Citrus Sinensis ID: 025864

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MAKIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEARF
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHccccccccccccccc
cccEEEccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEcccccccccEEEEEEEEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccc
makialgshreatqpDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISaghisgghlnpaVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYltgglstpvhtlasgvgyFQGIIWEIILTFSLLFTVYATivdpkkgsidglgplltGFVVGanilaggpfsgasmnparsfgpalvsgdwtdhwVYWVgpliggglagfIYEHFFivrshvpipyeearf
makialgshreatqpdCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEARF
MAKIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNalvglffvavahafvvavMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQllassaacfllsylTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEARF
***************DCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIP******
*AKIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFI**************
************TQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEARF
*AKIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSH**********
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
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MAKIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEARF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
O82316249 Aquaporin TIP4-1 OS=Arabi yes no 0.987 0.979 0.860 1e-109
Q9ATL3252 Aquaporin TIP4-4 OS=Zea m N/A no 0.995 0.976 0.616 3e-76
Q75GA5251 Probable aquaporin TIP4-1 yes no 0.939 0.924 0.602 4e-73
Q9LWR2251 Probable aquaporin TIP4-3 no no 0.995 0.980 0.638 7e-72
Q41951250 Aquaporin TIP2-1 OS=Arabi no no 0.987 0.976 0.558 1e-71
P25818251 Aquaporin TIP1-1 OS=Arabi no no 0.979 0.964 0.556 2e-71
Q9ATL4249 Aquaporin TIP4-3 OS=Zea m N/A no 0.983 0.975 0.574 2e-70
Q84RL6248 Aquaporin TIP2-3 OS=Zea m N/A no 0.979 0.975 0.560 9e-70
P21653250 Probable aquaporin TIP-ty N/A no 0.979 0.968 0.562 5e-68
P24422250 Probable aquaporin TIP-ty N/A no 0.979 0.968 0.566 7e-68
>sp|O82316|TIP41_ARATH Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/244 (86%), Positives = 220/244 (90%)

Query: 1   MAKIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAH 60
           M KI LG H EA +PDCIKAL+VEFITTFLFVF GVGSAMA D LVGN LVGLF VAVAH
Sbjct: 1   MKKIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLVGNTLVGLFAVAVAH 60

Query: 61  AFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTG 120
           AFVVAVMISAGHISGGHLNPAVTLGLL GGHI+ FR+ LYWIDQLLASSAACFLLSYLTG
Sbjct: 61  AFVVAVMISAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTG 120

Query: 121 GLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGAN 180
           G+ TPVHTLASGV Y QGIIWEIILTFSLLFTVYATIVDPKKGS+DG GPLLTGFVVGAN
Sbjct: 121 GMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGAN 180

Query: 181 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPI 240
           ILAGG FSGASMNPARSFGPALVSG+WTDHWVYWVGPLIGGGLAGFIYE+  I R HVP+
Sbjct: 181 ILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVLIDRPHVPV 240

Query: 241 PYEE 244
             +E
Sbjct: 241 ADDE 244
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. Transports urea in yeast cells in a pH-independent manner.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ATL3|TIP44_MAIZE Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1 Back     alignment and function description
>sp|Q75GA5|TIP41_ORYSJ Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LWR2|TIP43_ORYSJ Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1 Back     alignment and function description
>sp|Q41951|TIP21_ARATH Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2 Back     alignment and function description
>sp|P25818|TIP11_ARATH Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATL4|TIP43_MAIZE Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1 Back     alignment and function description
>sp|Q84RL6|TIP23_MAIZE Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2 Back     alignment and function description
>sp|P21653|TIP1_TOBAC Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P24422|TIP2_TOBAC Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
255550982247 tonoplast intrinsic protein, putative [R 1.0 1.0 0.870 1e-120
388491460249 unknown [Medicago truncatula] 0.987 0.979 0.827 1e-113
388503412247 unknown [Medicago truncatula] 1.0 1.0 0.817 1e-113
224092296247 aquaporin, MIP family, TIP subfamily [Po 1.0 1.0 0.866 1e-111
300793618246 TPA_inf: aquaporin TIP4;1 [Gossypium hir 0.991 0.995 0.857 1e-109
4584429247 aquaglyceroporin [Nicotiana tabacum] 0.991 0.991 0.813 1e-108
15225195249 aquaporin TIP4-1 [Arabidopsis thaliana] 0.987 0.979 0.860 1e-107
297822013249 TIP4_1 [Arabidopsis lyrata subsp. lyrata 0.987 0.979 0.848 1e-106
257480319248 putative tonoplast intrinsic protein [Ca 1.0 0.995 0.826 1e-104
356507915246 PREDICTED: aquaporin TIP4-1-like [Glycin 0.995 1.0 0.804 1e-104
>gi|255550982|ref|XP_002516539.1| tonoplast intrinsic protein, putative [Ricinus communis] gi|223544359|gb|EEF45880.1| tonoplast intrinsic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/247 (87%), Positives = 232/247 (93%)

Query: 1   MAKIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAH 60
           MAKIALG+ REATQ DCIKAL+VEFITTFLFVF GVGSAMAA+KL+G++LVGLFFVA+AH
Sbjct: 1   MAKIALGTRREATQSDCIKALIVEFITTFLFVFAGVGSAMAANKLLGDSLVGLFFVAMAH 60

Query: 61  AFVVAVMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTG 120
             VVAVMISAGHISGGHLNPAVTLGLL GGHIT  RSILYWIDQLLASSAACFLL+YLTG
Sbjct: 61  TLVVAVMISAGHISGGHLNPAVTLGLLAGGHITVVRSILYWIDQLLASSAACFLLNYLTG 120

Query: 121 GLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGAN 180
           G++TPVHTLASGVGY QGI+WEI+LTFSLLFTVYATIVDPKKGSIDGLGP LTGFVVGAN
Sbjct: 121 GMATPVHTLASGVGYVQGIVWEIVLTFSLLFTVYATIVDPKKGSIDGLGPTLTGFVVGAN 180

Query: 181 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPI 240
           ILAGGPFSGASMNPARSFGPALVS DWTDHWVYWVGPLIGGGLAGFIYE+FFI+RSH P+
Sbjct: 181 ILAGGPFSGASMNPARSFGPALVSWDWTDHWVYWVGPLIGGGLAGFIYENFFIIRSHRPL 240

Query: 241 PYEEARF 247
           P +E  +
Sbjct: 241 PNDEENY 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388491460|gb|AFK33796.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388503412|gb|AFK39772.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224092296|ref|XP_002309548.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] gi|222855524|gb|EEE93071.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|300793618|tpg|DAA33872.1| TPA_inf: aquaporin TIP4;1 [Gossypium hirsutum] gi|300793626|tpg|DAA33873.1| TPA_inf: aquaporin TIP4;2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|4584429|emb|CAB40742.1| aquaglyceroporin [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|15225195|ref|NP_180152.1| aquaporin TIP4-1 [Arabidopsis thaliana] gi|32363218|sp|O82316.1|TIP41_ARATH RecName: Full=Aquaporin TIP4-1; AltName: Full=Epsilon-tonoplast intrinsic protein; Short=Epsilon-TIP; AltName: Full=Tonoplast intrinsic protein 4-1; Short=AtTIP4;1 gi|3643602|gb|AAC42249.1| putative aquaporin (tonoplast intrinsic protein) [Arabidopsis thaliana] gi|46931300|gb|AAT06454.1| At2g25810 [Arabidopsis thaliana] gi|110740499|dbj|BAE98355.1| putative aquaporin [Arabidopsis thaliana] gi|330252661|gb|AEC07755.1| aquaporin TIP4-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297822013|ref|XP_002878889.1| TIP4_1 [Arabidopsis lyrata subsp. lyrata] gi|297324728|gb|EFH55148.1| TIP4_1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|257480319|gb|ACV60358.1| putative tonoplast intrinsic protein [Camellia sinensis] Back     alignment and taxonomy information
>gi|356507915|ref|XP_003522708.1| PREDICTED: aquaporin TIP4-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2043505249 TIP4;1 "tonoplast intrinsic pr 0.987 0.979 0.737 3e-94
TAIR|locus:2057906251 GAMMA-TIP "gamma tonoplast int 0.963 0.948 0.504 3.8e-62
TAIR|locus:2094977250 DELTA-TIP "delta tonoplast int 0.971 0.96 0.493 6.4e-60
TAIR|locus:2088867253 TIP2 "tonoplast intrinsic prot 0.963 0.940 0.483 1.5e-58
TAIR|locus:2130883250 TIP2;2 "tonoplast intrinsic pr 0.987 0.976 0.489 1.9e-58
TAIR|locus:2168953250 TIP2;3 "tonoplast intrinsic pr 0.991 0.98 0.48 7.5e-57
TAIR|locus:2116987252 TIP1;3 "tonoplast intrinsic pr 0.967 0.948 0.467 2e-56
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.939 0.865 0.477 7e-54
TAIR|locus:2030968267 BETA-TIP "beta-tonoplast intri 0.963 0.891 0.465 1.9e-53
TAIR|locus:2099595256 TIP5;1 "tonoplast intrinsic pr 0.878 0.847 0.355 2.8e-34
TAIR|locus:2043505 TIP4;1 "tonoplast intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 180/244 (73%), Positives = 190/244 (77%)

Query:     1 MAKIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXX 60
             M KI LG H EA +PDCIKAL+VEFITTFLFVF GVGSAMA D LVGN            
Sbjct:     1 MKKIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLVGNTLVGLFAVAVAH 60

Query:    61 XXXXXXMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTG 120
                   MISAGHISGGHLNPAVTLGLL GGHI+ FR+ LYWIDQ              TG
Sbjct:    61 AFVVAVMISAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTG 120

Query:   121 GLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGAN 180
             G+ TPVHTLASGV Y QGIIWEIILTFSLLFTVYATIVDPKKGS+DG GPLLTGFVVGAN
Sbjct:   121 GMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGAN 180

Query:   181 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPI 240
             ILAGG FSGASMNPARSFGPALVSG+WTDHWVYWVGPLIGGGLAGFIYE+  I R HVP+
Sbjct:   181 ILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVLIDRPHVPV 240

Query:   241 PYEE 244
               +E
Sbjct:   241 ADDE 244
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0042807 "central vacuole" evidence=IDA
GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA
TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094977 DELTA-TIP "delta tonoplast integral protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116987 TIP1;3 "tonoplast intrinsic protein 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099595 TIP5;1 "tonoplast intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P33560TIP_ANTMANo assigned EC number0.55420.97970.968N/Ano
P42067TIP1_MEDSANo assigned EC number0.52030.97160.9638N/Ano
Q6PQZ1AQP1_PIGNo assigned EC number0.40520.87850.8007yesno
Q84RL6TIP23_MAIZENo assigned EC number0.56040.97970.9758N/Ano
Q9N2J4AQP1_CANFANo assigned EC number0.40520.87850.8007yesno
Q5R819AQP1_PONABNo assigned EC number0.40880.87850.8066yesno
Q9ATL3TIP44_MAIZENo assigned EC number0.61660.99590.9761N/Ano
P24422TIP2_TOBACNo assigned EC number0.56620.97970.968N/Ano
Q9ATL6TIP41_MAIZENo assigned EC number0.57740.93920.9098N/Ano
Q9ATL5TIP42_MAIZENo assigned EC number0.56840.93920.9027N/Ano
Q9ATL4TIP43_MAIZENo assigned EC number0.57420.98380.9759N/Ano
Q9FY14TIP1_MEDTRNo assigned EC number0.52840.97570.964N/Ano
Q9ATL9TIP21_MAIZENo assigned EC number0.52820.98380.9759N/Ano
Q9ATL8TIP22_MAIZENo assigned EC number0.53220.98780.976N/Ano
Q75GA5TIP41_ORYSJNo assigned EC number0.60250.93920.9243yesno
P29972AQP1_HUMANNo assigned EC number0.41330.87850.8066yesno
P21653TIP1_TOBACNo assigned EC number0.56220.97970.968N/Ano
O82316TIP41_ARATHNo assigned EC number0.86060.98780.9799yesno
Q7PWV1AQP_ANOGANo assigned EC number0.38830.85420.844yesno
O64964TIP11_MAIZENo assigned EC number0.56500.97570.964N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-95
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-80
pfam00230218 pfam00230, MIP, Major intrinsic protein 3e-68
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-61
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-58
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 1e-51
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 6e-36
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-28
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 4e-27
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 5e-27
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-26
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-25
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 1e-14
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 0.002
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information 
 Score =  280 bits (717), Expect = 1e-95
 Identities = 138/244 (56%), Positives = 173/244 (70%), Gaps = 5/244 (2%)

Query: 3   KIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALV---GLFFVAVA 59
           +IA+G+  EA+ PD +KA + EFI+T +FVF G GS MA +KL  N      GL   A+A
Sbjct: 5   RIAIGTPGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALA 64

Query: 60  HAFVVAVMISAG-HISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYL 118
           HAF + V +S G +ISGGH+NPAVT G   GG+IT  R ILYWI QLL S  AC LL + 
Sbjct: 65  HAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFS 124

Query: 119 TGGLSTPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVG 178
           TGGL T   +L+SGVG +   ++EI++TF L++TVYAT VDPKKG +  + P+  GF+VG
Sbjct: 125 TGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVG 184

Query: 179 ANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIV-RSH 237
           ANILAGG F GASMNPA SFGPA+VS  WT+HWVYW GPLIGGG+AG +YE  FI   +H
Sbjct: 185 ANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTTH 244

Query: 238 VPIP 241
             +P
Sbjct: 245 EQLP 248

Length = 252
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.67
PLN00184 296 aquaporin NIP1; Provisional 99.67
PLN00167 256 aquaporin TIP5; Provisional 99.59
PLN00183274 putative aquaporin NIP7; Provisional 99.58
PLN00166 250 aquaporin TIP2; Provisional 99.57
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.56
PLN00182 283 putative aquaporin NIP4; Provisional 99.56
PLN00027 252 aquaporin TIP; Provisional 99.54
PRK05420 231 aquaporin Z; Provisional 99.53
PTZ00016 294 aquaglyceroporin; Provisional 99.52
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.46
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.45
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.42
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.4
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.18
PRK11562268 nitrite transporter NirC; Provisional 90.51
PRK09713282 focB putative formate transporter; Provisional 82.46
COG2116265 FocA Formate/nitrite family of transporters [Inorg 82.03
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-53  Score=355.18  Aligned_cols=229  Identities=49%  Similarity=0.845  Sum_probs=208.0

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchHHHHHHHHHHHHHHHHHHh-hcCCCCCchHHHHHHH
Q 025864            9 HREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLL   87 (247)
Q Consensus         9 ~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~-~iSG~h~NPavTla~~   87 (247)
                      .++..+.+.+|++++||++|++++|++|++......  .+.+.+.+.+++++|+.+++.++.. ++||||+|||||++++
T Consensus         2 ~~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~--~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~   79 (238)
T KOG0223|consen    2 SGELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK--YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFA   79 (238)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHH
Confidence            356678899999999999999999999998866543  3456778899999999999999999 9999999999999999


Q ss_pred             HhcCcchhHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCeeecCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 025864           88 FGGHITFFRSILYWIDQLLASSAACFLLSYLTGGL----STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKG  163 (247)
Q Consensus        88 l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~v~~~~~~~~~~  163 (247)
                      +.|++++.++..|+++|++|+++|+.+++.+.+++    ......++++.+..|+++.|++.||.|+++++.+.+|+|+.
T Consensus        80 ~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~  159 (238)
T KOG0223|consen   80 VGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS  159 (238)
T ss_pred             HhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence            99999999999999999999999999999998874    23345677889999999999999999999999988999875


Q ss_pred             CCCChhHHHHHHHHHHHHHhcCCCCCCCcchhhhHHHHHcccCCCcceeccchhhHHHHHHHHHHHHhhhcCcCCCCCC
Q 025864          164 SIDGLGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPY  242 (247)
Q Consensus       164 ~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~~~~  242 (247)
                         .+.|+.||+++...+++++++||++|||||+|||++..+.|+++|+||++|++|+++++++|+.++.|+.+++.++
T Consensus       160 ---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~~~~~  235 (238)
T KOG0223|consen  160 ---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDESEPTKS  235 (238)
T ss_pred             ---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCccccccCc
Confidence               7899999999999999999999999999999999999999999999999999999999999999998884444433

>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 4e-33
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 2e-32
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 5e-30
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 5e-30
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 6e-30
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 1e-28
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-26
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-26
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-26
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 3e-26
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 2e-23
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-21
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-21
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-21
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-21
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-21
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 1e-13
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 1e-12
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-12
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 5e-09
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-07
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 2e-07
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 3e-07
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 3e-07
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 4e-07
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 5e-07
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 6e-07
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-06
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 5e-06
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 116/225 (51%), Gaps = 8/225 (3%)
Query: 19  KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMI----SAGHIS 74
           +A+V EF+ T LFVF+ +GSA+     VGN                  +     S GHIS
Sbjct: 12  RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHIS 71
Query: 75  GGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGL---STPVHTLAS 131
           G HLNPAVTLGLL    I+ FR+++Y I Q              T  L   S   + LA 
Sbjct: 72  GAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLAD 131
Query: 132 GVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGAS 191
           GV   QG+  EII T  L+  V AT  D ++  + G  PL  G  V    L    ++G  
Sbjct: 132 GVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCG 190
Query: 192 MNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRS 236
           +NPARSFG A+++ ++++HW++WVGP IGG LA  IY+     RS
Sbjct: 191 INPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRS 235
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-92
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 2e-89
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 9e-88
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-87
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-85
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-85
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-85
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 3e-84
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-78
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-76
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-63
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 7e-43
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 6e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  274 bits (702), Expect = 2e-92
 Identities = 82/247 (33%), Positives = 131/247 (53%), Gaps = 5/247 (2%)

Query: 3   KIALGSHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAF 62
           +  + + +        KA+  EF+   +FV + VGS +          V +  +++    
Sbjct: 37  RSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGL 96

Query: 63  VVAVMISA-GHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGG 121
            +A M+   GHISGGH+NPAVT+ ++    I+  +S+ Y   Q L +     +L  +T  
Sbjct: 97  SIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPP 156

Query: 122 LSTP---VHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVG 178
                  V T+   +    G++ E+I+TF L+FT++A+  D K+  + G   L  GF V 
Sbjct: 157 SVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFAS-CDDKRTDVTGSVALAIGFSVA 215

Query: 179 ANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHV 238
              L    ++GASMNPARSFGPA++ G+W +HW+YWVGP+IG  LAG +YE+ F     +
Sbjct: 216 IGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVEL 275

Query: 239 PIPYEEA 245
               +EA
Sbjct: 276 KRRLKEA 282
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.6
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.59
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.5
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.49
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.49
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.47
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.46
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.45
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.45
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.45
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.44
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.42
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.42
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 86.3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.5e-53  Score=355.72  Aligned_cols=219  Identities=35%  Similarity=0.638  Sum_probs=192.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchHHHHHHHHHHHHHHHHHHh-hcCCCCCchHHHHHHHHhcCcc
Q 025864           15 PDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLFGGHIT   93 (247)
Q Consensus        15 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~-~iSG~h~NPavTla~~l~g~~~   93 (247)
                      ++++|++++||+||++|+++++++..+..+..+....+++.+++++|+++.+.++++ ++||+|+|||||++.++.|+++
T Consensus         1 ~~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~   80 (223)
T 3gd8_A            1 QAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS   80 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCC
Confidence            468999999999999999999998875422222345678899999999999999999 9999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCeeecCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhH
Q 025864           94 FFRSILYWIDQLLASSAACFLLSYLTGGL---STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGP  170 (247)
Q Consensus        94 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~~  170 (247)
                      |++.+.|+++|++|+++|+.+++.++++.   ....+.+.++.+..++++.|+++|++|+++++.+ .|+|+.......|
T Consensus        81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~-~~~~~~~~~~~~p  159 (223)
T 3gd8_A           81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFAS-CDSKRTDVTGSIA  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-TCTTCSCCCSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHH-hccccCCccCCcc
Confidence            99999999999999999999999887642   2234456677899999999999999999999995 6666544456789


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCcchhhhHHHHHcccCCCcceeccchhhHHHHHHHHHHHHhhhc
Q 025864          171 LLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIV  234 (247)
Q Consensus       171 ~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~  234 (247)
                      +.||+.+...+..+++.||+++||||||||++..++|+++|+||++|++|+++++++|++++.|
T Consensus       160 l~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          160 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence            9999999888888888899999999999999999999999999999999999999999998764
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 4e-41
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 8e-37
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-32
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 6e-31
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  139 bits (350), Expect = 4e-41
 Identities = 90/237 (37%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 9   HREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGN-----ALVGLFFVAVAHAFV 63
             E  +    +A+V EF+   LF+F+ +GSA+     + +     A+     V++A    
Sbjct: 2   ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLS 61

Query: 64  VAVMI-SAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQLLASSAACFLLSYLTGGL 122
           +A +  S GHISG HLNPAVTLGLL    I+  R+I+Y I Q + +  A  +LS +T  L
Sbjct: 62  IATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSL 121

Query: 123 ---STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGA 179
              S  ++ LA GV   QG+  EII T  L+  V AT  D ++  + G GPL  GF V  
Sbjct: 122 PDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGFSVAL 180

Query: 180 NILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRS 236
             L    ++G  +NPARSFG ++++ ++ DHW++WVGP IG  LA  IY+     RS
Sbjct: 181 GHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.56
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.45
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.38
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.31
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.7e-51  Score=343.13  Aligned_cols=222  Identities=35%  Similarity=0.645  Sum_probs=196.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcchHHHHHHHHHHHHHHHHHHh-hcCCCCCchHHHHHHHHhcCc
Q 025864           14 QPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNALVGLFFVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLFGGHI   92 (247)
Q Consensus        14 ~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~-~iSG~h~NPavTla~~l~g~~   92 (247)
                      +.++||++++||+||++++|+++++.....    +...+.+.+++++|+++...++.+ ++||||+|||||+++++.|++
T Consensus         1 s~s~~r~~laEf~GT~~lvf~g~gs~~~~~----~~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i   76 (234)
T d1ymga1           1 SASFWRAICAEFFASLFYVFFGLGASLRWA----PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQM   76 (234)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCC
Confidence            357899999999999999999999875432    234567788999999999999999 999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CeeecCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChh
Q 025864           93 TFFRSILYWIDQLLASSAACFLLSYLTGGLST---PVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLG  169 (247)
Q Consensus        93 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~E~~~T~~l~~~v~~~~~~~~~~~~~~~~  169 (247)
                      ++++.+.|+++|++|+++|+.+.+.++++...   ....+.++.+..++++.|++.|++++++++.+ .|+++.......
T Consensus        77 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~-~~~~~~~~~~~~  155 (234)
T d1ymga1          77 SLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSV  155 (234)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTSCSCCCCH
T ss_pred             ChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheee-ecCCccCcCcce
Confidence            99999999999999999999999999876432   23345677889999999999999999999985 566555455678


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCcchhhhHHHHHcccCCCcceeccchhhHHHHHHHHHHHHhhhcCcCCCC
Q 025864          170 PLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPI  240 (247)
Q Consensus       170 ~~~ig~~v~~~~~~~~~~sG~~lNPA~~l~~~~~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~~  240 (247)
                      ++.+|+.+.+.....++.||+++|||||+||++.+++|+++|+||++|++|+++|+++|++++.|+.++.+
T Consensus       156 ~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~~  226 (234)
T d1ymga1         156 ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVS  226 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCHH
T ss_pred             eEeehHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999988766544
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure