G G GW+NAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT
Sbjct: 311 MDFLGYIIVALLTGLKSVEGFGGGWSNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 370

Query: 61  AAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPL 120
           AA+STALFNNGL+CGACY +KCVND RWCLPGSI VTATNFCPPN AL+N  GGWCNPPL
Sbjct: 371 AALSTALFNNGLSCGACYEVKCVNDKRWCLPGSITVTATNFCPPNNALTNNAGGWCNPPL 430

Query: 121 HHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDV 180
            HFDLSQPVF  IAQYKAGIVPVQYRRVACKK+GGIRFT+NGHSYFNLVLITNVGGAGDV
Sbjct: 431 QHFDLSQPVFQHIAQYKAGIVPVQYRRVACKKTGGIRFTVNGHSYFNLVLITNVGGAGDV 490

Query: 181 VAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQ 240
           V+VSIKGSKT WQA+SRNWGQNWQSN+YLNGQALSFKVTTSDGR+V+SNNVAP NW+FGQ
Sbjct: 491 VSVSIKGSKTSWQAMSRNWGQNWQSNTYLNGQALSFKVTTSDGRSVVSNNVAPPNWDFGQ 550

Query: 241 TYTGRQF 247
           T+ GRQF
Sbjct: 551 TFNGRQF 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147852565|emb|CAN82746.1| hypothetical protein VITISV_024594 [Vitis vinifera] gi|297746516|emb|CBI16572.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564788|ref|XP_002523388.1| Alpha-expansin 1 precursor, putative [Ricinus communis] gi|223537338|gb|EEF38967.1| Alpha-expansin 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224052849|ref|XP_002297611.1| hypothetical protein POPTRDRAFT_547568 [Populus trichocarpa] gi|222844869|gb|EEE82416.1| hypothetical protein POPTRDRAFT_547568 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|429326530|gb|AFZ78605.1| expansin protein [Populus tomentosa] Back     alignment and taxonomy information
>gi|21615409|emb|CAD33924.1| alpha-expansin 4 [Cicer arietinum] Back     alignment and taxonomy information
>gi|357474905|ref|XP_003607738.1| Expansin [Medicago truncatula] gi|355508793|gb|AES89935.1| Expansin [Medicago truncatula] Back     alignment and taxonomy information
>gi|388492954|gb|AFK34543.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|451963244|gb|AGF90535.1| alpha-expansin 1 [Ammopiptanthus nanus] Back     alignment and taxonomy information
>gi|451963246|gb|AGF90536.1| expansin 2 [Ammopiptanthus nanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.995 0.972 0.725 3.4e-100
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 1.0 0.953 0.709 7.1e-100
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 1.0 0.968 0.689 1.5e-97
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.983 0.883 0.706 5.2e-97
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.987 0.964 0.696 3e-94
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.991 0.949 0.626 4.6e-89
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.995 0.957 0.646 5.9e-89
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 1.0 0.95 0.627 1.2e-88
TAIR|locus:2153569255 EXPA2 "expansin A2" [Arabidops 0.955 0.925 0.649 2.3e-87
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.927 0.874 0.658 6.2e-85
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 182/251 (72%), Positives = 204/251 (81%)

Query:     1 MAILGYIIIALFTVFKAAV----GKGAGWTNAHATFYXXXXXXXXXXXXXXYGNLYSQGY 56
             M  +G + IALF  F A V    G  AGW NAHATFY              YGNLYSQGY
Sbjct:     3 MGKMGLLGIALFC-FAAMVCSVHGYDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGY 61

Query:    57 GTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWC 116
             GTNTAA+STALFNNGL+CGAC+ IKC +D  WCLPG+IIVTATNFCPPN AL N  GGWC
Sbjct:    62 GTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWC 121

Query:   117 NPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGG 176
             NPPLHHFDLSQPVF +IAQYKAG+VPV YRRV C + GGIRFTINGHSYFNLVL+TNVGG
Sbjct:   122 NPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGG 181

Query:   177 AGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANW 236
             AGDV +V++KGS+T WQ +SRNWGQNWQSN+ LNGQALSFKVT SDGRTV+SNN+APA+W
Sbjct:   182 AGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241

