Citrus Sinensis ID: 025857

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWILC
cccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHccccEEEEccccHHHHHccccEEEEcccccccccEEcccccEEEEEEEEccHHHHHHHHHHcccccEEEEEccccccccHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccccccccEEEEEEEEEEEEEcccccEEEEEcccccccccccc
cHHHHHHcccccccccccccccccccccccccccccEEEccccccccccccEEEEEcccHHHHHHHHHccccEEEEcccHHHHHHHHHcccEEccEEccccccccccccEEEEEEEEccHHHHHHHHHHHccccEEEEEcccccEccHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEcccccEEEEccHHcccccEEEc
MALLLSSsfvsstqlpfstfntdkwntgrvnknsYCFTMCsvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENqqlaidwstialldplfikegevydsgdrrvgsiievstpqelqqlqpadgqaenividlpdwqvipaenivasfqgsgktvfaISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCslmrpgwilc
malllsssfvsstqlpfstfntdkwntgrvNKNSYCFTMCSvsnsssskpkrvWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLcslmrpgwilc
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCsvsnssssKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWILC
**************LPFSTFNTDKWNTGRVNKNSYCFTMC************VWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV***************AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWIL*
*************QLPFSTFNTD*W****************************WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF*********LSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWILC
MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSV*********RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWILC
****LSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWILC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALLLSSSFVSSTQLPFSTFNTDKWNTGRVNKNSYCFTMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWILC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
A2SU08 345 3-dehydroquinate synthase yes no 0.753 0.539 0.285 2e-19
A0B6K6 362 3-dehydroquinate synthase yes no 0.740 0.505 0.275 1e-15
Q0W131 374 3-dehydroquinate synthase yes no 0.425 0.280 0.398 2e-15
Q12UJ7 379 3-dehydroquinate synthase yes no 0.392 0.255 0.4 5e-14
O67751 331 3-dehydroquinate synthase yes no 0.700 0.522 0.263 3e-13
O26680 374 3-dehydroquinate synthase yes no 0.732 0.483 0.272 3e-13
Q2NI00 359 3-dehydroquinate synthase yes no 0.753 0.518 0.243 3e-13
A4G0J1 361 3-dehydroquinate synthase yes no 0.429 0.293 0.370 4e-13
Q58646 361 3-dehydroquinate synthase yes no 0.437 0.299 0.362 2e-12
A9A8T5 361 3-dehydroquinate synthase yes no 0.429 0.293 0.361 2e-12
>sp|A2SU08|DHQS_METLZ 3-dehydroquinate synthase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=Mlab_1653 PE=3 SV=1 Back     alignment and function desciption
 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 10/196 (5%)

Query: 49  KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
           +   +  + E K ++ +A+E G+   +   E++ L       A+L      +G+      
Sbjct: 11  RADHLQTYDERKAIVASALESGYTHIILRPEDEALRHLGRYTAIL-----ADGKNLMYSG 65

Query: 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
            R+G ++ ++  +E+++         N++I   +W+VIP EN+++ FQ +  +V+   KT
Sbjct: 66  ERIGVLLNLTGAEEMEEAYSLKNAVPNLIISPENWKVIPLENLISRFQNAETSVYICVKT 125

Query: 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDG-RNEVSNLLSLMKATVTRVDVAG 227
           P EA++  + +E G  GIV+   D  A LA    F G RN+   ++ L  A VT++    
Sbjct: 126 PEEARLAFQTMEVGCDGIVI-TPDGPADLAA---FSGIRNDEYPIVDLETAVVTKISTLS 181

Query: 228 MGDRVCVDLCSLMRPG 243
           +GDRVC+D CSL+  G
Sbjct: 182 LGDRVCIDTCSLLERG 197
Catalyzes the oxidative deamination and cyclization of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3-dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis.
Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) (taxid: 410358)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -
>sp|A0B6K6|DHQS_METTP 3-dehydroquinate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_0539 PE=3 SV=2 Back     alignment and function description
>sp|Q0W131|DHQS_UNCMA 3-dehydroquinate synthase OS=Uncultured methanogenic archaeon RC-I GN=UNCMA_03530 PE=3 SV=1 Back     alignment and function description
>sp|Q12UJ7|DHQS_METBU 3-dehydroquinate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2000 PE=3 SV=2 Back     alignment and function description
>sp|O67751|DHQSH_AQUAE 3-dehydroquinate synthase homolog OS=Aquifex aeolicus (strain VF5) GN=aq_1922 PE=3 SV=1 Back     alignment and function description
>sp|O26680|DHQS_METTH 3-dehydroquinate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_580 PE=3 SV=2 Back     alignment and function description
>sp|Q2NI00|DHQS_METST 3-dehydroquinate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_0090 PE=3 SV=1 Back     alignment and function description
>sp|A4G0J1|DHQS_METM5 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_1678 PE=3 SV=1 Back     alignment and function description
>sp|Q58646|DHQS_METJA 3-dehydroquinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1249 PE=1 SV=1 Back     alignment and function description
>sp|A9A8T5|DHQS_METM6 3-dehydroquinate synthase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0943 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
224140959345 predicted protein [Populus trichocarpa] 0.789 0.565 0.769 6e-85
296082881 998 unnamed protein product [Vitis vinifera] 0.781 0.193 0.720 4e-80
359488897 368 PREDICTED: 3-dehydroquinate synthase-lik 0.789 0.529 0.712 5e-79
255552890 419 conserved hypothetical protein [Ricinus 0.866 0.510 0.628 6e-77
449459466 423 PREDICTED: 3-dehydroquinate synthase-lik 0.781 0.456 0.699 5e-76
357439097 392 3-dehydroquinate synthase [Medicago trun 0.975 0.614 0.596 3e-75
357439059330 3-dehydroquinate synthase [Medicago trun 0.817 0.612 0.668 7e-74
356572434 442 PREDICTED: 3-dehydroquinate synthase-lik 0.842 0.470 0.677 7e-73
297818494 426 hypothetical protein ARALYDRAFT_322953 [ 0.789 0.457 0.671 1e-71
79313976 444 uncharacterized protein [Arabidopsis tha 0.789 0.439 0.666 4e-71
>gi|224140959|ref|XP_002323844.1| predicted protein [Populus trichocarpa] gi|222866846|gb|EEF03977.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 150/195 (76%), Positives = 173/195 (88%)

Query: 49  KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
           K KRVWIWTESKQVMT AVERGWNTF+FLS ++QLAIDWS+ + ++PLFI+EGEV D  +
Sbjct: 1   KSKRVWIWTESKQVMTTAVERGWNTFIFLSNHRQLAIDWSSFSFINPLFIEEGEVLDGEN 60

Query: 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
           +RV +I EVSTPQELQQLQP +GQAEN++I+L DWQ+IPAENIVA+FQGS KTV AISKT
Sbjct: 61  KRVATIFEVSTPQELQQLQPENGQAENVIINLLDWQIIPAENIVAAFQGSQKTVLAISKT 120

Query: 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
            SEAQIFLEALE GLGG+VLKVEDV+AV+ LKEY D RNE +NLLSL KAT+TRV VAGM
Sbjct: 121 HSEAQIFLEALEHGLGGVVLKVEDVEAVIKLKEYCDRRNEATNLLSLTKATITRVQVAGM 180

Query: 229 GDRVCVDLCSLMRPG 243
           GDRVCVDLCSLM+PG
Sbjct: 181 GDRVCVDLCSLMKPG 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082881|emb|CBI22182.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488897|ref|XP_002282990.2| PREDICTED: 3-dehydroquinate synthase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552890|ref|XP_002517488.1| conserved hypothetical protein [Ricinus communis] gi|223543499|gb|EEF45030.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449459466|ref|XP_004147467.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] gi|449520920|ref|XP_004167480.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357439097|ref|XP_003589825.1| 3-dehydroquinate synthase [Medicago truncatula] gi|355478873|gb|AES60076.1| 3-dehydroquinate synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357439059|ref|XP_003589806.1| 3-dehydroquinate synthase [Medicago truncatula] gi|355478854|gb|AES60057.1| 3-dehydroquinate synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356572434|ref|XP_003554373.1| PREDICTED: 3-dehydroquinate synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|297818494|ref|XP_002877130.1| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] gi|297322968|gb|EFH53389.1| hypothetical protein ARALYDRAFT_322953 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79313976|ref|NP_001030791.1| uncharacterized protein [Arabidopsis thaliana] gi|222424331|dbj|BAH20122.1| AT3G28760 [Arabidopsis thaliana] gi|332643967|gb|AEE77488.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2098428 444 AT3G28760 [Arabidopsis thalian 0.789 0.439 0.666 2.2e-66
TAIR|locus:2098428 AT3G28760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 130/195 (66%), Positives = 158/195 (81%)

Query:    49 KPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGD 108
             K K+VWIWT  K+VMT AVERGWNTF+F S+N++L+ +WS+IAL+D LFI+E +V D   
Sbjct:    91 KAKKVWIWTMCKEVMTVAVERGWNTFIFSSDNRKLSNEWSSIALMDTLFIEEKKVIDGTG 150

Query:   109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKT 168
               V S+ EVSTP+EL+ L   + Q ENIV+D  DW+ IPAEN+VA+ QGS KTVFA+S T
Sbjct:   151 NVVASVFEVSTPEELRSLNIENEQIENIVLDFLDWKSIPAENLVAALQGSEKTVFAVSNT 210

Query:   169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGM 228
             PSEA++FLEALE GLGGI+LK EDVKAVL LKEYFD RNE S+ LSL +AT+TRV + GM
Sbjct:   211 PSEAKLFLEALEHGLGGIILKSEDVKAVLDLKEYFDKRNEESDTLSLTEATITRVQMVGM 270

Query:   229 GDRVCVDLCSLMRPG 243
             GDRVCVDLCSLMRPG
Sbjct:   271 GDRVCVDLCSLMRPG 285


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      247       239   0.00092  113 3  11 22  0.41    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  192 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.92u 0.18s 20.10t   Elapsed:  00:00:01
  Total cpu time:  19.92u 0.18s 20.10t   Elapsed:  00:00:01
  Start:  Sat May 11 05:22:23 2013   End:  Sat May 11 05:22:24 2013
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.999.1
hypothetical protein (345 aa)
(Populus trichocarpa)
Predicted Functional Partners:
EPSPS
3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)
•     • 0.770
gw1.XIV.2747.1
hypothetical protein (337 aa)
•     • 0.708
gw1.VIII.57.1
annotation not avaliable (321 aa)
•     • 0.563
gw1.XVI.3177.1
hypothetical protein (66 aa)
•       0.501
PDTp
arogenate/prephenate dehydratase (EC-4.2.1.91) (302 aa)
•  •    0.480
fgenesh4_pg.C_scaffold_70000157
hypothetical protein (223 aa)
•    •  0.465
CS2
RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)
•       0.460
CS1
chorismate synthase (EC-4.2.3.5) (438 aa)
•       0.455
gw1.2627.7.1
Predicted protein (172 aa)
•       0.452

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
pfam01959 347 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4 2e-48
PRK02290 344 PRK02290, PRK02290, 3-dehydroquinate synthase; Pro 1e-28
COG1465 376 COG1465, COG1465, Predicted alternative 3-dehydroq 3e-22
>gnl|CDD|216810 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4 Back     alignment and domain information 
 Score =  162 bits (413), Expect = 2e-48
 Identities = 64/200 (32%), Positives = 110/200 (55%), Gaps = 9/200 (4%)

Query: 51  KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWS--TIALLDPLFIKEGEV 103
           K+VW+     W E K+ +T A+E G +  +   E+ +   +    T+A      + + E 
Sbjct: 1   KKVWLKADGPWDERKERITTALESGVDAVLVDEEDVERVRELGRITVAADGTDDLPDLET 60

Query: 104 YDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVF 163
                + VG+ +E+   ++ +    A  +A+ ++++  DW +IP EN++A  QGS   V 
Sbjct: 61  LKESGKDVGAYVEILDKEDEEFAAEAAKEADYVIVEGRDWTIIPLENLIARLQGSETKVI 120

Query: 164 AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223
           A+ ++  EA++ LE LE+G+ G++L  +D   + A+    + ++  S  L L+ ATVT V
Sbjct: 121 AVVRSAEEAKLALETLEKGVDGVLLDSDDPNEIKAIVAVVEEKSSES--LDLVPATVTEV 178

Query: 224 DVAGMGDRVCVDLCSLMRPG 243
           +  GMGDRVCVD CSLM  G
Sbjct: 179 EPVGMGDRVCVDTCSLMEDG 198

6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyzes the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides. Length = 347
>gnl|CDD|235025 PRK02290, PRK02290, 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>gnl|CDD|224382 COG1465, COG1465, Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PF01959 354 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); Inte 100.0
PRK02290 344 3-dehydroquinate synthase; Provisional 100.0
COG1465 376 Predicted alternative 3-dehydroquinate synthase [A 100.0
PRK10128 267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 94.36
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 94.21
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 94.01
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 94.0
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 93.82
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 93.03
PRK05826465 pyruvate kinase; Provisional 91.75
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 91.53
PF03328221 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family 91.42
PTZ00300 454 pyruvate kinase; Provisional 91.21
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 90.84
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 90.78
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 90.32
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 90.15
PRK05848273 nicotinate-nucleotide pyrophosphorylase; Provision 89.62
PF02662124 FlpD: Methyl-viologen-reducing hydrogenase, delta 89.58
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 88.86
PF00224348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 88.63
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 88.54
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 88.38
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 88.18
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 87.98
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 87.03
PRK06106281 nicotinate-nucleotide pyrophosphorylase; Provision 86.48
PLN02591250 tryptophan synthase 85.63
PRK06559290 nicotinate-nucleotide pyrophosphorylase; Provision 85.59
PTZ00066513 pyruvate kinase; Provisional 85.38
PF03060 330 NMO: Nitronate monooxygenase; InterPro: IPR004136 85.18
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 84.83
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 84.68
PRK08385278 nicotinate-nucleotide pyrophosphorylase; Provision 84.45
PRK06096284 molybdenum transport protein ModD; Provisional 84.29
TIGR01370315 cysRS possible cysteinyl-tRNA synthetase, Methanoc 83.89
PRK06543281 nicotinate-nucleotide pyrophosphorylase; Provision 83.87
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 83.47
TIGR03151 307 enACPred_II putative enoyl-(acyl-carrier-protein) 83.28
TIGR00007230 phosphoribosylformimino-5-aminoimidazole carboxami 83.21
PRK07428288 nicotinate-nucleotide pyrophosphorylase; Provision 83.01
PF00072112 Response_reg: Response regulator receiver domain; 82.95
PRK07896289 nicotinate-nucleotide pyrophosphorylase; Provision 82.91
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 82.66
PF1365330 GDPD_2: Glycerophosphoryl diester phosphodiesteras 82.35
TIGR01334277 modD putative molybdenum utilization protein ModD. 82.1
PRK06978294 nicotinate-nucleotide pyrophosphorylase; Provision 81.95
PLN02762 509 pyruvate kinase complex alpha subunit 81.34
TIGR01064473 pyruv_kin pyruvate kinase. This enzyme is a homote 80.97
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 80.77
PF1124798 DUF2675: Protein of unknown function (DUF2675) ; I 80.75
COG0352211 ThiE Thiamine monophosphate synthase [Coenzyme met 80.51
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 80.35
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4 Back     alignment and domain information 
Probab=100.00  E-value=3.8e-61  Score=449.68  Aligned_cols=194  Identities=34%  Similarity=0.598  Sum_probs=181.6

Q ss_pred             cEEEE-----EeCchhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeee---cCCce------ecCCCCeEEEEEE
Q 025857           51 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGEV------YDSGDRRVGSIIE  116 (247)
Q Consensus        51 K~vWi-----W~~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i---~~g~~------~~~~g~~va~~~~  116 (247)
                      |++||     |+++|++||+|||||||+|++++++++++++||++.++.|..-   +|+..      ++.+|+.+|.|++
T Consensus         1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~   80 (354)
T PF01959_consen    1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE   80 (354)
T ss_pred             CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence            78999     8899999999999999999999889999999999999996332   22332      3578999999999


Q ss_pred             ecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 025857          117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV  196 (247)
Q Consensus       117 I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev  196 (247)
                      |.|+++++.++...+..+|+|++++||||||||||||+||+++++||+.|+|++||+++|++||+|+|||+|+|+|+++|
T Consensus        81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei  160 (354)
T PF01959_consen   81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI  160 (354)
T ss_pred             ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccccceeeeEEEEEEEEEecCCcceeeeeccCCCCCCccC
Q 025857          197 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWIL  246 (247)
Q Consensus       197 ~~l~~~~~~~~~~~~~l~L~~AtVT~V~~vGmGDRVCVDTcSlm~~GEGM  246 (247)
                      ++++++++.  .++++++|++|+||+|+|+||||||||||||||+|||||
T Consensus       161 ~~~~~~~~~--~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGm  208 (354)
T PF01959_consen  161 KALVALLKE--RSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGM  208 (354)
T ss_pred             HHHHHHHhh--ccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeE
Confidence            999999876  367889999999999999999999999999999999998

6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
>PRK02290 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) [] Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06096 molybdenum transport protein ModD; Provisional Back     alignment and domain information
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type Back     alignment and domain information
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Back     alignment and domain information
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A Back     alignment and domain information
>TIGR01334 modD putative molybdenum utilization protein ModD Back     alignment and domain information
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information
>TIGR01064 pyruv_kin pyruvate kinase Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5 Back     alignment and domain information
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 72/196 (36%)

Query: 54  WIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS 113
           ++ +    + T   +    T +++ +  +L   ++   +     +           R+  
Sbjct: 93  FLMS---PIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVS----------RLQP 136

Query: 114 IIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS------- 166
            +++   Q L +L+PA    +N++ID                 GSGKT  A+        
Sbjct: 137 YLKLR--QALLELRPA----KNVLID--------------GVLGSGKTWVALDVCLSYKV 176

Query: 167 KTPSEAQIF-------------LEALEQ--------------GLGGIVLKVEDVKAVLAL 199
           +   + +IF             LE L++                  I L++  ++A   L
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--EL 234

Query: 200 KEYFDGRNEVSNLLSL 215
           +     +   + LL L
Sbjct: 235 RRLLKSKPYENCLLVL 250

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
3qz6_A 261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 94.65
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 93.97
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 92.44
2v5j_A 287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 91.94
2vws_A 267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 91.52
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 91.46
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 90.85
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 90.46
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 90.25
1izc_A 339 Macrophomate synthase intermolecular diels-aldera; 89.5
3paj_A320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 88.56
3bo9_A 326 Putative nitroalkan dioxygenase; TM0800, structura 88.1
3tsm_A272 IGPS, indole-3-glycerol phosphate synthase; struct 87.81
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 87.43
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 86.36
1sgj_A 284 Citrate lyase, beta subunit; trimer, TIM barrel, s 86.11
1wbh_A214 KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} 86.01
3tqv_A287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 85.86
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 85.75
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 85.54
1a3w_A 500 Pyruvate kinase; allosteric regulation, tranferase 85.41
3l0g_A300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 85.25
1o4u_A285 Type II quinolic acid phosphoribosyltransferase; s 84.41
1ujp_A271 Tryptophan synthase alpha chain; riken structural 84.13
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 83.97
3luf_A259 Two-component system response regulator/ggdef doma 83.96
1xi3_A215 Thiamine phosphate pyrophosphorylase; structural g 83.93
3c2e_A294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 83.71
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 83.6
2gjl_A 328 Hypothetical protein PA1024; 2-nitropropane dioxyg 83.38
1qap_A296 Quinolinic acid phosphoribosyltransferase; glycosy 83.28
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 83.12
4avf_A490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 82.63
1wa3_A205 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, 82.62
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 82.55
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 82.45
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 82.25
2b7n_A273 Probable nicotinate-nucleotide pyrophosphorylase; 82.19
4fxs_A496 Inosine-5'-monophosphate dehydrogenase; structural 81.85
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 81.73
1yxy_A234 Putative N-acetylmannosamine-6-phosphate 2-epimer; 81.72
3gnn_A298 Nicotinate-nucleotide pyrophosphorylase; decode bi 81.65
3ffs_A400 Inosine-5-monophosphate dehydrogenase; beta-alpha 81.62
2f6u_A234 GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy 81.31
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 80.67
2qvg_A143 Two component response regulator; NYSGXRC, PSI-2, 80.4
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
Probab=94.65  E-value=0.069  Score=47.11  Aligned_cols=92  Identities=13%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             CeEEEEEEe-cChhhHhhhccccCCCCeEEEecCCCeeechhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccC
Q 025857          109 RRVGSIIEV-STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLG  184 (247)
Q Consensus       109 ~~va~~~~I-~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q---~~~~~lia~v~~~~EA~val~~LE~G~D  184 (247)
                      ..+|.++.. .+++-.+.+...  ..|+++++..| .+.|.+.+.+.++   ..+..++..++..+. .-...+|+.|+|
T Consensus        15 ~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEh-av~~~~k~~~~l~a~~~~~~~~~VRVn~~~~-~di~~~ld~G~~   90 (261)
T 3qz6_A           15 SVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEH-AAYTFREINHLVSVAKNAGVSVLVRIPQVDR-AHVQRLLDIGAE   90 (261)
T ss_dssp             CEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSS-SCCCHHHHHHHHHHHHHHTCEEEEECSSCCH-HHHHHHHHHTCC
T ss_pred             CEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccC-CCCCHHHHHHHHHHHhhcCCeEEEEeCCCCH-HHHHHHHhcCCC
Confidence            567888888 888887777643  58999999887 5677666555443   245678888876544 345677889999


Q ss_pred             eEEEe-cCCHHHHHHHHHhhc
Q 025857          185 GIVLK-VEDVKAVLALKEYFD  204 (247)
Q Consensus       185 GVll~-~~d~~ev~~l~~~~~  204 (247)
                      ||+++ .+++++++++.+.+.
T Consensus        91 gI~lP~v~saed~~~~~~~~~  111 (261)
T 3qz6_A           91 GFMIPGVQSAETMRETVRLAK  111 (261)
T ss_dssp             EEEETTCCSHHHHHHHHHHHS
T ss_pred             EEEECCcCCHHHHHHHHHHhc
Confidence            99997 678999999888763
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5 Back     alignment and structure
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Back     alignment and structure
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Back     alignment and structure
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Back     alignment and structure
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Back     alignment and structure
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 94.92
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 93.49
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 92.03
d1izca_ 299 Macrophomate synthase {Macrophoma commelinae [TaxI 91.79
d1o4ua1170 Quinolinic acid phosphoribosyltransferase (Nicotin 89.95
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 89.63
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 88.08
d1o1za_226 Hypothetical protein TM1621 {Thermotoga maritima [ 86.19
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 85.57
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 85.15
d1qopa_267 Trp synthase alpha-subunit {Salmonella typhimurium 82.64
d1ujpa_271 Trp synthase alpha-subunit {Thermus thermophilus [ 81.96
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.059  Score=45.47  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=72.8

Q ss_pred             CeEEEEEEecChhhHhhhccccCCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 025857          109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI  186 (247)
Q Consensus       109 ~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGV  186 (247)
                      ..+|.+..+.++.-.+.++..  ..|+++++..  .+..==+++++.+++..+...+..+.+. +...+..+|+.|++||
T Consensus        16 ~~~G~~~~~~~p~~~ei~a~~--G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~~-~~~~i~~~LD~Ga~GI   92 (253)
T d1dxea_          16 VQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTN-EPVIIKRLLDIGFYNF   92 (253)
T ss_dssp             CEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSS-CHHHHHHHHHTTCCEE
T ss_pred             CEEEEEecCCCHHHHHHHHcC--CCCEEEEecccCCCChhHHHHHHHHHhccCCCceecCCCC-CHHHHHHHHhcCccEE
Confidence            457888888888887777643  4899999976  2444456999999999998888888764 4466778999999999


Q ss_pred             EEe-cCCHHHHHHHHHhh
Q 025857          187 VLK-VEDVKAVLALKEYF  203 (247)
Q Consensus       187 ll~-~~d~~ev~~l~~~~  203 (247)
                      +++ .+++++++++.+..
T Consensus        93 ivP~v~s~eea~~~v~~~  110 (253)
T d1dxea_          93 LIPFVETKEEAELAVAST  110 (253)
T ss_dssp             EESCCCSHHHHHHHHHTT
T ss_pred             EecccCCHHHHHHHHHhh
Confidence            996 57799898888765
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure