Citrus Sinensis ID: 025829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFYQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcHHHHHHccHHEEccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHcccEccccccccccHHHHHHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHccccccccccccccEEcc
Coil and Loop (DISEMBL)
MFVASYLTFMtiggfpsfVEDMKVFERErlnghygaTAFVFGNTFSALPYLALISLIPGAIvyylpglhegyQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLmilgggffrlpndlphpfwkyplyYIAFHKYAYQGMFknefeglkfdnnldgeqVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAfmsvpmkqttqimenpcatppqedkifyq
Flexible Loop (DISEMBL)
MFVASYLtfmtiggfpSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTtqimenpcatppqedkifyq
Low Complexity Region (SEG)
MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFYQ
Disordered region (IsUnstruct)
*FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSV*************************
Disordered Region (DISOPRED)
MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP*********************************
Disordered Region (DISEMBL)
MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFYQ
Disordered Region (DISPRO)
MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPM***********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q8RXN0	703	ABC transporter G family	yes	no	0.959	0.337	0.5	1e-58
Q8RWI9	691	ABC transporter G family	no	no	0.935	0.334	0.427	3e-54
Q9C8J8	678	ABC transporter G family	no	no	0.870	0.317	0.434	2e-49
Q9C8K2	687	ABC transporter G family	no	no	0.890	0.320	0.438	3e-47
Q9ZUU9	730	ABC transporter G family	no	no	0.797	0.269	0.311	2e-28
Q3E9B8	624	ABC transporter G family	no	no	0.813	0.322	0.258	3e-19
Q9FLX5	589	ABC transporter G family	no	no	0.842	0.353	0.293	2e-18
Q9MAH4	590	ABC transporter G family	no	no	0.757	0.316	0.27	6e-18
Q9SW08	577	ABC transporter G family	no	no	0.842	0.360	0.302	2e-17
Q9SIT6	649	ABC transporter G family	no	no	0.817	0.311	0.253	3e-16

>sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/242 (50%), Positives = 173/242 (71%), Gaps = 5/242 (2%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           FV  ++TFM+IGGFPSFVEDMKVF+RERLNGHYG  AFV  NT SA P+L +I+ I G I
Sbjct: 439 FVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTI 498

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
            Y++ GLH G+ H+++FVL L+A + +VESLMM +AS+VPN+L GII GAGIQG+ +L  
Sbjct: 499 CYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVS 558

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN-----NLDGEQVLRDKW 176
           GFFRLPND+P PFW+YP+ YI+FH +A QG ++N+  GL FD+      + GE VL + +
Sbjct: 559 GFFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVF 618

Query: 177 QLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCA 236
           Q+ +  SKW++L+++  M++ YR++F  +IKT E + P V+ +++    +     +N   
Sbjct: 619 QIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTV 678

Query: 237 TP 238
            P
Sbjct: 679 AP 680

Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2

 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/243 (42%), Positives = 160/243 (65%), Gaps = 12/243 (4%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           F+  ++TFM+IGGFPSF+E+MKVF +ERL+G+YG + ++  N  S+ P+L  IS+I G I
Sbjct: 417 FITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTI 476

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
            Y L     G+ H+ +F L +F  + ++ESLMM+VAS+VPN+L G+ITGAG+ G++++  
Sbjct: 477 TYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTS 536

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF------DNNLDGEQVLRDK 175
           GFFRL  DLP  FW+YP+ YI++  +A QG +KN+F GL+F      +  + GE+V+   
Sbjct: 537 GFFRLLPDLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKV 596

Query: 176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPC 235
           + +++ YSKW DLA +  ++V YRL+F  ++K  E+  P +KA       Q  + M N  
Sbjct: 597 FGVKVTYSKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKAI------QAKRTMRNLD 650

Query: 236 ATP 238
             P
Sbjct: 651 RRP 653

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 141/221 (63%), Gaps = 6/221 (2%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           F+A ++TFM+IGGF SF+E+MKVF RERLNGHYG   +   N  S+LP++ L+ L   +I
Sbjct: 412 FMAGFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSI 471

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
             Y+     G  HF Y  L L   +  VES MM++AS+VPN+L G++ GAG  G+M+L  
Sbjct: 472 TIYMVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSA 531

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDK 175
           GFFR   DLP  FW+YP+ YI +  +A QG +KNE  G+++D+       + GE +L+  
Sbjct: 532 GFFRFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTV 591

Query: 176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVV 216
             +    SKW+DLA++  +++ YR+ F  I+K  EK+ PV+
Sbjct: 592 LGINPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVI 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1

 Score =  188 bits (477), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 157/226 (69%), Gaps = 6/226 (2%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           F+  ++TFM+IGGFPSF+E+MKVF +ERL+G+YG + ++  N  S+ P+L  I+LI G+I
Sbjct: 418 FITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSI 477

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
            Y +     G  H+ +F L +F  + ++ESLMM+VASLVPN+L G+ITGAGI G++++  
Sbjct: 478 TYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTS 537

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD------NNLDGEQVLRDK 175
           GFFRL  DLP  FW+YP+ ++++  +A QG +KN+F GL+FD        + GEQV+   
Sbjct: 538 GFFRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKI 597

Query: 176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 221
           + +Q+ +SKW DL+ +  ++V YR++F  ++K  E+ +P +KA  +
Sbjct: 598 FGVQVTHSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKAIQA 643

Involved in the secretion of cuticular wax from epidermal cells to the cuticle.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 112/202 (55%), Gaps = 5/202 (2%)

Query: 5   SYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYY 64
           S+ + + I G PS ++++K++  E  N H GA  F+ G    ++P+L L+S+    + Y+
Sbjct: 501 SFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYF 560

Query: 65  LPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFF 124
           + GL + +   +YFVL  F C+L+ E LM+ +A +  +     +T   +  +M+L  G F
Sbjct: 561 MVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHF 620

Query: 125 RLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD----NNLDGEQVLRDKWQLQM 180
           R+   LP P W YP  YI+FH Y+ +G+ +NE+ G  F      ++ G Q ++  +Q+  
Sbjct: 621 RIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISP 680

Query: 181 GY-SKWVDLAILFGMVVFYRLV 201
              +KW ++ +L  M   YRL+
Sbjct: 681 DTNAKWRNMLVLLAMAFGYRLL 702

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9B8|AB23G_ARATH ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 118/213 (55%), Gaps = 12/213 (5%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           F  S+L   T+   P ++ + +V  +E   G Y  ++++  NT + +P+L ++SL+    
Sbjct: 407 FSLSFLLSSTVEALPIYLRERRVLMKESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIP 466

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
           VY++ GL+   Q F +FVL ++  +L+  SL++ ++++ P++++G      + G   L  
Sbjct: 467 VYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFS 526

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK---FDNN-----LDGEQVLR 173
           G+F     +P P W + +YY++ ++Y  + M  NE+  ++   F +      + GE VL+
Sbjct: 527 GYFIPKEKIPKP-WMF-MYYVSLYRYPLESMVVNEYWSMREECFSSGNMGCLMTGEDVLK 584

Query: 174 DKWQLQMGYSKWVDLAILFGMVVFYRLVFLGII 206
           ++   +   ++W+++ I+    VFYR++  GI+
Sbjct: 585 ERGLDK--DTRWINVGIMLAFFVFYRILCWGIL 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLX5|AB8G_ARATH ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 17/225 (7%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           F  ++L   T    P F+ +  +  RE  +G Y  ++ +  NT   LPYL +IS+I    
Sbjct: 368 FTLTFLLSSTTETLPIFINERPILLRETSSGIYRLSSHILANTLVFLPYLFVISIIYSVS 427

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
           VY+L GL   +Q F YFVL+++  +L+  S ++ ++SL PNY+TG      +     L  
Sbjct: 428 VYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAPNYITGTSLVTILLAAFFLFS 487

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD------------NNLDGE 169
           G+F     LP  +W + +Y+ + +KYA   +  NE+  L                 + G 
Sbjct: 488 GYFISKESLPK-YWLF-MYFFSMYKYALDALLINEYSCLASKCLVWLEEAQTKICMVTGG 545

Query: 170 QVLRDKWQLQMGYSKWVDLAILFGMVVFYR-LVFLGIIKTVEKMK 213
            VL+ K   +    +W ++ +L G  V YR L FL +++ V   K
Sbjct: 546 DVLKKKGLHEK--QRWFNVYVLLGFFVLYRVLCFLALLRRVSGSK 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH4|AB10G_ARATH ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 104/200 (52%), Gaps = 13/200 (6%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           F+ ++L   T  G P F++D ++  RE     Y   ++V  +T   +P+L +IS++    
Sbjct: 390 FILTFLLSSTTEGLPIFLQDRRILMRETSRRAYRVLSYVLADTLIFIPFLLIISMLFATP 449

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
           VY+L GL      F+YF L+++  +L+  S +   ++LVPN++ G    +G+ G   L  
Sbjct: 450 VYWLVGLRRELDGFLYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFFLFS 509

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMG 181
           G+F   + +P  +W++ ++Y++  KY ++ +  NE+ G  F    D ++           
Sbjct: 510 GYFIAKDRIP-VYWEF-MHYLSLFKYPFECLMINEYRGDVFLKQQDLKE----------- 556

Query: 182 YSKWVDLAILFGMVVFYRLV 201
             KW +L I+   +V YR++
Sbjct: 557 SQKWSNLGIMASFIVGYRVL 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW08|AB4G_ARATH ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 17/225 (7%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           F  ++L   T    P F+++  +  RE  +G Y  ++ +  NT   LPYL LI++I    
Sbjct: 356 FTLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILANTLVFLPYLLLIAIIYSVS 415

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
           +Y+L GL   +Q   YFVL+++  +L+  S ++ ++SL PNY+ G  +   +     L  
Sbjct: 416 LYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSSVTILLAAFFLFS 475

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNE-----------FEGLKFDNNL-DGE 169
           G+F     LP  +W + +Y+ + +KYA   +  NE           FE    ++ L  G 
Sbjct: 476 GYFISKESLPK-YWLF-MYFFSMYKYALDALLINEYSCLHNKCLVWFEEASVNSCLVTGG 533

Query: 170 QVLRDKWQLQMGYSKWVDLAILFGMVVFYR-LVFLGIIKTVEKMK 213
            VL DK  L     +W ++ +L G  V YR L FL ++K V   K
Sbjct: 534 DVL-DKNGLH-ERQRWFNVYMLLGFFVLYRVLCFLVLLKRVSGSK 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 117/213 (54%), Gaps = 11/213 (5%)

Query: 2   FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
           F+ ++L   TI   P F+++ ++  +E  +G Y  +++   N    LP+L +++++    
Sbjct: 428 FILTFLLTSTIEALPIFLQEREILMKETSSGSYRVSSYAVANGLVYLPFLLILAILFSTP 487

Query: 62  VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
           VY+L GL+  +  F++F LL++  +    S+++  ++LVPN++ G    +G+ G   L  
Sbjct: 488 VYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFS 547

Query: 122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLD---GEQVLRDKWQL 178
           G+F   +++P  +W + ++YI+  KY ++G   NEF   K +  L+   G+ ++ ++  L
Sbjct: 548 GYFISNHEIP-GYWIF-MHYISLFKYPFEGFLINEFS--KSNKCLEYGFGKCLVTEEDLL 603

Query: 179 QMGY----SKWVDLAILFGMVVFYRLVFLGIIK 207
           +       S+W ++ I+   V+ YR +   I++
Sbjct: 604 KEERYGEESRWRNVVIMLCFVLLYRFISYVILR 636

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
224060415	622	white-brown-complex ABC transporter fami	0.894	0.355	0.789	1e-103
255569746	701	ATP-binding cassette transporter, putati	0.963	0.339	0.718	1e-103
224060417	580	white-brown-complex ABC transporter fami	0.866	0.368	0.805	1e-102
357476291	665	White-brown-complex ABC transporter fami	0.963	0.357	0.691	1e-101
356528034	695	PREDICTED: ABC transporter G family memb	0.987	0.351	0.674	1e-100
296084731	592	unnamed protein product [Vitis vinifera]	0.963	0.402	0.689	3e-99
359497155	741	PREDICTED: ABC transporter G family memb	0.963	0.321	0.689	3e-99
147782239	691	hypothetical protein VITISV_012972 [Viti	0.963	0.344	0.703	4e-98
359480500	741	PREDICTED: ABC transporter G family memb	0.963	0.321	0.685	5e-98
297741821	629	unnamed protein product [Vitis vinifera]	0.963	0.378	0.685	6e-98

>gi|224060415|ref|XP_002300188.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222847446|gb|EEE84993.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/228 (78%), Positives = 202/228 (88%), Gaps = 7/228 (3%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MF+AS+LTFMTIGGFPSFVEDMKVFERERLNGHYGATAFV GNTFSA PYL LIS+IPGA
Sbjct: 395 MFIASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVLGNTFSAFPYLLLISVIPGA 454

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I YYLPGLH+GY+HFIYFVL+LFACM+LVESLMM VAS+VPN+L GIITGAGIQ  MILG
Sbjct: 455 ITYYLPGLHKGYEHFIYFVLVLFACMMLVESLMMTVASMVPNFLMGIITGAGIQAFMILG 514

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLR 173
           GGFFRLPNDLP PFWKYP+YYIAFHKYAYQGMFKNEFEGL F +N       + GEQ+LR
Sbjct: 515 GGFFRLPNDLPQPFWKYPMYYIAFHKYAYQGMFKNEFEGLTFPSNQTGGPRTIPGEQILR 574

Query: 174 DKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 221
           D+WQ++MG SKWVDLAIL GMVV YR++FL IIKT EK+KP++ A +S
Sbjct: 575 DRWQVEMGVSKWVDLAILLGMVVLYRILFLVIIKTSEKIKPIIAAIVS 622

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569746|ref|XP_002525837.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223534842|gb|EEF36531.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/245 (71%), Positives = 204/245 (83%), Gaps = 7/245 (2%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MF+AS+LTFM IGGFPSFVEDMK+F+RERLNGHYG  AFV GNTFSA+P+L LISL+PGA
Sbjct: 450 MFIASFLTFMAIGGFPSFVEDMKIFQRERLNGHYGTAAFVLGNTFSAIPFLLLISLVPGA 509

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I Y+LPGLH G +HF+YF+  LFACM+LVESLMM VAS+VPN+L GIITGAGIQ LMIL 
Sbjct: 510 ITYFLPGLHGGAEHFLYFICSLFACMMLVESLMMTVASIVPNFLMGIITGAGIQSLMILA 569

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLR 173
           GGFFRLP DLP PFWKYP++YIAFH+YAYQGMFKNEFEGL F NN       + GE++LR
Sbjct: 570 GGFFRLPRDLPAPFWKYPMHYIAFHRYAYQGMFKNEFEGLTFPNNQIGGPSEVSGEEILR 629

Query: 174 DKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMEN 233
           + WQ+ + YSKWVDLAIL GMVV YRL+FLGII   EK+KP++ A +S   KQTTQIMEN
Sbjct: 630 NIWQVDLSYSKWVDLAILLGMVVVYRLLFLGIISIKEKVKPMITALISASPKQTTQIMEN 689

Query: 234 PCATP 238
           P  TP
Sbjct: 690 PVTTP 694

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060417|ref|XP_002300189.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222847447|gb|EEE84994.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/221 (80%), Positives = 198/221 (89%), Gaps = 7/221 (3%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MF+AS+LTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSA PYL LIS+IPGA
Sbjct: 360 MFIASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSAFPYLLLISVIPGA 419

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I YYLPGLH+GY+HFIYFVL+LFACM+LVESLMM VAS+VPN+L GIITGAGIQ  M+LG
Sbjct: 420 ITYYLPGLHKGYEHFIYFVLVLFACMMLVESLMMTVASVVPNFLMGIITGAGIQAFMVLG 479

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLR 173
           GGFFRLPNDLP PFWKYP+YYIAFHKYAYQGMFKNEFEGL F +N       + GEQ+LR
Sbjct: 480 GGFFRLPNDLPQPFWKYPMYYIAFHKYAYQGMFKNEFEGLTFPSNQAGGPRTIPGEQILR 539

Query: 174 DKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP 214
           D+WQ++MG SKWVDLAIL GMVV YR++FL IIKT EK+KP
Sbjct: 540 DRWQVEMGVSKWVDLAILLGMVVLYRILFLVIIKTTEKIKP 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476291|ref|XP_003608431.1| White-brown-complex ABC transporter family [Medicago truncatula] gi|355509486|gb|AES90628.1| White-brown-complex ABC transporter family [Medicago truncatula]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 170/246 (69%), Positives = 210/246 (85%), Gaps = 8/246 (3%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MFV S+LTFMTIGGFPS+VEDMKVFERERLNGHYG TA+V GNT SA+PYL +ISLIPGA
Sbjct: 414 MFVFSFLTFMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTLSAIPYLLMISLIPGA 473

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I YY PGL +G++HFIYF+  LF+C++LVESLMMIVAS+VP++L GIITGAGIQG+M+L 
Sbjct: 474 IAYYPPGLQKGFEHFIYFICALFSCLMLVESLMMIVASIVPDFLMGIITGAGIQGIMMLA 533

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD--------NNLDGEQVL 172
           GGFFRLPNDLP+PFW+YP++YI+FH+YA+QG +KNEFEGLKF+        N + GE++L
Sbjct: 534 GGFFRLPNDLPNPFWRYPMFYISFHRYAFQGSYKNEFEGLKFERDEIGGSLNYISGEEIL 593

Query: 173 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIME 232
           R+K+ + M YSKWVDL +L GM+V YR+VFL IIKT EK+KP+V +FMSV  +QT QI+E
Sbjct: 594 RNKFHVDMSYSKWVDLGVLLGMIVLYRVVFLIIIKTTEKLKPIVMSFMSVSPRQTRQILE 653

Query: 233 NPCATP 238
           NP ATP
Sbjct: 654 NPTATP 659

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528034|ref|XP_003532610.1| PREDICTED: ABC transporter G family member 11-like [Glycine max]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/252 (67%), Positives = 209/252 (82%), Gaps = 8/252 (3%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MFV+S++TFMTIGGFPSFVEDMKVFERERLNGHY  TAFV GNTFS++PYL L+S+IPG 
Sbjct: 443 MFVSSFMTFMTIGGFPSFVEDMKVFERERLNGHYSVTAFVIGNTFSSIPYLLLVSIIPGV 502

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I Y+LPGL + ++HF+YF+ +LFAC++LVE LMMIVAS+VPN+LTGIITGAGIQG+MILG
Sbjct: 503 IAYFLPGLQKDFEHFVYFICVLFACLMLVEGLMMIVASIVPNFLTGIITGAGIQGIMILG 562

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------LDGEQVLRD 174
            GFFRLPNDLP PFWKYP++YIAFH+Y YQGMFKNEFEGL+F  N      + GE++LRD
Sbjct: 563 AGFFRLPNDLPKPFWKYPMFYIAFHRYVYQGMFKNEFEGLRFATNNVGGGYISGEEILRD 622

Query: 175 KWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS--VPMKQTTQIME 232
            WQ+   YSKWVDL I+ GM++ YR++FL  IKT EK+KP++ +FMS     K+T  IM+
Sbjct: 623 VWQVNTSYSKWVDLGIVLGMIIVYRVLFLINIKTTEKLKPIIVSFMSSWSSPKRTILIMQ 682

Query: 233 NPCATPPQEDKI 244
           NP ATP QE K+
Sbjct: 683 NPNATPLQEVKV 694

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084731|emb|CBI25872.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 208/245 (84%), Gaps = 7/245 (2%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MFVA++LTFM IGGFPSFVEDMK+F RERLNGHYG  AFV GNTFS++PYL +ISLIPG 
Sbjct: 341 MFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGV 400

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I YYL GLH+G++HF+YF L+LF CM+LVESLMMIVAS+VP++L GIITGAGIQG+M+L 
Sbjct: 401 IAYYLVGLHKGFEHFVYFALMLFVCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLN 460

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLR 173
           GGFFRLPNDLP PFW+YP+YYIAFHKYA QG +KNEF+GL F NN       + GE++L+
Sbjct: 461 GGFFRLPNDLPKPFWRYPMYYIAFHKYANQGFYKNEFQGLTFPNNQAGGPPTITGEEILQ 520

Query: 174 DKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMEN 233
           + WQ++ GYSKWVD+AILFGMVV YRL+FLGIIKTVEK+KP++K  M    +++ QI+EN
Sbjct: 521 NVWQVETGYSKWVDVAILFGMVVLYRLLFLGIIKTVEKVKPMIKGLMVASPEKSKQIIEN 580

Query: 234 PCATP 238
           P ++P
Sbjct: 581 PPSSP 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497155|ref|XP_003635438.1| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 169/245 (68%), Positives = 208/245 (84%), Gaps = 7/245 (2%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MFVA++LTFM IGGFPSFVEDMK+F RERLNGHYG  AFV GNTFS++PYL +ISLIPG 
Sbjct: 490 MFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGV 549

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I YYL GLH+G++HF+YF L+LF CM+LVESLMMIVAS+VP++L GIITGAGIQG+M+L 
Sbjct: 550 IAYYLVGLHKGFEHFVYFALMLFVCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLN 609

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLR 173
           GGFFRLPNDLP PFW+YP+YYIAFHKYA QG +KNEF+GL F NN       + GE++L+
Sbjct: 610 GGFFRLPNDLPKPFWRYPMYYIAFHKYANQGFYKNEFQGLTFPNNQAGGPPTITGEEILQ 669

Query: 174 DKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMEN 233
           + WQ++ GYSKWVD+AILFGMVV YRL+FLGIIKTVEK+KP++K  M    +++ QI+EN
Sbjct: 670 NVWQVETGYSKWVDVAILFGMVVLYRLLFLGIIKTVEKVKPMIKGLMVASPEKSKQIIEN 729

Query: 234 PCATP 238
           P ++P
Sbjct: 730 PPSSP 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782239|emb|CAN60999.1| hypothetical protein VITISV_012972 [Vitis vinifera]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 171/243 (70%), Positives = 205/243 (84%), Gaps = 5/243 (2%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           M+VAS+LTFM+IGGFPSFVEDMKVF RERLNGHYG+++FV GNT S++PYL +ISLIPGA
Sbjct: 439 MYVASFLTFMSIGGFPSFVEDMKVFGRERLNGHYGSSSFVVGNTLSSVPYLLVISLIPGA 498

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I Y+L GL + Y HFIY+ L+LF CM+LVESLMMIVAS+VPN+L GIITGAGIQGL+ILG
Sbjct: 499 IAYFLTGLQKEYAHFIYYALVLFTCMMLVESLMMIVASVVPNFLMGIITGAGIQGLLILG 558

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-----LDGEQVLRDK 175
           GGFFRLPNDLP+ FW+YPLYYI+F++YAYQG++KNEF GL F +N     + GE+VLR+ 
Sbjct: 559 GGFFRLPNDLPNVFWRYPLYYISFNRYAYQGLYKNEFLGLTFPSNIAGRVITGEEVLRET 618

Query: 176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPC 235
           WQ++M YSKWVDL+IL GMVV YR +F   IKT EK+ P VKAFMS P KQT Q+M NP 
Sbjct: 619 WQMEMAYSKWVDLSILIGMVVLYRFLFFIFIKTTEKVIPTVKAFMSRPPKQTKQVMANPF 678

Query: 236 ATP 238
           ATP
Sbjct: 679 ATP 681

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480500|ref|XP_002269388.2| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 168/245 (68%), Positives = 207/245 (84%), Gaps = 7/245 (2%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MFVA++LTFM IGGFPSFVEDMK+F RERLNGHYG  AFV GNTFS++PYL +ISLIPG 
Sbjct: 490 MFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGV 549

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I YYL GLH+G++HF+YF L+LF CM+LVESLMMIVAS+VP++L GIITGAGIQG+M+L 
Sbjct: 550 IAYYLVGLHKGFEHFVYFALMLFVCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLN 609

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLR 173
           GGFFRLPNDLP PFW+YP+YYIAFHKYA QG +KNEF+GL F NN       + GE++L+
Sbjct: 610 GGFFRLPNDLPKPFWRYPMYYIAFHKYANQGFYKNEFQGLTFPNNQAGGPPTISGEEILQ 669

Query: 174 DKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMEN 233
           + WQ++ GYSKWVD+AILFGMVV YRL+FLGIIKTVEK+K ++K  M    +++ QI+EN
Sbjct: 670 NVWQVETGYSKWVDVAILFGMVVLYRLLFLGIIKTVEKVKLMIKDLMVASPEKSKQIIEN 729

Query: 234 PCATP 238
           P ++P
Sbjct: 730 PPSSP 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741821|emb|CBI33134.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 168/245 (68%), Positives = 207/245 (84%), Gaps = 7/245 (2%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
           MFVA++LTFM IGGFPSFVEDMK+F RERLNGHYG  AFV GNTFS++PYL +ISLIPG 
Sbjct: 378 MFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGV 437

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I YYL GLH+G++HF+YF L+LF CM+LVESLMMIVAS+VP++L GIITGAGIQG+M+L 
Sbjct: 438 IAYYLVGLHKGFEHFVYFALMLFVCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLN 497

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLR 173
           GGFFRLPNDLP PFW+YP+YYIAFHKYA QG +KNEF+GL F NN       + GE++L+
Sbjct: 498 GGFFRLPNDLPKPFWRYPMYYIAFHKYANQGFYKNEFQGLTFPNNQAGGPPTISGEEILQ 557

Query: 174 DKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMEN 233
           + WQ++ GYSKWVD+AILFGMVV YRL+FLGIIKTVEK+K ++K  M    +++ QI+EN
Sbjct: 558 NVWQVETGYSKWVDVAILFGMVVLYRLLFLGIIKTVEKVKLMIKDLMVASPEKSKQIIEN 617

Query: 234 PCATP 238
           P ++P
Sbjct: 618 PPSSP 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2030898	703	ABCG11 "ATP-binding cassette G	0.910	0.320	0.528	1.7e-66
TAIR|locus:2092960	691	ABCG15 "ATP-binding cassette G	0.890	0.318	0.442	1.3e-52
TAIR|locus:2033899	687	ABCG12 "ATP-binding cassette G	0.890	0.320	0.438	3.5e-52
TAIR|locus:2033939	678	ABCG13 "ATP-binding cassette G	0.935	0.340	0.418	2.9e-48
TAIR|locus:2046203	730	ABCG3 "ATP-binding cassette G3	0.834	0.282	0.306	2.5e-29
CGD|CAL0002254	579	orf19.3120 [Candida albicans (	0.829	0.354	0.295	7.9e-26
UNIPROTKB|Q5A0X6	579	CaO19.10632 "Putative uncharac	0.829	0.354	0.295	7.9e-26
TAIR|locus:2150290	624	ABCG23 "ATP-binding cassette G	0.809	0.320	0.266	3.8e-22
TAIR|locus:2176937	589	ABCG8 "ATP-binding cassette G8	0.842	0.353	0.293	8.4e-21
TAIR|locus:2117507	577	ABCG4 "ATP-binding cassette G4	0.842	0.360	0.302	1.7e-20

TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 122/231 (52%), Positives = 172/231 (74%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             FV  ++TFM+IGGFPSFVEDMKVF+RERLNGHYG  AFV  NT SA P+L +I+ I G I
Sbjct:   439 FVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTI 498

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
              Y++ GLH G+ H+++FVL L+A + +VESLMM +AS+VPN+L GII GAGIQG+ +L  
Sbjct:   499 CYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVS 558

Query:   122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-----LDGEQVLRDKW 176
             GFFRLPND+P PFW+YP+ YI+FH +A QG ++N+  GL FD+      + GE VL + +
Sbjct:   559 GFFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVF 618

Query:   177 QLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVP-MKQ 226
             Q+ +  SKW++L+++  M++ YR++F  +IKT E + P V+ +++   MKQ
Sbjct:   619 QIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIARRRMKQ 669

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0015245 "fatty acid transporter activity" evidence=TAS

GO:0015908 "fatty acid transport" evidence=TAS

GO:0080051 "cutin transport" evidence=IMP

TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 100/226 (44%), Positives = 156/226 (69%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             F+  ++TFM+IGGFPSF+E+MKVF +ERL+G+YG + ++  N  S+ P+L  IS+I G I
Sbjct:   417 FITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTI 476

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
              Y L     G+ H+ +F L +F  + ++ESLMM+VAS+VPN+L G+ITGAG+ G++++  
Sbjct:   477 TYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTS 536

Query:   122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDK 175
             GFFRL  DLP  FW+YP+ YI++  +A QG +KN+F GL+F+        + GE+V+   
Sbjct:   537 GFFRLLPDLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKV 596

Query:   176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 221
             + +++ YSKW DLA +  ++V YRL+F  ++K  E+  P +KA  +
Sbjct:   597 FGVKVTYSKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKAIQA 642

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 99/226 (43%), Positives = 157/226 (69%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             F+  ++TFM+IGGFPSF+E+MKVF +ERL+G+YG + ++  N  S+ P+L  I+LI G+I
Sbjct:   418 FITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSI 477

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
              Y +     G  H+ +F L +F  + ++ESLMM+VASLVPN+L G+ITGAGI G++++  
Sbjct:   478 TYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTS 537

Query:   122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDK 175
             GFFRL  DLP  FW+YP+ ++++  +A QG +KN+F GL+FD        + GEQV+   
Sbjct:   538 GFFRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKI 597

Query:   176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 221
             + +Q+ +SKW DL+ +  ++V YR++F  ++K  E+ +P +KA  +
Sbjct:   598 FGVQVTHSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKAIQA 643

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 100/239 (41%), Positives = 147/239 (61%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             F+A ++TFM+IGGF SF+E+MKVF RERLNGHYG   +   N  S+LP++ L+ L   +I
Sbjct:   412 FMAGFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSI 471

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
               Y+     G  HF Y  L L   +  VES MM++AS+VPN+L G++ GAG  G+M+L  
Sbjct:   472 TIYMVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSA 531

Query:   122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLD------GEQVLRDK 175
             GFFR   DLP  FW+YP+ YI +  +A QG +KNE  G+++D+ L       GE +L+  
Sbjct:   532 GFFRFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTV 591

Query:   176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENP 234
               +    SKW+DLA++  +++ YR+ F  I+K  EK+ PV+   M    +  + I + P
Sbjct:   592 LGINPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVIH--MLYTKRTLSHIQKRP 648

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009651 "response to salt stress" evidence=IDA

GO:0080051 "cutin transport" evidence=IMP

GO:0080172 "petal epidermis patterning" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 2.5e-29, P = 2.5e-29
 Identities = 65/212 (30%), Positives = 118/212 (55%)

Query:     1 MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
             +FV S+ + + I G PS ++++K++  E  N H GA  F+ G    ++P+L L+S+    
Sbjct:   498 VFV-SFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSL 556

Query:    61 IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
             + Y++ GL + +   +YFVL  F C+L+ E LM+ +A +  +     +T   +  +M+L 
Sbjct:   557 VFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLA 616

Query:   121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD----NNLDGEQVLRDKW 176
              G FR+   LP P W YP  YI+FH Y+ +G+ +NE+ G  F      ++ G Q ++  +
Sbjct:   617 AGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNY 676

Query:   177 QLQMGYS-KWVDLAILFGMVVFYRLVFLGIIK 207
             Q+    + KW ++ +L  M   YRL+   +++
Sbjct:   677 QISPDTNAKWRNMLVLLAMAFGYRLLVYVLLR 708

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)]

 Score = 299 (110.3 bits), Expect = 7.9e-26, P = 7.9e-26
 Identities = 65/220 (29%), Positives = 119/220 (54%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             F  ++++FM++   PS++ED++ +++ER+NG YG  AF   N    LP+L LI+ +   I
Sbjct:   358 FSGAFMSFMSVAYIPSYLEDIQSYKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVI 417

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
              +++   H+    F Y+++ LF  ++  ES+   +AS+ PN++  +   A   GL +  G
Sbjct:   418 TFFMVNFHQTASGFWYYLMWLFLDLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVG 477

Query:   122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF----------DNNLDGEQV 171
             GF  +P+++ + FW Y  Y+I + +Y +QGM  NEF   +F          D+ L  +  
Sbjct:   478 GFL-VPSNILNVFWYYTFYWIDYQRYVFQGMIFNEFTNREFRCGDGCHCMYDSPLASQCK 536

Query:   172 LRDKWQLQ-MGYS---KWVDLAILFGMVVFYRLVFLGIIK 207
             +  K  L+ +GY    K + + +L  +V  YR     ++K
Sbjct:   537 ISGKAVLESLGYGNYDKGLWIGVLIALVFVYRFATYIVLK 576

GO:0005524 "ATP binding" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 299 (110.3 bits), Expect = 7.9e-26, P = 7.9e-26
 Identities = 65/220 (29%), Positives = 119/220 (54%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             F  ++++FM++   PS++ED++ +++ER+NG YG  AF   N    LP+L LI+ +   I
Sbjct:   358 FSGAFMSFMSVAYIPSYLEDIQSYKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVI 417

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
              +++   H+    F Y+++ LF  ++  ES+   +AS+ PN++  +   A   GL +  G
Sbjct:   418 TFFMVNFHQTASGFWYYLMWLFLDLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVG 477

Query:   122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF----------DNNLDGEQV 171
             GF  +P+++ + FW Y  Y+I + +Y +QGM  NEF   +F          D+ L  +  
Sbjct:   478 GFL-VPSNILNVFWYYTFYWIDYQRYVFQGMIFNEFTNREFRCGDGCHCMYDSPLASQCK 536

Query:   172 LRDKWQLQ-MGYS---KWVDLAILFGMVVFYRLVFLGIIK 207
             +  K  L+ +GY    K + + +L  +V  YR     ++K
Sbjct:   537 ISGKAVLESLGYGNYDKGLWIGVLIALVFVYRFATYIVLK 576

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2150290 ABCG23 "ATP-binding cassette G23" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 57/214 (26%), Positives = 121/214 (56%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             F  S+L   T+   P ++ + +V  +E   G Y  ++++  NT + +P+L ++SL+    
Sbjct:   407 FSLSFLLSSTVEALPIYLRERRVLMKESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIP 466

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
             VY++ GL+   Q F +FVL ++  +L+  SL++ ++++ P++++G      + G   L  
Sbjct:   467 VYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFS 526

Query:   122 GFFRLPND-LPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK---FDNN-----LDGEQVL 172
             G+F +P + +P P W + +YY++ ++Y  + M  NE+  ++   F +      + GE VL
Sbjct:   527 GYF-IPKEKIPKP-WMF-MYYVSLYRYPLESMVVNEYWSMREECFSSGNMGCLMTGEDVL 583

Query:   173 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGII 206
             +++  L    ++W+++ I+    VFYR++  GI+
Sbjct:   584 KERG-LDKD-TRWINVGIMLAFFVFYRILCWGIL 615

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2176937 ABCG8 "ATP-binding cassette G8" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 8.4e-21, P = 8.4e-21
 Identities = 66/225 (29%), Positives = 110/225 (48%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             F  ++L   T    P F+ +  +  RE  +G Y  ++ +  NT   LPYL +IS+I    
Sbjct:   368 FTLTFLLSSTTETLPIFINERPILLRETSSGIYRLSSHILANTLVFLPYLFVISIIYSVS 427

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
             VY+L GL   +Q F YFVL+++  +L+  S ++ ++SL PNY+TG      +     L  
Sbjct:   428 VYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAPNYITGTSLVTILLAAFFLFS 487

Query:   122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL---------KFDNNL---DGE 169
             G+F     LP  +W + +Y+ + +KYA   +  NE+  L         +    +    G 
Sbjct:   488 GYFISKESLPK-YWLF-MYFFSMYKYALDALLINEYSCLASKCLVWLEEAQTKICMVTGG 545

Query:   170 QVLRDKWQLQMGYSKWVDLAILFGMVVFYR-LVFLGIIKTVEKMK 213
              VL+ K   +    +W ++ +L G  V YR L FL +++ V   K
Sbjct:   546 DVLKKKGLHEK--QRWFNVYVLLGFFVLYRVLCFLALLRRVSGSK 588

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2117507 ABCG4 "ATP-binding cassette G4" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 68/225 (30%), Positives = 113/225 (50%)

Query:     2 FVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAI 61
             F  ++L   T    P F+++  +  RE  +G Y  ++ +  NT   LPYL LI++I    
Sbjct:   356 FTLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILANTLVFLPYLLLIAIIYSVS 415

Query:    62 VYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGG 121
             +Y+L GL   +Q   YFVL+++  +L+  S ++ ++SL PNY+ G  +   +     L  
Sbjct:   416 LYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSSVTILLAAFFLFS 475

Query:   122 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK------FD----NN--LDGE 169
             G+F     LP  +W + +Y+ + +KYA   +  NE+  L       F+    N+  + G 
Sbjct:   476 GYFISKESLPK-YWLF-MYFFSMYKYALDALLINEYSCLHNKCLVWFEEASVNSCLVTGG 533

Query:   170 QVLRDKWQLQMGYSKWVDLAILFGMVVFYR-LVFLGIIKTVEKMK 213
              VL DK  L     +W ++ +L G  V YR L FL ++K V   K
Sbjct:   534 DVL-DKNGLHER-QRWFNVYMLLGFFVLYRVLCFLVLLKRVSGSK 576

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.3594.1 white-brown-complex ABC transporter family (622 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	9e-18
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	4e-17
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-10
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-06
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-06

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 81.6 bits (202), Expect = 9e-18
 Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 21/216 (9%)

Query: 2   FVASYLTFMTI-GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
              + +TF  +      F  ++ VF RE  +G Y  +A+    T + LP   ++  +  +
Sbjct: 398 LFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTS 457

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I Y++ GL  G  HF+ F+ L+     +  S   +++    +    +  G       +L 
Sbjct: 458 ITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLF 517

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK----FDNNL------DGEQ 170
           GGFF   + +P  ++K+ L Y+++ +Y  +G+  N++  +        N        GE 
Sbjct: 518 GGFFINSDSIP-VYFKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEV 575

Query: 171 VLRDKWQLQMGYSK---WVDLAILFGMVVFYRLVFL 203
           +L       + +     ++DL  L  ++ F+RL+  
Sbjct: 576 ILE-----TLSFRNADLYLDLIGLVILIFFFRLLAY 606

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 1   MFVASYLTFMTIGGF-PSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPG 59
            F   +  F ++ G  P F+ +  V ERE  +  Y  +A+V       LP   L ++I  
Sbjct: 57  FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116

Query: 60  AIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMIL 119
            IVY++ GL      F  F+L+L    L    L + +A+L P++      G  +   ++L
Sbjct: 117 LIVYFMVGLP--VSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174

Query: 120 GGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF 157
             GFF   + +P   W   +YY+    YA + +  NEF
Sbjct: 175 LSGFFIPVDSMPG--WLQWIYYLNPLTYAIEALRANEF 210

Length = 210

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 33/233 (14%)

Query: 1   MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGA 60
            F   +  F ++    S  E   + E+ R    Y  +A    +  S +P+  + S++   
Sbjct: 458 FFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNI 517

Query: 61  IVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILG 120
           I+Y++         F +++L+LF C L +  L   + ++    L+  +T A I  L +  
Sbjct: 518 ILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKT-LSEAMTPAAILLLALSI 576

Query: 121 GGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN--------------- 165
              F +P      + K+ +YY+    YA++ +  NEF G +F+ +               
Sbjct: 577 YTGFAIPRPSMLGWSKW-IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVT 635

Query: 166 ---------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFL 203
                          +DG+  L+  +Q    + KW +  I+ G  VF+  V++
Sbjct: 636 NKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYI 687

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 20/198 (10%)

Query: 24   VFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLF 83
            VF RER  G Y A  +        +PY+ + +     IVY +         F +F  + F
Sbjct: 1276 VFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISF 1335

Query: 84   ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHP------FWKY 137
               L      M+  SL PN     I  A   GL  L  GFF     +P P       W Y
Sbjct: 1336 FSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFF-----IPRPKIPKWWVWYY 1390

Query: 138  PLYYIAFHKYAYQGMFKNEFEGLKFDNNLDG-EQVLRDKWQLQMGYSKWVDL-----AIL 191
             +  +A+  Y   G+  +++  ++    + G       KW +Q  Y    D      A+L
Sbjct: 1391 WICPVAWTVY---GLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVL 1447

Query: 192  FGMVVFYRLVFLGIIKTV 209
             G  VF+  +F   I+T+
Sbjct: 1448 VGFTVFFAFIFAFCIRTL 1465

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 16   PSFVEDMKVFE-RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGL------ 68
            P FV    ++E RER +  +   AF+       +PY  +   I   I YY  G       
Sbjct: 1149 PPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASK 1208

Query: 69   -HEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLP 127
              + ++  + F LL     L   +L  +V S  PN     +  + +  + +   G    P
Sbjct: 1209 TGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPP 1268

Query: 128  NDLPHPFWKYPLYYIAFHKYAYQGM 152
            + +P  FW + +Y  +   Y  Q +
Sbjct: 1269 SRMPG-FWIF-MYRCSPFTYLVQAL 1291

[Transport and binding proteins, Other]. Length = 1394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.93
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.65
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.64
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.52
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.51
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.47
PRK15066	257	inner membrane transport permease; Provisional	99.32
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.25
TIGR01248	152	drrC daunorubicin resistance protein C. The model	99.22
COG0842	286	ABC-type multidrug transport system, permease comp	99.17
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	98.56
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	98.5
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.46
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.25
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	97.9
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	97.9
PF08370	65	PDR_assoc: Plant PDR ABC transporter associated; I	97.45
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	97.12
COG1511	780	Predicted membrane protein [Function unknown]	97.04
COG1277	278	NosY ABC-type transport system involved in multi-c	96.84
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.81
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	95.89
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	95.81
COG4587	268	ABC-type uncharacterized transport system, permeas	95.41
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	93.61
PF06182	229	ABC2_membrane_6: ABC-2 family transporter protein;	93.52
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	92.45
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	91.65
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	91.44
TIGR03732	241	lanti_perm_MutE lantibiotic protection ABC transpo	88.97
COG4200	239	Uncharacterized protein conserved in bacteria [Fun	87.84
COG2386	221	CcmB ABC-type transport system involved in cytochr	86.17

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=4.9e-36  Score=285.09  Aligned_cols=209  Identities=22%  Similarity=0.442  Sum_probs=192.2

Q ss_pred             ChHhHHHHHHh-hhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHH
Q 025829            1 MFVASYLTFMT-IGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFV   79 (247)
Q Consensus         1 ~~~~~~~~~~~-~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~   79 (247)
                      |++++..++.+ +.+++.|+.||++|.||+.+|+|++.+|++|++++++|..++.+++|.++.|||+|+++++.+|+.++
T Consensus       397 f~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~  476 (617)
T TIGR00955       397 FLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFL  476 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHH
Confidence            35566667765 46889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCC
Q 025829           80 LLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG  159 (247)
Q Consensus        80 l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~  159 (247)
                      +++++..+++.++|+++++++|+...|+.+++++..++++++|++++.++||+ ||+ |++|+||++|++++++.|||++
T Consensus       477 l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~nef~~  554 (617)
T TIGR00955       477 FLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQWSD  554 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999998 666 5999999999999999999988


Q ss_pred             Ccc-C---------CCCCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 025829          160 LKF-D---------NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK  213 (247)
Q Consensus       160 ~~~-~---------c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~  213 (247)
                      .++ +         |..+|+++|+. +|++.++ .|.++++|+++.++|+++++++||++.+++
T Consensus       555 ~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~~  616 (617)
T TIGR00955       555 VDNIECTSANTTGPCPSSGEVILET-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRRK  616 (617)
T ss_pred             CccccccCcCcCCCCCcChHHHHHh-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            653 3         45679999998 8998775 899999999999999999999999876654

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1e-34  Score=295.09  Aligned_cols=209  Identities=22%  Similarity=0.362  Sum_probs=192.1

Q ss_pred             HhHHHHHHhh-hcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHH
Q 025829            3 VASYLTFMTI-GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLL   81 (247)
Q Consensus         3 ~~~~~~~~~~-~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~   81 (247)
                      ++.+.++... +.+|.|..||++|+||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+|++++.+.|+.++++
T Consensus      1254 ~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~ 1333 (1470)
T PLN03140       1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFI 1333 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Confidence            4445555443 567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCc
Q 025829           82 LFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK  161 (247)
Q Consensus        82 ~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~  161 (247)
                      +++..+++.++|+++++++||...|..+++++..++++|||+++|.++||+ ||+ |++|+||++|++++++.|+|+|.+
T Consensus      1334 ~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~~y~~~~l~~~~f~~~~ 1411 (1470)
T PLN03140       1334 SFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWV-WYYWICPVAWTVYGLIVSQYGDVE 1411 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HHH-HHHHcCHHHHHHhhhHHHHhCCCC
Confidence            999999999999999999999999999999999999999999999999998 787 599999999999999999999876


Q ss_pred             cCCC-------CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829          162 FDNN-------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP  214 (247)
Q Consensus       162 ~~c~-------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~  214 (247)
                      +.|+       .++++++.+.+|+++++ .|++++++++|.++|++++++++++.+.+|+
T Consensus      1412 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140       1412 DTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred             CcccCCCCCCCCcHHHHHHHhcCcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence            5442       45778887779999886 9999999999999999999999999998875

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.6e-34  Score=275.53  Aligned_cols=204  Identities=18%  Similarity=0.323  Sum_probs=177.7

Q ss_pred             ChHhHHHHHH-hhhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHH
Q 025829            1 MFVASYLTFM-TIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFV   79 (247)
Q Consensus         1 ~~~~~~~~~~-~~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~   79 (247)
                      ||++.+.++. ++++++.|+.||++|+||+++|+|++.+|++|++++++|+.++.+++|.+|+|||+|++++..+|+.++
T Consensus       443 ff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~  522 (659)
T PLN03211        443 FFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTL  522 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHH
Confidence            3555665654 468999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCC
Q 025829           80 LLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG  159 (247)
Q Consensus        80 l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~  159 (247)
                      +++++..+++.++|+++++++||...|+.+++++..++++|||++++  +||+ ||+ |++|+||++|++|+++.|||.+
T Consensus       523 li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~-~~~-W~~ylS~~~y~~eal~~nef~~  598 (659)
T PLN03211        523 LVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS-CMA-WIKYISTTFYSYRLLINVQYGE  598 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH-HHH-HHHHhCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999997  7998 677 5999999999999999999976


Q ss_pred             Cc-----cCCCC------CHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829          160 LK-----FDNNL------DGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE  210 (247)
Q Consensus       160 ~~-----~~c~~------~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~  210 (247)
                      .+     +.|+.      .+..++.+ ...+.. +.|.++++|+++.++++++++++|++.+
T Consensus       599 ~~~~~~~~~C~~~~~~~~~~c~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~L~~~~  658 (659)
T PLN03211        599 GKRISSLLGCSLPHGSDRASCKFVEE-DVAGQI-SPATSVSVLIFMFVGYRLLAYLALRRIK  658 (659)
T ss_pred             ccccccccCCCCcccCCCCCCccchh-hhhccc-chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            42     23431      12223333 222323 3899999999999999999999998654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.1e-34  Score=295.10  Aligned_cols=210  Identities=21%  Similarity=0.437  Sum_probs=195.7

Q ss_pred             ChHhHHHHHHhhhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829            1 MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL   80 (247)
Q Consensus         1 ~~~~~~~~~~~~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l   80 (247)
                      ||++++++++++..++.+..||++|+||+++|+|++++|++|++++++|..++.+++|.+|+|||.|++.+.++|+.+++
T Consensus       458 f~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l  537 (1394)
T TIGR00956       458 FFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLL  537 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHH
Confidence            57788888888888898999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCC
Q 025829           81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL  160 (247)
Q Consensus        81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~  160 (247)
                      ++++..+++.+++.++++++||...|+.+++++..++++++|+++|.++||+ ||+ |++|+||++|++|+++.|||++.
T Consensus       538 ~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~-~~~-W~~yisp~~yafeal~~nef~~~  615 (1394)
T TIGR00956       538 ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG-WSK-WIYYVNPLAYAFESLMVNEFHGR  615 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH-HHH-HHHHcCHHHHHHHHHHHhhhcCC
Confidence            9999999999999999999999999999999999999999999999999998 565 69999999999999999999987


Q ss_pred             ccCCC------------------------------CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829          161 KFDNN------------------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE  210 (247)
Q Consensus       161 ~~~c~------------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~  210 (247)
                      ++.|.                              .+|+++|+..++++.++ .|+|++++++|+++|++++++++++.+
T Consensus       616 ~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~  694 (1394)
T TIGR00956       616 RFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNK  694 (1394)
T ss_pred             cccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            65552                              38899999768888876 999999999999999999999999877


Q ss_pred             ccc
Q 025829          211 KMK  213 (247)
Q Consensus       211 ~~~  213 (247)
                      ...
T Consensus       695 ~~~  697 (1394)
T TIGR00956       695 GAK  697 (1394)
T ss_pred             ccC
Confidence            443

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.9e-34  Score=293.24  Aligned_cols=208  Identities=18%  Similarity=0.340  Sum_probs=192.6

Q ss_pred             ChHhHHHHHHhhhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829            1 MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL   80 (247)
Q Consensus         1 ~~~~~~~~~~~~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l   80 (247)
                      ||+++.+++++++.++.++.||++|+|||+.++|++++|++|++++++|..++.+++|.+|+|||+|++++.++|+.+++
T Consensus       575 ff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l  654 (1470)
T PLN03140        575 LFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLL  654 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHH
Confidence            46777788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCC
Q 025829           81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL  160 (247)
Q Consensus        81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~  160 (247)
                      ++++..+++.+++.++++++++...|+.+++++..++++++||++|.++||+ ||+ |++|+||++|++++++.|||.+.
T Consensus       655 ~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~~-W~~yisp~~Ya~eal~~NEf~~~  732 (1470)
T PLN03140        655 LVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN-WWE-WAYWVSPLSYGFNALAVNEMFAP  732 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch-HHH-HHHHhCHHHHHHHHHHHHhccCc
Confidence            9999999999999999999999999999999999999999999999999998 566 59999999999999999999876


Q ss_pred             ccC---C----CCCHHHHHhhhhCcccCc-cchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025829          161 KFD---N----NLDGEQVLRDKWQLQMGY-SKWVDLAILFGMVVFYRLVFLGIIKTVEK  211 (247)
Q Consensus       161 ~~~---c----~~~g~~~L~~~~~~~~~~-~~~~~~~iL~~~~i~f~~l~~~~l~~~~~  211 (247)
                      .+.   |    ..+|+++|+. +|++.++ +.|.++++|++++++|++++++++++.+.
T Consensus       733 ~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~  790 (1470)
T PLN03140        733 RWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP  790 (1470)
T ss_pred             cccCcccCCCCcccHHHHHHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            432   2    3689999977 8887653 47999999999999999999999998773

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=4.3e-32  Score=276.27  Aligned_cols=202  Identities=18%  Similarity=0.273  Sum_probs=181.2

Q ss_pred             HHHHHHhhhcchhhhhHHHHH-HHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHH-------HH
Q 025829            5 SYLTFMTIGGFPSFVEDMKVF-ERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQH-------FI   76 (247)
Q Consensus         5 ~~~~~~~~~~i~~f~~er~v~-~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~-------f~   76 (247)
                      ....+....++|.|+.||.++ +||+++|+|++.+|++|++++|+|+.++.+++|.+++||++|++++...       |+
T Consensus      1138 ~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~ 1217 (1394)
T TIGR00956      1138 VLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGV 1217 (1394)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHH
Confidence            333344456889999999997 8999999999999999999999999999999999999999999877655       89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHh
Q 025829           77 YFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNE  156 (247)
Q Consensus        77 ~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~  156 (247)
                      .+++++++..+++.++|+++++++|+...|+.+++++..++++|||+++|.++||. +|+ |++|+||++|++++++.++
T Consensus      1218 ~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~l~~~~ 1295 (1394)
T TIGR00956      1218 LFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQALLSTG 1295 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 788 5999999999999999999


Q ss_pred             hCCCccCCC--------------------------------------------CCHHHHHhhhhCcccCccchhhHHHHH
Q 025829          157 FEGLKFDNN--------------------------------------------LDGEQVLRDKWQLQMGYSKWVDLAILF  192 (247)
Q Consensus       157 f~~~~~~c~--------------------------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~  192 (247)
                      |+|.+..|.                                            .+|+++|+. ++++.++ .|+|+++++
T Consensus      1296 ~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~~-~w~~~~i~~ 1373 (1394)
T TIGR00956      1296 LADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYSG-RWRNFGIFI 1373 (1394)
T ss_pred             cCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCcccc-cccchhhhh
Confidence            988764331                                            489999998 7888876 999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q 025829          193 GMVVFYRLVFLGIIKTVEK  211 (247)
Q Consensus       193 ~~~i~f~~l~~~~l~~~~~  211 (247)
                      ++.+++ ++++++++++.|
T Consensus      1374 ~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956      1374 AFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred             HHHHHH-HHHHHhhheEEE
Confidence            999877 888888887644

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.1e-32  Score=264.69  Aligned_cols=213  Identities=24%  Similarity=0.450  Sum_probs=197.5

Q ss_pred             ChHhHHHHHHhhhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829            1 MFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL   80 (247)
Q Consensus         1 ~~~~~~~~~~~~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l   80 (247)
                      ||.+.++++.+++.++...+.|++++|+|...+|++|++.++..+.++|..++.+.+|..|.|++.|+.+++++|+.+++
T Consensus       497 ffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL  576 (1391)
T KOG0065|consen  497 FFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFL  576 (1391)
T ss_pred             HHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCC
Q 025829           81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL  160 (247)
Q Consensus        81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~  160 (247)
                      +++++..|+.++..++++++++...|+.++++.+....+++|+.+|.++||+ ||+ |++|++|+.|++|+++.|||++.
T Consensus       577 ~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~-W~~-Wi~yinPl~Y~fesl~~NEF~~~  654 (1391)
T KOG0065|consen  577 FLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP-WFR-WIAYINPLMYAFESLMSNEFHGR  654 (1391)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccch-HHH-HHHHHCHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999999999999999999999999999999998 555 69999999999999999999998


Q ss_pred             ccCCC---------------------------CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 025829          161 KFDNN---------------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK  213 (247)
Q Consensus       161 ~~~c~---------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~  213 (247)
                      ++.|.                           ..|+++++..|++++.+ .|++++++++|.++|.++..+++.+.+..+
T Consensus       655 ~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~  733 (1391)
T KOG0065|consen  655 RWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLK  733 (1391)
T ss_pred             cCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence            77663                           34667776667777765 999999999999999999999999988665


Q ss_pred             cch
Q 025829          214 PVV  216 (247)
Q Consensus       214 ~~~  216 (247)
                      .+.
T Consensus       734 ~~~  736 (1391)
T KOG0065|consen  734 KSG  736 (1391)
T ss_pred             ccc
Confidence            543

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.4e-32  Score=254.72  Aligned_cols=209  Identities=29%  Similarity=0.632  Sum_probs=192.1

Q ss_pred             hHhHHHHHHh-hhcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829            2 FVASYLTFMT-IGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL   80 (247)
Q Consensus         2 ~~~~~~~~~~-~~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l   80 (247)
                      |++...++.+ +++++.|+.||++|.||+.+|+|+.++|++|+.++++|+.++.+++|..++|||.|++++..+|..+++
T Consensus       395 ~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l  474 (613)
T KOG0061|consen  395 FILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLL  474 (613)
T ss_pred             HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence            5566666665 468999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCC-
Q 025829           81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG-  159 (247)
Q Consensus        81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~-  159 (247)
                      ++++..+++.++|+++++..||...|+.+++++..++++++|++++.+++|+ +|+ |++|+|+.||++|+++.|+|.+ 
T Consensus       475 ~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~-~~~-w~~~~S~~ry~~e~l~~n~~~~~  552 (613)
T KOG0061|consen  475 IILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK-YFR-WISYLSYFRYAFEALLINQFSGG  552 (613)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH-HHH-HHHHHhHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999998 454 6999999999999999999995 


Q ss_pred             -Ccc------CCCCCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829          160 -LKF------DNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP  214 (247)
Q Consensus       160 -~~~------~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~  214 (247)
                       .+|      .|..+|.+++++ .+++.++ .|.|+.+++++.++|+++++++++++.+.++
T Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~  612 (613)
T KOG0061|consen  553 SSRCFLSGNLCCESTGEDVLKQ-LGFEDSS-FWLDLLVLLAFIVFFRVLGYLALRFRVKRKR  612 (613)
T ss_pred             ccccccCcCCcccccHHHHHHh-cCCcccc-cchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence             222      356899999999 7887765 9999999999999999999999999887654

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=1.7e-25  Score=218.77  Aligned_cols=196  Identities=21%  Similarity=0.324  Sum_probs=174.9

Q ss_pred             hhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 025829           16 PSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI   95 (247)
Q Consensus        16 ~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~   95 (247)
                      +.+..||.+++||+.+|+||+.+|++|++++|+|+.++++++|.++.|+++|+..+..+++.+++..+++.++...+|++
T Consensus      1176 ~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm 1255 (1391)
T KOG0065|consen 1176 PAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMM 1255 (1391)
T ss_pred             hHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCC----------
Q 025829           96 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN----------  165 (247)
Q Consensus        96 is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~----------  165 (247)
                      +.+++||.+.|..+.+++.....+|||++.|++.||. ||. |++|+||..|.+++++..+++|.+..|.          
T Consensus      1256 ~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp 1333 (1391)
T KOG0065|consen 1256 LVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPP 1333 (1391)
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCC
Confidence            9999999999999999999999999999999999998 888 5999999999999999999999887774          


Q ss_pred             --CCHHHHHhhhhC----cccCccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 025829          166 --LDGEQVLRDKWQ----LQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP  214 (247)
Q Consensus       166 --~~g~~~L~~~~~----~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~  214 (247)
                        .+-.++++..+|    +.++. ....-.+.+++.+++.+++.+..++.++.|+
T Consensus      1334 ~g~tcge~m~~~~~~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1334 SGQTCGEFMEDFFGEGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred             CCcCHHHHHHHHhccCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence              355678888777    65553 3444456677888999999999998887654

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.65  E-value=3.9e-18  Score=140.06  Aligned_cols=141  Identities=28%  Similarity=0.416  Sum_probs=130.1

Q ss_pred             hcchhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHH
Q 025829           13 GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL   92 (247)
Q Consensus        13 ~~i~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l   92 (247)
                      +......+||..+.||+.++.|++.+|+++|.+.+++..++..+++..+.+.+.|++.+  ++..+.+.+++..+++.++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~  147 (210)
T PF01061_consen   70 GSSISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGL  147 (210)
T ss_pred             cchhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheeccccccccccccc
Confidence            34478999999999999999999999999999999999999999999999999998766  6777888888999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhh
Q 025829           93 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF  157 (247)
Q Consensus        93 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f  157 (247)
                      |.+++.++++.+.+..+.+.+..+++++||.+.|.+++|+  |..|+.+++|++|+.|+++.++|
T Consensus       148 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  148 GLLLAALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             ccccccchhhhhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999997  55569999999999999988765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.64  E-value=5.7e-15  Score=122.38  Aligned_cols=151  Identities=14%  Similarity=0.052  Sum_probs=123.4

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 025829           34 YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI  113 (247)
Q Consensus        34 Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~  113 (247)
                      -+.+.++++|.+...+..+++.++...+.+++.|+++.  +++..++..++..++..++|..++...++...+  .....
T Consensus        57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~  132 (208)
T TIGR03062        57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVL  132 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHH
Confidence            47788999999999999999999999999998898753  567777888889999999999999999876543  34444


Q ss_pred             HHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHHHHH
Q 025829          114 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFG  193 (247)
Q Consensus       114 ~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~  193 (247)
                      ..++++++|.+.|.+++|+  |.+|+.+++|++|+.+++....+++.                   .. +.|.++.++++
T Consensus       133 ~~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~~-------------------~~-~~~~~~~~L~~  190 (208)
T TIGR03062       133 LVLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGGN-------------------DG-TLWQAVAVLLL  190 (208)
T ss_pred             HHHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCCc-------------------HH-HHHHHHHHHHH
Confidence            5577778999999999998  55569999999999999977665331                   11 26889999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 025829          194 MVVFYRLVFLGIIKTVE  210 (247)
Q Consensus       194 ~~i~f~~l~~~~l~~~~  210 (247)
                      +.+++.+++...+|+++
T Consensus       191 ~~~v~~~la~~~~~~~~  207 (208)
T TIGR03062       191 ILVVFLALSLLSARRKR  207 (208)
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            99999998888776544

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.52  E-value=1.1e-12  Score=112.05  Aligned_cols=163  Identities=18%  Similarity=0.142  Sum_probs=125.6

Q ss_pred             HHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 025829           23 KVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMM   94 (247)
Q Consensus        23 ~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~   94 (247)
                      ..+.|||++|.+        ++..+++||++.+....+++.++...+.+. .|..+ ..+........++..+...++|.
T Consensus        80 ~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~-~~~~l~~~~~~ll~~l~~~~lg~  157 (253)
T TIGR01291        80 ATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIE-WWSLIYILPVIALTGLAFASLSM  157 (253)
T ss_pred             HHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhch-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            345666666664        789999999999988887877765555543 34433 34455555566677788889999


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhh
Q 025829           95 IVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRD  174 (247)
Q Consensus        95 ~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~  174 (247)
                      +++...++.+.+..+.+.+..+++++||.+.|.+.+|+  |.+++.+++|++|..|++....+++               
T Consensus       158 ~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~g~---------------  220 (253)
T TIGR01291       158 LVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVMLGG---------------  220 (253)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHhCC---------------
Confidence            99999999999999999999999999999999999998  5556999999999999987654422               


Q ss_pred             hhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 025829          175 KWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTV  209 (247)
Q Consensus       175 ~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~  209 (247)
                          +.. +.+.++++++++.+++..++...+|++
T Consensus       221 ----~~~-~~~~~~~~l~~~~vv~~~la~~~fr~~  250 (253)
T TIGR01291       221 ----PGT-QVGLHLGALCLYAVVPFFISAALLRRR  250 (253)
T ss_pred             ----CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                111 245778899999988888887766654

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.51  E-value=1.5e-12  Score=109.94  Aligned_cols=151  Identities=16%  Similarity=0.067  Sum_probs=122.5

Q ss_pred             CCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 025829           31 NGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITG  110 (247)
Q Consensus        31 ~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~  110 (247)
                      ....+...++++|.+.+.+..+++.++...+.+++.+.+.  ..+....+...+...+..++|.+++...+|.+.+..+.
T Consensus        84 ~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~  161 (236)
T TIGR01247        84 VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIM  161 (236)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3344789999999999999999999988888888777543  34555555666677788999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHH
Q 025829          111 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI  190 (247)
Q Consensus       111 ~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i  190 (247)
                      +.+..++.++||.+.|.+.+|+  |.+|+.+++|.+|+.|++.....++..                  .. +.+.++++
T Consensus       162 ~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~~~~~------------------~~-~~~~~~~~  220 (236)
T TIGR01247       162 SMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLAGVSP------------------TF-PLEQDLLV  220 (236)
T ss_pred             HHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHhCCCc------------------cc-chHHHHHH
Confidence            9999999999999999999998  555699999999999998654332211                  12 36789999


Q ss_pred             HHHHHHHHHHHHHH
Q 025829          191 LFGMVVFYRLVFLG  204 (247)
Q Consensus       191 L~~~~i~f~~l~~~  204 (247)
                      ++++.+++..++..
T Consensus       221 l~~~~~~~~~l~~~  234 (236)
T TIGR01247       221 LTLLAVIFVGIAAV  234 (236)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988887764

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.47  E-value=3.5e-12  Score=107.53  Aligned_cols=151  Identities=11%  Similarity=0.058  Sum_probs=110.5

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHH
Q 025829           34 YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVP---NYLTGIITG  110 (247)
Q Consensus        34 Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~---~~~~a~~~~  110 (247)
                      .++..|+++|.+...+..+++..+.. +.++..|++.... ....++...+....+.+++.+++.+.+   +.+.+..+.
T Consensus        76 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~  153 (232)
T TIGR00025        76 LPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVA  153 (232)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            38999999999988888777765554 4455678865433 233334444555566677777777764   455557788


Q ss_pred             HHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHH
Q 025829          111 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI  190 (247)
Q Consensus       111 ~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i  190 (247)
                      +.+..++.++||.+.|.+++|+  |.+|+.+++|++|+.+++.....++.+                  .+ ..+.++.+
T Consensus       154 ~~~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~~~------------------~~-~~~~~~~~  212 (232)
T TIGR00025       154 NLVWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVSVD------------------TF-GAVRDLVV  212 (232)
T ss_pred             HHHHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCCCC------------------hh-hHHHHHHH
Confidence            8889999999999999999998  666799999999999998765443322                  12 26788889


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 025829          191 LFGMVVFYRLVFLGIIK  207 (247)
Q Consensus       191 L~~~~i~f~~l~~~~l~  207 (247)
                      ++++.+++..++...+|
T Consensus       213 l~~~~~v~~~la~~~~~  229 (232)
T TIGR00025       213 VLAFWVALAALAAIRLR  229 (232)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99998888777776554

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.32  E-value=1.5e-10  Score=99.03  Aligned_cols=157  Identities=13%  Similarity=0.117  Sum_probs=117.1

Q ss_pred             CCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 025829           33 HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAG  112 (247)
Q Consensus        33 ~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~  112 (247)
                      -.+...+.+++++......+++.++...+.....|.++.  .........++........|.+++...++.+....+.+.
T Consensus       100 p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~  177 (257)
T PRK15066        100 PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTF  177 (257)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            358889999999998888777776666666555566432  233333333343444445588999888888888889999


Q ss_pred             HHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHHHH
Q 025829          113 IQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILF  192 (247)
Q Consensus       113 ~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~  192 (247)
                      +..+++..||.+.|.+++|+  |.+|+.+++|++|..|++......+                   +. .+.|.++++++
T Consensus       178 ~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~g~-------------------~~-~~~~~~l~~l~  235 (257)
T PRK15066        178 VLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFLGI-------------------SD-VPLWLAFAVLL  235 (257)
T ss_pred             HHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHcCC-------------------CC-ccHHHHHHHHH
Confidence            99999999999999999998  6667999999999999997654421                   11 12578899999


Q ss_pred             HHHHHHHHHHHHHHHhhhccc
Q 025829          193 GMVVFYRLVFLGIIKTVEKMK  213 (247)
Q Consensus       193 ~~~i~f~~l~~~~l~~~~~~~  213 (247)
                      ++.+++..++...+|++++.|
T Consensus       236 ~~~~v~~~la~~~~~r~~~~~  256 (257)
T PRK15066        236 VFIVVLYLLAWYLLERGRGLR  256 (257)
T ss_pred             HHHHHHHHHHHHHHHhhcccC
Confidence            999999989988877655543

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.25  E-value=1e-09  Score=93.64  Aligned_cols=149  Identities=10%  Similarity=0.028  Sum_probs=112.2

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 025829           34 YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI  113 (247)
Q Consensus        34 Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~  113 (247)
                      .+...+.++|.+.+....+++.++...+.+. .|.+.+..+++.......+......++|.+++.+.++.+.+..+.+.+
T Consensus        99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~  177 (253)
T TIGR03861        99 LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV  177 (253)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3788899999999998888877665555543 366544344444445556677778899999999999988888888889


Q ss_pred             HHHHHHhcccccCCCCC---CcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHH
Q 025829          114 QGLMILGGGFFRLPNDL---PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI  190 (247)
Q Consensus       114 ~~~~~l~sG~~~~~~~i---P~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i  190 (247)
                      ..+++.+||.+.|.+.+   |+  |.+|+.+++|++|..|++.....++                      . .|..+..
T Consensus       178 ~~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~g~----------------------~-~~~~~~~  232 (253)
T TIGR03861       178 IFPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALYGQ----------------------L-NLPALGW  232 (253)
T ss_pred             HHHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHhCC----------------------c-chhHHHH
Confidence            99999999999998777   65  5566999999999999997543211                      1 2456677


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 025829          191 LFGMVVFYRLVFLGIIKT  208 (247)
Q Consensus       191 L~~~~i~f~~l~~~~l~~  208 (247)
                      +.++.+++..++...+|+
T Consensus       233 ~~~~~~v~~~~~~~~fr~  250 (253)
T TIGR03861       233 TLGATTLFTLLAFWGFDP  250 (253)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            778888777777776543

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=99.22  E-value=2.3e-10  Score=90.40  Aligned_cols=133  Identities=11%  Similarity=0.008  Sum_probs=97.1

Q ss_pred             hhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHH---HHHHHHHHHHHHHHHH
Q 025829           17 SFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY---FVLLLFACMLLVESLM   93 (247)
Q Consensus        17 ~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~---~~l~~~l~~~~~~~lg   93 (247)
                      ...+|+..++|-+..-. +.++++++|++......+++.++...+.+. .|.+.+. .+..   ..++..+.......+|
T Consensus        13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~   89 (152)
T TIGR01248        13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALV   89 (152)
T ss_pred             HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555444 899999999999999999998888888854 4887653 3332   2223344445555666


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHH
Q 025829           94 MIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKN  155 (247)
Q Consensus        94 ~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~  155 (247)
                      ..++...++.+. ....+.+..++.++||.+.|.+++|+  |.+|+.+++|++|+.+++...
T Consensus        90 ~~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~~  148 (152)
T TIGR01248        90 MAMALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACADL  148 (152)
T ss_pred             HHHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHHH
Confidence            666665555554 44457788899999999999999998  888899999999999999753

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=99.17  E-value=1.6e-09  Score=92.43  Aligned_cols=155  Identities=19%  Similarity=0.256  Sum_probs=118.1

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHH
Q 025829           35 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVA-SLVPNYLTGIITGAGI  113 (247)
Q Consensus        35 ~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is-~~~~~~~~a~~~~~~~  113 (247)
                      +...+++++.+.......+...+...+..+..|.. ...++........+......++|.+++ ...++.+.+..+++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~  207 (286)
T COG0842         129 SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLL  207 (286)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            43567777777777666666666666666666642 345566666667777778888888666 3666788888888899


Q ss_pred             HHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHHHHH
Q 025829          114 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFG  193 (247)
Q Consensus       114 ~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~  193 (247)
                      ..++.+++|.+.|.+.+|+  |..|+.++.|.+|+.+++......+...                  + +.+.++.++++
T Consensus       208 ~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~~~------------------~-~~~~~~~~l~~  266 (286)
T COG0842         208 ILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGWRN------------------D-GIWISLLILLL  266 (286)
T ss_pred             HHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCCch------------------h-hHHHHHHHHHH
Confidence            9999999999999999998  5667999999999999997655543221                  1 27889999999


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 025829          194 MVVFYRLVFLGIIKTVEK  211 (247)
Q Consensus       194 ~~i~f~~l~~~~l~~~~~  211 (247)
                      +.+++.+++...+|++.+
T Consensus       267 ~~~v~~~~~~~~~~~~~~  284 (286)
T COG0842         267 FAVVFLLLGLLLLRRRRK  284 (286)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999998877655

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.56  E-value=1.2e-07  Score=69.93  Aligned_cols=50  Identities=16%  Similarity=0.371  Sum_probs=45.7

Q ss_pred             CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 025829          166 LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVV  216 (247)
Q Consensus       166 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~~~~  216 (247)
                      .+|+++|+..|++..+| .|+|++|+++|+++|.++.++++.+.+..+.+-
T Consensus        31 V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~   80 (103)
T PF06422_consen   31 VSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGG   80 (103)
T ss_pred             EeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence            68999999879999988 999999999999999999999999888777654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=98.50  E-value=2.1e-08  Score=87.47  Aligned_cols=158  Identities=23%  Similarity=0.270  Sum_probs=0.0

Q ss_pred             hhhhHHHHHH--HHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCc---ccccHHHHHHHHHHHHHHHHHHHH
Q 025829           17 SFVEDMKVFE--RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPG---LHEGYQHFIYFVLLLFACMLLVES   91 (247)
Q Consensus        17 ~f~~er~v~~--RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g---~~~~~~~f~~~~l~~~l~~~~~~~   91 (247)
                      ...+||.-=.  |-+.+|. +...|+++|.+......++..++...+   ..|   ++  ..++...++..++..++..+
T Consensus       181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~--~~~~~~~~l~~~l~~~~~~~  254 (344)
T PF12698_consen  181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIP--FGNFLLLLLLLLLFSLAFIS  254 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCc--ccchHHHHHHHHHHHHHHHH
Confidence            3455555433  3345555 899999999999999998888776664   444   43  33666666788888899999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHH
Q 025829           92 LMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQV  171 (247)
Q Consensus        92 lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~  171 (247)
                      +|.+++.++++...+..+..++..++...+|...|.+++|+ +.+ ++.++.|..|..+++....+.+            
T Consensus       255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~P~~~~~~~~~~~~~~~------------  320 (344)
T PF12698_consen  255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS-FLQ-WISSFLPFYWFIQGLRNIIYGD------------  320 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-HHH-HHHHHhhHHHHHHHHHHHHHhc------------
Confidence            99999999999999988888887777777788888889998 445 5888999999988885433211            


Q ss_pred             HhhhhCcccCccchhhHHHHHHHHHHHHHHHH
Q 025829          172 LRDKWQLQMGYSKWVDLAILFGMVVFYRLVFL  203 (247)
Q Consensus       172 L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~  203 (247)
                              .. +.+.++++++++.+++.+++.
T Consensus       321 --------~~-~~~~~~~~l~~~~~v~~~l~~  343 (344)
T PF12698_consen  321 --------WS-EIWISLIILLLFAVVYLLLAI  343 (344)
T ss_dssp             --------------------------------
T ss_pred             --------HH-HHHHHHHHHHHHHHHHHHHHh
Confidence                    11 256788888888887776664

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.46  E-value=9.5e-06  Score=68.89  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             HHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhh--hhhhhccCcc---cccHHHHHHHHHHHHHHHHHH
Q 025829           23 KVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIP--GAIVYYLPGL---HEGYQHFIYFVLLLFACMLLV   89 (247)
Q Consensus        23 ~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~--~~i~y~~~g~---~~~~~~f~~~~l~~~l~~~~~   89 (247)
                      ..+-|||++|+.        +.+.++++|.++......+..+..  ........|.   +.+.+.+....+..++...+.
T Consensus        71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  150 (240)
T TIGR03518        71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY  150 (240)
T ss_pred             HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence            456699999985        789999999999876544433211  1111111222   124455555556666777788


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCC--CcccccccccccCHHHHHHHHHHHHhhCCCccCCCCC
Q 025829           90 ESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDL--PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLD  167 (247)
Q Consensus        90 ~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~i--P~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~  167 (247)
                      .++|.++|++.+++..|..++..+...+.+  |... ..++  |+  |..|+.++||.+|..+...     |        
T Consensus       151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l~~--~~~~-l~~~~~~~--~~~~l~~~sp~~~~~~~~~-----g--------  212 (240)
T TIGR03518       151 TAIGLFASSLTENQIVAFIIAVFLCFLFYF--GFDG-LASLLWGG--SAYTISELGLSYHYESISR-----G--------  212 (240)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHHH--HHHH-Hhhhcchh--HHHHHHHcCHHHHHHHHHc-----C--------
Confidence            999999999999988887666554333322  2211 2334  54  5667999999888765441     1        


Q ss_pred             HHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHh
Q 025829          168 GEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT  208 (247)
Q Consensus       168 g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~  208 (247)
                                   .. .+.++...+.+++++..++...++.
T Consensus       213 -------------~i-~~~~~v~~~~~~~~~l~l~~~~~~~  239 (240)
T TIGR03518       213 -------------VI-DSRDVIYFLSITVLFLALTKLQLKS  239 (240)
T ss_pred             -------------cc-cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence                         01 2466777778887787777776554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.25  E-value=0.00016  Score=62.09  Aligned_cols=167  Identities=14%  Similarity=0.086  Sum_probs=117.1

Q ss_pred             hhhhhHHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 025829           16 PSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI   95 (247)
Q Consensus        16 ~~f~~er~v~~RE~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~   95 (247)
                      .++.....+..|-+    .++..+.+++++.+.....+..++....+-+..+. + ..++........+..+.+.++|.+
T Consensus        91 ~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~-~-s~~~l~~~~~l~~l~l~~~g~~l~  164 (263)
T COG1682          91 GSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVE-P-SWHWLLLLPALLLLILFSVGLGLI  164 (263)
T ss_pred             HHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443222    38889999999999988777776655555554444 3 455666666777778888889999


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhh
Q 025829           96 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDK  175 (247)
Q Consensus        96 is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~  175 (247)
                      +|.++--..--..+.+.+..+++..+|.+.|.+.+|+ .+++ +.++||+.|.+|......+.+...             
T Consensus       165 ~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~-~~~~-~~~~NP~~~iie~~R~~~~~~~~~-------------  229 (263)
T COG1682         165 LASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPE-QLRE-LVLLNPLTHIIESFRAPLLGGDVP-------------  229 (263)
T ss_pred             HHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccH-HHHH-HHHHCcHHHHHHHHHHHHhCCCcc-------------
Confidence            9888766555556777778888899999999999998 4664 999999999999998777654321             


Q ss_pred             hCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025829          176 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEK  211 (247)
Q Consensus       176 ~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~  211 (247)
                              .+.+....+++.++..+++.+..++.+|
T Consensus       230 --------~~~~~~~~~~~~li~l~vg~~~~~~~~~  257 (263)
T COG1682         230 --------DLHLLVYILLLTLILLFVGLLLFRKFRK  257 (263)
T ss_pred             --------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    2334444455555566677776665444

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=97.90  E-value=0.0005  Score=58.77  Aligned_cols=169  Identities=16%  Similarity=0.229  Sum_probs=97.0

Q ss_pred             HHHHHHHHhCCC--------CchHHHHHHHHHHHhhHHHH---HHHhhhh---hhhccCcccccHHHHHHHHHHHHHHHH
Q 025829           22 MKVFERERLNGH--------YGATAFVFGNTFSALPYLAL---ISLIPGA---IVYYLPGLHEGYQHFIYFVLLLFACML   87 (247)
Q Consensus        22 r~v~~RE~~~g~--------Y~~~~y~la~~l~~ip~~~~---~~~i~~~---i~y~~~g~~~~~~~f~~~~l~~~l~~~   87 (247)
                      -..+-+|+++|+        ++...++++|.+......++   ...+...   ......|.+.+..++....+......+
T Consensus        87 ~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (277)
T PF12679_consen   87 SDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL  166 (277)
T ss_pred             HHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            346678888887        48999999999999887432   2211111   111123444455555544443333333


Q ss_pred             ---HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccc-CCCCCCccccc--ccccccCHHHHHHHHHHHHhhCCCc
Q 025829           88 ---LVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFR-LPNDLPHPFWK--YPLYYIAFHKYAYQGMFKNEFEGLK  161 (247)
Q Consensus        88 ---~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~iP~~~w~--~wl~~isp~~y~~~~l~~~~f~~~~  161 (247)
                         +..+++.++|++.++...|...+..+............ ..++.....|.  ..+.+++|..+. +.+.....++..
T Consensus       167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~  245 (277)
T PF12679_consen  167 AVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPF-NLLIGSILGGGF  245 (277)
T ss_pred             HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHH-HHHHHHhhcccc
Confidence               46899999999999888888877766555533333332 21222110011  114667776543 222222221110


Q ss_pred             cCCCCCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 025829          162 FDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTV  209 (247)
Q Consensus       162 ~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~  209 (247)
                      .                +  ...|.+++.++++.+++..+++..+++|
T Consensus       246 ~----------------~--~~~~~~~~~~~~~~~v~l~la~~~F~rr  275 (277)
T PF12679_consen  246 V----------------W--LSTWPSLLILLAYTLVFLALAYYRFQRR  275 (277)
T ss_pred             c----------------h--hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            0                0  1267889999999999999999766544

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=97.90  E-value=0.0013  Score=56.69  Aligned_cols=107  Identities=16%  Similarity=0.053  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCC
Q 025829           81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGL  160 (247)
Q Consensus        81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~  160 (247)
                      ..++..+.+.++|+++|++..-..-...+...+..+++..||.+.+.+.+|+ .++ ++-+.||+.+.+|+.....+++.
T Consensus       154 ~~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~-~~~-~il~~NPl~~~ie~~R~~~~~~~  231 (264)
T PRK15176        154 GMVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPY-SLL-SIFSWNPLLHANEIVREGMFEGY  231 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcH-HHH-HHHHHCcHHHHHHHHHHHHhcCc
Confidence            3444566677888888776444333444566777888889999999999998 345 48899999999999988777542


Q ss_pred             ccCCCCCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829          161 KFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE  210 (247)
Q Consensus       161 ~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~  210 (247)
                      .                     ..+.+...++++.++..+++.+..|+.+
T Consensus       232 ~---------------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~  260 (264)
T PRK15176        232 H---------------------SLYLEPFYPLAFSATLFLAGLIFHLICD  260 (264)
T ss_pred             C---------------------ccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            1                     0123446667777777777877766544

>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.45  E-value=0.00028  Score=47.22  Aligned_cols=48  Identities=19%  Similarity=0.463  Sum_probs=40.3

Q ss_pred             CCHHHHHhhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 025829          166 LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK  213 (247)
Q Consensus       166 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~~~~  213 (247)
                      +-|+++|+.+.-+.++++.|..+++|++++++|+++..++|.+.+...
T Consensus        11 tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~   58 (65)
T PF08370_consen   11 TLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG   58 (65)
T ss_pred             cHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            679999999433444557899999999999999999999999988653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=97.12  E-value=0.0086  Score=54.33  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=91.8

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccc--cH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 025829           35 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHE--GY--QHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITG  110 (247)
Q Consensus        35 ~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~--~~--~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~  110 (247)
                      ++..+++-|.+......++.+++++.+. +..+.+.  ..  +.|..+|...++.....-...-.+.++.+.+-  +.+.
T Consensus       240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~  316 (382)
T PF12051_consen  240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW  316 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence            8889999999999999999999998877 4555433  22  45787777766654443222222233332222  3333


Q ss_pred             HHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhHHH
Q 025829          111 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI  190 (247)
Q Consensus       111 ~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i  190 (247)
                      .+..+++.+.+ .+.|.+-.|. |+|| .+=+ |++.+++++....|++.+                   .+ ..+++++
T Consensus       317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~~~-------------------~~-lg~n~gi  372 (382)
T PF12051_consen  317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDTCK-------------------GQ-LGRNYGI  372 (382)
T ss_pred             HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCCCc-------------------cc-ccchHHH
Confidence            34455555666 5568889998 7885 5555 999999999888664422                   22 7789999


Q ss_pred             HHHHHHHH
Q 025829          191 LFGMVVFY  198 (247)
Q Consensus       191 L~~~~i~f  198 (247)
                      |++|.++-
T Consensus       373 l~aw~~v~  380 (382)
T PF12051_consen  373 LFAWIVVN  380 (382)
T ss_pred             HHHHHHHH
Confidence            99998753

It is found in bacterial and eukaryotic proteins.

>COG1511 Predicted membrane protein [Function unknown]

Probab=97.04  E-value=0.014  Score=57.66  Aligned_cols=150  Identities=19%  Similarity=0.191  Sum_probs=105.3

Q ss_pred             HhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 025829           29 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGII  108 (247)
Q Consensus        29 ~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~  108 (247)
                      ...+.+....+++++.+..+-....+..+-...-+++.|.... ..+. +++..+.+.+++..+-..+..++.  ..+..
T Consensus       610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~-~~~~-~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~  685 (780)
T COG1511         610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK-SPLL-LVLFAIFSSVAFMIIIYLLVSLFG--NPGKF  685 (780)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC-chhH-HHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence            6777788999999999999999999998888888888887543 2333 333333444444444444444444  45566


Q ss_pred             HHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHHhhhhCcccCccchhhH
Q 025829          109 TGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDL  188 (247)
Q Consensus       109 ~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~  188 (247)
                      +..++.+++...+|-..|.+..|. +.+. +...-|++|++..+.-..                   .+...+. .|.++
T Consensus       686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~-------------------~~~~~~~-~~~~~  743 (780)
T COG1511         686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVI-------------------GGPIPSN-LWSGL  743 (780)
T ss_pred             HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhh-------------------ccCchHH-HhhhH
Confidence            777788888999999999999998 6665 999999999977764221                   1222233 67888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 025829          189 AILFGMVVFYRLVFLG  204 (247)
Q Consensus       189 ~iL~~~~i~f~~l~~~  204 (247)
                      .++.++.++|.+...+
T Consensus       744 ~~~~~~~i~~~~~~~~  759 (780)
T COG1511         744 LALIGFLILFIIGGLF  759 (780)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888877764433

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=96.84  E-value=0.042  Score=47.14  Aligned_cols=174  Identities=16%  Similarity=0.168  Sum_probs=113.0

Q ss_pred             HHHHHHHhCCC--------CchHHHHHHHHHHHhhHHHHHHHhhh--h-hhhccCcccc---cHHHHHHHHHHHHHHHHH
Q 025829           23 KVFERERLNGH--------YGATAFVFGNTFSALPYLALISLIPG--A-IVYYLPGLHE---GYQHFIYFVLLLFACMLL   88 (247)
Q Consensus        23 ~v~~RE~~~g~--------Y~~~~y~la~~l~~ip~~~~~~~i~~--~-i~y~~~g~~~---~~~~f~~~~l~~~l~~~~   88 (247)
                      .++-+|+++|+        +++..-++||.+.......+..++..  . ......|...   +......+.....+....
T Consensus        81 ~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (278)
T COG1277          81 DLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLV  160 (278)
T ss_pred             chhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence            45668888888        47889999999998877666655554  1 2333334333   223456677778888888


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccC------CCCCCcccccccccccCHHHHHHHHHHHHhhCC-Cc
Q 025829           89 VESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRL------PNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG-LK  161 (247)
Q Consensus        89 ~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~------~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~-~~  161 (247)
                      ..+.+.+++...++...+..++........+..+....      ...-|   ....+...+|.++..+......... .+
T Consensus       161 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (278)
T COG1277         161 LLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILLQSGFS  237 (278)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhccccccc
Confidence            89999999999999988888777766665554444322      11111   1122778889998888776544421 00


Q ss_pred             cCCCCCHHHHHhhhhCccc-CccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025829          162 FDNNLDGEQVLRDKWQLQM-GYSKWVDLAILFGMVVFYRLVFLGIIKTVE  210 (247)
Q Consensus       162 ~~c~~~g~~~L~~~~~~~~-~~~~~~~~~iL~~~~i~f~~l~~~~l~~~~  210 (247)
                      -    ++       .+... ....|.++.+++++.+++..++++.+++++
T Consensus       238 ~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d  276 (278)
T COG1277         238 D----SI-------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD  276 (278)
T ss_pred             c----cc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            0    00       11111 112678899999999999999998777654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.81  E-value=0.12  Score=56.30  Aligned_cols=151  Identities=9%  Similarity=0.081  Sum_probs=97.4

Q ss_pred             HhHHHHHHhhhcchhhhhHHHHHHHHHh--CCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHH
Q 025829            3 VASYLTFMTIGGFPSFVEDMKVFERERL--NGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVL   80 (247)
Q Consensus         3 ~~~~~~~~~~~~i~~f~~er~v~~RE~~--~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l   80 (247)
                      +++...+.....+.....||..=.||.-  =|+ +.+.|++|+.+..+...++..++.+++... ..+ ....++...++
T Consensus       659 ~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~~-~~~-~~~s~~~~lfl  735 (2272)
T TIGR01257       659 MVLAWIYSVSMTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIMH-GRI-LHYSDPFILFL  735 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-Cce-eecCChHHHHH
Confidence            3444444555566667788888788844  355 788999999999887776665554443322 111 23345566677


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccc-ccCCCCCCcccccccccccCHHHHHHHHHHHHhh
Q 025829           81 LLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGF-FRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF  157 (247)
Q Consensus        81 ~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~-~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f  157 (247)
                      ..+++.+....++.++|+++.+...|..++.++.....+--.+ +.-.+.++. ...+.+.-+||.-.++..-....+
T Consensus       736 ~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~-~~~~~~sL~sp~af~~g~~~i~~~  812 (2272)
T TIGR01257       736 FLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTA-DLKTAVSLLSPVAFGFGTEYLVRF  812 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            7888888899999999999999999999988876655442221 112234443 123336777787776655444433

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=95.89  E-value=0.93  Score=38.45  Aligned_cols=79  Identities=16%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             HHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhh-----ccCcccccHHHHHHHHHHHHHHHHHHH
Q 025829           24 VFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVY-----YLPGLHEGYQHFIYFVLLLFACMLLVE   90 (247)
Q Consensus        24 v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y-----~~~g~~~~~~~f~~~~l~~~l~~~~~~   90 (247)
                      +..+|+++|.|        +...+++||.+.-....++..++...+..     ...+-+.+...+....+.+++..+...
T Consensus        67 ~~~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~  146 (248)
T TIGR03733        67 VVEQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLY  146 (248)
T ss_pred             HHHHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34566666665        68899999999887776665553222221     111223344566777777888888899


Q ss_pred             HHHHHHHHhccc
Q 025829           91 SLMMIVASLVPN  102 (247)
Q Consensus        91 ~lg~~is~~~~~  102 (247)
                      .+.+.++....+
T Consensus       147 ~l~l~ls~~~g~  158 (248)
T TIGR03733       147 IIHLFVSFAFGM  158 (248)
T ss_pred             HHHHHHHHHhCC
Confidence            999999988875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=95.81  E-value=0.096  Score=43.68  Aligned_cols=94  Identities=19%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             HHHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 025829           22 MKVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLM   93 (247)
Q Consensus        22 r~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg   93 (247)
                      .+.|.+|+++|..        ++...+++|.+.......+..++...+...+.|.+  ..+...+.+.+.+....-...|
T Consensus        65 ~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~--~~~~~~~~~~l~lgt~gl~~ig  142 (215)
T PF03379_consen   65 NRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLP--ISSWPLLLLSLLLGTLGLAAIG  142 (215)
T ss_pred             hHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHhHHHHHHH
Confidence            4569999999983        57789999999998887777666666666666764  3455666666777777777888


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHH
Q 025829           94 MIVASLVPNYLTGIITGAGIQGLM  117 (247)
Q Consensus        94 ~~is~~~~~~~~a~~~~~~~~~~~  117 (247)
                      -+.+++.-+......+.+++..|+
T Consensus       143 tl~aal~~~~r~~~~Ll~lL~lPl  166 (215)
T PF03379_consen  143 TLLAALAAGARGREILLPLLLLPL  166 (215)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHH
Confidence            888777554444445555554444

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.41  E-value=0.34  Score=41.04  Aligned_cols=162  Identities=15%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             HHHHHhCCCC-----chHHHHHHHHHHHhhHHHHHHHhhh---hhhhccCcc----cccHHHHHHHHHHHHHHHHHHHHH
Q 025829           25 FERERLNGHY-----GATAFVFGNTFSALPYLALISLIPG---AIVYYLPGL----HEGYQHFIYFVLLLFACMLLVESL   92 (247)
Q Consensus        25 ~~RE~~~g~Y-----~~~~y~la~~l~~ip~~~~~~~i~~---~i~y~~~g~----~~~~~~f~~~~l~~~l~~~~~~~l   92 (247)
                      |.||.++|.-     +|..|...+...+.+......+-+.   +..+.+.+-    -++......+.+.+.+....--..
T Consensus        84 f~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~~F~i  163 (268)
T COG4587          84 FEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLLRFLI  163 (268)
T ss_pred             HHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666664     5667777766666554443322111   112222211    112333333333333332233334


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHHHHhhCCCccCCCCCHHHHH
Q 025829           93 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVL  172 (247)
Q Consensus        93 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~~~~f~~~~~~c~~~g~~~L  172 (247)
                      ...+++.+=-.+.|+.+.........+.||.+.|.+-.|+  |..-+--..|+-|.+..=+....               
T Consensus       164 ~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~y~P~~llv---------------  226 (268)
T COG4587         164 QFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLLYTPVMLLV---------------  226 (268)
T ss_pred             HHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhhccHHHHHh---------------
Confidence            4444444434556778888888899999999999999999  54435556677776543222111               


Q ss_pred             hhhhCcccCccchhhHHHHHHHHHHHHHHHHHHHH
Q 025829          173 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIK  207 (247)
Q Consensus       173 ~~~~~~~~~~~~~~~~~iL~~~~i~f~~l~~~~l~  207 (247)
                       .+  .+.+ +.++++++.++|..++..+.-...|
T Consensus       227 -Gk--~s~~-~il~al~v~~~Wl~im~~l~~~lWr  257 (268)
T COG4587         227 -GK--YSGA-QILKALLVQIGWLLIMWLLSRWLWR  257 (268)
T ss_pred             -cc--ccHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11  1222 3788999999998888777766544

>TIGR01190 ccmB heme exporter protein CcmB

Probab=93.61  E-value=0.75  Score=38.25  Aligned_cols=95  Identities=14%  Similarity=0.049  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHH
Q 025829           21 DMKVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL   92 (247)
Q Consensus        21 er~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l   92 (247)
                      -.+.|.+|+++|..        +....+++|.++......+.-.+...+.-.+.|++.  .+.....+.+.+.+..-...
T Consensus        61 l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~i  138 (211)
T TIGR01190        61 LDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFL  138 (211)
T ss_pred             hhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHH
Confidence            45688999999974        788999999999987776666666555555777653  33455666677777777777


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHH
Q 025829           93 MMIVASLVPNYLTGIITGAGIQGLM  117 (247)
Q Consensus        93 g~~is~~~~~~~~a~~~~~~~~~~~  117 (247)
                      |-+.+++.-+......+.+++..|+
T Consensus       139 gtl~aALt~g~r~~~~Ll~lL~lPl  163 (211)
T TIGR01190       139 GAIGAALTVGLKRGGLLLSLLVLPL  163 (211)
T ss_pred             HHHHHHHHHhccCCchHHHHHHHHH
Confidence            7777777554333333444443333

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function

Probab=93.52  E-value=3.8  Score=34.10  Aligned_cols=126  Identities=13%  Similarity=0.089  Sum_probs=73.7

Q ss_pred             HHHHHHHhCCCC--------chHHHHHHHHHHHh-hHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 025829           23 KVFERERLNGHY--------GATAFVFGNTFSAL-PYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLM   93 (247)
Q Consensus        23 ~v~~RE~~~g~Y--------~~~~y~la~~l~~i-p~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg   93 (247)
                      .-+.++.++|..        +...+.+.+-+..- ...++.+++.........+.+.+..++..+.+.+.+......++.
T Consensus        52 ~~i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~  131 (229)
T PF06182_consen   52 WEISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIF  131 (229)
T ss_pred             HHHhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777774        55555555555432 223333333333333345666677777777777777777777777


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHH
Q 025829           94 MIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGM  152 (247)
Q Consensus        94 ~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l  152 (247)
                      .+++..+=-......+.   .....+++|...|.+-.|+ +.+..+.++.|..+....=
T Consensus       132 ~~~~~laFw~~~~~~~~---~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~P  186 (229)
T PF06182_consen  132 FIIGLLAFWFTESWGLS---YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYVP  186 (229)
T ss_pred             HHHHHHHHHHhcchHHH---HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHHH
Confidence            76665532222112222   3334458999999999998 4555466668888775443

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=92.45  E-value=2.2  Score=34.15  Aligned_cols=91  Identities=25%  Similarity=0.352  Sum_probs=53.5

Q ss_pred             HHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhh---ccCcc-cccHHH----HHHHHHHHHHHH
Q 025829           23 KVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVY---YLPGL-HEGYQH----FIYFVLLLFACM   86 (247)
Q Consensus        23 ~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y---~~~g~-~~~~~~----f~~~~l~~~l~~   86 (247)
                      ..+.+|+++|++        +...++.+|.++.....++..++...+.+   .+.+. +.+...    .....+...+..
T Consensus        68 ~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
T PF12730_consen   68 LLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLS  147 (232)
T ss_pred             HHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHH
Confidence            356788888874        78999999999998777666555333322   22221 222222    223333444444


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHH
Q 025829           87 LLVESLMMIVASLVPNYLTGIITGAGIQ  114 (247)
Q Consensus        87 ~~~~~lg~~is~~~~~~~~a~~~~~~~~  114 (247)
                      .....+ .+++...+|...+..++.+..
T Consensus       148 ~~~~~~-~~i~~~~~~~~~~i~~~~~~~  174 (232)
T PF12730_consen  148 LFISLL-LFISSLFRNSIVAIIISILLF  174 (232)
T ss_pred             HHHHHH-HHHHHHHhhHHHHHHHHHHHH
Confidence            445555 778888888666655444433

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=91.65  E-value=2.4  Score=46.80  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             hhHHHHHHH--HHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhccC--cccccHHHHHHHHHHHHHHHHHHHHHHH
Q 025829           19 VEDMKVFER--ERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLP--GLHEGYQHFIYFVLLLFACMLLVESLMM   94 (247)
Q Consensus        19 ~~er~v~~R--E~~~g~Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~--g~~~~~~~f~~~~l~~~l~~~~~~~lg~   94 (247)
                      ..||.-=.|  ..-+|. ++.+|.++..+.++..-++..+++.++.+..-  ++. +..++...+++++++.++...+.+
T Consensus      1702 V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip~tY 1779 (2272)
T TIGR01257      1702 IQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIPMMY 1779 (2272)
T ss_pred             ehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHHHHH
Confidence            445544332  356677 89999999999999988887777665554322  221 234566667788889999999999


Q ss_pred             HHHHhccchHHHHHHHHH
Q 025829           95 IVASLVPNYLTGIITGAG  112 (247)
Q Consensus        95 ~is~~~~~~~~a~~~~~~  112 (247)
                      ++|.+++++..|......
T Consensus      1780 l~SflF~~~~~A~~~~~~ 1797 (2272)
T TIGR01257      1780 PASFLFDVPSTAYVALSC 1797 (2272)
T ss_pred             HHHHhhCCchhHHHHHHH
Confidence            999999999888655443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=91.44  E-value=11  Score=34.49  Aligned_cols=78  Identities=18%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHhhhhhhh---------ccCc--ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Q 025829           34 YGATAFVFGNTFSALPYLALISLIPGAIVY---------YLPG--LHEGYQHFIYFVLLLFACML-LVESLMMIVASLVP  101 (247)
Q Consensus        34 Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y---------~~~g--~~~~~~~f~~~~l~~~l~~~-~~~~lg~~is~~~~  101 (247)
                      -++..++.+|++.-....+.+..++....+         ...+  +......+..+.+...+..+ ...+++.++++.+.
T Consensus       227 vSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~  306 (407)
T COG1668         227 VSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAG  306 (407)
T ss_pred             cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            489999999999999988888666655552         1111  11122233344444444433 44558899999999


Q ss_pred             chHHHHHHHH
Q 025829          102 NYLTGIITGA  111 (247)
Q Consensus       102 ~~~~a~~~~~  111 (247)
                      +.+.|+....
T Consensus       307 ~~k~aq~~~~  316 (407)
T COG1668         307 SIKEAQTLIS  316 (407)
T ss_pred             CHHHHHHHhh
Confidence            9888887776

>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family

Probab=88.97  E-value=13  Score=31.37  Aligned_cols=115  Identities=14%  Similarity=0.162  Sum_probs=62.4

Q ss_pred             HHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhc---cCccc-ccHHHHHHHHHHHHHHHHHHHHH
Q 025829           25 FERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYY---LPGLH-EGYQHFIYFVLLLFACMLLVESL   92 (247)
Q Consensus        25 ~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~---~~g~~-~~~~~f~~~~l~~~l~~~~~~~l   92 (247)
                      ..+|+++|.|        +....++||.+.-....++..++.....+.   ..|.. .+...+....+..++..+....+
T Consensus        63 ~~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l  142 (241)
T TIGR03732        63 HKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPL  142 (241)
T ss_pred             HHHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            3677777765        678999999998877766665554422221   22321 23334555555566666666677


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHHH
Q 025829           93 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMF  153 (247)
Q Consensus        93 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~y~~~~l~  153 (247)
                      -..++... +...+..++    ....+..|.+...+  +  .|     ++.|..|....+.
T Consensus       143 ~l~ls~~~-g~~~si~ig----~~~~li~g~~~~~~--~--~w-----~~~P~s~~~rl~~  189 (241)
T TIGR03732       143 CLFLARKF-GMFVSILVN----LVLGLIFGIVLATK--S--FW-----WLFPYSWPSRLMC  189 (241)
T ss_pred             HHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHcc--C--Ce-----EEechHHHHHHHh
Confidence            77776444 222222222    21233344443221  2  23     4678888887774

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.

>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.84  E-value=15  Score=30.85  Aligned_cols=110  Identities=16%  Similarity=0.205  Sum_probs=69.6

Q ss_pred             HHHHhCCC--------CchHHHHHHHHHHHhhHHHHHHHhhhhhhhc---cCcccccHH--HHHHHHHHHHHHHHHHHHH
Q 025829           26 ERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYY---LPGLHEGYQ--HFIYFVLLLFACMLLVESL   92 (247)
Q Consensus        26 ~RE~~~g~--------Y~~~~y~la~~l~~ip~~~~~~~i~~~i~y~---~~g~~~~~~--~f~~~~l~~~l~~~~~~~l   92 (247)
                      .-|+++|.        ++.+-.|+||+..-+....+..++.....+.   ..|...+..  .++......++.+.--.++
T Consensus        76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l  155 (239)
T COG4200          76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL  155 (239)
T ss_pred             HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            56777777        4788999999999888777776655444443   334433332  2334444455555555667


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHH
Q 025829           93 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHK  146 (247)
Q Consensus        93 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~wl~~isp~~  146 (247)
                      =...+...+|...|..++...  +..+    ....++.|+  |   +-|-+|..
T Consensus       156 Q~wLsm~fknf~~al~igI~l--~a~f----va~~~s~~~--~---~PW~~pi~  198 (239)
T COG4200         156 QFWLSMRFKNFAVALVIGIFL--PALF----VASAESLPV--W---LPWASPIL  198 (239)
T ss_pred             HHHHHHHHHhhhHhHHHHHhH--HHHH----HHhccccCc--c---ccchhhhh
Confidence            777888888888888777766  2221    123456776  3   66666765

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=86.17  E-value=5.8  Score=32.86  Aligned_cols=94  Identities=14%  Similarity=0.120  Sum_probs=64.3

Q ss_pred             HHHHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 025829           22 MKVFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLM   93 (247)
Q Consensus        22 r~v~~RE~~~g~Y--------~~~~y~la~~l~~ip~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg   93 (247)
                      -..|.+|++||.-        ....-+++|+++.-..+.+--.+..-+.+.+.+++  ...+....+.+.+.+-.-+.+|
T Consensus        68 ~rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~g  145 (221)
T COG2386          68 ERLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLG  145 (221)
T ss_pred             HHHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHH
Confidence            3579999999984        56778899999998877777777777778888875  4556666666666666666666


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHH
Q 025829           94 MIVASLVPNYLTGIITGAGIQGLM  117 (247)
Q Consensus        94 ~~is~~~~~~~~a~~~~~~~~~~~  117 (247)
                      -.-+++.-+......+.+++..|.
T Consensus       146 a~gaALtv~lrrgglLl~vlvlPl  169 (221)
T COG2386         146 AVGAALTVGLRRGGLLLSVLVLPL  169 (221)
T ss_pred             HHHHHHHhcCccCCchhhHHHHHH
Confidence            666666544444444444444444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00