Query:   237 NFGQTYTGRQF 247
             +FGQT+TGRQF
Sbjct:   242 SFGQTFTGRQF 252
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
GO:0006949 "syncytium formation" evidence=IEP
GO:0010089 "xylem development" evidence=RCA
GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80622EXP15_ARATHNo assigned EC number0.77680.99590.9723yesno
Q38864EXPA5_ARATHNo assigned EC number0.75440.87040.8431nono
Q38866EXPA2_ARATHNo assigned EC number0.70460.95540.9254nono
Q9FMA0EXP14_ARATHNo assigned EC number0.74101.00.9686nono
A2Y5R6EXPA4_ORYSINo assigned EC number0.70040.99591.0N/Ano
O22874EXPA8_ARATHNo assigned EC number0.74290.99590.9723nono
Q9C554EXPA1_ARATHNo assigned EC number0.75901.00.988nono
Q40636EXPA2_ORYSJNo assigned EC number0.68921.00.9840yesno
Q0DHB7EXPA4_ORYSJNo assigned EC number0.70040.99591.0nono
Q9LDR9EXP10_ARATHNo assigned EC number0.76611.00.9919nono
Q852A1EXPA7_ORYSJNo assigned EC number0.70860.91490.8560nono
Q4PNY1EXP11_ORYSJNo assigned EC number0.70640.87850.875nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrEXPA10
expansin A (247 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-150
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-122
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 2e-51
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 1e-37
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 3e-25
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 5e-23
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 0.001
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information 
 Score =  419 bits (1078), Expect = e-150
 Identities = 211/247 (85%), Positives = 225/247 (91%)

Query: 1   MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 60
           M  LGY I+AL ++ K   G G+GWT AHATFYGGGDASGTMGGACGYGNLYSQGYGTNT
Sbjct: 1   MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 60

Query: 61  AAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPL 120
           AA+STALFNNGL+CGAC+ IKCVNDN WCLPGSII+TATNFCPPN AL N +GGWCNPP 
Sbjct: 61  AALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQ 120

Query: 121 HHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFNLVLITNVGGAGDV 180
            HFDLSQPVF KIAQYKAGIVPVQYRRVAC+KSGGIRFTINGHSYFNLVLITNVGGAGD+
Sbjct: 121 QHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDI 180

Query: 181 VAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQ 240
           VAVSIKGSK+ WQA+SRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNN AP+NW FGQ
Sbjct: 181 VAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ 240

Query: 241 TYTGRQF 247
           TYTG QF
Sbjct: 241 TYTGMQF 247

Length = 247
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PLN00050247 expansin A; Provisional 100.0
PLN00193256 expansin-A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.96
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.95
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.93
PLN00115118 pollen allergen group 3; Provisional 99.91
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.88
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.77
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 99.08
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.15
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.88
PRK10672361 rare lipoprotein A; Provisional 97.25
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.24
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 90.16
>PLN00050 expansin A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-72  Score=491.66  Aligned_cols=247  Identities=85%  Similarity=1.465  Sum_probs=234.6

Q ss_pred             ChhHHHHHHHHHHhhhccccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEE
Q 025827            1 MAILGYIIIALFTVFKAAVGKGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAI   80 (247)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V   80 (247)
                      |--|+|-|.+||...+-+..+..+|..++|||||++++.++++|||||+++..++++.++||+|+.+|++|.+||+||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV   80 (247)
T PLN00050          1 MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI   80 (247)
T ss_pred             CcchhhhHHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEE
Confidence            56799999999999999998888999999999999999889999999999888889999999999999999999999999


Q ss_pred             EEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCeEEEEEEEeeeccCCceEEEE
Q 025827           81 KCVNDNRWCLPGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTI  160 (247)
Q Consensus        81 ~c~~~p~~C~~gsv~V~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~~~G~~~i~~~~V~C~~~gni~~~v  160 (247)
                      +|.+.+..|.+++|+|+|||+||++++.|+.+++||++++.|||||..||.+||....|+++|+||||+|.++|||+|+|
T Consensus        81 ~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v  160 (247)
T PLN00050         81 KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI  160 (247)
T ss_pred             EcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence            99876557988999999999999988888889999998899999999999999999999999999999999999999999


Q ss_pred             cCccceEEEEEEeeCCCcceEEEEEEecCCceeeccCCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCe
Q 025827          161 NGHSYFNLVLITNVGGAGDVVAVSIKGSKTGWQALSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNVAPANWNFGQ  240 (247)
Q Consensus       161 ~ss~~w~av~v~n~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~v~~~~vip~~w~~g~  240 (247)
                      ++++||++|+|.|++|+++|++|+|++++++|++|+|+||++|+++.++.+.||+||||+.+|+++++.||||++|++|.
T Consensus       161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~  240 (247)
T PLN00050        161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ  240 (247)
T ss_pred             cCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCC
Confidence            99889999999999999999999999987789999999999999988777779999999999999999999999999999


Q ss_pred             EEeCCCC
Q 025827          241 TYTGRQF  247 (247)
Q Consensus       241 ~Y~~~~~  247 (247)
                      +|++.||
T Consensus       241 ty~~~~f  247 (247)
T PLN00050        241 TYTGMQF  247 (247)
T ss_pred             eEecCcC
Confidence            9999988

>PLN00193 expansin-A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 8e-16
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 1e-14
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 34/237 (14%)
Query: 25  WTNAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAAVSTALFNNGLNCGACYAIKC 82
           W  A AT+Y               G  N+    Y   TA  +  +F +G  CG+CY ++C
Sbjct: 19  WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 78
Query: 83  VNDNRWCL--PGSIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQ----- 135
             +   C   P ++ +T  N+ P              P  +HFDLS   F  +A+     
Sbjct: 79  -KEKPECSGNPVTVYITDMNYEP------------IAP--YHFDLSGKAFGSLAKPGLND 123
Query: 136 --YKAGIVPVQYRRVACKKSGGIRFTINGHSYFN----LVLITNVGGAGDVVAVSIKGSK 189
                GI+ V++RRV CK   G +   +     N     VL+  V   GD+V + I+   
Sbjct: 124 KIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKL 183
Query: 190 TG-WQALSRNWGQNWQSNS--YLNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYT 243
           +  W+ +  +WG  W+ ++   L G   S ++T+  G+ VI+ +V PANW     YT
Sbjct: 184 SAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 3e-73
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 8e-71
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 3e-61
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 2e-33
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 7e-33
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 1e-30
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 2e-25
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  222 bits (566), Expect = 3e-73
 Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 31/248 (12%)

Query: 17  AAVGKGAGWTNAHATFYGGGDASGT--MGGACGYGNLYSQGYGTNTAAVSTALFNNGLNC 74
                   W  A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  C
Sbjct: 11  ITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGC 70

Query: 75  GACYAIKCVNDNRWCLPG-SIIVTATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKI 133
           G+CY ++C           ++ +T  N+ P                 +HFDLS   F  +
Sbjct: 71  GSCYEVRCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSL 116

Query: 134 AQ-------YKAGIVPVQYRRVACKKSGGIRFTINGHSYFN----LVLITNVGGAGDVVA 182
           A+          GI+ V++RRV CK   G +   +     N     VL+  V   GD+V 
Sbjct: 117 AKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVL 176

Query: 183 VSIKGSKTG-WQALSRNWGQNWQSNSYLN-GQALSFKVTTSDGRTVISNNVAPANWNFGQ 240
           + I+   +  W+ +  +WG  W+ ++        S ++T+  G+ VI+ +V PANW    
Sbjct: 177 MEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDA 236

Query: 241 TY-TGRQF 247
            Y +  QF
Sbjct: 237 VYTSNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.96
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.96
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.94
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.91
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.66
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.28
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 98.08
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.03
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 97.96
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.85
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.84
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.77
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 94.08
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
Probab=100.00  E-value=6.6e-64  Score=441.25  Aligned_cols=211  Identities=32%  Similarity=0.648  Sum_probs=189.0

Q ss_pred             CCCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEEEE
Q 025827           21 KGAGWTNAHATFYGGGDASGT--MGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIVTA   98 (247)
Q Consensus        21 ~~~~~~~g~aT~Yg~~~~~~~--~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~V~V   98 (247)
                      +.++|.+|+||||+++++.++  .+|||||++++..|++.++||+|+.+|++|++||+||||+|.+.+ .|.+++|+|+|
T Consensus        15 ~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~-~C~~~~v~V~V   93 (241)
T 1n10_A           15 YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPE-ACSGEPVVVHI   93 (241)
T ss_dssp             CCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSST-TBCSCCEEEEE
T ss_pred             ccCCceeeEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCC-ccCCCCEEEEE
Confidence            678999999999999887776  789999999887889999999999999999999999999998754 69989999999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhc-------ccCCeEEEEEEEeeeccCC--ceEEEEc--CccceE
Q 025827           99 TNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQ-------YKAGIVPVQYRRVACKKSG--GIRFTIN--GHSYFN  167 (247)
Q Consensus        99 ~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~-------~~~G~~~i~~~~V~C~~~g--ni~~~v~--ss~~w~  167 (247)
                      ||+|+            |.++..|||||+.||++||+       .+.|+++|+||+|+|+++|  ||+|+|+  |++||+
T Consensus        94 tD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~~  161 (241)
T 1n10_A           94 TDDNE------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYL  161 (241)
T ss_dssp             EEECS------------SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTEE
T ss_pred             eEecC------------CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcceE
Confidence            99996            65467999999999999999       6899999999999999984  8999999  699999


Q ss_pred             EEEEEeeCCCcceEEEEEEecC-CceeeccCCCCceEEeCCC--CCCcceEEEEEecCCcEEEEccccCCCCCCCeEEeC
Q 025827          168 LVLITNVGGAGDVVAVSIKGSK-TGWQALSRNWGQNWQSNSY--LNGQALSFKVTTSDGRTVISNNVAPANWNFGQTYTG  244 (247)
Q Consensus       168 av~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~~~--~~g~p~~vRvT~~~G~~v~~~~vip~~w~~g~~Y~~  244 (247)
                      +|||+|++|.++|++|||++++ +.|++|+|+||++|+++..  +.+ ||+||||+.+||+|+++||||++|++|++|++
T Consensus       162 ~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty~~  240 (241)
T 1n10_A          162 ALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYES  240 (241)
T ss_dssp             EEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCS-CEEEEEEESSSCEEEEEEEECSSCCSSEEEEC
T ss_pred             EEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCC-CEEEEEEEeCCcEEEEccccCCCCCCCCEEeC
Confidence            9999999988999999999987 6899999999999998875  676 99999999999999999999999999999998


Q ss_pred             C
Q 025827          245 R  245 (247)
Q Consensus       245 ~  245 (247)
                      +
T Consensus       241 ~  241 (241)
T 1n10_A          241 K  241 (241)
T ss_dssp             -
T ss_pred             C
Confidence            4
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 1e-47
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 5e-46
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 6e-35
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 4e-30
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  154 bits (389), Expect = 1e-47
 Identities = 34/172 (19%), Positives = 46/172 (26%), Gaps = 38/172 (22%)

Query: 24  GWTNAHATFYGGGDASGTMGGACGYGNL-----YSQGYGTNTAAVSTALFNN------GL 72
           G + A  T Y          GACG G       +    G+  AA S   F++      G 
Sbjct: 13  GKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQ 67

Query: 73  NCGACYAIKCVNDNRWCLPG------SIIVTATNFCPPNFALSNTNGGWCNPPL------ 120
           +CG C  +           G      S     TN CP        N  WCN         
Sbjct: 68  HCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNI----YPNQDWCNQGSQYGGHN 123

Query: 121 -----HHFDLSQPVFLKIAQYKAGIVPVQYRRVACKKSGGIRFTINGHSYFN 167
                 H DL      ++           +  V C            +S + 
Sbjct: 124 KYGYELHLDLE-NGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYG 174
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.93
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.71
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 91.76
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=2.1e-36  Score=245.18  Aligned_cols=123  Identities=33%  Similarity=0.630  Sum_probs=104.7

Q ss_pred             ccCCCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEE
Q 025827           19 VGKGAGWTNAHATFYGGGDASGT--MGGACGYGNLYSQGYGTNTAAVSTALFNNGLNCGACYAIKCVNDNRWCLPGSIIV   96 (247)
Q Consensus        19 ~~~~~~~~~g~aT~Yg~~~~~~~--~~GaCgy~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~V   96 (247)
                      +.|.++|++|+||||+.+++.++  .+|||||++++..|++.++||+|+.+|++|..||+||||+|.+ +..|.+++|+|
T Consensus        11 a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~-~~~c~~~sv~V   89 (143)
T d1n10a2          11 ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGEPVVV   89 (143)
T ss_dssp             CBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS-STTBCSCCEEE
T ss_pred             cccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC-CCcccCCCEEE
Confidence            34889999999999998776553  4799999998877889999999999999999999999999987 45798889999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcc-------cCCeEEEEEEEeeeccCC
Q 025827           97 TATNFCPPNFALSNTNGGWCNPPLHHFDLSQPVFLKIAQY-------KAGIVPVQYRRVACKKSG  154 (247)
Q Consensus        97 ~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~aF~~ia~~-------~~G~~~i~~~~V~C~~~g  154 (247)
                      +|||.||+           |+ +.+|||||+.||.+||+.       +.|+++|+||||+|.++|
T Consensus        90 ~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          90 HITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            99999996           33 468999999999999985       579999999999999986
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure