Citrus Sinensis ID: 025891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MAQSCAAALSSTAIFAAFCNHFPAESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLAF
Secondary Structure (PSIPRED)
cccHHHHHHcccHHHcccccccccccccccccccccHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHEcccccccccccccccccccccccccccccccccHHHHHccccHHccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHcHHHHHHcccEEEEEccEcHHHHHHHHHHHHHHHHHcccccEEEEEEEccEcHHHHHHHHHHHHHccccEEEEEEEEEEcHHHHHHHccccccEEEccccEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAQSCAAALSSTAIFAAFCnhfpaeshssslrfspLRLRKMIVssnrerkcekfgvkaaytsdysslddcesTWKGIWSIrndlevpsspyiptyaqgeqgggpppmlLGRFQNVLSQLFQHRiircggpvedDMANIIVAQLLYldavdpnkdIIMYlnspggsvtagMAIFDTirhirpdvSTVCVGLAASMGAFLLSagtkgkryslpnsrimihqplggaqggqsdiDLQVHIMAYFLTLAF
Flexible Loop (DISEMBL)
MAQSCAAALSSTAIFAAFCNHFPAEshssslrfsplRLRKMivssnrerkcekfgvkaaytsdysslddcESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLAF
Low Complexity Region (SEG)
MAQSCaaalsstaifaafCNHFPAEshssslrfsplrlrKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLAF
Disordered region (IsUnstruct)
*******ALSSTAIFAAFCNHFPA***********LRLRKMIVS****RKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYA**********MLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL**
Disordered Region (DISOPRED)
*********SSTAIFAAFC**************************************************************NDLEVPSSPYIPTYAQG*********LLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLAF
Disordered Region (DISEMBL)
********LSSTAIFAAFCNHFPAESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLAF
Disordered Region (DISPRO)
**********************************P*RLRK*I*SSNRERKCEKFGVKAAYTSDYSSLDDC*ST*KGI*SIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLAF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQSCAAALSSTAIFAAFCNHFPAESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q9S834	298	ATP-dependent Clp proteas	yes	no	0.955	0.788	0.636	1e-81
Q3MFR5	204	ATP-dependent Clp proteas	yes	no	0.516	0.622	0.685	6e-46
A6SY74	210	ATP-dependent Clp proteas	yes	no	0.532	0.623	0.648	6e-46
Q8YXH5	204	ATP-dependent Clp proteas	yes	no	0.516	0.622	0.669	3e-45
P54416	198	ATP-dependent Clp proteas	N/A	no	0.532	0.661	0.633	2e-44
Q2JIP1	200	ATP-dependent Clp proteas	yes	no	0.491	0.605	0.669	3e-44
Q8YQX8	232	ATP-dependent Clp proteas	no	no	0.520	0.551	0.664	4e-44
Q3M726	214	ATP-dependent Clp proteas	no	no	0.520	0.598	0.664	5e-44
B2UX13	199	ATP-dependent Clp proteas	yes	no	0.504	0.623	0.634	7e-44
Q5N665	197	ATP-dependent Clp proteas	yes	no	0.520	0.649	0.664	1e-43

>sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 187/245 (76%), Gaps = 10/245 (4%)

Query: 1   MAQSCAAALSSTAIF-AAFCNHFPA----ESHSSSLRFSPLRLRKMIVSSNRERKCEKFG 55
           MA +C +  +S+  F A F +  P     +S   SL F PLR RK     +  +  +   
Sbjct: 1   MAHACVSTSASSLRFTAGFVSASPNGSSFDSPKLSLPFEPLRSRKTNKLVSDRKNWKNST 60

Query: 56  VKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNV 115
            KA Y+ +  + +      +G+WSIR+DL+VPSSPY P YAQG+   GPPPM+  RFQ++
Sbjct: 61  PKAVYSGNLWTPEIPSP--QGVWSIRDDLQVPSSPYFPAYAQGQ---GPPPMVQERFQSI 115

Query: 116 LSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDT 175
           +SQLFQ+RIIRCGG V+DDMANIIVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMAIFDT
Sbjct: 116 ISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDT 175

Query: 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQV 235
           +RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ+DID+Q 
Sbjct: 176 MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA 235

Query: 236 HIMAY 240
           + M +
Sbjct: 236 NEMLH 240

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 9EC: 2

>sp|Q3MFR5|CLPP1_ANAVT ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1

 Score =  184 bits (467), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 106/127 (83%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RII  G  V+ ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IF
Sbjct: 18  DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT++HIRPDV T+C GLAASMGAFLLSAGTKGKR SLP+SRIMIHQPLGGAQG  +DI++
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137

Query: 234 QVHIMAY 240
           Q   + Y
Sbjct: 138 QAREILY 144

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A6SY74|CLPP_JANMA ATP-dependent Clp protease proteolytic subunit OS=Janthinobacterium sp. (strain Marseille) GN=clpP PE=3 SV=1

 Score =  184 bits (466), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 109/131 (83%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   GPV D MAN+IVAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 32  RAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKDISLYINSPGGSVSAGM 91

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+P+VST+C GLAASMGAFLL+AG KGKR+SLPNSRIMIHQPLGGAQG  SD
Sbjct: 92  AIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQGQASD 151

Query: 231 IDLQVHIMAYF 241
           I++Q   + Y 
Sbjct: 152 IEIQAREILYL 162

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Janthinobacterium sp. (strain Marseille) (taxid: 375286)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q8YXH5|CLPP1_NOSS1 ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=clpP1 PE=3 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 105/127 (82%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RI+  G  V+ ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IF
Sbjct: 18  DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT++HIRPDV T+C GLAASMGAFLLSAG KGKR SLP+SRIMIHQPLGGAQG  +DI++
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137

Query: 234 QVHIMAY 240
           Q   + Y
Sbjct: 138 QAREILY 144

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|P54416|CLPP1_SYNY3 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpP1 PE=3 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 104/131 (79%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RI+  G  V D+ AN++VAQLL+L+A DP KDI +Y+NSPGGSV+AG+ IF
Sbjct: 17  DIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPGGSVSAGLGIF 76

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT+  IRPDV T+C+GLAASMGAFLLSAG KGKR SLPNSRIMIHQPLGGAQG  +DI++
Sbjct: 77  DTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATDIEI 136

Query: 234 QVHIMAYFLTL 244
           Q   + Y   L
Sbjct: 137 QAKEILYLKAL 147

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 106/121 (87%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RII  G  V+DD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGMAI+
Sbjct: 17  DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIY 76

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT++HI+PDVST+C+GLAASMGAFLL+ GTKGKR +LP++RIMIHQPLGGAQG  +DI++
Sbjct: 77  DTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEI 136

Query: 234 Q 234
           Q
Sbjct: 137 Q 137

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q8YQX8|CLPP2_NOSS1 ATP-dependent Clp protease proteolytic subunit 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=clpP2 PE=3 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 103/128 (80%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RII  G P++D +AN IVAQLL+LDA D  KDI +Y+NSPGGSV AGMAI+
Sbjct: 45  DIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIY 104

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DTI+ IRPDV T+C GLAASMGAFLL+AGTKGKR SLP+SRIMIHQPLGGAQG   DI++
Sbjct: 105 DTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEI 164

Query: 234 QVHIMAYF 241
           Q   + Y 
Sbjct: 165 QAREILYI 172

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q3M726|CLPP3_ANAVT ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3 SV=2

 Score =  177 bits (450), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 103/128 (80%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RII  G P++D +AN IVAQLL+LDA D  KDI +Y+NSPGGSV AGMAI+
Sbjct: 27  DIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIY 86

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DTI+ IRPDV T+C GLAASMGAFLL+AGTKGKR SLP+SRIMIHQPLGGAQG   DI++
Sbjct: 87  DTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEI 146

Query: 234 QVHIMAYF 241
           Q   + Y 
Sbjct: 147 QAREILYI 154

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B2UX13|CLPP_CLOBA ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=clpP PE=3 SV=1

 Score =  177 bits (448), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/126 (63%), Positives = 106/126 (84%), Gaps = 2/126 (1%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   G V DD +N+IV+QLL+L++ DP+KDI +Y+NSPGGS+TAGM
Sbjct: 16  RSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGM 75

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT+++I+PDVST+CVG+AASMGAFLLS+G KGKRY+LPN+ IMIHQPLGG QG  +D
Sbjct: 76  AIYDTMQYIKPDVSTICVGMAASMGAFLLSSGAKGKRYALPNAEIMIHQPLGGFQGQATD 135

Query: 231 IDLQVH 236
           I  Q+H
Sbjct: 136 I--QIH 139

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Clostridium botulinum (strain Alaska E43 / Type E3) (taxid: 508767)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q5N665|CLPP1_SYNP6 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP1 PE=3 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 102/128 (79%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RII  G PV  D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV  G+ IF
Sbjct: 17  DIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIF 76

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT+ HIRPDVSTVCVGLAASMGAFLL+AG KGKR SL +SRIMIHQPLGGAQG   DI++
Sbjct: 77  DTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEI 136

Query: 234 QVHIMAYF 241
           Q + + Y 
Sbjct: 137 QANEILYI 144

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
76262827	306	ATP-dependent Clp protease proteolytic s	0.853	0.686	0.722	7e-85
255548433	305	ATP-dependent Clp protease proteolytic s	0.869	0.701	0.709	2e-83
224068558	300	predicted protein [Populus trichocarpa]	0.849	0.696	0.706	2e-81
449469024	306	PREDICTED: ATP-dependent Clp protease pr	0.833	0.669	0.714	2e-81
449484212	306	PREDICTED: ATP-dependent Clp protease pr	0.833	0.669	0.714	2e-81
15485610	299	Clp protease 2 proteolytic subunit [Sola	0.939	0.772	0.654	1e-80
225437581	289	PREDICTED: ATP-dependent Clp protease pr	0.825	0.702	0.714	3e-80
363806660	304	uncharacterized protein LOC100798621 [Gl	0.804	0.651	0.735	3e-80
297843050	298	hypothetical protein ARALYDRAFT_887394 [	0.955	0.788	0.636	4e-80
357511379	301	ATP-dependent Clp protease proteolytic s	0.873	0.714	0.681	4e-80

>gi|76262827|gb|ABA41488.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 156/216 (72%), Positives = 179/216 (82%), Gaps = 6/216 (2%)

Query: 25  ESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDL 84
           ES S  L   PLR RK+    + ++K      KA YTS+   L   ES+ +GIWSIR+DL
Sbjct: 30  ESQSLCLPLEPLRSRKLKKLVSNQKKVRNSTAKAVYTSN---LRMPESSHQGIWSIRDDL 86

Query: 85  EVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
           ++PSSPY P YAQG+   GPPPM+  RFQ+V+SQLFQHRIIRCGG V+DDMANIIVAQLL
Sbjct: 87  QIPSSPYFPAYAQGQ---GPPPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLL 143

Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
           YLDAVDPNKDI+MY+NSPGGSVTAGMA+FDT+RHIRPDVSTVCVGLAASMGAFLLSAGTK
Sbjct: 144 YLDAVDPNKDIVMYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTK 203

Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAY 240
           GKRYSLPNSRIMIHQPLGGAQGGQ+DID+Q + M +
Sbjct: 204 GKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLH 239

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548433|ref|XP_002515273.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223545753|gb|EEF47257.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/217 (70%), Positives = 180/217 (82%), Gaps = 3/217 (1%)

Query: 25  ESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDL 84
           +SH  SL F PLR RK    S+  +  +    KA Y+  + + +  +++ +GIWSIR+DL
Sbjct: 29  DSHKLSLPFEPLRSRKFRKLSSIRKNSQPSSAKAVYSGQFWAPE--KTSRQGIWSIRDDL 86

Query: 85  EVPSSPYIPTYAQGE-QGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQL 143
           E+PSSPY P YA G+ Q  GPPPM+  RFQ+V+SQLFQ+RIIRCGG V+DDMANIIVAQL
Sbjct: 87  EIPSSPYFPAYANGQGQAQGPPPMVHERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQL 146

Query: 144 LYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 203
           LYLDAVDPNKDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLSAGT
Sbjct: 147 LYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGT 206

Query: 204 KGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAY 240
           KGKRYSLPNSRIMIHQPLGGAQGGQSDID+Q + M +
Sbjct: 207 KGKRYSLPNSRIMIHQPLGGAQGGQSDIDIQANEMLH 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068558|ref|XP_002302770.1| predicted protein [Populus trichocarpa] gi|222844496|gb|EEE82043.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/211 (70%), Positives = 173/211 (81%), Gaps = 2/211 (0%)

Query: 30  SLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSS 89
           S  F  LR  K+    +  +  +   VKA Y+ ++ + +   S  +GIWS+R DL++PSS
Sbjct: 30  SFPFHHLRYSKLRELGSDRKAIQTSSVKAVYSGEFWAPE--RSLRQGIWSMREDLQIPSS 87

Query: 90  PYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAV 149
           P+ P YA G QG GPPPM+  RFQ+V+SQLFQHRIIRCGG V+DDMANIIVAQLLYLDAV
Sbjct: 88  PFFPAYANGAQGQGPPPMVHERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAV 147

Query: 150 DPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYS 209
           DPNKDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYS
Sbjct: 148 DPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYS 207

Query: 210 LPNSRIMIHQPLGGAQGGQSDIDLQVHIMAY 240
           LPNSRIMIHQPLGGAQGGQSDID+Q + M +
Sbjct: 208 LPNSRIMIHQPLGGAQGGQSDIDIQANEMLH 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469024|ref|XP_004152221.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like [Cucumis sativus]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/210 (71%), Positives = 176/210 (83%), Gaps = 5/210 (2%)

Query: 31  LRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSP 90
           L   P   RK+       R  + + VKA Y+ ++SS+D   ++ +GIWSIR+D++VPSS 
Sbjct: 35  LPLEPFHSRKLGKLVGGGRNLKNYPVKAMYSGEFSSMDG--NSRQGIWSIRDDVQVPSSL 92

Query: 91  YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
           Y PTYAQG+   GPPPM+  RFQ+V+SQLFQ+RIIRCGGPVEDDMANIIVAQLLYLDAVD
Sbjct: 93  YFPTYAQGQ---GPPPMVQERFQSVISQLFQYRIIRCGGPVEDDMANIIVAQLLYLDAVD 149

Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL 210
           PNKDI+MY+NSPGGSVTAGMAIFDT++HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL
Sbjct: 150 PNKDIVMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL 209

Query: 211 PNSRIMIHQPLGGAQGGQSDIDLQVHIMAY 240
           PNSRIMIHQPLGGAQG Q+DID+Q + M +
Sbjct: 210 PNSRIMIHQPLGGAQGTQTDIDIQANEMLH 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484212|ref|XP_004156818.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like [Cucumis sativus]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/210 (71%), Positives = 176/210 (83%), Gaps = 5/210 (2%)

Query: 31  LRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSP 90
           L   P   RK+       R  + + VKA Y+ ++SS+D   ++ +GIWSIR+D++VPSS 
Sbjct: 35  LPLEPFHSRKLGKLVGGGRNLKNYPVKAMYSGEFSSMD--VNSRQGIWSIRDDVQVPSSL 92

Query: 91  YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
           Y PTYAQG+   GPPPM+  RFQ+V+SQLFQ+RIIRCGGPVEDDMANIIVAQLLYLDAVD
Sbjct: 93  YFPTYAQGQ---GPPPMVQERFQSVISQLFQYRIIRCGGPVEDDMANIIVAQLLYLDAVD 149

Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL 210
           PNKDI+MY+NSPGGSVTAGMAIFDT++HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL
Sbjct: 150 PNKDIVMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL 209

Query: 211 PNSRIMIHQPLGGAQGGQSDIDLQVHIMAY 240
           PNSRIMIHQPLGGAQG Q+DID+Q + M +
Sbjct: 210 PNSRIMIHQPLGGAQGTQTDIDIQANEMLH 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15485610|emb|CAC67407.1| Clp protease 2 proteolytic subunit [Solanum lycopersicum]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/246 (65%), Positives = 188/246 (76%), Gaps = 15/246 (6%)

Query: 1   MAQSCAAALSS-----TAIFAA-FCNHFPAESHSSSLRFSPLRLRKMIVSSNRERKCEKF 54
           MA SC A  SS     +AIF + +CN  P      SL+F  L LRK + +  + +     
Sbjct: 1   MAHSCIATTSSLSKYNSAIFPSDYCNISPI-----SLQFKRLSLRK-VKAVGKVKSRGNS 54

Query: 55  GVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQN 114
            VKA Y+     L    S   GIWSIR+D+++PSSPY PTYA   QG GPPPM+  RFQ+
Sbjct: 55  TVKAVYSGGDWDLAKA-SRSSGIWSIRDDVQIPSSPYFPTYA--AQGQGPPPMVQERFQS 111

Query: 115 VLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFD 174
           V+SQLFQ+RIIRCGG V+DDMAN+IVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMA+FD
Sbjct: 112 VISQLFQYRIIRCGGAVDDDMANVIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAVFD 171

Query: 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQ 234
           T+RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDI++Q
Sbjct: 172 TMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIEIQ 231

Query: 235 VHIMAY 240
            + M +
Sbjct: 232 ANEMLH 237

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437581|ref|XP_002277104.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic isoform 1 [Vitis vinifera] gi|297743987|emb|CBI36957.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 150/210 (71%), Positives = 176/210 (83%), Gaps = 7/210 (3%)

Query: 31  LRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSP 90
           L FS  +  K++ S  R R      VKAAY+ ++ + D  +++ +G WSIR+DL++PSS 
Sbjct: 26  LSFSSRKFTKLVGSEKRLRVAP---VKAAYSGEFWAPD--KNSRQGTWSIRDDLQIPSSA 80

Query: 91  YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
           Y PTYAQG  G GPPPM+  RFQ+V+SQLFQHRIIRCGG V+DDMANIIVAQLLYLDAVD
Sbjct: 81  YFPTYAQG--GQGPPPMVQERFQSVVSQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVD 138

Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL 210
           P+KDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLS GTKGKRYSL
Sbjct: 139 PDKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSCGTKGKRYSL 198

Query: 211 PNSRIMIHQPLGGAQGGQSDIDLQVHIMAY 240
           PNSRIMIHQPLGGAQGGQ+DID+Q + M +
Sbjct: 199 PNSRIMIHQPLGGAQGGQTDIDIQANEMLH 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806660|ref|NP_001242516.1| uncharacterized protein LOC100798621 [Glycine max] gi|255645951|gb|ACU23464.1| unknown [Glycine max]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 174/204 (85%), Gaps = 6/204 (2%)

Query: 38  LRKMIVSSNRERKC-EKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYA 96
           L + +  S  +RK  +K  VKA Y  ++ + +   S+  GIWSIR+DL+VPSSPY PTYA
Sbjct: 39  LSRNLRKSVEDRKINKKSAVKAVYGDEFWTPE--RSSRPGIWSIRSDLQVPSSPYFPTYA 96

Query: 97  QGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDII 156
           QG+   GPPPM+  RFQ+V+SQLFQ+RIIRCGG V+DDMANIIVAQLLYLDAVDPNKDI+
Sbjct: 97  QGQ---GPPPMVAERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 153

Query: 157 MYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 216
           MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM
Sbjct: 154 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 213

Query: 217 IHQPLGGAQGGQSDIDLQVHIMAY 240
           IHQPLGGAQGGQ+DID+Q + M +
Sbjct: 214 IHQPLGGAQGGQTDIDIQANEMLH 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843050|ref|XP_002889406.1| hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp. lyrata] gi|297335248|gb|EFH65665.1| hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp. lyrata]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 187/245 (76%), Gaps = 10/245 (4%)

Query: 1   MAQSCAAALSSTAIF-AAFCNHFPA----ESHSSSLRFSPLRLRKMIVSSNRERKCEKFG 55
           MA +C +  +S+  F A F +  P     +S   SL F PLR RK     +  +  +   
Sbjct: 1   MAHACVSTSASSLRFTAGFVSASPNGSSFDSPKLSLPFEPLRSRKTKKLVSDRKNWKNST 60

Query: 56  VKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNV 115
            KA Y+ +  + +      +G+WSIR+DL+VPSSPY P YAQG+   GPPPM+  RFQ++
Sbjct: 61  PKAVYSGNLWTPEIPSP--QGVWSIRDDLQVPSSPYFPVYAQGQ---GPPPMVQERFQSI 115

Query: 116 LSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDT 175
           +SQLFQ+RIIRCGG V+DDMANIIVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMAIFDT
Sbjct: 116 ISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDT 175

Query: 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQV 235
           +RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ+DID+Q 
Sbjct: 176 MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA 235

Query: 236 HIMAY 240
           + M +
Sbjct: 236 NEMLH 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511379|ref|XP_003625978.1| ATP-dependent Clp protease proteolytic subunit [Medicago truncatula] gi|355500993|gb|AES82196.1| ATP-dependent Clp protease proteolytic subunit [Medicago truncatula]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 150/220 (68%), Positives = 176/220 (80%), Gaps = 5/220 (2%)

Query: 23  PAESHSSSLRF-SPL-RLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSI 80
           P  SHS +L F SP  R    +  S    +      KA Y +D+ + +  ++   GIWSI
Sbjct: 18  PTSSHSHTLSFASPSSRFSSNLGGSRNVTQKSYLKAKAVYVNDFLASEAEKNLIHGIWSI 77

Query: 81  RNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIV 140
           R DL+VPSSPY P +AQG+   GPPPM+  RFQ+V+SQLFQ+RIIRCGGPV+DDMANIIV
Sbjct: 78  REDLQVPSSPYFPVHAQGQ---GPPPMVQERFQSVISQLFQYRIIRCGGPVDDDMANIIV 134

Query: 141 AQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS 200
           +QLLYLDAVDP+KDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLS
Sbjct: 135 SQLLYLDAVDPSKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLS 194

Query: 201 AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAY 240
           AGTKGKRYSLPNSRIMIHQPLGG QGGQ+DID+Q + M +
Sbjct: 195 AGTKGKRYSLPNSRIMIHQPLGGFQGGQTDIDIQANEMLH 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2196120	298	CLPP5 "nuclear encoded CLP pro	0.662	0.546	0.819	1.8e-71
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.5	0.630	0.617	6.8e-40
UNIPROTKB|P63786	195	clpP "ATP-dependent Clp protea	0.520	0.656	0.589	4.8e-39
TIGR_CMR|CPS_3785	220	CPS_3785 "ATP-dependent Clp pr	0.5	0.559	0.626	6.1e-39
TIGR_CMR|BA_5380	193	BA_5380 "ATP-dependent Clp pro	0.5	0.637	0.609	1.6e-38
UNIPROTKB|P0A6G7	207	clpP [Escherichia coli K-12 (t	0.487	0.579	0.625	2.1e-38
TIGR_CMR|SO_1794	202	SO_1794 "ATP-dependent Clp pro	0.479	0.584	0.661	3.4e-38
TIGR_CMR|VC_1922	200	VC_1922 "ATP-dependent Clp pro	0.504	0.62	0.619	3.4e-38
TIGR_CMR|CJE_0185	194	CJE_0185 "ATP-dependent Clp pr	0.504	0.639	0.588	1.9e-37
TIGR_CMR|GSU_1792	199	GSU_1792 "ATP-dependent Clp pr	0.5	0.618	0.609	4.9e-37

TAIR|locus:2196120 CLPP5 "nuclear encoded CLP protease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 136/166 (81%), Positives = 154/166 (92%)

Query:    75 KGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDD 134
             +G+WSIR+DL+VPSSPY P YAQG+   GPPPM+  RFQ+++SQLFQ+RIIRCGG V+DD
Sbjct:    78 QGVWSIRDDLQVPSSPYFPAYAQGQ---GPPPMVQERFQSIISQLFQYRIIRCGGAVDDD 134

Query:   135 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASM 194
             MANIIVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASM
Sbjct:   135 MANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 194

Query:   195 GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAY 240
             GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ+DID+Q + M +
Sbjct:   195 GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLH 240

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 76/123 (61%), Positives = 104/123 (84%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + R I  GGP++D +AN+++AQ+L+L+A DP KDI +Y+NSPGG +TAGM
Sbjct:    17 RSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGM 76

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
             AI+DT+++I+PDVST+C+G AASMGAFLL+AG KGKR+SLP +RIMIHQPLGG QG  +D
Sbjct:    77 AIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATD 136

Query:   231 IDL 233
             ID+
Sbjct:   137 IDI 139

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P63786 clpP "ATP-dependent Clp protease proteolytic subunit" [Staphylococcus aureus subsp. aureus MW2 (taxid:196620)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 76/129 (58%), Positives = 105/129 (81%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG 
Sbjct:    16 RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
             AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG  ++
Sbjct:    76 AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATE 135

Query:   231 IDLQV-HIM 238
             I++   HI+
Sbjct:   136 IEIAANHIL 144

GO:0042802 "identical protein binding" evidence=IPI

TIGR_CMR|CPS_3785 CPS_3785 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 77/123 (62%), Positives = 101/123 (82%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + R+I   G VED MAN+I+AQLL+L++  P+KDI +Y+NSPGGSVTAGM
Sbjct:    40 RSYDIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDKDIYLYINSPGGSVTAGM 99

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
             AI+DT++ I+P++STVC+G AASMGAFLLS G KGKRY LPN+R+MIHQPLGG QG  SD
Sbjct:   100 AIYDTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNARVMIHQPLGGFQGQASD 159

Query:   231 IDL 233
              ++
Sbjct:   160 FEI 162

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|BA_5380 BA_5380 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 75/123 (60%), Positives = 103/123 (83%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + RII  G  ++D++AN IV+QLL+L++ DP KDI +Y+NSPGGS+TAGM
Sbjct:    16 RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGM 75

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
             AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS  MIHQPLGGAQG  ++
Sbjct:    76 AIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQATE 135

Query:   231 IDL 233
             I++
Sbjct:   136 IEI 138

GO:0006508 "proteolysis" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P0A6G7 clpP [Escherichia coli K-12 (taxid:83333)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 75/120 (62%), Positives = 101/120 (84%)

Query:   114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
             ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct:    32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 91

Query:   174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
             DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG  +DI++
Sbjct:    92 DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEI 151

GO:0009408 "response to heat" evidence=IEP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=EXP

TIGR_CMR|SO_1794 SO_1794 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 78/118 (66%), Positives = 99/118 (83%)

Query:   114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
             ++ S+L + RII   G VE+ MAN+IVAQLL+L++  P+KDI +Y+NSPGGSVTAGMAI+
Sbjct:    27 DIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIY 86

Query:   174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDI 231
             DT++ I+P+VSTVC+G AASMGAFLL+ G KGKR+ LPNSR+MIHQPLGG QG  SDI
Sbjct:    87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDI 144

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|VC_1922 VC_1922 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 78/126 (61%), Positives = 102/126 (80%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + R+I   G VED MAN++VAQLL+L++ +P+KDI +Y+NSPGGSVTAGM
Sbjct:    21 RSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGM 80

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
             +I+DT++ I+P+VSTVC+G A SMGAFLL+ G  GKRY LPNSR+MIHQPLGG QG  SD
Sbjct:    81 SIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASD 140

Query:   231 IDLQVH 236
             I  Q+H
Sbjct:   141 I--QIH 144

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|CJE_0185 CJE_0185 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 73/124 (58%), Positives = 100/124 (80%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + RII   G + D++A  IVAQLL+L+A DP KDI +Y+NSPGG +T+G 
Sbjct:    15 RSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGF 74

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
             +I+DT+ +I+PDV T+C+G AASMGAFLLS G +GKR++LPNSRIMIHQPLGGA+G  +D
Sbjct:    75 SIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATD 134

Query:   231 IDLQ 234
             I++Q
Sbjct:   135 IEIQ 138

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|GSU_1792 GSU_1792 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 75/123 (60%), Positives = 101/123 (82%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + RII  GGPV+D +AN+++AQ+L+L+A DP+KDI +Y+NSPGG VT+GM
Sbjct:    15 RSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGVVTSGM 74

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
             AI+DT+++I+  VST+CVG AASMGA LLS G KGKR+SL +SRIMIHQPLGG QG  +D
Sbjct:    75 AIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMIHQPLGGFQGQATD 134

Query:   231 IDL 233
             I +
Sbjct:   135 IHI 137

GO:0009368 "endopeptidase Clp complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5W635	CLPP_PSEP1	3, ., 4, ., 2, 1, ., 9, 2	0.5454	0.6016	0.6948	yes	no
Q9S834	CLPP5_ARATH	3, ., 4, ., 2, 1, ., 9, 2	0.6367	0.9552	0.7885	yes	no
Q8XYP7	CLPP_RALSO	3, ., 4, ., 2, 1, ., 9, 2	0.5238	0.6544	0.7419	yes	no
Q88KJ0	CLPP_PSEPK	3, ., 4, ., 2, 1, ., 9, 2	0.5454	0.6016	0.6948	yes	no
B1J692	CLPP_PSEPW	3, ., 4, ., 2, 1, ., 9, 2	0.5389	0.6016	0.6948	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.963
3rd Layer	3.4.21.92	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	7e-81
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	3e-73
pfam00574	182	pfam00574, CLP_protease, Clp protease	1e-72
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	2e-67
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	6e-66
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	4e-63
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	2e-60
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	1e-55
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	4e-52
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	1e-50
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	4e-46
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	2e-36
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	2e-33
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	1e-31
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	4e-21
COG0616	317	COG0616, SppA, Periplasmic serine proteases (ClpP	1e-05
cd07023	208	cd07023, S49_Sppa_N_C, Signal peptide peptidase A	2e-04

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  240 bits (615), Expect = 7e-81
 Identities = 83/124 (66%), Positives = 106/124 (85%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  GG VED MAN+IVAQLL+L+A DP+KDI +Y+NSPGGSVTAG+
Sbjct: 20  RSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL 79

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+PDVST+C+G AASMGAFLL+AG KGKR++LPNSRIMIHQPLGG QG  +D
Sbjct: 80  AIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATD 139

Query: 231 IDLQ 234
           I++ 
Sbjct: 140 IEIH 143

Length = 200

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  220 bits (563), Expect = 3e-73
 Identities = 81/120 (67%), Positives = 105/120 (87%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RII  GGP++D++AN+I+AQLLYL++ DP K I +Y+NSPGGSVTAG+AI+DT+
Sbjct: 4   SRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTM 63

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVH 236
           ++I+P VST+C+GLAASMGA LL+AGTKGKRY+LPNSRIMIHQPLGGA G  SDI++Q  
Sbjct: 64  QYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAK 123

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  218 bits (559), Expect = 1e-72
 Identities = 80/124 (64%), Positives = 111/124 (89%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R+ ++ S+L + RII  GG ++D++AN+I+AQLL+L+A DP+KDI +Y+NSPGGSVTAG+
Sbjct: 5   RWYDIYSRLLKERIIFLGGEIDDEVANLIIAQLLFLEAEDPDKDIYLYINSPGGSVTAGL 64

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+PDVST+C+GLAASMG+F+L+AGTKGKR++LPN+RIMIHQP GGAQG  SD
Sbjct: 65  AIYDTMQFIKPDVSTICLGLAASMGSFILAAGTKGKRFALPNARIMIHQPSGGAQGQASD 124

Query: 231 IDLQ 234
           I++Q
Sbjct: 125 IEIQ 128

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  206 bits (525), Expect = 2e-67
 Identities = 82/124 (66%), Positives = 105/124 (84%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   G V D++AN IVAQLL+L+A DP KDI +Y+NSPGGS+TAG+
Sbjct: 16  RSFDIYSRLLKERIIFLSGEVNDNVANSIVAQLLFLEAEDPEKDIYLYINSPGGSITAGL 75

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+SLPNSRIMIHQPLGGAQG  +D
Sbjct: 76  AIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQATD 135

Query: 231 IDLQ 234
           I++Q
Sbjct: 136 IEIQ 139

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  202 bits (517), Expect = 6e-66
 Identities = 79/124 (63%), Positives = 103/124 (83%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  GG +ED MAN+IVAQLL+L+A DP+KDI +Y+NSPGGSVTAG+
Sbjct: 16  RSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL 75

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+P VST+C+G AASMG+ LL AG KGKR++LPN+RIMIHQP GGAQG  SD
Sbjct: 76  AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASD 135

Query: 231 IDLQ 234
           I++ 
Sbjct: 136 IEIH 139

Length = 200

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  195 bits (499), Expect = 4e-63
 Identities = 73/127 (57%), Positives = 99/127 (77%), Gaps = 2/127 (1%)

Query: 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG 169
            +  +  ++LF+ RII  GG V+D  AN ++AQLL L+++DP++DI +Y+NSPGGSVTAG
Sbjct: 23  VKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAG 82

Query: 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL--GGAQGG 227
            AI+DTI+ IRPDV TVC G AAS GA LL+AGT GKR++LPN+RI+IHQP   GG +G 
Sbjct: 83  DAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQ 142

Query: 228 QSDIDLQ 234
            SD+++Q
Sbjct: 143 ASDLEIQ 149

Length = 207

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  188 bits (479), Expect = 2e-60
 Identities = 82/124 (66%), Positives = 98/124 (79%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G PV  D AN IVAQLL+L+A DP KDI +Y+NSPGGSV  G+
Sbjct: 14  RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGL 73

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
            IFDT++H++PDV TVCVGLAASMGAFLL AG KGKR SL +SRIMIHQPLGGA+G  SD
Sbjct: 74  GIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASD 133

Query: 231 IDLQ 234
           I +Q
Sbjct: 134 IRIQ 137

Length = 196

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score =  176 bits (449), Expect = 1e-55
 Identities = 51/124 (41%), Positives = 88/124 (70%), Gaps = 1/124 (0%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ ++L++ R++  G  V+D++AN ++  ++YL   D  KD+ +++NSPGGSV +G+AI+
Sbjct: 22  DLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIY 81

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ-SDID 232
           DT++ ++PDV T+C+GLAASM +F+L+ G   KR + P++R+MIHQP      GQ S+  
Sbjct: 82  DTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFV 141

Query: 233 LQVH 236
           L+  
Sbjct: 142 LEAE 145

Length = 200

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  168 bits (426), Expect = 4e-52
 Identities = 74/120 (61%), Positives = 94/120 (78%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V S+L   RII  G  ++D  AN I AQLLYLD+VDP KDI +Y+NSPGGSV AG+ I+
Sbjct: 46  DVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIY 105

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT++ I  DV+T+C G+AASM + LL AGTKGKR +LP+SR+MIHQPLGGAQG  SDI++
Sbjct: 106 DTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEI 165

Length = 221

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  162 bits (411), Expect = 1e-50
 Identities = 63/109 (57%), Positives = 78/109 (71%)

Query: 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPD 182
           R I   G VED  AN   AQLL+L AV+P KDI +Y+NSPGG V AGMAI+DTI+ I+ D
Sbjct: 1   REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKAD 60

Query: 183 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDI 231
           V T+  GLAASMG+ +  AG KGKR+ LPN+ +MIHQP GG  G  +D+
Sbjct: 61  VVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDM 109

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  152 bits (385), Expect = 4e-46
 Identities = 69/124 (55%), Positives = 92/124 (74%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G P+E  MAN IVAQLL LD+ +P ++I MY+N PGG V AG+
Sbjct: 16  RMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGL 75

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT+R+I+  VST+CVG+A SMG+ LL AG KGKR +LPNSRIMIHQ   G +G   D
Sbjct: 76  AIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPD 135

Query: 231 IDLQ 234
           +++Q
Sbjct: 136 LEVQ 139

Length = 201

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score =  127 bits (322), Expect = 2e-36
 Identities = 62/147 (42%), Positives = 82/147 (55%), Gaps = 26/147 (17%)

Query: 104 PPPMLLGRFQNVLSQLFQHRIIRCGGP----------VEDDMANIIVAQLLYLDAVDPNK 153
           PPP L        S L + RI+  G P          V  D+  +I+AQLLYL+  DP K
Sbjct: 19  PPPDLP-------SLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEK 71

Query: 154 DIIMYLNSPGGSV---------TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
            I  Y+NS G S          T   AI DT+R+I+P V T+C+G A    A +LSAGTK
Sbjct: 72  PIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTK 131

Query: 205 GKRYSLPNSRIMIHQPLGGAQGGQSDI 231
           G+R SLP++ I++HQP  GA+G  +DI
Sbjct: 132 GQRASLPHATIVLHQPRSGARGQATDI 158

Length = 222

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  119 bits (300), Expect = 2e-33
 Identities = 47/121 (38%), Positives = 74/121 (61%)

Query: 113 QNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI 172
              L +  + R I   G +  D++ +   ++L L+A+D  K I +Y++S GG + AG AI
Sbjct: 14  DKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAI 73

Query: 173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDID 232
           F+ IR ++P V T+ VGL AS  A +  A  K  R+SLPN+R ++HQPL G +G  +DI+
Sbjct: 74  FNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIE 133

Query: 233 L 233
           +
Sbjct: 134 I 134

Length = 197

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score =  113 bits (285), Expect = 1e-31
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDV 183
           +I   G +ED  A+ + AQ+ + +A +  K I++ +N+PGG V AGM I D ++  R  V
Sbjct: 1   VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPV 60

Query: 184 STVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVH------I 237
                G AAS G ++ +A    K    P +R+  H P+GG  G  +    +         
Sbjct: 61  IAYVGGQAASAGYYIATAAN--KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYF 118

Query: 238 MAYFLTLA 245
           +A F++L 
Sbjct: 119 IARFISLV 126

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 86.4 bits (215), Expect = 4e-21
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 146 LDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKG 205
           LDA+  + DI + +NSPGG V AG+AI++ ++  +  V+    GLAAS  + +  AG   
Sbjct: 24  LDALGDDSDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGD-- 81

Query: 206 KRYSLPNSRIMIHQPLGGAQGGQSD 230
           +    PN+ +MIH P  GA G   D
Sbjct: 82  EVEMPPNAMLMIHNPSTGAAGNADD 106

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

>gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 148 AVDPN-KDIIMYLNSPGGSVTAGMAIFDTIRHIR-PDVSTVCVG-LAASMGAFLLSAGTK 204
             DP+ K +++ +NSPGGSV A   I   ++ +R      V VG  AAS G + ++    
Sbjct: 93  RADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAAS-GGYYIALAAD 151

Query: 205 GKRYSLPNSRI 215
            K  + P+S  
Sbjct: 152 -KIVADPSSIT 161

Length = 317

>gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 150 DPN-KDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLSAGT 203
           D + K +++ +NSPGGSV A   I+  IR +R     V      +AAS G + ++A  
Sbjct: 32  DDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAAS-GGYYIAAAA 88

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	100.0
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	100.0
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	100.0
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.92
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.89
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.86
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.81
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.78
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	99.54
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.38
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.35
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.26
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	99.22
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.21
PRK11778	330	putative inner membrane peptidase; Provisional	99.18
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.17
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	99.16
PRK10949	618	protease 4; Provisional	99.16
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.12
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.88
COG3904	245	Predicted periplasmic protein [Function unknown]	98.28
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.82
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	97.8
PRK10949	618	protease 4; Provisional	97.68
PRK06688	259	enoyl-CoA hydratase; Provisional	97.35
PRK08258	277	enoyl-CoA hydratase; Provisional	97.24
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.17
PRK06072	248	enoyl-CoA hydratase; Provisional	97.17
PRK06495	257	enoyl-CoA hydratase; Provisional	97.17
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.16
PRK07511	260	enoyl-CoA hydratase; Provisional	97.13
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.09
PRK06210	272	enoyl-CoA hydratase; Provisional	97.09
PRK05981	266	enoyl-CoA hydratase; Provisional	97.08
PRK05869	222	enoyl-CoA hydratase; Validated	97.07
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	97.07
PRK06143	256	enoyl-CoA hydratase; Provisional	97.02
PRK07509	262	enoyl-CoA hydratase; Provisional	97.01
PRK06190	258	enoyl-CoA hydratase; Provisional	97.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	97.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	97.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	96.98
PRK07468	262	enoyl-CoA hydratase; Provisional	96.95
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.95
PLN02600	251	enoyl-CoA hydratase	96.95
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	96.94
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	96.94
PRK05864	276	enoyl-CoA hydratase; Provisional	96.93
PRK07854	243	enoyl-CoA hydratase; Provisional	96.93
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	96.92
PRK06023	251	enoyl-CoA hydratase; Provisional	96.92
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	96.92
PRK08138	261	enoyl-CoA hydratase; Provisional	96.91
PRK08260	296	enoyl-CoA hydratase; Provisional	96.89
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	96.88
PRK09076	258	enoyl-CoA hydratase; Provisional	96.86
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	96.86
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	96.82
PRK08150	255	enoyl-CoA hydratase; Provisional	96.78
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	96.78
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	96.78
PRK05980	260	enoyl-CoA hydratase; Provisional	96.78
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	96.77
PRK05995	262	enoyl-CoA hydratase; Provisional	96.76
PRK06142	272	enoyl-CoA hydratase; Provisional	96.75
PLN02921	327	naphthoate synthase	96.73
PRK07260	255	enoyl-CoA hydratase; Provisional	96.73
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	96.72
PLN02888	265	enoyl-CoA hydratase	96.69
PRK07658	257	enoyl-CoA hydratase; Provisional	96.68
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.68
PRK07327	268	enoyl-CoA hydratase; Provisional	96.66
PRK09245	266	enoyl-CoA hydratase; Provisional	96.65
PRK07938	249	enoyl-CoA hydratase; Provisional	96.65
PRK05870	249	enoyl-CoA hydratase; Provisional	96.64
PRK08140	262	enoyl-CoA hydratase; Provisional	96.63
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	96.61
PRK07657	260	enoyl-CoA hydratase; Provisional	96.6
PRK08272	302	enoyl-CoA hydratase; Provisional	96.59
PRK06127	269	enoyl-CoA hydratase; Provisional	96.58
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	96.55
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	96.54
PRK08290	288	enoyl-CoA hydratase; Provisional	96.52
PRK06144	262	enoyl-CoA hydratase; Provisional	96.51
PRK08321	302	naphthoate synthase; Validated	96.5
PRK06494	259	enoyl-CoA hydratase; Provisional	96.5
PRK05862	257	enoyl-CoA hydratase; Provisional	96.49
PRK08139	266	enoyl-CoA hydratase; Validated	96.49
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	96.48
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	96.45
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	96.41
PRK06563	255	enoyl-CoA hydratase; Provisional	96.4
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	96.37
PRK12478	298	enoyl-CoA hydratase; Provisional	96.35
PRK07827	260	enoyl-CoA hydratase; Provisional	96.32
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	96.31
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	96.29
PRK06213	229	enoyl-CoA hydratase; Provisional	96.24
PRK07659	260	enoyl-CoA hydratase; Provisional	96.21
PRK08788	287	enoyl-CoA hydratase; Validated	96.2
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	96.18
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	96.16
PRK08252	254	enoyl-CoA hydratase; Provisional	96.13
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	96.07
PRK07799	263	enoyl-CoA hydratase; Provisional	95.82
PRK08259	254	enoyl-CoA hydratase; Provisional	95.8
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	95.62
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	95.47
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	95.34
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	95.3
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.3
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	95.29
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	95.24
PRK11730	715	fadB multifunctional fatty acid oxidation complex	95.0
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	94.94
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	94.92
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	94.82
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	93.95
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	93.88
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	93.36
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	93.15
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	91.46
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	91.02
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	90.36
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	88.62
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	88.4
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	85.87
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	85.23
PF08496	155	Peptidase_S49_N: Peptidase family S49 N-terminal;	84.02
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	80.84

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-52  Score=374.96  Aligned_cols=199  Identities=47%  Similarity=0.733  Sum_probs=181.1

Q ss_pred             ccccccccchhhhhhhhhcccccccccccceeeeecCCCccccCCCCCCccceeeccCCCCCCCCCcccccCCCCCCCCC
Q 025891           26 SHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPP  105 (246)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (246)
                      +.++...+.|...++|.+....+|..++++-++++++.-|++        +.|+++.+..+|..++..   .+   +|  
T Consensus        15 ~~~~~~~l~P~~~~~~~~~~~~~r~~~~~~~~s~~sg~~~~~--------~~~~~~~~~~~p~~~~~~---~~---rG--   78 (275)
T KOG0840|consen   15 SPKRFSGLNPASTSNFPKQRNVRRQLKSSTPKSLRSGGSSNS--------RGWSLRAPILVPRFPIES---PG---RG--   78 (275)
T ss_pred             ccchhcccCchhhhhccccccchhhhhccCcccccccCCCCC--------CcccccccccCCcceeec---cc---cC--
Confidence            666777888888899998888888888888899999988773        279999999999443333   22   23  


Q ss_pred             CccchhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEE
Q 025891          106 PMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST  185 (246)
Q Consensus       106 p~~~~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~T  185 (246)
                         .|+++|++++||++|||||+++|||++++.+++||+||+++|++|+|++|||||||++++|++|||+|+++++||.|
T Consensus        79 ---~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~T  155 (275)
T KOG0840|consen   79 ---RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVST  155 (275)
T ss_pred             ---CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCcee
Confidence               36677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~  243 (246)
                      +|.|+|||||++||+||.||+|+++||+++|||||.++++|++.||.++|+|+.+++.
T Consensus       156 ic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~  213 (275)
T KOG0840|consen  156 ICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKE  213 (275)
T ss_pred             eehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999875

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-45  Score=322.92  Aligned_cols=134  Identities=59%  Similarity=0.965  Sum_probs=130.5

Q ss_pred             hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      +.+|+|++|+++|+|||+|+|++.+++.+++||++|+++++.|+|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus        16 ~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G~   95 (200)
T COG0740          16 RSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMGQ   95 (200)
T ss_pred             ChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEecH
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |||||++|++||++|||+++|||++|||||+++++|+++||+++|+||++++..
T Consensus        96 AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~  149 (200)
T COG0740          96 AASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKER  149 (200)
T ss_pred             HHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998764

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=5.4e-43  Score=310.77  Aligned_cols=150  Identities=41%  Similarity=0.674  Sum_probs=136.6

Q ss_pred             CCCCCCCCcccccCCCCCCCCCCccchhhccHhhhhccCcEEEeccccChh----------HHHHHHHHHHhhhhcCCCC
Q 025891           84 LEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDD----------MANIIVAQLLYLDAVDPNK  153 (246)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dv~s~L~~~RIIfL~G~Idd~----------~A~~iiaqLl~L~~~d~~k  153 (246)
                      ..+|..||.....    .+.+||       |++++|+++|||||+++||++          +++.+++||++|+.+++.+
T Consensus         3 ~~~~~~~~~~~~~----~~~~~~-------d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k   71 (222)
T PRK12552          3 IMAVQAPYYGDAV----MRTPPP-------DLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEK   71 (222)
T ss_pred             CCcccccccCCCC----CCCCCc-------CHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCC
Confidence            4556666655421    233444       699999999999999999999          9999999999999999999


Q ss_pred             CeEEEEeCCCCC---------HHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          154 DIIMYLNSPGGS---------VTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       154 ~I~L~INSPGGs---------V~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      +|+||||||||+         |++|++|||+|++++++|+|+|.|+|||||++|+++|++|||+++|||++|||||++++
T Consensus        72 ~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~  151 (222)
T PRK12552         72 PIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA  151 (222)
T ss_pred             CEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc
Confidence            999999999988         77889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhh
Q 025891          225 QGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       225 ~G~a~Di~i~A~eL~k~~~~  244 (246)
                      +|+++||+++|+||+++|+.
T Consensus       152 ~G~A~di~~~a~el~~~r~~  171 (222)
T PRK12552        152 RGQATDIQIRAKEVLHNKRT  171 (222)
T ss_pred             ccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999864

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=3.1e-43  Score=312.09  Aligned_cols=134  Identities=55%  Similarity=0.868  Sum_probs=130.4

Q ss_pred             hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.|++++||++|||||+|+||+.+++.+++||++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus        43 ~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G~  122 (221)
T PRK14514         43 TQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGM  122 (221)
T ss_pred             cccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |||||++|+++|++|||+|+|||++|||||++++.|+++|++++++||+++++.
T Consensus       123 AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~  176 (221)
T PRK14514        123 AASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKE  176 (221)
T ss_pred             ehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998864

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=7.7e-43  Score=305.58  Aligned_cols=134  Identities=51%  Similarity=0.862  Sum_probs=130.3

Q ss_pred             hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.|++++|+++|||||+++||+++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus        16 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~   95 (201)
T PRK14513         16 RMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGI   95 (201)
T ss_pred             cccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEee
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |||||++|++||++|||++.|||++|||||++++.|++.|++++|+||+++++.
T Consensus        96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~  149 (201)
T PRK14513         96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDT  149 (201)
T ss_pred             ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998764

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=1.5e-42  Score=303.01  Aligned_cols=134  Identities=37%  Similarity=0.756  Sum_probs=130.5

Q ss_pred             hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      +|.|++++|+++|||||+++||+++++.+++||++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+
T Consensus        19 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G~   98 (200)
T CHL00028         19 TWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLGL   98 (200)
T ss_pred             ccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEe
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC-CCCCHHHHHHHHHHHHHHhhh
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG-AQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g-~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |||||++|+++|++|+|++.|||++|||||+++ ..|+++|+++++++|+++++.
T Consensus        99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~  153 (200)
T CHL00028         99 AASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRET  153 (200)
T ss_pred             hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998 899999999999999998864

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=4.9e-42  Score=299.17  Aligned_cols=133  Identities=61%  Similarity=0.961  Sum_probs=129.4

Q ss_pred             hccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcccc
Q 025891          112 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLA  191 (246)
Q Consensus       112 ~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~A  191 (246)
                      +.|++++|+++|||||+++||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+|
T Consensus        15 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~A   94 (196)
T PRK12551         15 AFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLA   94 (196)
T ss_pred             ccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      ||||++|+++|++|+|+|.|||++|||||+++..|+++|+++++++|+++++.
T Consensus        95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~  147 (196)
T PRK12551         95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKER  147 (196)
T ss_pred             hhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=2.7e-38  Score=273.53  Aligned_cols=134  Identities=63%  Similarity=1.021  Sum_probs=129.7

Q ss_pred             hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.|++++|+++|||||+|+||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus        15 ~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~   94 (191)
T TIGR00493        15 RSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGQ   94 (191)
T ss_pred             ccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |||||++|+++|++++|+|.|||++|||||+++..|++.|+++++++|.++++.
T Consensus        95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~  148 (191)
T TIGR00493        95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGL  148 (191)
T ss_pred             eccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998999999999999999998864

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=2e-37  Score=269.82  Aligned_cols=131  Identities=36%  Similarity=0.671  Sum_probs=126.8

Q ss_pred             cHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccch
Q 025891          114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       114 dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      +++++|+++|+|||+|+||+++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+|||
T Consensus        15 ~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~AaS   94 (197)
T PRK14512         15 KSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVAS   94 (197)
T ss_pred             hHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeHh
Confidence            58999999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      ||++|+++|++|+|++.|||++|||||++++.|+++|+++++++|+++++.
T Consensus        95 aaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~  145 (197)
T PRK14512         95 AAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSE  145 (197)
T ss_pred             HHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988753

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=3.4e-36  Score=261.84  Aligned_cols=134  Identities=62%  Similarity=1.019  Sum_probs=129.8

Q ss_pred             hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      .|.|++++|+++|||||+|+||+++++.++++|++++.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|.
T Consensus        20 ~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~   99 (200)
T PRK00277         20 RSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICIGQ   99 (200)
T ss_pred             ccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEEEeE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |+|+|++|+++|++++|++.||+++|||||+++..|++.|++++++++.++++.
T Consensus       100 aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~  153 (200)
T PRK00277        100 AASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKR  153 (200)
T ss_pred             eccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998753

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.2e-36  Score=255.66  Aligned_cols=135  Identities=44%  Similarity=0.747  Sum_probs=127.9

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++|+||+++|+++|+|||.|+||+++++.++++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|
T Consensus         4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G   83 (182)
T PF00574_consen    4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG   83 (182)
T ss_dssp             EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred             cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence            47899999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      .|+|+|++|+++|++++|++.|+|+||+|+|+.+..|++.|+++++++|.++++.
T Consensus        84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~  138 (182)
T PF00574_consen   84 LAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNER  138 (182)
T ss_dssp             EEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             ccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=1.2e-35  Score=259.74  Aligned_cols=132  Identities=55%  Similarity=0.911  Sum_probs=127.4

Q ss_pred             ccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccc
Q 025891          113 QNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA  192 (246)
Q Consensus       113 ~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AA  192 (246)
                      .|++++|+++|+|||+|+||+++++.|+++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|.|+
T Consensus        26 ~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~aa  105 (207)
T PRK12553         26 SDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQAA  105 (207)
T ss_pred             ccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeehh
Confidence            58999999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             hHHHHHHccCCCCcEEecCCcEEEEEcCC--CCCCCCHHHHHHHHHHHHHHhhh
Q 025891          193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPL--GGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~--~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |||++|+++|++|+|++.|||++|||||+  ++..|++.|+++++++|.++++.
T Consensus       106 Saa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~  159 (207)
T PRK12553        106 SAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRER  159 (207)
T ss_pred             hHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999  66899999999999999998753

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=1.4e-34  Score=244.70  Aligned_cols=131  Identities=62%  Similarity=1.042  Sum_probs=126.8

Q ss_pred             cHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccch
Q 025891          114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       114 dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      |++++|+++|+|||+|+|++++++.|+++|++++.+++.++|+|+||||||+|++|++|||+|++++.+|+|+|.|+|+|
T Consensus         1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS   80 (171)
T cd07017           1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS   80 (171)
T ss_pred             ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence            68999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      +|++|+++|++|+|++.|+|++|+|+|+++..|+++|+++.+++|.++++.
T Consensus        81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~  131 (171)
T cd07017          81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRR  131 (171)
T ss_pred             HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999988899999999999999999999999999999999998764

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=7.9e-33  Score=233.07  Aligned_cols=122  Identities=52%  Similarity=0.797  Sum_probs=118.4

Q ss_pred             cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccC
Q 025891          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG  202 (246)
Q Consensus       123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AG  202 (246)
                      |+|||+|+|++.+++.|+++|++++.+++.++|+|+||||||+|+++++|||+|+.++.+|+|+|.|+|+|+|++|+++|
T Consensus         1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~   80 (162)
T cd07013           1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG   80 (162)
T ss_pred             CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence            79999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          203 TKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       203 dkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      ++|+|++.|++++|||||+++..|++.|+++.++++.++++.
T Consensus        81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~  122 (162)
T cd07013          81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGN  122 (162)
T ss_pred             CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.92  E-value=3e-24  Score=178.31  Aligned_cols=115  Identities=30%  Similarity=0.415  Sum_probs=107.7

Q ss_pred             EEEeccccCh---hHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHc
Q 025891          124 IIRCGGPVED---DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS  200 (246)
Q Consensus       124 IIfL~G~Idd---~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~  200 (246)
                      -|||+|+||+   .+++.+.++|.+++.+   ++|.|+||||||++.++++|++.|+.++.||+|++.|.|+|+|++|++
T Consensus         2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~   78 (160)
T cd07016           2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM   78 (160)
T ss_pred             EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence            4899999999   7999999999877643   899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891          201 AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       201 AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~  243 (246)
                      +||+  |++.|+++||+|+|.++..|+..++++..++++++++
T Consensus        79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  119 (160)
T cd07016          79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDE  119 (160)
T ss_pred             cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHH
Confidence            9998  9999999999999999999999999999998887654

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.89  E-value=1.1e-22  Score=174.63  Aligned_cols=118  Identities=20%  Similarity=0.274  Sum_probs=107.4

Q ss_pred             EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEc---cccchHHHHHHc
Q 025891          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS  200 (246)
Q Consensus       124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~---G~AASaAslIl~  200 (246)
                      +|.+.|.|++.....+...|...+ +++.+.|.|+||||||+++++++|||+|++.+.||.|+|.   |+|+|+|++|++
T Consensus         3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~   81 (172)
T cd07015           3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL   81 (172)
T ss_pred             EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence            578999999998888877776544 3568999999999999999999999999999999999999   999999999999


Q ss_pred             cCCCCcEEecCCcEEEEEcCCCCCCCC-----HHHHHHHHHHHHHHhhhc
Q 025891          201 AGTKGKRYSLPNSRIMIHQPLGGAQGG-----QSDIDLQVHIMAYFLTLA  245 (246)
Q Consensus       201 AGdkgkR~a~pnS~iMIHqP~~g~~G~-----a~Di~i~A~eL~k~~~~~  245 (246)
                      +|++  |+|.|++++|.|+|..+ .|+     ..|.+++++++.++|++|
T Consensus        82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~~A  128 (172)
T cd07015          82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKSLA  128 (172)
T ss_pred             hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHHHH
Confidence            9999  99999999999999865 366     789999999999999876

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.86  E-value=6.3e-21  Score=157.48  Aligned_cols=117  Identities=33%  Similarity=0.545  Sum_probs=106.5

Q ss_pred             EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCC
Q 025891          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT  203 (246)
Q Consensus       124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGd  203 (246)
                      ||+|+|+|++.+.+.++++|..++.+++.+.|.|++|||||++.++..|+++|+.++.||++++.|.|+|+|++|+++||
T Consensus         1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d   80 (161)
T cd00394           1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN   80 (161)
T ss_pred             CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence            58999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEecCCcEEEEEcCCCCCCCCH--HHHHHHHHHHHHHh
Q 025891          204 KGKRYSLPNSRIMIHQPLGGAQGGQ--SDIDLQVHIMAYFL  242 (246)
Q Consensus       204 kgkR~a~pnS~iMIHqP~~g~~G~a--~Di~i~A~eL~k~~  242 (246)
                      +  |++.|++++++|+|..+..|..  .++++..+++..+.
T Consensus        81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  119 (161)
T cd00394          81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFI  119 (161)
T ss_pred             E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHH
Confidence            8  9999999999999997766544  67776666665543

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.81  E-value=2.4e-19  Score=153.57  Aligned_cols=99  Identities=19%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEc---cccchHHHHHHc
Q 025891          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS  200 (246)
Q Consensus       124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~---G~AASaAslIl~  200 (246)
                      +|.|.|.|++..++.+.++|..++.+ +.+.|.|+||||||+++++..|++.|+.++.||.+.|.   |.|+|+|++|++
T Consensus         3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial   81 (187)
T cd07020           3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL   81 (187)
T ss_pred             EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence            68899999999999999999988754 48999999999999999999999999999999999998   999999999999


Q ss_pred             cCCCCcEEecCCcEEEEEcCCCCCC
Q 025891          201 AGTKGKRYSLPNSRIMIHQPLGGAQ  225 (246)
Q Consensus       201 AGdkgkR~a~pnS~iMIHqP~~g~~  225 (246)
                      +||.  |++.|+++|++|+|..+..
T Consensus        82 a~D~--iva~p~a~~g~~~~~~~~~  104 (187)
T cd07020          82 AAHI--AAMAPGTNIGAAHPVAIGG  104 (187)
T ss_pred             hCCc--eeECCCCcEEeccccccCC
Confidence            9999  9999999999999985433

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.78  E-value=2.5e-18  Score=147.78  Aligned_cols=119  Identities=23%  Similarity=0.317  Sum_probs=102.0

Q ss_pred             EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCC
Q 025891          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT  203 (246)
Q Consensus       124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGd  203 (246)
                      +|.+.|.|++..+..+...|.....+ +.+.|.|+||||||.++++..|++.|+.++.||++++.|.|+|+|++|+++||
T Consensus         3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d   81 (178)
T cd07021           3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD   81 (178)
T ss_pred             EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence            67899999999888888877665544 47899999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 025891          204 KGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLA  245 (246)
Q Consensus       204 kgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~~  245 (246)
                      +  ++|.|++.++.|.|.....++..+-+.......+++.+|
T Consensus        82 ~--i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A  121 (178)
T cd07021          82 E--IYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAA  121 (178)
T ss_pred             e--EEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHH
Confidence            9  999999999999999766555555555555555555554

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.54  E-value=1.9e-14  Score=133.36  Aligned_cols=103  Identities=27%  Similarity=0.319  Sum_probs=86.6

Q ss_pred             EEEeccccChhH-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCC--CeEEEEccccchH
Q 025891          124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRP--DVSTVCVGLAASM  194 (246)
Q Consensus       124 IIfL~G~Idd~~-------A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~--~V~Tvv~G~AASa  194 (246)
                      +|.+.|.|....       .+.+.+.|..+..+++.+.|.|+||||||+|.++..||++|+.++.  ||++++.++|||+
T Consensus        63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG  142 (317)
T COG0616          63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG  142 (317)
T ss_pred             EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence            677888887533       5566677777788888999999999999999999999999999987  5999999999999


Q ss_pred             HHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHH
Q 025891          195 GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDID  232 (246)
Q Consensus       195 AslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~  232 (246)
                      |++|+|+||+  ++|.|+|.+.    +-|+.++..++.
T Consensus       143 GY~IA~aAd~--I~a~p~si~G----SIGVi~~~~~~~  174 (317)
T COG0616         143 GYYIALAADK--IVADPSSITG----SIGVISGAPNFE  174 (317)
T ss_pred             hhhhhccCCE--EEecCCceee----eceeEEecCCHH
Confidence            9999999999  9999999987    444444444443

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.38  E-value=3e-12  Score=111.40  Aligned_cols=91  Identities=21%  Similarity=0.338  Sum_probs=82.9

Q ss_pred             EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC--CCeEEEEccccchHHHHHHcc
Q 025891          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAASMGAFLLSA  201 (246)
Q Consensus       124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k--~~V~Tvv~G~AASaAslIl~A  201 (246)
                      +|.|.|.|+ .+.+.+.+.|..+..++..+.|.|++|||||++..+..|++.|+.++  .||++++.|.|+|+|++|+++
T Consensus         4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a   82 (207)
T TIGR00706         4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA   82 (207)
T ss_pred             EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence            788999998 55677888888887777789999999999999999999999999998  899999999999999999999


Q ss_pred             CCCCcEEecCCcEEEE
Q 025891          202 GTKGKRYSLPNSRIMI  217 (246)
Q Consensus       202 GdkgkR~a~pnS~iMI  217 (246)
                      ||+  |+|.|++.++.
T Consensus        83 aD~--i~a~p~a~vg~   96 (207)
T TIGR00706        83 ADE--IVANPGTITGS   96 (207)
T ss_pred             CCE--EEECCCCeEEe
Confidence            999  99999998654

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.35  E-value=5.1e-12  Score=109.44  Aligned_cols=92  Identities=28%  Similarity=0.379  Sum_probs=84.4

Q ss_pred             cEEEeccccC---hhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhh---CCCeEEEEccccchHHH
Q 025891          123 RIIRCGGPVE---DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGA  196 (246)
Q Consensus       123 RIIfL~G~Id---d~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~---k~~V~Tvv~G~AASaAs  196 (246)
                      -+|+|.|.|+   +.+...+..+|..+..++..+.|.|++|||||++..+..|+++|+.+   +.||++++.|.|+|+|+
T Consensus         3 ~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~   82 (208)
T cd07023           3 AVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGY   82 (208)
T ss_pred             EEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHH
Confidence            3789999999   78899999999999887789999999999999999999999988766   46999999999999999


Q ss_pred             HHHccCCCCcEEecCCcEEE
Q 025891          197 FLLSAGTKGKRYSLPNSRIM  216 (246)
Q Consensus       197 lIl~AGdkgkR~a~pnS~iM  216 (246)
                      +|+++||+  |++.|++.+.
T Consensus        83 ~lA~aaD~--i~a~~~s~~g  100 (208)
T cd07023          83 YIAAAADK--IVANPTTITG  100 (208)
T ss_pred             HHHhhCCE--EEECCCCeEE
Confidence            99999999  9999999883

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.26  E-value=1.6e-11  Score=122.29  Aligned_cols=90  Identities=28%  Similarity=0.335  Sum_probs=79.0

Q ss_pred             EEEeccccChh-------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC---CCeEEEEccccch
Q 025891          124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAAS  193 (246)
Q Consensus       124 IIfL~G~Idd~-------~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k---~~V~Tvv~G~AAS  193 (246)
                      +|++.|+|.+.       ..+.+.++|..+..++..+.|.|+||||||++.++..|+++|+..+   .||++.+.|+|||
T Consensus       312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS  391 (584)
T TIGR00705       312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS  391 (584)
T ss_pred             EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence            89999999752       2456777777777666789999999999999999999999998664   7899999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEE
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRI  215 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~i  215 (246)
                      +|++|+++||+  ++|.|++.+
T Consensus       392 ggY~iA~aaD~--I~a~p~t~~  411 (584)
T TIGR00705       392 GGYWIASAADY--IVASPNTIT  411 (584)
T ss_pred             HHHHHHHhCCE--EEECCCCee
Confidence            99999999999  999999987

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=99.22  E-value=4.3e-11  Score=110.09  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=79.4

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEE
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRY  208 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~  208 (246)
                      ..||.+.++.+...+.   ..++.++|.|.||||||.|.++..|.+.|+.++.+++++|...|.|+|++|+++||+  ++
T Consensus        70 ~~I~i~dse~v~raI~---~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe--Iv  144 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIR---EAPKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE--IV  144 (285)
T ss_pred             eeEcHhhHHHHHHHHH---hcCCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--EE
Confidence            4477777888877664   334567899999999999999999999999999999999999999999999999999  99


Q ss_pred             ecCCcEEEEEcCCCC
Q 025891          209 SLPNSRIMIHQPLGG  223 (246)
Q Consensus       209 a~pnS~iMIHqP~~g  223 (246)
                      |.|+|.++--.|..+
T Consensus       145 M~p~a~LGpiDPqi~  159 (285)
T PF01972_consen  145 MGPGAVLGPIDPQIG  159 (285)
T ss_pred             ECCCCccCCCCcccc
Confidence            999999997777643

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.21  E-value=8.8e-11  Score=102.57  Aligned_cols=92  Identities=25%  Similarity=0.302  Sum_probs=80.7

Q ss_pred             EEEeccccCh-----------hHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC--CCeEEEEccc
Q 025891          124 IIRCGGPVED-----------DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGL  190 (246)
Q Consensus       124 IIfL~G~Idd-----------~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k--~~V~Tvv~G~  190 (246)
                      +|.+.|.|.+           .+...+.++|..++.++..+.|.|.+|||||++.....|+++|+.++  .||++++.|.
T Consensus         4 vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~   83 (214)
T cd07022           4 VIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGL   83 (214)
T ss_pred             EEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            4555566654           45678889999888877889999999999999999999999999998  9999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEE
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMI  217 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMI  217 (246)
                      |+|+|++|+++||+  +++.|++.+..
T Consensus        84 a~s~gy~lA~~aD~--i~a~~~a~~g~  108 (214)
T cd07022          84 AASAAYWIASAADR--IVVTPTAGVGS  108 (214)
T ss_pred             hhhHHHHHHhcCCE--EEEcCCCeEEe
Confidence            99999999999998  99999999643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PRK11778 putative inner membrane peptidase; Provisional

Probab=99.18  E-value=9.1e-11  Score=110.24  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=71.1

Q ss_pred             EEEeccccChhHHHHHHHHHHhh-hhcCCCCCeEEEEeCCCCCHHHHHHHHHH---HhhhCCCeEEEEccccchHHHHHH
Q 025891          124 IIRCGGPVEDDMANIIVAQLLYL-DAVDPNKDIIMYLNSPGGSVTAGMAIFDT---IRHIRPDVSTVCVGLAASMGAFLL  199 (246)
Q Consensus       124 IIfL~G~Idd~~A~~iiaqLl~L-~~~d~~k~I~L~INSPGGsV~aGlaIyD~---Ir~~k~~V~Tvv~G~AASaAslIl  199 (246)
                      +|.+.|.|+......+.+++..+ +...+.+.|.|.||||||+|.+.-.++..   ++..+.||++++.++|||+|++|+
T Consensus        94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA  173 (330)
T PRK11778         94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA  173 (330)
T ss_pred             EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence            67789999976554444444432 22333478999999999999875555544   444557999999999999999999


Q ss_pred             ccCCCCcEEecCCcEEEE
Q 025891          200 SAGTKGKRYSLPNSRIMI  217 (246)
Q Consensus       200 ~AGdkgkR~a~pnS~iMI  217 (246)
                      |+||+  +++.|.+.++.
T Consensus       174 saAD~--I~A~P~a~vGS  189 (330)
T PRK11778        174 CVADK--IIAAPFAIVGS  189 (330)
T ss_pred             HhCCE--EEECCCCeEEe
Confidence            99999  99999999874

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.17  E-value=1.4e-10  Score=98.09  Aligned_cols=87  Identities=25%  Similarity=0.210  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhh---CCCeEEEEccccchHHHHHHccCCCCcEEecC
Q 025891          135 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLP  211 (246)
Q Consensus       135 ~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~---k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~p  211 (246)
                      +.+.+.++|..++.++..+.|.|.+|||||++.....|+++++.+   +.||.+++.|.|+|+|+.|+++||.  |+|.|
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~  100 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP  100 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence            356788888888877778999999999999999888887766554   6899999999999999999999999  99999


Q ss_pred             CcEEEEEcCCCC
Q 025891          212 NSRIMIHQPLGG  223 (246)
Q Consensus       212 nS~iMIHqP~~g  223 (246)
                      ++.|++|....+
T Consensus       101 ~a~~~~~G~~~~  112 (177)
T cd07014         101 STLVGSIGIFGV  112 (177)
T ss_pred             CCeEEEechHhh
Confidence            999999977654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.3e-10  Score=112.31  Aligned_cols=98  Identities=22%  Similarity=0.339  Sum_probs=87.6

Q ss_pred             cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEc---cccchHHHHHH
Q 025891          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLL  199 (246)
Q Consensus       123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~---G~AASaAslIl  199 (246)
                      .++.+.|+||+.+++.+...|..-+. +....+.|.+|+|||-+++...|..+|...+.||+.++.   ++|+|+|++|+
T Consensus        29 ~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~  107 (436)
T COG1030          29 YVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL  107 (436)
T ss_pred             EEEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence            46889999999999999988875544 346899999999999999999999999999999887764   48999999999


Q ss_pred             ccCCCCcEEecCCcEEEEEcCCCC
Q 025891          200 SAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       200 ~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++++.  .+|.|++.+.--+|-.+
T Consensus       108 m~~hi--aaMAPgT~iGaa~Pi~~  129 (436)
T COG1030         108 MATHI--AAMAPGTNIGAATPIAG  129 (436)
T ss_pred             HhcCh--hhhCCCCcccccceecC
Confidence            99999  99999999999999854

>PRK10949 protease 4; Provisional

Probab=99.16  E-value=1e-10  Score=117.52  Aligned_cols=91  Identities=27%  Similarity=0.299  Sum_probs=80.5

Q ss_pred             EEEeccccChh-------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC---CCeEEEEccccch
Q 025891          124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAAS  193 (246)
Q Consensus       124 IIfL~G~Idd~-------~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k---~~V~Tvv~G~AAS  193 (246)
                      ||++.|.|.+.       ..+.+.++|.....++..|.|.|+||||||++.+...|++.|+..+   .||++.+.++|||
T Consensus       330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS  409 (618)
T PRK10949        330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS  409 (618)
T ss_pred             EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence            78999999752       2567888888888788899999999999999999999999997664   6899999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEE
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIM  216 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iM  216 (246)
                      +|++|+++||+  +++.|.+.++
T Consensus       410 ggY~iA~aad~--I~a~p~t~tG  430 (618)
T PRK10949        410 GGYWISTPANY--IVASPSTLTG  430 (618)
T ss_pred             HHHHHHHhcCE--EEECCCCcee
Confidence            99999999999  9999988765

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.12  E-value=3.6e-10  Score=98.67  Aligned_cols=92  Identities=25%  Similarity=0.259  Sum_probs=79.6

Q ss_pred             EEEeccccChhH-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhh---hCCCeEEEEccccch
Q 025891          124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH---IRPDVSTVCVGLAAS  193 (246)
Q Consensus       124 IIfL~G~Idd~~-------A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~---~k~~V~Tvv~G~AAS  193 (246)
                      ||.+.|+|.+..       ...+.+.|..+..++..+.|.|.+|||||++.+...|+++|+.   .+.||++++.|.|+|
T Consensus         4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s   83 (211)
T cd07019           4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS   83 (211)
T ss_pred             EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence            688888887643       3678888888888777899999999999999999999887654   567999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEE
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMI  217 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMI  217 (246)
                      +|++|+++||+  +++.|++++..
T Consensus        84 ~gy~la~~aD~--i~a~~~a~~gs  105 (211)
T cd07019          84 GGYWISTPANY--IVANPSTLTGS  105 (211)
T ss_pred             HHHHHHHhCCE--EEEcCCCEEEE
Confidence            99999999999  99999998853

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.88  E-value=8e-09  Score=90.87  Aligned_cols=89  Identities=16%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhh---CCCeEEEEccccchHHHHHHccCCCC
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKG  205 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~---k~~V~Tvv~G~AASaAslIl~AGdkg  205 (246)
                      +..+......++++|..+..++..+.|.|.+|||||.+.+...|++.|+..   +.||++++.| |+|+|++|+++||+ 
T Consensus        24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~-  101 (222)
T cd07018          24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE-  101 (222)
T ss_pred             CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE-
Confidence            344556677889999988887779999999999999999999999999765   4799999997 99999999999999 


Q ss_pred             cEEecCCcEEEEEcC
Q 025891          206 KRYSLPNSRIMIHQP  220 (246)
Q Consensus       206 kR~a~pnS~iMIHqP  220 (246)
                       ++|.|++.+++.-.
T Consensus       102 -I~a~p~~~vg~iGv  115 (222)
T cd07018         102 -IYLNPSGSVELTGL  115 (222)
T ss_pred             -EEECCCceEEeecc
Confidence             99999999998643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=98.28  E-value=3.7e-06  Score=75.51  Aligned_cols=100  Identities=22%  Similarity=0.199  Sum_probs=76.8

Q ss_pred             hccCcE--EEeccccChhHHHHHHHHHHhhhhcCCCCCeE-EEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHH
Q 025891          119 LFQHRI--IRCGGPVEDDMANIIVAQLLYLDAVDPNKDII-MYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMG  195 (246)
Q Consensus       119 L~~~RI--IfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~-L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaA  195 (246)
                      .++.|.  |.+.+++-+..+....+.|.  + ..+..-++ +.+|||||+|..++++-..|+..+.++..--..+|+|++
T Consensus        71 ~~dgr~l~VvVse~~a~~da~sal~~li--r-~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaC  147 (245)
T COG3904          71 TLDGRQLPVVVSEPGANVDAASALGRLI--R-KAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASAC  147 (245)
T ss_pred             hccCceeeEEEcCCCCCccHHHHHHHHH--h-ccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccc
Confidence            455665  44566665544443444442  2 22333444 789999999999999999999999887777778999999


Q ss_pred             HHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          196 AFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       196 slIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .++|++|..  |++.+.+.+.+||+...
T Consensus       148 pl~fagGvr--Rvve~~ayiGVHq~~~~  173 (245)
T COG3904         148 PLMFAGGVR--RVVEDFAYIGVHQITTT  173 (245)
T ss_pred             hhhhhccee--eeecccceeeeeecccc
Confidence            999999998  99999999999999853

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.82  E-value=6.3e-05  Score=75.55  Aligned_cols=84  Identities=12%  Similarity=0.022  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHhhhhcCCCCCeEEEEeC-CCCCHHHHHHHHHHHhhhC---CCeEEEEccccchHHHHHHccCCCCcEEe
Q 025891          134 DMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKRYS  209 (246)
Q Consensus       134 ~~A~~iiaqLl~L~~~d~~k~I~L~INS-PGGsV~aGlaIyD~Ir~~k---~~V~Tvv~G~AASaAslIl~AGdkgkR~a  209 (246)
                      .....++.+|.....++..+.|.|.||+ |||.+.....|+++|+..+   .||+++..+. +|.+++|++++|+  +++
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD~--I~~  152 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFADE--IIL  152 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCCE--EEE
Confidence            4566788999888888889999999996 6778888889999998775   6899987764 7999999999999  999


Q ss_pred             cCCcEEEEEcC
Q 025891          210 LPNSRIMIHQP  220 (246)
Q Consensus       210 ~pnS~iMIHqP  220 (246)
                      .|.+.++++-.
T Consensus       153 ~p~G~v~~~G~  163 (584)
T TIGR00705       153 NPMGSVDLHGF  163 (584)
T ss_pred             CCCceEEeece
Confidence            99999987643

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=97.80  E-value=0.00014  Score=61.12  Aligned_cols=92  Identities=14%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHH-----------------HHHHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----------------AGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~-----------------aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      +|.++.+.+.+.|..++.++..+-|.|.-+    |.|+++.                 ....++..|..++.||.+.+.|
T Consensus        23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G  102 (195)
T cd06558          23 LSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG  102 (195)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            567788888888888876555555555444    4455543                 2244566777888999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .|.+.|+.++++||.  |++.++++|.+.....|.
T Consensus       103 ~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~  135 (195)
T cd06558         103 AALGGGLELALACDI--RIAAEDAKFGLPEVKLGL  135 (195)
T ss_pred             eeecHHHHHHHhCCE--EEecCCCEEechhhhcCC
Confidence            999999999999999  999999999988876553

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK10949 protease 4; Provisional

Probab=97.68  E-value=0.00012  Score=74.19  Aligned_cols=86  Identities=19%  Similarity=0.130  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHH-HHHHHHHhhhC---CCeEEEEccccchHHHHHHccCCCCcEE
Q 025891          133 DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-MAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKRY  208 (246)
Q Consensus       133 d~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aG-laIyD~Ir~~k---~~V~Tvv~G~AASaAslIl~AGdkgkR~  208 (246)
                      +....+++++|.....++..+.|.|.||+|||...+. ..|+++|+..+   .||+++ ...+++.+++|+++||+  ++
T Consensus        94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~  170 (618)
T PRK10949         94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY  170 (618)
T ss_pred             cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence            3445678888888888888999999999999876655 68999998775   588886 55567999999999999  99


Q ss_pred             ecCCcEEEEEcCC
Q 025891          209 SLPNSRIMIHQPL  221 (246)
Q Consensus       209 a~pnS~iMIHqP~  221 (246)
                      +.|.+.+.++-..
T Consensus       171 l~P~G~v~~~G~~  183 (618)
T PRK10949        171 LSPQGVVDLHGFA  183 (618)
T ss_pred             ECCCceEEEeeee
Confidence            9999999877544

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=97.35  E-value=0.0017  Score=57.78  Aligned_cols=91  Identities=15%  Similarity=0.152  Sum_probs=66.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHH--------------HHHHHHHHhhhCCCeEEEEccccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLAA  192 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~a--------------GlaIyD~Ir~~k~~V~Tvv~G~AA  192 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.    .=|.|+++.+              ...+++.|..++.||.+.+.|.|.
T Consensus        29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~  108 (259)
T PRK06688         29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV  108 (259)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence            6778888888888777654434434332    1134444322              234666788889999999999999


Q ss_pred             hHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.|..|+++||-  |++.++++|.+....-|
T Consensus       109 GgG~~lal~cD~--ria~~~a~f~~pe~~~G  137 (259)
T PRK06688        109 GVGVSLALACDL--VYASESAKFSLPFAKLG  137 (259)
T ss_pred             cHHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence            999999999999  99999999988665544

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=97.24  E-value=0.003  Score=57.24  Aligned_cols=92  Identities=17%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-------------------HHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-------------------laIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+.                   ..+++.|..++.||.+.+
T Consensus        41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV  120 (277)
T PRK08258         41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV  120 (277)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            677777778877776664333332222111    344554321                   135667788899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .|.|.+.|.-|+++||-  |++.++++|.+.....|.
T Consensus       121 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl  155 (277)
T PRK08258        121 DGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGL  155 (277)
T ss_pred             CCeeehHHHHHHHhCCE--EEecCCCEEeccccccCc
Confidence            99999999999999999  999999999987776554

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.17  E-value=0.0028  Score=59.80  Aligned_cols=99  Identities=21%  Similarity=0.265  Sum_probs=72.5

Q ss_pred             cCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHH-------HHHHHHHHh---hhCCCeEEEEccc
Q 025891          121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGL  190 (246)
Q Consensus       121 ~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a-------GlaIyD~Ir---~~k~~V~Tvv~G~  190 (246)
                      ++++-...|.++++....... +..+-. .-.-||.-.|||||..+..       +.+|...+.   ..+.|+.+++.|-
T Consensus       122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~-~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe  199 (316)
T TIGR00513       122 KEKLRRNFGMPAPEGYRKALR-LMKMAE-RFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE  199 (316)
T ss_pred             cccccccCCCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence            455555667788866554433 332322 2267999999999987322       334555554   5568999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |+|+|++.+..+|.  ++|.|++.+.+-.|.+.
T Consensus       200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~  230 (316)
T TIGR00513       200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGC  230 (316)
T ss_pred             cccHHHhhhccCCE--EEEecCceEEecCHHHH
Confidence            99999999988988  99999999999988764

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=97.17  E-value=0.0039  Score=55.63  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=67.9

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH------------HHHHHHHHhhhCCC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------GMAIFDTIRHIRPD  182 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a------------GlaIyD~Ir~~k~~  182 (246)
                      +|.|+-|     ++.++.+.+.+.+..++.++..+-|.|.=    =|.|+++.+            ...++..|..++.|
T Consensus        12 ~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP   91 (248)
T PRK06072         12 IVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKI   91 (248)
T ss_pred             EEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCC
Confidence            3455543     67788888888887776543333232221    134455532            12245567778899


Q ss_pred             eEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          183 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       183 V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.+.+.|.|.++|..|+++||-  |++.++++|.+.....|
T Consensus        92 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~G  130 (248)
T PRK06072         92 YISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLG  130 (248)
T ss_pred             EEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcC
Confidence            9999999999999999999999  99999999987655544

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=97.17  E-value=0.004  Score=55.76  Aligned_cols=100  Identities=15%  Similarity=0.220  Sum_probs=70.4

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHHH-----------------HHHHHHH
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTAG-----------------MAIFDTI  176 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~aG-----------------laIyD~I  176 (246)
                      +|.|+.|    ++.++.+.+.+.|..++.++..+-|.|  .+.|      +++.+-                 ..+++.|
T Consensus        16 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl--~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (257)
T PRK06495         16 VVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVL--TGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAI   93 (257)
T ss_pred             EEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEE--ECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHH
Confidence            3556655    677778888888877765443333333  3333      333220                 2245667


Q ss_pred             hhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCC
Q 025891          177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGG  227 (246)
Q Consensus       177 r~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~  227 (246)
                      ..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|..|.
T Consensus        94 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~  142 (257)
T PRK06495         94 RECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGG  142 (257)
T ss_pred             HhCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCcccc
Confidence            7888999999999999999999999999  999999999876666555443

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.16  E-value=0.0032  Score=59.54  Aligned_cols=99  Identities=20%  Similarity=0.284  Sum_probs=70.4

Q ss_pred             cCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHH-------HHHHHHHHh---hhCCCeEEEEccc
Q 025891          121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGL  190 (246)
Q Consensus       121 ~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a-------GlaIyD~Ir---~~k~~V~Tvv~G~  190 (246)
                      ++++-..+|.++++....... +..+-. .-.-||.-.|||||..+..       +.+|...+.   ..+.|+.+++.|-
T Consensus       122 ~e~~~~~~G~~~peg~rKa~R-~m~lA~-~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe  199 (319)
T PRK05724        122 KEKIRRNFGMPRPEGYRKALR-LMKMAE-KFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE  199 (319)
T ss_pred             cccccccCCCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            444445567777765544432 222221 2267999999999966421       234444444   5668999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|+|++.+..+|.  .+|.|++.+.+-.|.+.
T Consensus       200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg~  230 (319)
T PRK05724        200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEGC  230 (319)
T ss_pred             ccHHHHHHHhccCe--eeeecCceEeecCHHHH
Confidence            99999999999998  99999999999888754

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=97.13  E-value=0.0039  Score=55.75  Aligned_cols=95  Identities=18%  Similarity=0.169  Sum_probs=67.0

Q ss_pred             EEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC------CCCCHHHH------------------HHHHHH
Q 025891          125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTAG------------------MAIFDT  175 (246)
Q Consensus       125 IfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS------PGGsV~aG------------------laIyD~  175 (246)
                      |.|+.+     ++.++.+.+.+.|..++.++..+-  |.|.+      .|+++.+.                  ..++..
T Consensus        16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~--vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (260)
T PRK07511         16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRA--VVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRA   93 (260)
T ss_pred             EEECCcccccCCCHHHHHHHHHHHHHhccCCCeEE--EEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence            455555     677777778777776664433332  23333      34443321                  235566


Q ss_pred             HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |..++.||.+.+.|.|.+.|..|+++||-  |++.++++|.+..-.-|
T Consensus        94 l~~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G  139 (260)
T PRK07511         94 IRAFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVG  139 (260)
T ss_pred             HHcCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccC
Confidence            77888999999999999999999999999  99999999987665544

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.09  E-value=0.0033  Score=59.50  Aligned_cols=98  Identities=16%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             CcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHH-------HHHHHHHHH---hhhCCCeEEEEcccc
Q 025891          122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLA  191 (246)
Q Consensus       122 ~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------aGlaIyD~I---r~~k~~V~Tvv~G~A  191 (246)
                      +++-..+|..+++-...... +..+-. .-.-||.-.|||||..+.       .+.+|...+   ...+.|+.+++.|-|
T Consensus       126 e~~~~~~G~~~p~g~rKa~R-lm~lA~-~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeg  203 (322)
T CHL00198        126 ENVLRNFGMPSPGGYRKALR-LMKHAN-KFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEG  203 (322)
T ss_pred             hhhhhcCCCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence            34433456666765544432 222222 226799999999997642       233555544   455789999999999


Q ss_pred             chHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|+|++.++.+|.  ++|.+++.+.+-.|.+.
T Consensus       204 gsGGAlal~~aD~--V~m~e~a~~sVisPEg~  233 (322)
T CHL00198        204 GSGGALGIGIGDS--IMMLEYAVYTVATPEAC  233 (322)
T ss_pred             cHHHHHhhhcCCe--EEEeCCeEEEecCHHHH
Confidence            9999999999998  99999999999999653

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=97.09  E-value=0.004  Score=56.05  Aligned_cols=49  Identities=14%  Similarity=0.195  Sum_probs=43.5

Q ss_pred             HHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       173 yD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++.|..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+....-|
T Consensus       101 ~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G  149 (272)
T PRK06210        101 YHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRG  149 (272)
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcC
Confidence            46677889999999999999999999999999  99999999987766544

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=97.08  E-value=0.0043  Score=55.65  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=44.4

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++..|..++.||.+.+.|.|.++|..|+++||-  |++.++++|.+..+.-|
T Consensus        95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG  144 (266)
T PRK05981         95 FLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIG  144 (266)
T ss_pred             HHHHHHhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcC
Confidence            556778889999999999999999999999999  99999999987776644

>PRK05869 enoyl-CoA hydratase; Validated

Probab=97.07  E-value=0.0057  Score=54.00  Aligned_cols=95  Identities=21%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             EEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCCHHHH---------------HHHHHHHhhh
Q 025891          125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTAG---------------MAIFDTIRHI  179 (246)
Q Consensus       125 IfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP------GGsV~aG---------------laIyD~Ir~~  179 (246)
                      |.++.+    ++.++...+.+.|..++.++..+-|.|  .+.      |+++...               ..+++.|..+
T Consensus        21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (222)
T PRK05869         21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVIL--YGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI   98 (222)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence            445555    677778888888887776544443333  333      3443221               2356678888


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.||.+.+.|.|.++|..|+++||.  |++.++++|.+-...-|
T Consensus        99 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (222)
T PRK05869         99 PKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAG  140 (222)
T ss_pred             CCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccC
Confidence            9999999999999999999999999  99999999887655544

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=97.07  E-value=0.0042  Score=55.78  Aligned_cols=94  Identities=18%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             EEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEE-----EeCCCCCHHH--------------HHHHHHHHhhhCC
Q 025891          125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMY-----LNSPGGSVTA--------------GMAIFDTIRHIRP  181 (246)
Q Consensus       125 IfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~-----INSPGGsV~a--------------GlaIyD~Ir~~k~  181 (246)
                      |.|+-+    ++.++.+.+.+.|..++.++..+-|.|.     .=|.|+++.+              ...++..|..++.
T Consensus        16 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~k   95 (261)
T PRK03580         16 ITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDK   95 (261)
T ss_pred             EEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCC
Confidence            445554    5667777777777766654323323321     1133444432              1234566778899


Q ss_pred             CeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcC
Q 025891          182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQP  220 (246)
Q Consensus       182 ~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP  220 (246)
                      ||.+.+.|.|.++|.-|+++||-  |++.++++|.+=..
T Consensus        96 PvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~  132 (261)
T PRK03580         96 PVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEA  132 (261)
T ss_pred             CEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCccc
Confidence            99999999999999999999999  99999998865433

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=97.02  E-value=0.005  Score=55.31  Aligned_cols=91  Identities=15%  Similarity=0.129  Sum_probs=64.0

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHH---------------HHHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=     =|.|+++.+               ...+++.|..++.||.+.+.|.
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  110 (256)
T PRK06143         31 LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGW  110 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            67788888888887776544333333321     123344322               1235667778899999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.+.|.-|+++||-  |++.++++|.+=....|
T Consensus       111 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  141 (256)
T PRK06143        111 CLGGGLELAAACDL--RIAAHDAQFGMPEVRVG  141 (256)
T ss_pred             EeehhHHHHHhCCE--EEecCCCEEeCCccccC
Confidence            99999999999999  99999998876444433

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=97.01  E-value=0.006  Score=54.51  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe------CCCCCHHHH----------------------HHHHHHHhhhCCC
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTAG----------------------MAIFDTIRHIRPD  182 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN------SPGGsV~aG----------------------laIyD~Ir~~k~~  182 (246)
                      ++.++.+.+.+.|..++.++..+-|.  |.      |.|+++..-                      ..++..|+.++.|
T Consensus        27 l~~~~~~~l~~al~~~~~d~~vr~vv--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp  104 (262)
T PRK07509         27 LDFAMFEELIATIKRLKKDRGIRAVI--LSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP  104 (262)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCCeEEE--EECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence            67788888888887776543333233  33      334444321                      1133456778999


Q ss_pred             eEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          183 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       183 V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.+.+.|.|.++|.-|+++||-  |++.++++|.+.....|
T Consensus       105 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  143 (262)
T PRK07509        105 VIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWG  143 (262)
T ss_pred             EEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccC
Confidence            9999999999999999999999  99999999988765544

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=97.00  E-value=0.0067  Score=54.77  Aligned_cols=89  Identities=16%  Similarity=0.035  Sum_probs=64.6

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+             ...+++.|..++.||.+.+.|.|.+
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G  107 (258)
T PRK06190         28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT  107 (258)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence            677788888888877765433333333211    44555432             1245677888899999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      +|.-|+++||-  |++.++++|.+=...
T Consensus       108 gG~~lalacD~--~ia~~~a~f~~pe~~  133 (258)
T PRK06190        108 GGLELALACDI--LIASERARFADTHAR  133 (258)
T ss_pred             HHHHHHHhCCE--EEEeCCCEEECcccc
Confidence            99999999999  999999998754443

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=97.00  E-value=0.0057  Score=53.86  Aligned_cols=89  Identities=13%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCH---------------HHHHHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSV---------------TAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV---------------~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++.++.+.+.+.|..++.++..+  .|.|.+.|      +++               .....++..|..++.||.+.+.|
T Consensus        22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G   99 (245)
T PF00378_consen   22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG   99 (245)
T ss_dssp             BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence            67888889999998888765444  44444444      443               23345677888889999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.+.|..++++||-  |++.+++.|.+-...-|
T Consensus       100 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G  131 (245)
T PF00378_consen  100 HAVGGGFELALACDF--RIAAEDAKFGFPEVRLG  131 (245)
T ss_dssp             EEETHHHHHHHHSSE--EEEETTTEEETGGGGGT
T ss_pred             cccccccccccccce--EEeecccceeeeecccC
Confidence            999999999999999  99999999766554444

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=97.00  E-value=0.0062  Score=54.62  Aligned_cols=97  Identities=16%  Similarity=0.163  Sum_probs=67.5

Q ss_pred             EEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------HHHHHHHHhhhCCCeE
Q 025891          125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------GMAIFDTIRHIRPDVS  184 (246)
Q Consensus       125 IfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------GlaIyD~Ir~~k~~V~  184 (246)
                      |.++.+    ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+            ...++..|..++.||.
T Consensus        14 itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI   93 (251)
T TIGR03189        14 LRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPIL   93 (251)
T ss_pred             EEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            456655    777888888888877765443333333211    33444432            0134556778889999


Q ss_pred             EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.+.|.|.++|.-|+++||-  |++.++++|.+=...-|
T Consensus        94 aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  130 (251)
T TIGR03189        94 VAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLG  130 (251)
T ss_pred             EEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcC
Confidence            99999999999999999999  99999998877544433

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=96.98  E-value=0.0066  Score=54.31  Aligned_cols=91  Identities=11%  Similarity=0.081  Sum_probs=64.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      ++.++.+.+.+.+..++.++..+-|.|.=    =|.|+++.+             ...+++.|..++.||.+.+.|.|.+
T Consensus        26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  105 (255)
T PRK09674         26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG  105 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence            56777777877777666543333233211    133444432             1235667888899999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +|.-|+++||-  |++.++++|.+-...-|
T Consensus       106 gG~~lalacD~--~ia~~~a~f~~pe~~~G  133 (255)
T PRK09674        106 AGCELALLCDI--VIAGENARFGLPEITLG  133 (255)
T ss_pred             HHHHHHHhCCE--EEecCCCEEeCchhhcC
Confidence            99999999999  99999999987665544

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=96.95  E-value=0.0071  Score=54.32  Aligned_cols=91  Identities=13%  Similarity=0.117  Sum_probs=61.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+                  ...+++.|+.++.||.+.+.
T Consensus        29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  108 (262)
T PRK07468         29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ  108 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            566666777776665554332233333211    22344321                  01256778888999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       109 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G  141 (262)
T PRK07468        109 GQAFGGGVGLISVCDV--AIAVSGARFGLTETRLG  141 (262)
T ss_pred             CEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccC
Confidence            9999999999999999  99999998876554433

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.95  E-value=0.0037  Score=64.66  Aligned_cols=70  Identities=21%  Similarity=0.412  Sum_probs=58.2

Q ss_pred             CCCeEEEEeCCCCCHH-------HHHHHHHHHh---hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          152 NKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       152 ~k~I~L~INSPGGsV~-------aGlaIyD~Ir---~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .-||.-.|||||..+.       .+-+|...+.   ....|+.+++.|-|+|+|++.++.||.  ++|.+++.+.+-.|-
T Consensus       242 gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~--VlMle~A~~sVisPE  319 (762)
T PLN03229        242 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANK--LLMLENAVFYVASPE  319 (762)
T ss_pred             CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCE--EEEecCCeEEecCHH
Confidence            6799999999998752       3445655555   456899999999999999999999999  999999999988887


Q ss_pred             CC
Q 025891          222 GG  223 (246)
Q Consensus       222 ~g  223 (246)
                      +.
T Consensus       320 ga  321 (762)
T PLN03229        320 AC  321 (762)
T ss_pred             HH
Confidence            54

>PLN02600 enoyl-CoA hydratase

Probab=96.95  E-value=0.0067  Score=54.24  Aligned_cols=89  Identities=11%  Similarity=0.097  Sum_probs=62.1

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH---------------HHHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.+..++.++..+-|.|.=.     |.|+++.+               ...+++.|..++.||.+.+.|.
T Consensus        19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~   98 (251)
T PLN02600         19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA   98 (251)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence            677777888877777765443333333210     33444432               1124556777889999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      |.++|.-|+++||-  |++.++++|.+-...
T Consensus        99 a~GgG~~lala~D~--~ia~~~a~f~~pe~~  127 (251)
T PLN02600         99 ALGGGLELALSCDL--RICGEEAVFGLPETG  127 (251)
T ss_pred             ecchhHHHHHhCCE--EEeeCCCEEeCcccc
Confidence            99999999999999  999999999874433

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=96.94  E-value=0.0063  Score=55.13  Aligned_cols=89  Identities=17%  Similarity=0.109  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC------CCCCHHHH--------------------------HHHHHHHhh
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTAG--------------------------MAIFDTIRH  178 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS------PGGsV~aG--------------------------laIyD~Ir~  178 (246)
                      ++.++.+.+.+.|..++.++..+-|  .|-+      -|+++.+-                          ..+++.|..
T Consensus        32 l~~~~~~~l~~al~~~~~d~~vrvv--Vltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  109 (275)
T PLN02664         32 LSLDFFTEFPKALSSLDQNPNVSVI--ILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQ  109 (275)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEE--EEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence            6777788888877777654433322  2232      33444311                          134566788


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++.||.+.+.|.|.++|..|+++||-  |++.++++|.+-...-|
T Consensus       110 ~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  152 (275)
T PLN02664        110 CRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLA  152 (275)
T ss_pred             CCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhC
Confidence            89999999999999999999999999  99999999987554444

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=96.94  E-value=0.0072  Score=54.19  Aligned_cols=91  Identities=14%  Similarity=0.118  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHHH--------------HHHHHHHhhhCCCeEEEEcccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAG--------------MAIFDTIRHIRPDVSTVCVGLA  191 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~aG--------------laIyD~Ir~~k~~V~Tvv~G~A  191 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=     =|.|+++.+-              ..+++.|..++.||.+.+.|.|
T Consensus        26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  105 (256)
T TIGR03210        26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA  105 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence            56677777777777666544333333321     1334554321              2356678888999999999999


Q ss_pred             chHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .++|.-|+++||-  |++.++++|.+=.+.-|
T Consensus       106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  135 (256)
T TIGR03210       106 IGGGNVLVTICDL--TIASEKAQFGQVGPKVG  135 (256)
T ss_pred             ehhhHHHHHhCCE--EEEeCCCEEeccccccc
Confidence            9999999999999  99999999987544433

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=96.93  E-value=0.0078  Score=54.54  Aligned_cols=89  Identities=13%  Similarity=0.066  Sum_probs=60.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH----------------------HHHHHHHhhhCCCeE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------------MAIFDTIRHIRPDVS  184 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG----------------------laIyD~Ir~~k~~V~  184 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=    =|.|+++.+.                      ..+++.|..++.||.
T Consensus        34 l~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  113 (276)
T PRK05864         34 MAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVI  113 (276)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            66777777777777666443233222211    1334444321                      124556778899999


Q ss_pred             EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      +.+.|.|.++|.-|+++||-  |++.++++|.+-...
T Consensus       114 aav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~  148 (276)
T PRK05864        114 AAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGIN  148 (276)
T ss_pred             EEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccc
Confidence            99999999999999999999  999999988754433

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=96.93  E-value=0.006  Score=54.38  Aligned_cols=84  Identities=13%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC------CCCCHHH----------HHHHHHHHhhhCCCeEEEEccccchH
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTA----------GMAIFDTIRHIRPDVSTVCVGLAASM  194 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS------PGGsV~a----------GlaIyD~Ir~~k~~V~Tvv~G~AASa  194 (246)
                      ++.++..++.+.+..++. +..+  .|.|-+      .|+++.+          ...+++.|..++.||.+.+.|.|.++
T Consensus        24 l~~~~~~~l~~al~~~~~-~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg  100 (243)
T PRK07854         24 LNAELCEELREAVRKAVD-ESAR--AIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA  100 (243)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCce--EEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence            788888888888876663 2232  233333      3455431          12356677788999999999999999


Q ss_pred             HHHHHccCCCCcEEecCCcEEEEEc
Q 025891          195 GAFLLSAGTKGKRYSLPNSRIMIHQ  219 (246)
Q Consensus       195 AslIl~AGdkgkR~a~pnS~iMIHq  219 (246)
                      |..|+++||-  |++.++++|.+=.
T Consensus       101 G~~lal~cD~--~ia~~~a~f~~pe  123 (243)
T PRK07854        101 GLQLAMACDL--RVVAPEAYFQFPV  123 (243)
T ss_pred             HHHHHHhCCE--EEEcCCCEEeccc
Confidence            9999999999  9999999987533

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=96.92  E-value=0.0048  Score=55.09  Aligned_cols=91  Identities=13%  Similarity=0.025  Sum_probs=65.1

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH------------HHHHHHHhhhCCCeEEEEccccchH
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAASM  194 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG------------laIyD~Ir~~k~~V~Tvv~G~AASa  194 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+-            ..++..|..++.||.+.+.|.|.++
T Consensus        29 l~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  108 (249)
T PRK07110         29 FSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGG  108 (249)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceech
Confidence            667777888877777665433333333211    344554321            2466778888999999999999999


Q ss_pred             HHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          195 GAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       195 AslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |..|+++||-  |++.++++|.+....-|
T Consensus       109 G~~lal~cD~--~ia~~~a~f~~pe~~~G  135 (249)
T PRK07110        109 GLVLGLYADI--VVLSRESVYTANFMKYG  135 (249)
T ss_pred             HHHHHHhCCE--EEEeCCCEecCchhccC
Confidence            9999999999  99999998876554433

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=96.92  E-value=0.0081  Score=53.61  Aligned_cols=91  Identities=14%  Similarity=0.099  Sum_probs=62.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH--------------HHHHHHHHhhhCCCeEEEEccccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLAA  192 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a--------------GlaIyD~Ir~~k~~V~Tvv~G~AA  192 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=    =|.|+++.+              ...++..|..++.||.+.+.|.|.
T Consensus        30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  109 (251)
T PRK06023         30 ITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAI  109 (251)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCcee
Confidence            56677777777776665433222222210    133344321              124566788889999999999999


Q ss_pred             hHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .+|..|+++||-  |++.++++|.+-....|
T Consensus       110 GgG~~la~acD~--ria~~~a~f~~pe~~~G  138 (251)
T PRK06023        110 GIGTTIHLHCDL--TFASPRSLFRTPFVDLA  138 (251)
T ss_pred             cHHHHHHHhCCE--EEEeCCCEecCcccccC
Confidence            999999999999  99999999987665544

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=96.92  E-value=0.0097  Score=54.57  Aligned_cols=99  Identities=18%  Similarity=0.271  Sum_probs=72.4

Q ss_pred             cCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHH-------HHHHHHHHh---hhCCCeEEEEccc
Q 025891          121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGL  190 (246)
Q Consensus       121 ~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a-------GlaIyD~Ir---~~k~~V~Tvv~G~  190 (246)
                      ++++...+|.++++-...... +..+-. .-.-||.-.+||||..+..       +..|...+.   ..+.|+.+++.|-
T Consensus        69 ~d~~~~~~G~~~~~g~rKa~R-~~~lA~-~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~  146 (256)
T PRK12319         69 QDNLKRNFGQPHPEGYRKALR-LMKQAE-KFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE  146 (256)
T ss_pred             ccceeeeCCCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            445566678888876555543 332322 2257999999999986421       234555544   3467999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|+|++.+..+|.  .+|.|++.+.+-.|.+.
T Consensus       147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~  177 (256)
T PRK12319        147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF  177 (256)
T ss_pred             cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH
Confidence            99999999999998  99999999999888753

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=96.91  E-value=0.008  Score=53.97  Aligned_cols=91  Identities=11%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=    =|.|+++..             ...+++.|..++.||.+.+.|.|.+
T Consensus        32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G  111 (261)
T PRK08138         32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG  111 (261)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence            67777888888887776543333333321    133444432             1235566778889999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +|.-|+++||-  |++.++++|.+=...-|
T Consensus       112 gG~~lalacD~--ria~~~a~f~~pe~~~G  139 (261)
T PRK08138        112 GGCELAMHADI--IVAGESASFGQPEIKVG  139 (261)
T ss_pred             HHHHHHHhCCE--EEecCCCEeeCcccccc
Confidence            99999999999  99999998876444433

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=96.89  E-value=0.0073  Score=55.33  Aligned_cols=50  Identities=20%  Similarity=0.066  Sum_probs=43.9

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +++.|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+.....|
T Consensus       105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  154 (296)
T PRK08260        105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRG  154 (296)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcC
Confidence            456677888999999999999999999999999  99999999988766544

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=96.88  E-value=0.008  Score=53.74  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=63.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC-------CCHHH---------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG-------GsV~a---------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.+..++.++..+  .|.|-+.|       +++.+               ...+++.|..++.||.+.+.
T Consensus        28 l~~~~~~~l~~~~~~~~~d~~v~--~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  105 (260)
T PRK05809         28 LNSETLKELDTVLDDIENDDNVY--AVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN  105 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcE--EEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            67777777877777666433232  23344444       33321               12356678888999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~G  138 (260)
T PRK05809        106 GFALGGGCELSMACDI--RIASEKAKFGQPEVGLG  138 (260)
T ss_pred             CeeecHHHHHHHhCCE--EEeeCCCEEeCcccccC
Confidence            9999999999999999  99999999987555444

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=96.86  E-value=0.0079  Score=53.91  Aligned_cols=89  Identities=15%  Similarity=0.100  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-------CCCHHH---------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-------GGSVTA---------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP-------GGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+-  |.|.+-       |+++..               ...+++.|..++.||.+.+.
T Consensus        26 l~~~~~~~l~~al~~~~~d~~vrv--vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  103 (258)
T PRK09076         26 WTADSLQALKQLVLELNADKDVYA--LVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN  103 (258)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            677777888877777765433332  333333       344322               12245667788999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       104 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  136 (258)
T PRK09076        104 GYAMGGGLECALACDI--RIAEEQAQMALPEASVG  136 (258)
T ss_pred             CEEecHHHHHHHhCCE--EEecCCCEeeCcccccC
Confidence            9999999999999999  99999999877554434

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=96.86  E-value=0.018  Score=51.87  Aligned_cols=90  Identities=13%  Similarity=0.096  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe------CCCCCHHHH--------------HHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTAG--------------MAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN------SPGGsV~aG--------------laIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.+..++.++ .+-|.|.=+      |-|+++...              ..+++.|..++.||.+.+.|.
T Consensus        28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~  106 (261)
T PRK11423         28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS  106 (261)
T ss_pred             CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence            67777888888887766433 433333211      334444321              235667788899999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.++|.-|+++||-  |++.+.++|.+=....|
T Consensus       107 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  137 (261)
T PRK11423        107 VWGGAFELIMSCDL--IIAASTSTFAMTPANLG  137 (261)
T ss_pred             EechHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence            99999999999999  99999999876554433

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=96.82  E-value=0.01  Score=53.09  Aligned_cols=88  Identities=16%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------H-----HHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------G-----MAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------G-----laIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++.+.+.+.|..++.++ .+-|.|.=+    |.|+++.+             .     ..+++.|..++.||.+.+.
T Consensus        23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  101 (256)
T TIGR02280        23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN  101 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            67777888888887776543 443333211    33344321             0     1234567788999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      |.|.++|..|+++||-  |++.+++.|.+-...
T Consensus       102 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~  132 (256)
T TIGR02280       102 GVAAGAGANLALACDI--VLAAESARFIQAFAK  132 (256)
T ss_pred             CeeehHHHHHHHhCCE--EEecCCCEEeChhhh
Confidence            9999999999999999  999999998764444

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=96.78  E-value=0.012  Score=52.86  Aligned_cols=89  Identities=18%  Similarity=0.189  Sum_probs=61.2

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH---------------HHHHHHHHhhhCCCeEEEEcccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGLA  191 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~G~A  191 (246)
                      ++.++.+.+.+.|..++  +..+-|.|.=+    |.|+++.+               ...+++.|..++.||.+.+.|.|
T Consensus        26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  103 (255)
T PRK08150         26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV  103 (255)
T ss_pred             CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence            56667777777776655  22333333211    23444422               12356677788999999999999


Q ss_pred             chHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .++|.-|+++||-  |++.++++|.+=....|
T Consensus       104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  133 (255)
T PRK08150        104 VGGGLELASAAHI--RVADESTYFALPEGQRG  133 (255)
T ss_pred             EcHHHHHHHhCCE--EEEeCCCEEeccccccC
Confidence            9999999999999  99999999876544433

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=96.78  E-value=0.007  Score=59.30  Aligned_cols=90  Identities=16%  Similarity=0.236  Sum_probs=64.9

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHH-------HHHHHHHHH---hhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------aGlaIyD~I---r~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++++-...... +..+-. .-.-||.-+|||||..+.       .+.+|...|   -..+.|+.+++.|-+.|+|++.
T Consensus       200 G~~~peGyRKAlR-~mklAe-kf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla  277 (431)
T PLN03230        200 AMPQPNGYRKALR-FMRHAE-KFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA  277 (431)
T ss_pred             CCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence            5566655444332 222221 226799999999997642       234565555   4556899999999999999999


Q ss_pred             HccCCCCcEEecCCcEEEEEcCCC
Q 025891          199 LSAGTKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       199 l~AGdkgkR~a~pnS~iMIHqP~~  222 (246)
                      +..||.  .+|.+++.+.+-.|.+
T Consensus       278 lg~aD~--VlMle~A~ysVisPEg  299 (431)
T PLN03230        278 IGCGNR--MLMMENAVYYVASPEA  299 (431)
T ss_pred             hhcCCE--EEEecCCEEEecCHHH
Confidence            999998  9999999999888864

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=96.78  E-value=0.01  Score=53.29  Aligned_cols=51  Identities=22%  Similarity=0.171  Sum_probs=44.6

Q ss_pred             HHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       171 aIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .+++.|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  138 (259)
T TIGR01929        88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVG  138 (259)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccc
Confidence            3566788889999999999999999999999999  99999999988666544

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=96.78  E-value=0.0088  Score=53.49  Aligned_cols=89  Identities=15%  Similarity=0.147  Sum_probs=61.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH-------------------HHHHHHHHhhhCCCeEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-------------------GMAIFDTIRHIRPDVSTV  186 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a-------------------GlaIyD~Ir~~k~~V~Tv  186 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+     |-|+++.+                   ...+++.|..++.||.+.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  106 (260)
T PRK05980         27 LNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAA  106 (260)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            677777888877777665443333333211     22344321                   012455677788999999


Q ss_pred             EccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       187 v~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      +.|.|.++|.-|+++||-  |++.++++|.+=...
T Consensus       107 v~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~  139 (260)
T PRK05980        107 VNGLAFGGGCEITEAVHL--AIASERALFAKPEIR  139 (260)
T ss_pred             EcCEEEhhhhHHhHhCCE--EEecCCCEecCcccc
Confidence            999999999999999999  999999988764433

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=96.77  E-value=0.0092  Score=54.44  Aligned_cols=91  Identities=10%  Similarity=0.065  Sum_probs=63.3

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE------eCCCCCHHHH-----------------HHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL------NSPGGSVTAG-----------------MAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I------NSPGGsV~aG-----------------laIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.|..++.++..+-|.|.=      =|.|+++.+-                 ..+++.|..++.+|.+.+
T Consensus        35 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV  114 (278)
T PLN03214         35 MTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAI  114 (278)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            66777777888777776544333333321      1333443220                 114456778889999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.|.++|..|+++||.  |++.++++|.+-....|
T Consensus       115 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lG  148 (278)
T PLN03214        115 RGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALG  148 (278)
T ss_pred             cCcccchHHHHHHhCCE--EEecCCCEecCcHHHhC
Confidence            99999999999999999  99999999887554444

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=96.76  E-value=0.014  Score=52.25  Aligned_cols=50  Identities=16%  Similarity=0.064  Sum_probs=43.0

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus        91 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (262)
T PRK05995         91 MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLG  140 (262)
T ss_pred             HHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccc
Confidence            455677888999999999999999999999999  99999999877555444

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=96.75  E-value=0.0095  Score=53.71  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=43.3

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +++.|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+....-|
T Consensus       101 ~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  150 (272)
T PRK06142        101 AINAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLG  150 (272)
T ss_pred             HHHHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhC
Confidence            455677889999999999999999999999999  99999999876655544

>PLN02921 naphthoate synthase

Probab=96.73  E-value=0.013  Score=54.98  Aligned_cols=91  Identities=15%  Similarity=0.091  Sum_probs=65.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHHH----------------HHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~aG----------------laIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++.++.+.|.+.|..++.++..+-|.|.=     =|.||++..-                ..++..|+.++.||.+.+.|
T Consensus        91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG  170 (327)
T PLN02921         91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG  170 (327)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            67788888888887776543332222211     1344554320                12455777889999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.++|..|+++||-  |++.+++.|.+..+..|
T Consensus       171 ~a~GGG~~LalacD~--riA~~~A~f~~pe~~~G  202 (327)
T PLN02921        171 YAVGGGHILHMVCDL--TIAADNAVFGQTGPKVG  202 (327)
T ss_pred             EEecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence            999999999999999  99999999988777654

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=96.73  E-value=0.014  Score=52.16  Aligned_cols=85  Identities=15%  Similarity=0.126  Sum_probs=59.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHH-------------------HHHHHHHHhhhCCCeEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA-------------------GMAIFDTIRHIRPDVST  185 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~a-------------------GlaIyD~Ir~~k~~V~T  185 (246)
                      ++.++...+.+.|..++.++..+-  |.|.+-|      +++.+                   ...+++.|..++.||.+
T Consensus        26 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  103 (255)
T PRK07260         26 FNIPMCQEILEALRLAEEDPSVRF--LLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM  103 (255)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            566777777777766654332222  2234444      33321                   12345567788999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecCCcEEEEEc
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQ  219 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHq  219 (246)
                      .+.|.|.++|..|+++||-  |++.++++|.+=.
T Consensus       104 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe  135 (255)
T PRK07260        104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQAF  135 (255)
T ss_pred             EecCeeehhhHHHHHhCCE--EEEeCCCEEechH
Confidence            9999999999999999999  9999999987633

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=96.72  E-value=0.014  Score=56.78  Aligned_cols=99  Identities=12%  Similarity=0.004  Sum_probs=71.0

Q ss_pred             cEEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH------------H-------HHHH
Q 025891          123 RIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------M-------AIFD  174 (246)
Q Consensus       123 RIIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG------------l-------aIyD  174 (246)
                      ++|.|+-+     ++.++...+.+.|..++.++..+-|.|.=+    |-||++.+-            .       .+..
T Consensus        53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~  132 (407)
T PLN02851         53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY  132 (407)
T ss_pred             EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            57778777     788899999999988876554433333211    345665321            1       1222


Q ss_pred             HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|..++.||.+.+.|.|.++|.-|+++||.  |++.++++|.+=...-|
T Consensus       133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iG  179 (407)
T PLN02851        133 LQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMG  179 (407)
T ss_pred             HHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccC
Confidence            455678999999999999999999999999  99999988877555544

>PLN02888 enoyl-CoA hydratase

Probab=96.69  E-value=0.015  Score=52.58  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCCHHHH------------HHHHHHHhhhCCCeEEEEccccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAA  192 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP------GGsV~aG------------laIyD~Ir~~k~~V~Tvv~G~AA  192 (246)
                      ++.++...+.+.|..++.++..+-|.|  .+.      |+++.+.            ..++..|..++.||.+.+.|.|.
T Consensus        34 l~~~~~~~l~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~  111 (265)
T PLN02888         34 LTRPMMVELAAAFKRLDEDDSVKVIIL--TGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI  111 (265)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEE--ECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence            677778888888877765443333333  333      3454321            23455677888999999999999


Q ss_pred             hHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      ++|..|+++||-  |++.+++.|.+=...
T Consensus       112 GgG~~lal~cD~--ria~~~a~f~~pe~~  138 (265)
T PLN02888        112 TAGFEIALACDI--LVASRGAKFIDTHAK  138 (265)
T ss_pred             chHHHHHHhCCE--EEecCCCEecCcccc
Confidence            999999999999  999999988764433

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=96.68  E-value=0.013  Score=52.33  Aligned_cols=89  Identities=13%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH----------------HHHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.+..++.++..+-|.|.=    =|.|+++.+                ...++..|..++.||.+.+.|.
T Consensus        25 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~  104 (257)
T PRK07658         25 LSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGA  104 (257)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence            66677777777777666543333333321    133455421                1235667788899999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      |.+.|.-|+++||-  |++.++++|.+-...
T Consensus       105 a~GgG~~lalacD~--ria~~~a~f~~pe~~  133 (257)
T PRK07658        105 ALGGGLELAMSCHI--RFATESAKLGLPELN  133 (257)
T ss_pred             eeeHHHHHHHhCCE--EEecCCCcccCcccc
Confidence            99999999999999  999999988765443

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.68  E-value=0.02  Score=52.03  Aligned_cols=107  Identities=13%  Similarity=0.123  Sum_probs=70.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCC----------HHHHHHHHHHHhhh---CCCeEEEEccccchHHHH
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS----------VTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGs----------V~aGlaIyD~Ir~~---k~~V~Tvv~G~AASaAsl  197 (246)
                      ++-+-+......+...-..+..-||...||+||=.          ..++-.+.+.+...   +.|+.+++.|.+.|.|++
T Consensus        45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l  124 (238)
T TIGR03134        45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL  124 (238)
T ss_pred             CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence            44444444444443321123578999999999954          33333334444444   489999999999998888


Q ss_pred             HHcc-CCCCcEEecCCcEEEEEcCCCC---CCCCHHHHHHHHHHHH
Q 025891          198 LLSA-GTKGKRYSLPNSRIMIHQPLGG---AQGGQSDIDLQVHIMA  239 (246)
Q Consensus       198 Il~A-GdkgkR~a~pnS~iMIHqP~~g---~~G~a~Di~i~A~eL~  239 (246)
                      .+.- +|.  .+|.|++.+..-.|.+.   .+-+.++.+..++++.
T Consensus       125 amg~~ad~--v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~  168 (238)
T TIGR03134       125 AHGLQADR--IIALPGAMVHVMDLESMARVTKRSVEELEALAKSSP  168 (238)
T ss_pred             HHccCcCe--EEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhh
Confidence            8863 666  99999999988877754   2445566666666543

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=96.66  E-value=0.017  Score=52.20  Aligned_cols=91  Identities=12%  Similarity=0.086  Sum_probs=61.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH-----------------HHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-----------------MAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG-----------------laIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++.++...+.+.|..++.++..+-|.|.=    =|.|+++.+.                 ..++..|..++.||.+.+.|
T Consensus        36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  115 (268)
T PRK07327         36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG  115 (268)
T ss_pred             CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence            67777888888887777544333333311    1333443210                 12344566778999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.++|..|+++||-  |++.++++|.+=....|
T Consensus       116 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  147 (268)
T PRK07327        116 PAVGAGLVAALLADI--SIAAKDARIIDGHTRLG  147 (268)
T ss_pred             eeeehhhHHHHhCCE--EEecCCCEEeCcccccC
Confidence            999999999999999  99999999875333333

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=96.65  E-value=0.012  Score=52.69  Aligned_cols=50  Identities=18%  Similarity=0.056  Sum_probs=43.4

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +++.|..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus        95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  144 (266)
T PRK09245         95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLG  144 (266)
T ss_pred             HHHHHHcCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccC
Confidence            456777888999999999999999999999999  99999999887555544

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=96.65  E-value=0.017  Score=51.59  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=63.4

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH----------------HHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG----------------laIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=    =|-|+++.+-                ..+++.|..++.||.+.+.|.
T Consensus        25 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~  104 (249)
T PRK07938         25 LPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGF  104 (249)
T ss_pred             CCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence            66677777777776665443333222221    1334554321                124556778899999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG  226 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G  226 (246)
                      |.++|.-|+++||-  |++.++++|.+=...-|..|
T Consensus       105 a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g  138 (249)
T PRK07938        105 CLGGGIGLVGNADV--IVASDDATFGLPEVDRGALG  138 (249)
T ss_pred             EeehHHHHHHhCCE--EEEeCCCEeeCccceecCch
Confidence            99999999999999  99999999876544444433

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=96.64  E-value=0.013  Score=52.28  Aligned_cols=50  Identities=18%  Similarity=0.056  Sum_probs=42.5

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .+..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+....-|
T Consensus        87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G  136 (249)
T PRK05870         87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAADV--RIAGPKALFDARFQKLG  136 (249)
T ss_pred             HHHHHHhCCCCEEEEECCEeEchhHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            345567788999999999999999999999999  99999999986655433

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=96.63  E-value=0.02  Score=51.25  Aligned_cols=88  Identities=15%  Similarity=0.127  Sum_probs=62.0

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH-------------------HHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG-------------------laIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++.+.+.+.+..++ ++..+-|.|.=    =|.|+++.+-                   ..++..|..++.||.+.+
T Consensus        28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  106 (262)
T PRK08140         28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV  106 (262)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            56777778888877776 44333333321    1334444220                   114556778899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .|.|.++|..|+++||-  |++.++++|.+-...
T Consensus       107 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  138 (262)
T PRK08140        107 NGVAAGAGANLALACDI--VLAARSASFIQAFVK  138 (262)
T ss_pred             CCeeehhHHHHHHhCCE--EEecCCCEEeccccc
Confidence            99999999999999999  999999998754443

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=96.61  E-value=0.016  Score=52.63  Aligned_cols=89  Identities=11%  Similarity=0.064  Sum_probs=62.2

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH-------------------HHHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------------GMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a-------------------GlaIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.+                   ...+++.|..++.||.+.+
T Consensus        32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  111 (275)
T PRK09120         32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV  111 (275)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67777788887777776543333333321    123344322                   1124556778889999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .|.|.++|.-|+++||-  |++.++++|.+=...
T Consensus       112 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~  143 (275)
T PRK09120        112 NGWCFGGGFSPLVACDL--AIAADEAQFGLSEIN  143 (275)
T ss_pred             cCEEechhHHHHHhCCE--EEEeCCcEecCCccc
Confidence            99999999999999999  999999998764433

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=96.60  E-value=0.019  Score=51.41  Aligned_cols=89  Identities=11%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC-------CCHHH---------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG-------GsV~a---------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.+..++.++..+  .|.|.+.|       +++.+               ...+++.|..++.||.+.+.
T Consensus        28 l~~~~~~~l~~al~~~~~d~~v~--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  105 (260)
T PRK07657         28 LSLALLEELQNILTQINEEANVR--VVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN  105 (260)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeE--EEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            67788888888887776543333  23334434       33321               12345667788899999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       106 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  138 (260)
T PRK07657        106 GIALGGGLELALACDF--RIAAESASLGLTETTLA  138 (260)
T ss_pred             CEeechHHHHHHhCCE--EEeeCCCEEcCchhccC
Confidence            9999999999999999  99999999887655544

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=96.59  E-value=0.018  Score=52.85  Aligned_cols=45  Identities=11%  Similarity=0.073  Sum_probs=40.0

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEE
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIH  218 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIH  218 (246)
                      ++..|..++.||.+.+.|.|.+.|.-|+++||-  |++.+++.|.+=
T Consensus       119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~p  163 (302)
T PRK08272        119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYP  163 (302)
T ss_pred             HHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCc
Confidence            455677888999999999999999999999999  999999988653

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=96.58  E-value=0.022  Score=51.50  Aligned_cols=89  Identities=17%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-------CCCHHH-----------------HHHHHHHHhhhCCCeEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-------GGSVTA-----------------GMAIFDTIRHIRPDVSTV  186 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP-------GGsV~a-----------------GlaIyD~Ir~~k~~V~Tv  186 (246)
                      ++.++.+.+.+.|..++.++..+-|.  |.+.       |+++..                 ...+++.|..++.||.+.
T Consensus        35 l~~~~~~~l~~~l~~~~~d~~v~~vV--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa  112 (269)
T PRK06127         35 MSLDMWEALPQALAAAEDDDAIRVVV--LTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIAC  112 (269)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEE--EEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67777788888777766543333222  3333       344321                 012446677888999999


Q ss_pred             EccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       187 v~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.|.|.++|.-|+++||-  |++.++++|.+.....|
T Consensus       113 v~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~G  147 (269)
T PRK06127        113 IRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLG  147 (269)
T ss_pred             ECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhC
Confidence            999999999999999999  99999999988766644

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=96.55  E-value=0.017  Score=52.14  Aligned_cols=89  Identities=10%  Similarity=0.075  Sum_probs=60.6

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |.|+++..                  ...++..|..++.||.+.+.
T Consensus        30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~  109 (265)
T PRK05674         30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ  109 (265)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            666777777777766665433333333111    33444331                  01345566778899999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      |.|.++|.-|+++||-  |++.++++|.+=...
T Consensus       110 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~  140 (265)
T PRK05674        110 GAAFGGALGLISCCDM--AIGADDAQFCLSEVR  140 (265)
T ss_pred             CEEEechhhHhhhcCE--EEEeCCCEEeCcccc
Confidence            9999999999999999  999999998874433

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=96.54  E-value=0.021  Score=51.73  Aligned_cols=91  Identities=16%  Similarity=0.095  Sum_probs=61.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHH----------------HHHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=     =|.|+++.+                ...+++.|..++.||.+.+.|
T Consensus        37 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  116 (273)
T PRK07396         37 FRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAG  116 (273)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECC
Confidence            56666677777766665443333233321     123343321                112456778889999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.++|.-|+++||-  |++.++++|.+=.+.-|
T Consensus       117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  148 (273)
T PRK07396        117 YAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVG  148 (273)
T ss_pred             EEehHHHHHHHhCCE--EEeeCCcEEeccccccc
Confidence            999999999999999  99999999887555544

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=96.52  E-value=0.017  Score=53.01  Aligned_cols=52  Identities=10%  Similarity=-0.047  Sum_probs=43.1

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQ  225 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~  225 (246)
                      ++..|+.++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+=....|..
T Consensus       110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~  161 (288)
T PRK08290        110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIP  161 (288)
T ss_pred             HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcC
Confidence            345677889999999999999999999999999  9999999987644444443

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=96.51  E-value=0.017  Score=52.04  Aligned_cols=87  Identities=13%  Similarity=0.120  Sum_probs=59.0

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH----------------HHHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+     |.|+++.+                ...+++.|..++.||.+.+.|
T Consensus        32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G  111 (262)
T PRK06144         32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG  111 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            466667777777766654332333322211     22344321                122455677888999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEc
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQ  219 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHq  219 (246)
                      .|.++|.-|+++||-  |++.++++|.+=.
T Consensus       112 ~a~GgG~~lala~D~--~ia~~~a~f~~pe  139 (262)
T PRK06144        112 ACVGGGAAIAAACDL--RIATPSARFGFPI  139 (262)
T ss_pred             eeeehHHHHHHhCCE--EEecCCCEeechh
Confidence            999999999999999  9999999987643

>PRK08321 naphthoate synthase; Validated

Probab=96.50  E-value=0.024  Score=52.35  Aligned_cols=89  Identities=15%  Similarity=0.076  Sum_probs=63.1

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEE-----------EeCCCCCHHH-----------------------HH---HHH
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMY-----------LNSPGGSVTA-----------------------GM---AIF  173 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~-----------INSPGGsV~a-----------------------Gl---aIy  173 (246)
                      ++.++...+.+.|..++.++..+-|.|.           .=|.||++..                       ..   .++
T Consensus        49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (302)
T PRK08321         49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ  128 (302)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence            6777777787777777654434444442           2255666432                       01   234


Q ss_pred             HHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEec-CCcEEEEEcCC
Q 025891          174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL-PNSRIMIHQPL  221 (246)
Q Consensus       174 D~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~-pnS~iMIHqP~  221 (246)
                      +.|..++.||.+.+.|.|.++|.-|+++||-  |++. ++++|.+=...
T Consensus       129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~  175 (302)
T PRK08321        129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDAD  175 (302)
T ss_pred             HHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccc
Confidence            5677788999999999999999999999999  9998 68998764444

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=96.50  E-value=0.027  Score=50.49  Aligned_cols=91  Identities=14%  Similarity=0.050  Sum_probs=61.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHHHH----------HH--HHHHhhhCCCeEEEEccccch
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAGM----------AI--FDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~aGl----------aI--yD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+     |.|+++.+..          .+  +..+..++.||.+.+.|.|.+
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G  107 (259)
T PRK06494         28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG  107 (259)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence            667777888888777765443333333221     2245543211          11  122345678999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.-|+++||-  |++.++++|.+-...-|
T Consensus       108 gG~~lalacD~--ria~~~a~f~~pe~~~G  135 (259)
T PRK06494        108 GGFELALACDL--IVAAENATFALPEPRVG  135 (259)
T ss_pred             HHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence            99999999999  99999999988665544

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=96.49  E-value=0.024  Score=50.68  Aligned_cols=89  Identities=16%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+    |-|+++.+             ...++..|..++.||.+.+.|.|.+
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~G  107 (257)
T PRK05862         28 LNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALG  107 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeH
Confidence            566777777777766665433333333211    22343321             1234567788899999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      +|.-|+++||.  |++.++++|.+=...
T Consensus       108 gG~~lalacD~--~ia~~~a~f~~pe~~  133 (257)
T PRK05862        108 GGCELAMMCDI--IIAADTAKFGQPEIK  133 (257)
T ss_pred             HHHHHHHHCCE--EEEeCCCEEeCchhc
Confidence            99999999999  999999988764443

>PRK08139 enoyl-CoA hydratase; Validated

Probab=96.49  E-value=0.028  Score=50.76  Aligned_cols=90  Identities=16%  Similarity=0.175  Sum_probs=62.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCCHHH----------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTA----------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP------GGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++.+.+.+.|..++.++..+-|  .|.+.      |+++.+                ...+++.|..++.||.+.+.
T Consensus        35 l~~~~~~~l~~~l~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  112 (266)
T PRK08139         35 LSEAMLAALQAALDAIAADPSVRVV--VLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVH  112 (266)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeeEE--EEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            5677777777777766643322222  22333      344321                01245567788999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      |.|.+.|.-|+++||-  |++.++++|.+-....|.
T Consensus       113 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  146 (266)
T PRK08139        113 GIATAAGCQLVASCDL--AVAADTARFAVPGVNIGL  146 (266)
T ss_pred             ceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCC
Confidence            9999999999999999  999999998776555443

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=96.48  E-value=0.0035  Score=52.24  Aligned_cols=42  Identities=26%  Similarity=0.244  Sum_probs=32.4

Q ss_pred             HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEc
Q 025891          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQ  219 (246)
Q Consensus       176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHq  219 (246)
                      .+..+.||++++.|+|+|++.+|+++|++  +++.|.+.++..-
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiG   43 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIG   43 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeC
Confidence            35677899999999999999999999999  9999999988543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=96.45  E-value=0.023  Score=54.63  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH-------------------HHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------------AIFDT  175 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl-------------------aIyD~  175 (246)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=+    |-||++.+-.                   .+...
T Consensus        21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~  100 (381)
T PLN02988         21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYV  100 (381)
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence            4556655     677888889999888765443333333211    3356654311                   12235


Q ss_pred             HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |..++.||.+.+.|.|.++|.-|+++||.  |++.++++|.+=...-|
T Consensus       101 i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iG  146 (381)
T PLN02988        101 MATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALG  146 (381)
T ss_pred             HHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcC
Confidence            67788999999999999999999999999  99999998875444433

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=96.41  E-value=0.02  Score=53.98  Aligned_cols=48  Identities=10%  Similarity=0.128  Sum_probs=41.5

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      ++..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+=...
T Consensus        92 ~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~  139 (342)
T PRK05617         92 LNALIARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETG  139 (342)
T ss_pred             HHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccc
Confidence            445677888999999999999999999999999  999999998765443

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=96.40  E-value=0.027  Score=50.27  Aligned_cols=47  Identities=17%  Similarity=0.184  Sum_probs=41.4

Q ss_pred             HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|+.++.||.+.+.|.|.+.|..|+++||-  |++.++++|.+....-|
T Consensus        87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G  133 (255)
T PRK06563         87 VGRRLSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRG  133 (255)
T ss_pred             HHhcCCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcC
Confidence            467788999999999999999999999999  99999999987665544

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=96.37  E-value=0.048  Score=48.67  Aligned_cols=91  Identities=10%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH-----------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a-----------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++.+.|.+.+..++.++....+.|.=.     |.|+++..                 ...+++.|..++.||.+.+.
T Consensus        23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~  102 (239)
T PLN02267         23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT  102 (239)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            677777777777776664332222333212     23444321                 11245557778899999999


Q ss_pred             cccchHHHHHHccCCCCcEEecC-CcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLP-NSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~p-nS~iMIHqP~~g  223 (246)
                      |.|.++|..|+++||-  |++.+ .++|.+-.-..|
T Consensus       103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~G  136 (239)
T PLN02267        103 GHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIG  136 (239)
T ss_pred             CcchHHHHHHHHHCCE--EEecCCCCeEeccccccC
Confidence            9999999999999999  99985 567765444433

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=96.35  E-value=0.016  Score=53.36  Aligned_cols=48  Identities=10%  Similarity=-0.065  Sum_probs=42.6

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .+..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...
T Consensus       104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~  151 (298)
T PRK12478        104 KFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSR  151 (298)
T ss_pred             HHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccc
Confidence            345677889999999999999999999999999  999999999876655

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=96.32  E-value=0.028  Score=50.31  Aligned_cols=48  Identities=17%  Similarity=0.131  Sum_probs=41.0

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      +++.|..++.||.+.+.|.|.++|.-|+++||-  |++.+.++|.+=...
T Consensus        93 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  140 (260)
T PRK07827         93 LLRAIVELPKPVIAAIDGHVRAGGFGLVGACDI--VVAGPESTFALTEAR  140 (260)
T ss_pred             HHHHHHhCCCCEEEEEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccc
Confidence            455667778999999999999999999999999  999999988764433

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=96.31  E-value=0.03  Score=53.87  Aligned_cols=91  Identities=13%  Similarity=0.058  Sum_probs=63.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHH------------------HHHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA------------------GMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.+..++.++..+-|.|.=     =|-|+++.+                  ...+++.|..++.||.+.+
T Consensus        52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV  131 (360)
T TIGR03200        52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV  131 (360)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67778888888887776543232222211     122333321                  1235567888899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.|.++|.-|+++||.  |++.++++|.+-...-|
T Consensus       132 nG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlG  165 (360)
T TIGR03200       132 NGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHG  165 (360)
T ss_pred             CCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence            99999999999999999  99999999987655544

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=96.29  E-value=0.033  Score=54.02  Aligned_cols=98  Identities=11%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH-------------------HHHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDT  175 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG-------------------laIyD~  175 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=    =|-||++.+-                   ..+...
T Consensus        49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~  128 (401)
T PLN02157         49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYL  128 (401)
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence            4555555     67788888888887776544333333321    1446665421                   012234


Q ss_pred             HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |..++.||.+.+.|.|.++|.-|+++||.  |++.++++|.+=...-|
T Consensus       129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iG  174 (401)
T PLN02157        129 LGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIG  174 (401)
T ss_pred             HHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcC
Confidence            77889999999999999999999999999  99999998876555444

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=96.24  E-value=0.049  Score=47.90  Aligned_cols=87  Identities=21%  Similarity=0.272  Sum_probs=59.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHH--------------HHHHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVT--------------AGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~--------------aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.|..++  +.. .+ |.|...|      +++.              ....++..|..++.||.+.+.|.
T Consensus        26 l~~~~~~~l~~~l~~~~--~~~-~v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~  101 (229)
T PRK06213         26 LSPAMIDALNAALDQAE--DDR-AV-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH  101 (229)
T ss_pred             CCHHHHHHHHHHHHHhh--ccC-cE-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence            66777777777776655  212 23 3333333      3322              12334556777889999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCC-cEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPN-SRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pn-S~iMIHqP~~g  223 (246)
                      |.+.|..|+++||-  |++.++ ++|.+-....|
T Consensus       102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~G  133 (229)
T PRK06213        102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIG  133 (229)
T ss_pred             eeHHHHHHHHhCCe--eeEecCCcEEECchhhhC
Confidence            99999999999999  999999 88876444433

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=96.21  E-value=0.039  Score=49.49  Aligned_cols=88  Identities=15%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHHH----------------HHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTAG----------------MAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~aG----------------laIyD~Ir~~k~~V~Tvv~  188 (246)
                      +|.++.+.+.+.|..++ ++..+  .|.|.+.|      +++.+-                ..++..|..++.||.+.+.
T Consensus        30 l~~~~~~~l~~~l~~~~-d~~vr--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~  106 (260)
T PRK07659         30 LDEPMLKELLQALKEVA-ESSAH--IVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIH  106 (260)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCee--EEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            66677777777776663 22222  23333333      444321                1234456677889999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||-  |++.++++|.+....-|
T Consensus       107 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  139 (260)
T PRK07659        107 GPAAGLGLSIALTADY--VIADISAKLAMNFIGIG  139 (260)
T ss_pred             CceecHHHHHHHhCCE--EEEcCCCEEcCchhhcC
Confidence            9999999999999999  99999999887665544

>PRK08788 enoyl-CoA hydratase; Validated

Probab=96.20  E-value=0.025  Score=52.23  Aligned_cols=44  Identities=9%  Similarity=-0.124  Sum_probs=37.3

Q ss_pred             hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       178 ~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+=...-|
T Consensus       119 ~~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lG  162 (287)
T PRK08788        119 GAGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFN  162 (287)
T ss_pred             CCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhC
Confidence            467889999999999999999999999  99999998876443333

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=96.18  E-value=0.022  Score=50.80  Aligned_cols=91  Identities=14%  Similarity=0.106  Sum_probs=67.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH----------------HHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG----------------laIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++...+.+.|..++.++..+-|.|.=    =|-|+++..-                ..+...|+.++.||.+.+.|.
T Consensus        29 l~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  108 (257)
T COG1024          29 LNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGY  108 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcce
Confidence            67788888888888777653333222221    1334555431                125678888899999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |..+|.-|+++||-  |++.++++|.+....-|
T Consensus       109 a~GgG~eLal~~D~--ria~~~a~f~~pe~~iG  139 (257)
T COG1024         109 ALGGGLELALACDI--RIAAEDAKFGLPEVNLG  139 (257)
T ss_pred             EeechhhhhhcCCe--EEecCCcEecCcccccc
Confidence            99999999999999  99999999998877754

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=96.16  E-value=0.039  Score=49.49  Aligned_cols=51  Identities=10%  Similarity=0.005  Sum_probs=43.8

Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      ++..|..++.||.+.|.|.|.+.|..|+++||-  |++.++++|.+....-|.
T Consensus        88 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl  138 (255)
T PRK07112         88 LWHRLATGPYVTIAHVRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGL  138 (255)
T ss_pred             HHHHHHcCCCCEEEEEecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhcc
Confidence            455677788999999999999999999999999  999999999886655443

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=96.13  E-value=0.053  Score=48.51  Aligned_cols=91  Identities=20%  Similarity=0.047  Sum_probs=60.4

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHHH----------HHHHHH-hhhCCCeEEEEccccchHH
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM----------AIFDTI-RHIRPDVSTVCVGLAASMG  195 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aGl----------aIyD~I-r~~k~~V~Tvv~G~AASaA  195 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.    .=|.|+++.+-.          .+...+ ..++.||.+.+.|.|.++|
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG  106 (254)
T PRK08252         27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG  106 (254)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence            6777888888888777654433333331    113445543210          111111 3567899999999999999


Q ss_pred             HHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          196 AFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       196 slIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .-|+++||-  |++.++++|.+=...-|
T Consensus       107 ~~lalacD~--~ia~~~a~f~~pe~~~G  132 (254)
T PRK08252        107 FELALACDL--IVAARDAKFGLPEVKRG  132 (254)
T ss_pred             HHHHHhCCE--EEEeCCCEEeCchhhcC
Confidence            999999999  99999999876444333

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=96.07  E-value=0.038  Score=52.88  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=67.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC------CCCCHHHH----------H-------HHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTAG----------M-------AIFDT  175 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS------PGGsV~aG----------l-------aIyD~  175 (246)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|  .|.+      -||++.+-          .       .+...
T Consensus        23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvv--Vl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (379)
T PLN02874         23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELI--IIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYH  100 (379)
T ss_pred             EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEE--EEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            4566665     7778888888888877754333322  2333      34554321          0       11234


Q ss_pred             HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+=....|
T Consensus       101 i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iG  146 (379)
T PLN02874        101 IHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVG  146 (379)
T ss_pred             HHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccC
Confidence            66778999999999999999999999999  99999999887555544

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=95.82  E-value=0.08  Score=47.50  Aligned_cols=91  Identities=16%  Similarity=0.135  Sum_probs=60.3

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH----------------HH--HHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM----------------AI--FDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl----------------aI--yD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+-.                .+  +..+..++.||.+.+.
T Consensus        29 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~  108 (263)
T PRK07799         29 LSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVE  108 (263)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEEEC
Confidence            667777888887777765443332322111    2234443210                01  1123567889999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       109 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  141 (263)
T PRK07799        109 GPAIAGGTEILQGTDI--RVAGESAKFGISEAKWS  141 (263)
T ss_pred             CeEeccHHHHHHhCCE--EEecCCCEecCcccccC
Confidence            9999999999999999  99999999877555544

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=95.80  E-value=0.081  Score=47.46  Aligned_cols=88  Identities=15%  Similarity=0.074  Sum_probs=58.3

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHHH-------H------HHHHHhhhCCCeEEEEccccch
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAGM-------A------IFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aGl-------a------IyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      ++.++...+.+.|..++.++..+-|.|.=    =|.|+++.+-.       .      ....+..++.||.+.+.|.|.+
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G  106 (254)
T PRK08259         27 VDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVA  106 (254)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEh
Confidence            66777788888877776544333233321    13445543210       0      0111235678999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQP  220 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP  220 (246)
                      +|.-|+++||-  |++.++++|.+-..
T Consensus       107 gG~~lalacD~--~ia~~~a~f~~pe~  131 (254)
T PRK08259        107 GGLELALWCDL--RVAEEDAVFGVFCR  131 (254)
T ss_pred             HHHHHHHhCCE--EEecCCCEecCccc
Confidence            99999999999  99999998876443

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=95.62  E-value=0.084  Score=54.50  Aligned_cols=91  Identities=16%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+                  +..+++.|..++.||.+.+.
T Consensus        31 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~  110 (714)
T TIGR02437        31 FDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAIN  110 (714)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            567777888888777765443333333211    22344321                  23466778888999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.+.|.-|+++||.  |++.++++|.+=...-|
T Consensus       111 G~alGGGleLalacD~--ria~~~a~fglPEv~lG  143 (714)
T TIGR02437       111 GIALGGGCECVLATDF--RIADDTAKIGLPETKLG  143 (714)
T ss_pred             CeeecHHHHHHHhCCE--EEEeCCCEEecchhhcC
Confidence            9999999999999999  99999999987554433

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=95.47  E-value=0.12  Score=48.06  Aligned_cols=93  Identities=18%  Similarity=0.149  Sum_probs=67.9

Q ss_pred             EeccccChhHHHHHHHHHHhhhhc----CCCCCeEEEEeCCCCCHHHHH-------HHHHHHhhhC--CCeEEEEccc--
Q 025891          126 RCGGPVEDDMANIIVAQLLYLDAV----DPNKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL--  190 (246)
Q Consensus       126 fL~G~Idd~~A~~iiaqLl~L~~~----d~~k~I~L~INSPGGsV~aGl-------aIyD~Ir~~k--~~V~Tvv~G~--  190 (246)
                      |.+|.+.+...+.+...+. +..+    ...-++.+.+.|.|+-+.++.       .|+..+...+  .|+.+++.|-  
T Consensus        70 ~~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~g  148 (274)
T TIGR03133        70 FQGGSVGEVHGAKIVGALR-LAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVG  148 (274)
T ss_pred             ccCcCCCHHHHHHHHHHHH-HHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            4567777766666655443 2222    112489999999999987755       2444444444  6899999999  


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      |++.++++.+.||.  .+|.+++++.+--|.
T Consensus       149 c~GG~a~~a~l~D~--vim~~~a~i~~aGP~  177 (274)
T TIGR03133       149 CFGGMGIAAGLCSY--LIMTEEGRLGLSGPE  177 (274)
T ss_pred             cchHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence            88999999999999  999999999987773

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=95.34  E-value=0.057  Score=50.55  Aligned_cols=91  Identities=12%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-------------HHHHHHHhhhCCCeEEEEccccch
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------MAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-------------laIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      ++..+..++.+++..++.++..+-|+|+=-    +-|.+..+.             +.-++.+.+++.||.+.+.|.|..
T Consensus        61 l~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Alg  140 (290)
T KOG1680|consen   61 LCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALG  140 (290)
T ss_pred             ccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeec
Confidence            677788889999988888776655555411    223333222             224667777889999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.-|++.||-  |+|.++|.|+.-++..|
T Consensus       141 GG~ELalmCDi--rva~~~Akfg~~~~~~G  168 (290)
T KOG1680|consen  141 GGLELALMCDI--RVAGEGAKFGFFEIRMG  168 (290)
T ss_pred             cchhhhhhcce--EeccCCCeecccccccC
Confidence            99999999999  99999999999888765

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=95.30  E-value=0.097  Score=52.78  Aligned_cols=85  Identities=14%  Similarity=0.087  Sum_probs=57.5

Q ss_pred             cChhHHHHHHHHHHhhh-hcCCCCCeEEEEe-----CCCCCHHHH-------------------HHHHHHHhhhCCCeEE
Q 025891          131 VEDDMANIIVAQLLYLD-AVDPNKDIIMYLN-----SPGGSVTAG-------------------MAIFDTIRHIRPDVST  185 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~-~~d~~k~I~L~IN-----SPGGsV~aG-------------------laIyD~Ir~~k~~V~T  185 (246)
                      ++.++.+.+.+.|..++ .++..+-|.|.-.     |.|+++.+.                   ..+.+.|+.++.||.+
T Consensus        45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA  124 (546)
T TIGR03222        45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA  124 (546)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            56667777777777666 3222233333221     445554321                   1244566788999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecCC--cEEEE
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMI  217 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~pn--S~iMI  217 (246)
                      .+.|.|.++|.-|+++||-  |++.++  ++|.+
T Consensus       125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~  156 (546)
T TIGR03222       125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSL  156 (546)
T ss_pred             EECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence            9999999999999999999  999986  56554

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.30  E-value=0.13  Score=51.32  Aligned_cols=91  Identities=19%  Similarity=0.297  Sum_probs=69.0

Q ss_pred             ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC----------CHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG----------sV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl  197 (246)
                      +|.++.+.++.+..-+..-+.  -.-||...+||||=          -+..+..+++.+.....|..+++.|.++++|++
T Consensus       328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~  405 (512)
T TIGR01117       328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL  405 (512)
T ss_pred             cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence            466777777766544432222  36799999999995          355666677777777889999999999998777


Q ss_pred             HHcc----CCCCcEEecCCcEEEEEcCCC
Q 025891          198 LLSA----GTKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       198 Il~A----GdkgkR~a~pnS~iMIHqP~~  222 (246)
                      .+++    +|.  .++.|++++.+-.|.+
T Consensus       406 am~~~~~~~d~--~~a~p~a~~~v~~pe~  432 (512)
T TIGR01117       406 AMCSKHLGADQ--VYAWPTAEIAVMGPAG  432 (512)
T ss_pred             HhccccCCCCE--EEEcCCCeEeecCHHH
Confidence            7654    555  8999999999988875

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=95.29  E-value=0.12  Score=53.20  Aligned_cols=90  Identities=14%  Similarity=0.215  Sum_probs=62.5

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe------CCCCCHHH----------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN------SPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+-|.| +.      |-|+++.+                ...++..|..++.||.+.+.
T Consensus        26 l~~~~~~eL~~~l~~~~~d~~vr~VVl-~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVn  104 (699)
T TIGR02440        26 LKAEFADQVSEILSQLKRDKSIRGLVL-VSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIH  104 (699)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            677777788887777765432222222 22      33445432                12356678888999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCC--cEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pn--S~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||.  |++.++  ++|.+-...-|
T Consensus       105 G~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lG  139 (699)
T TIGR02440       105 GACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLG  139 (699)
T ss_pred             CEeecHHHHHHHhCCE--EEEcCCCCcEEechhhccc
Confidence            9999999999999999  999987  56665554433

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=95.24  E-value=0.085  Score=53.16  Aligned_cols=85  Identities=14%  Similarity=0.078  Sum_probs=57.7

Q ss_pred             cChhHHHHHHHHHHhhh-hcCCCCCeEEEEe-----CCCCCHHHH-------------------HHHHHHHhhhCCCeEE
Q 025891          131 VEDDMANIIVAQLLYLD-AVDPNKDIIMYLN-----SPGGSVTAG-------------------MAIFDTIRHIRPDVST  185 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~-~~d~~k~I~L~IN-----SPGGsV~aG-------------------laIyD~Ir~~k~~V~T  185 (246)
                      ++.++...+.+.|..++ .++..+-|.|.=+     |.|+++..-                   ..+.+.|+.++.||.+
T Consensus        49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA  128 (550)
T PRK08184         49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA  128 (550)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            56667777777777666 3332333333221     344543321                   0144567778999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecCC--cEEEE
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMI  217 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~pn--S~iMI  217 (246)
                      .+.|.|.++|..|+++||.  |++.++  ++|.+
T Consensus       129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~  160 (550)
T PRK08184        129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSL  160 (550)
T ss_pred             EECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence            9999999999999999999  999987  66655

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.00  E-value=0.11  Score=53.45  Aligned_cols=91  Identities=19%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++.+.+.+.+..++.++..+-|.|.=+    |-|+++.+                  ...+++.|..++.||.+.+.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~  110 (715)
T PRK11730         31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN  110 (715)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            566677777777766654332222222111    23344422                  12245667788899999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||-  |++.++++|.+=...-|
T Consensus       111 G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lG  143 (715)
T PRK11730        111 GYALGGGCECVLATDY--RVASPDARIGLPETKLG  143 (715)
T ss_pred             CEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcC
Confidence            9999999999999999  99999999887554444

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=94.94  E-value=0.16  Score=47.77  Aligned_cols=93  Identities=16%  Similarity=0.158  Sum_probs=68.8

Q ss_pred             EeccccChhHHHHHHHHHHhhhhcCC----CCCeEEEEeCCCCCHHHHH-------HHHHHHhhhC--CCeEEEEccc--
Q 025891          126 RCGGPVEDDMANIIVAQLLYLDAVDP----NKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL--  190 (246)
Q Consensus       126 fL~G~Idd~~A~~iiaqLl~L~~~d~----~k~I~L~INSPGGsV~aGl-------aIyD~Ir~~k--~~V~Tvv~G~--  190 (246)
                      |++|.+.+...+.+...+. +..+..    .-++.+.+.|.|+-..++.       .|+..+...+  .|+.+++.|-  
T Consensus        79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g  157 (301)
T PRK07189         79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG  157 (301)
T ss_pred             ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence            4577788777777765443 332222    2689999999999876544       3444444444  6899999998  


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      |++.++++++.||.  .+|.+++++.+--|.
T Consensus       158 c~GG~a~~a~l~D~--iIm~~~a~iglaGP~  186 (301)
T PRK07189        158 CFGGMGIAAALCSY--LIVSEEGRLGLSGPE  186 (301)
T ss_pred             CcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence            99999999999999  999999999987763

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=94.92  E-value=0.062  Score=53.08  Aligned_cols=93  Identities=22%  Similarity=0.316  Sum_probs=67.0

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++.+.+.....-+...+..  .=||...+|+||          |.+..+-.+.+++...+.|+.|++.|.+.++|.+.
T Consensus       308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a  385 (493)
T PF01039_consen  308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA  385 (493)
T ss_dssp             GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence            567777766665444434442  459999999999          66788899999999999999999999999998888


Q ss_pred             HccCCCC--cEEecCCcEEEEEcCCCC
Q 025891          199 LSAGTKG--KRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       199 l~AGdkg--kR~a~pnS~iMIHqP~~g  223 (246)
                      +++...+  ..++.|++++.+-.|.+.
T Consensus       386 m~~~~~~~~~~~Awp~a~~~vm~~e~a  412 (493)
T PF01039_consen  386 MCGRGYGPDFVFAWPTAEIGVMGPEGA  412 (493)
T ss_dssp             TTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred             hcccccchhhhhhhhcceeeecChhhh
Confidence            8876221  288999999998777653

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.82  E-value=0.24  Score=51.00  Aligned_cols=89  Identities=19%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC-------CCCCHHH----------------HHHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-------PGGSVTA----------------GMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS-------PGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++.+.+.+.|..++.++..+-|  .|-+       -|+++.+                ...+++.|..++.||.+.+
T Consensus        31 l~~~~~~~L~~~l~~~~~d~~vr~v--Vl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV  108 (708)
T PRK11154         31 LKAEFAEQVRAILKQLREDKELKGV--VFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAI  108 (708)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEE--EEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            5677777787777777653322222  2323       3344321                1235678888899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCc--EEEEEcCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNS--RIMIHQPLGG  223 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS--~iMIHqP~~g  223 (246)
                      .|.|.++|.-|+++||-  |++.+++  +|.+....-|
T Consensus       109 ~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lG  144 (708)
T PRK11154        109 HGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLG  144 (708)
T ss_pred             CCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCC
Confidence            99999999999999999  9999975  6666554433

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=93.95  E-value=0.12  Score=48.82  Aligned_cols=88  Identities=20%  Similarity=0.348  Sum_probs=67.1

Q ss_pred             CCCeEEEEeCCCCCH-------HHHHHHHHHHh---hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          152 NKDIIMYLNSPGGSV-------TAGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       152 ~k~I~L~INSPGGsV-------~aGlaIyD~Ir---~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .-||..+|++||-..       -.+.+|...|.   .++.||.++|.|.-.|.|++-+.-||+  .+|++||++-+-.|.
T Consensus       150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE  227 (317)
T COG0825         150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE  227 (317)
T ss_pred             CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence            679999999999653       34566755444   457899999999999999999999999  789999999999998


Q ss_pred             CCC---CCC-------HHHHHHHHHHHHHH
Q 025891          222 GGA---QGG-------QSDIDLQVHIMAYF  241 (246)
Q Consensus       222 ~g~---~G~-------a~Di~i~A~eL~k~  241 (246)
                      +-+   +-+       ++.|+++|..|.++
T Consensus       228 G~AsILWkD~~ka~eAAe~mkita~dLk~l  257 (317)
T COG0825         228 GCASILWKDASKAKEAAEAMKITAHDLKEL  257 (317)
T ss_pred             hhhhhhhcChhhhHHHHHHcCCCHHHHHhC
Confidence            642   332       34455555555543

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=93.88  E-value=0.3  Score=50.72  Aligned_cols=88  Identities=11%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHH----------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA----------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~a----------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+. .|.+...|      +++.+                ...+++.|..++.||.+.+.
T Consensus        38 l~~~~~~~L~~al~~~~~d~~vr~-vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~  116 (737)
T TIGR02441        38 LSKELFAEFKEVMNELWTNEAIKS-AVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS  116 (737)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCCEE-EEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            556677777777776664332221 23334333      44321                23467778888999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCc--EEEEEcCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNS--RIMIHQPL  221 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS--~iMIHqP~  221 (246)
                      |.|.++|.-|+++||.  |++.+++  +|.+....
T Consensus       117 G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~  149 (737)
T TIGR02441       117 GSCLGGGLELALACHY--RIATKDRKTLLGLPEVM  149 (737)
T ss_pred             CEeecHHHHHHHhCCE--EEEcCCCCCeEecchhh
Confidence            9999999999999999  9999984  66655443

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=93.36  E-value=0.66  Score=43.42  Aligned_cols=91  Identities=13%  Similarity=0.150  Sum_probs=65.1

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHH-------HHHHh---hhCCCeEEEEccccchHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI-------FDTIR---HIRPDVSTVCVGLAASMGA  196 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaI-------yD~Ir---~~k~~V~Tvv~G~AASaAs  196 (246)
                      ++|.++...++.+...+..-.. . .-|+.+...|+|....+|...       ...+.   ....|..+++.|-+++.++
T Consensus       133 ~gGS~g~~~~eKi~r~~e~A~~-~-~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a  210 (292)
T PRK05654        133 MGGSMGSVVGEKIVRAVERAIE-E-KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS  210 (292)
T ss_pred             ccCCccHHHHHHHHHHHHHHHH-c-CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence            4667777778877655543322 2 568999999999988777632       22332   2347889999999988877


Q ss_pred             HHHcc-CCCCcEEecCCcEEEEEcCC
Q 025891          197 FLLSA-GTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       197 lIl~A-GdkgkR~a~pnS~iMIHqP~  221 (246)
                      ..+.. +|-  ++|.|++.+.+--|.
T Consensus       211 as~a~~~D~--iia~p~A~ig~aGpr  234 (292)
T PRK05654        211 ASFAMLGDI--IIAEPKALIGFAGPR  234 (292)
T ss_pred             HHHHHcCCE--EEEecCcEEEecCHH
Confidence            76554 777  899999999987664

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=93.15  E-value=0.59  Score=43.65  Aligned_cols=91  Identities=13%  Similarity=0.118  Sum_probs=65.3

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHH-------HHh---hhCCCeEEEEccccchHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFD-------TIR---HIRPDVSTVCVGLAASMGA  196 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD-------~Ir---~~k~~V~Tvv~G~AASaAs  196 (246)
                      ++|.++....+.+...+..-..  ..-|+.+.++|+|.-..+|.....       .+.   ....|..+++.|-+++.++
T Consensus       132 ~gGSmg~~~geKi~r~~e~A~~--~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a  209 (285)
T TIGR00515       132 MGGSMGSVVGEKFVRAIEKALE--DNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS  209 (285)
T ss_pred             cCCCccHHHHHHHHHHHHHHHH--cCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence            3566777777777655543322  256999999999988877763332       222   2347899999999988877


Q ss_pred             HHHc-cCCCCcEEecCCcEEEEEcCC
Q 025891          197 FLLS-AGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       197 lIl~-AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      ..++ .+|-  ++|.|++.+.+--|.
T Consensus       210 as~a~~~D~--iia~p~A~ig~aGpr  233 (285)
T TIGR00515       210 ASFAMLGDL--NIAEPKALIGFAGPR  233 (285)
T ss_pred             HHHHhCCCE--EEEECCeEEEcCCHH
Confidence            7764 7887  899999999987663

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=91.46  E-value=1.9  Score=43.89  Aligned_cols=92  Identities=17%  Similarity=0.154  Sum_probs=65.4

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC----------CHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG----------sV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++.+.++... ++..|-.. -.=||...+|+||-          .+..+..+..++.....|+.|++.|.|+++|++.
T Consensus       380 g~l~~~~a~Kaa-rfi~lc~~-~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a  457 (569)
T PLN02820        380 GILFTESALKGA-HFIELCAQ-RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG  457 (569)
T ss_pred             CccCHHHHHHHH-HHHHHHHh-cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence            447766655553 33333222 25699999999994          4455566777777888999999999999999999


Q ss_pred             HccC--CCCcEEecCCcEEEEEcCCC
Q 025891          199 LSAG--TKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       199 l~AG--dkgkR~a~pnS~iMIHqP~~  222 (246)
                      +++.  .....++.|++.+.+-.|.+
T Consensus       458 M~g~~~~~d~~~awp~A~i~vmg~e~  483 (569)
T PLN02820        458 MCGRAYSPNFLFMWPNARIGVMGGAQ  483 (569)
T ss_pred             hcCcCCCCCEEEECCCCeEEecCHHH
Confidence            8843  22237889999998877654

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=91.02  E-value=3.1  Score=42.17  Aligned_cols=90  Identities=16%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC--------CHH-----------HH----HHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG--------SVT-----------AG----MAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG--------sV~-----------aG----laIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.+..++.+|  .+|.+.|=+-+|        ++.           +.    ..+++.|..++.||.+.+
T Consensus       295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav  372 (546)
T TIGR03222       295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI  372 (546)
T ss_pred             CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            56677777877877776432  345544433333        321           11    125667888899999999


Q ss_pred             -ccccchHH-HHHHccCCCCcEEe-------cCCcEEEEEcCCCCC
Q 025891          188 -VGLAASMG-AFLLSAGTKGKRYS-------LPNSRIMIHQPLGGA  224 (246)
Q Consensus       188 -~G~AASaA-slIl~AGdkgkR~a-------~pnS~iMIHqP~~g~  224 (246)
                       .|.|..+| .-|+++||-  |++       .++++|.+-...-|.
T Consensus       373 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl  416 (546)
T TIGR03222       373 EPGSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGL  416 (546)
T ss_pred             CCCeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCcccccc
Confidence             79999999 999999999  999       899999877766553

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=90.36  E-value=2.6  Score=38.61  Aligned_cols=68  Identities=22%  Similarity=0.304  Sum_probs=48.9

Q ss_pred             hcCCCCCeEEEEeCCC---CCHHHHHHHHHHH----------hhhCCCeEEEEccccchHHHHHHc-cCCCCcEEecCCc
Q 025891          148 AVDPNKDIIMYLNSPG---GSVTAGMAIFDTI----------RHIRPDVSTVCVGLAASMGAFLLS-AGTKGKRYSLPNS  213 (246)
Q Consensus       148 ~~d~~k~I~L~INSPG---GsV~aGlaIyD~I----------r~~k~~V~Tvv~G~AASaAslIl~-AGdkgkR~a~pnS  213 (246)
                      ...+..+|.+.|++||   |.-.+.+.|+..|          |....||.+.+.|.|.|.|.+-.- .+++  .+++|  
T Consensus        60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r--l~AL~--  135 (234)
T PF06833_consen   60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR--LIALP--  135 (234)
T ss_pred             hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc--hhcCC--
Confidence            3456889999999999   5556666665444          455679999999999997755432 2555  78899  


Q ss_pred             EEEEEc
Q 025891          214 RIMIHQ  219 (246)
Q Consensus       214 ~iMIHq  219 (246)
                      -.|||-
T Consensus       136 ga~i~v  141 (234)
T PF06833_consen  136 GAMIHV  141 (234)
T ss_pred             CCeeec
Confidence            445664

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=88.62  E-value=3.4  Score=42.12  Aligned_cols=90  Identities=16%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHH---H------H-HHHHHHHhh-h--CCCeEEEEccccch
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT---A------G-MAIFDTIRH-I--RPDVSTVCVGLAAS  193 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~---a------G-laIyD~Ir~-~--k~~V~Tvv~G~AAS  193 (246)
                      .+|.+++...+.+...+. +-.+. .-||...++|+|+.+.   +      + -.|+..+.. .  ..|..+++.|-|++
T Consensus       141 ~GGs~g~~~~~Ki~r~~e-lA~~~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~g  218 (569)
T PLN02820        141 KGGTYYPITVKKHLRAQE-IAAQC-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTA  218 (569)
T ss_pred             cCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence            577788877777764443 33222 5689999999998762   1      1 135544333 3  36899999999999


Q ss_pred             HHHHHHccCCCCcEEec-CCcEEEEEcC
Q 025891          194 MGAFLLSAGTKGKRYSL-PNSRIMIHQP  220 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~-pnS~iMIHqP  220 (246)
                      .|+++...++.  .+|. +++.+.+--|
T Consensus       219 GgAy~~a~~D~--vim~~~~a~i~~aGP  244 (569)
T PLN02820        219 GGAYVPAMADE--SVIVKGNGTIFLAGP  244 (569)
T ss_pred             HHHHHHHhCCc--eEEecCCcEEEecCH
Confidence            99999988887  6665 5788888766

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=88.40  E-value=2  Score=43.54  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=42.5

Q ss_pred             HHHHHhhhCCCeEEEEc-cccchHH-HHHHccCCCCcEEec-------CCcEEEEEcCCCC
Q 025891          172 IFDTIRHIRPDVSTVCV-GLAASMG-AFLLSAGTKGKRYSL-------PNSRIMIHQPLGG  223 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~-G~AASaA-slIl~AGdkgkR~a~-------pnS~iMIHqP~~g  223 (246)
                      ++..|..++.||.+.+. |.|..+| .-|+++||-  |++.       ++++|.+-...-|
T Consensus       361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~G  419 (550)
T PRK08184        361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFG  419 (550)
T ss_pred             HHHHHHhCCCCEEEEECCCceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECcccccc
Confidence            45567777899999997 9999999 999999999  9999       9999887666654

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=85.87  E-value=5.3  Score=37.74  Aligned_cols=91  Identities=12%  Similarity=0.098  Sum_probs=62.4

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH----HHHH---Hh----hhCCCeEEEEccccchHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA----IFDT---IR----HIRPDVSTVCVGLAASMG  195 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla----IyD~---Ir----~~k~~V~Tvv~G~AASaA  195 (246)
                      ++|.+.....+.+...+. +..+ ..-|+.+...|.|+-+.+|..    +...   +.    .-..|..+++.|-+++.+
T Consensus       145 ~gGSmG~v~geKi~ra~e-~A~~-~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~  222 (296)
T CHL00174        145 MGGSMGSVVGEKITRLIE-YATN-ESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGV  222 (296)
T ss_pred             cccCcCHHHHHHHHHHHH-HHHH-cCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHH
Confidence            445555556666655443 2222 246899999999988777662    1111   22    234688999999888888


Q ss_pred             HHHHcc-CCCCcEEecCCcEEEEEcCC
Q 025891          196 AFLLSA-GTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       196 slIl~A-GdkgkR~a~pnS~iMIHqP~  221 (246)
                      +..++. ||-  .++.|++.+.+--|.
T Consensus       223 aas~a~l~Di--iiae~~A~IgfAGPr  247 (296)
T CHL00174        223 TASFGMLGDI--IIAEPNAYIAFAGKR  247 (296)
T ss_pred             HHHHHHcccE--EEEeCCeEEEeeCHH
Confidence            888665 988  889999999987774

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=85.23  E-value=5  Score=40.26  Aligned_cols=92  Identities=18%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             EeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH-------HHHHHhhh--CCCeEEEEccccchHHH
Q 025891          126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-------IFDTIRHI--RPDVSTVCVGLAASMGA  196 (246)
Q Consensus       126 fL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla-------IyD~Ir~~--k~~V~Tvv~G~AASaAs  196 (246)
                      |++|.+.....+.+...+. +..+. .-|+...++|.|+.+.++..       |+-.+...  ..|+.+++.|-|...++
T Consensus        93 ~~gGS~g~~~~~K~~r~~e-~A~~~-~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a  170 (512)
T TIGR01117        93 VMGGSLGEMHAAKIVKIMD-LAMKM-GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV  170 (512)
T ss_pred             ccccCCCHHHHHHHHHHHH-HHHHc-CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence            3567777777777764443 33223 46899999999998755432       33222222  35889999999999999


Q ss_pred             HHHccCCCCcEEecCC-cEEEEEcCC
Q 025891          197 FLLSAGTKGKRYSLPN-SRIMIHQPL  221 (246)
Q Consensus       197 lIl~AGdkgkR~a~pn-S~iMIHqP~  221 (246)
                      +.++.||.  ++|.++ +.+.+--|.
T Consensus       171 ~~~al~D~--vim~~~~a~i~~aGP~  194 (512)
T TIGR01117       171 YSPALTDF--IYMVDNTSQMFITGPQ  194 (512)
T ss_pred             HHHHhcCc--eEEeccceEEEecChH
Confidence            99999998  999996 467776553

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.02  E-value=1.7  Score=37.32  Aligned_cols=44  Identities=20%  Similarity=0.486  Sum_probs=31.6

Q ss_pred             EEEeccccChhHHHHHHHHHHh-hhhcCCCCCeEEEEeCCCCCHH
Q 025891          124 IIRCGGPVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGSVT  167 (246)
Q Consensus       124 IIfL~G~Idd~~A~~iiaqLl~-L~~~d~~k~I~L~INSPGGsV~  167 (246)
                      ++-+.|.|+..-++.+.+++-. |....+.+.+.|++-||||-|.
T Consensus       102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh  146 (155)
T PF08496_consen  102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVH  146 (155)
T ss_pred             EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceee
Confidence            4557899987655555544443 3445677999999999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=80.84  E-value=0.48  Score=43.89  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=47.7

Q ss_pred             HHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCC
Q 025891          170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQ  225 (246)
Q Consensus       170 laIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~  225 (246)
                      ..-|..|.+++.||.+-+.|-|.++|.=|..|||-  ||+.+.+.|-+.+--.|..
T Consensus       116 Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvgla  169 (292)
T KOG1681|consen  116 QDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVGLA  169 (292)
T ss_pred             HHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeeehh
Confidence            34477888889999999999999999999999999  9999999999998876643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		1e-42
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		2e-42
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		2e-42
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		2e-42
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		2e-42
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		2e-42
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		2e-42
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		2e-42
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		2e-42
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		2e-42
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		4e-42
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		3e-41
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		8e-41
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		1e-33
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		1e-33
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		2e-33
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		2e-33
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		2e-33
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		4e-30
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		3e-29
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		3e-27
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		2e-12
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		7e-12

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 105/129 (81%), Gaps = 1/129 (0%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG 
Sbjct: 18  RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 77
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG  ++
Sbjct: 78  AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATE 137
Query: 231 IDLQV-HIM 238
           I++   HI+
Sbjct: 138 IEIAANHIL 146

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 103/123 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15  RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS +MIHQPLGGAQG  ++
Sbjct: 75  AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATE 134
Query: 231 IDL 233
           I++
Sbjct: 135 IEI 137

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 103/123 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 16  RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS +MIHQPLGGAQG  ++
Sbjct: 76  AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATE 135
Query: 231 IDL 233
           I++
Sbjct: 136 IEI 138

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 101/121 (83%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct: 32  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 91
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG  +DI++
Sbjct: 92  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEI 151
Query: 234 Q 234
Sbjct: 152 H 152

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 101/121 (83%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG  +DI++
Sbjct: 78  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEI 137
Query: 234 Q 234
Sbjct: 138 H 138

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 103/123 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15  RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS +MIHQPLGGAQG  ++
Sbjct: 75  AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATE 134
Query: 231 IDL 233
           I++
Sbjct: 135 IEI 137

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 101/121 (83%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG  +DI++
Sbjct: 78  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEI 137
Query: 234 Q 234
Sbjct: 138 H 138

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 105/129 (81%), Gaps = 1/129 (0%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG 
Sbjct: 16  RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG  ++
Sbjct: 76  AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATE 135
Query: 231 IDLQV-HIM 238
           I++   HI+
Sbjct: 136 IEIAANHIL 144

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 101/121 (83%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG  +DI++
Sbjct: 78  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEI 137
Query: 234 Q 234
Sbjct: 138 H 138

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 103/123 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15  RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS +MIHQPLGGAQG  ++
Sbjct: 75  AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATE 134
Query: 231 IDL 233
           I++
Sbjct: 135 IEI 137

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score =  167 bits (424), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 105/129 (81%), Gaps = 1/129 (0%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG 
Sbjct: 16  RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DTI+HI+PDV T+C+G+AA+MG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG  ++
Sbjct: 76  AIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATE 135
Query: 231 IDLQV-HIM 238
           I++   HI+
Sbjct: 136 IEIAANHIL 144

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 100/123 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RI+   G + D +A+ IVAQLL+L+A DP KDI +Y+NSPGG +T+G+
Sbjct: 17  RSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGL 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           +I+DT+  IRPDVST+C+G AASMGAFLLS G KGKR+SLP+SRIMIHQPLGGAQG  SD
Sbjct: 77  SIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASD 136
Query: 231 IDL 233
           I++
Sbjct: 137 IEI 139

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 100/123 (81%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RI+   G + D +A+ IVAQLL+L+A DP KDI +Y+NSPGG +T+G+
Sbjct: 17  RSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGL 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           +I+DT+  IRPDVST+C+G AA+MGAFLLS G KGKR+SLP+SRIMIHQPLGGAQG  SD
Sbjct: 77  SIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASD 136
Query: 231 IDL 233
           I++
Sbjct: 137 IEI 139

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 92/126 (73%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 19  SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 78
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT+     D++T  +G+AASMG FLL+AGTKGKRY+LP++RI++HQPLGG  G  +DI +
Sbjct: 79  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAI 138
Query: 234 QVHIMA 239
           Q    A
Sbjct: 139 QAEQFA 144

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 94/124 (75%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RI+   GP++D +A++++AQLL+L +    K I MY+NSPGG VTAG+
Sbjct: 71  RAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGL 130
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT+++I   + T CVG AASMG+ LL+AGT G R+SLPNSRIMIHQP GGA+G  +D
Sbjct: 131 AIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATD 190
Query: 231 IDLQ 234
           I +Q
Sbjct: 191 IAIQ 194

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 92/126 (73%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 19  SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 78
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT+     D++T  +G+AASMG FLL+AGTKGKRY+LP++RI++HQPLGG  G  +DI +
Sbjct: 79  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAI 138
Query: 234 QVHIMA 239
           Q    A
Sbjct: 139 QAEQFA 144

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 92/126 (73%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 20  SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 79
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT+     D++T  +G+AASMG FLL+AGTKGKRY+LP++RI++HQPLGG  G  +DI +
Sbjct: 80  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAI 139
Query: 234 QVHIMA 239
           Q    A
Sbjct: 140 QAEQFA 145

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
Query: 92  IPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDP 151
           +PT  +   GG        R  ++ S+L + RI+   G V D  AN+++AQLL+L++ DP
Sbjct: 7   VPTVIEKTAGGE-------RAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDP 59
Query: 152 NKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLP 211
           +KDI  Y+NSPGG VTAG  ++DT + I+PDVST+C+GLAAS G+ LL+ G KGKRYSLP
Sbjct: 60  DKDIYFYINSPGGXVTAGXGVYDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLP 119
Query: 212 NSRIMIHQPLGGAQGGQSDIDLQ 234
           +S+I IHQPLGG +G  SDI++ 
Sbjct: 120 SSQIXIHQPLGGFRGQASDIEIH 142

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 78/110 (70%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   GPVED+ AN ++AQLL+LDA D  KDI +Y+N+PGGSV+AG+
Sbjct: 34  RSYDIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGL 93
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQP 220
           AI DT   I+ DV T+  G AAS G  + S+G KGKR+ LPN+   IHQP
Sbjct: 94  AIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQP 143

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Query: 119 LFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH 178
            F+ RII     +    A+ +++QLLYLD ++ N DI +Y+NSPGGS+  G+AI D   +
Sbjct: 36  FFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAILDIFNY 94
Query: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIM 238
           I+ D+ T+  GL ASM + +L++G KGKR SLPN RIMIHQPLG A G   DI++Q   +
Sbjct: 95  IKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEI 154
Query: 239 AYFLTLAF 246
            Y   L +
Sbjct: 155 LYLKKLLY 162

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 92/126 (73%), Gaps = 2/126 (1%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + R+I   G VED  AN+ +AQ L+L++ +PNKDI +Y+NSPGG+VT+  
Sbjct: 17  RAYDIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPGGAVTSAX 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT + ++PDV T+C+G AAS GA LL+ G KGKR+ LP+S + IHQ LGG QG  +D
Sbjct: 77  AIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQGQGTD 136
Query: 231 IDLQVH 236
           I  Q+H
Sbjct: 137 I--QIH 140

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG---------- 163
           N+ S L   RII    P+   ++  I++QLLYL+     K I +Y+NS G          
Sbjct: 34  NIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINL 93
Query: 164 GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223
             +T  ++I D I +I  DV T C+G A  +   L S+G KG R+SL NS   ++Q    
Sbjct: 94  NGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSI 153
Query: 224 AQGGQ-SDIDLQ 234
               Q ++I++Q
Sbjct: 154 IPFNQATNIEIQ 165

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSV 166
           S L   RII    P+   ++  I++QLLYL+     K I +Y+NS G            +
Sbjct: 23  SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI 82
Query: 167 TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG 226
           T  ++I D I +I  DV T C+G A  +   L S+G KG R+SL NS   ++Q       
Sbjct: 83  TDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPF 142
Query: 227 GQ-SDIDLQ 234
            Q ++I++Q
Sbjct: 143 NQATNIEIQ 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	1e-81
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	7e-80
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	3e-79
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	3e-79
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	4e-79
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	3e-77
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	1e-75
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	4e-22

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  242 bits (620), Expect = 1e-81
 Identities = 66/123 (53%), Positives = 91/123 (73%)

Query: 112 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA 171
             +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMA
Sbjct: 17  TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA 76

Query: 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDI 231
           I+DT+     D++T  +G+AASMG FLL+AGTKGKRY+LP++RI++HQPLGG  G  +DI
Sbjct: 77  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADI 136

Query: 232 DLQ 234
            +Q
Sbjct: 137 AIQ 139

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  237 bits (608), Expect = 7e-80
 Identities = 73/118 (61%), Positives = 99/118 (83%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DTI
Sbjct: 22  SRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTI 81

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQ 234
           +HI+PDV T+C+G+AASMG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG  ++I++ 
Sbjct: 82  QHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIA 139

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  236 bits (605), Expect = 3e-79
 Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 1/124 (0%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             ++V    F+ RII     +    A+ +++QLLYLD ++   DI +Y+NSPGGS+  G+
Sbjct: 28  MKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGL 86

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI D   +I+ D+ T+  GL ASM + +L++G KGKR SLPN RIMIHQPLG A G   D
Sbjct: 87  AILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQD 146

Query: 231 IDLQ 234
           I++Q
Sbjct: 147 IEIQ 150

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  235 bits (602), Expect = 3e-79
 Identities = 75/118 (63%), Positives = 99/118 (83%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DT+
Sbjct: 21  SRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTM 80

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQ 234
           + I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG  +DI++ 
Sbjct: 81  QFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIH 138

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  235 bits (603), Expect = 4e-79
 Identities = 71/118 (60%), Positives = 96/118 (81%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RI+   G V D  AN+++AQLL+L++ DP+KDI  Y+NSPGG VTAGM ++DT+
Sbjct: 25  SRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTM 84

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQ 234
           + I+PDVST+C+GLAASMG+ LL+ G KGKRYSLP+S+IMIHQPLGG +G  SDI++ 
Sbjct: 85  QFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIH 142

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  231 bits (592), Expect = 3e-77
 Identities = 66/120 (55%), Positives = 90/120 (75%), Gaps = 2/120 (1%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RII   GPVED+MAN ++AQLL+LDA D  KDI +Y+N+PGGSV+AG+AI DT+
Sbjct: 40  SRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTM 99

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ--SDIDLQ 234
             I+ DV T+ +G+AASMG  + S+G KGKR+ LPN+  MIHQP+GG  GG   +D+ + 
Sbjct: 100 NFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIA 159

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  229 bits (587), Expect = 1e-75
 Identities = 66/118 (55%), Positives = 91/118 (77%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RI+   GP++D +A++++AQLL+L +    K I MY+NSPGG VTAG+AI+DT+
Sbjct: 77  SRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTM 136

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQ 234
           ++I   + T CVG AASMG+ LL+AGT G R+SLPNSRIMIHQP GGA+G  +DI +Q
Sbjct: 137 QYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQ 194

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 90.0 bits (223), Expect = 4e-22
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPD 182
            + +  G +     +     +   +  D  + II+ L++PGG   A M I   I+  +  
Sbjct: 11  YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIP 69

Query: 183 VSTVCV---GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMA 239
           V          AAS G ++            P + I   +P+ G     S I+    I  
Sbjct: 70  VIIYVYPPGASAASAGTYIALGSH--LIAMAPGTSIGACRPILGYSQNGSIIEAPPAITN 127

Query: 240 YF 241
           YF
Sbjct: 128 YF 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	100.0
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	100.0
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	100.0
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	100.0
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.81
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.48
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.31
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.17
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	97.82
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	97.82
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	97.8
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	97.76
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	97.75
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	97.73
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	97.62
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	97.61
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	97.59
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	97.58
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	97.57
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	97.56
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	97.52
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	97.51
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	97.47
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	97.43
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	97.41
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	97.4
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	97.39
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	97.36
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	97.32
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	97.31
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	97.3
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	97.29
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	97.26
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	97.25
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	97.25
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	97.22
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	97.21
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	97.21
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	97.19
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	97.19
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	97.19
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	97.18
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	97.14
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	97.13
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	97.13
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	97.11
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	97.1
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.07
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	97.06
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	97.04
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	97.01
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	96.99
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	96.99
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	96.98
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	96.98
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	96.96
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	96.94
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	96.93
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	96.92
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	96.89
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	96.89
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	96.88
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	96.88
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	96.86
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	96.84
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	96.81
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	96.77
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.71
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	96.7
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	96.67
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	96.66
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	96.65
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	96.64
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	96.57
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	96.49
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	96.44
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	96.43
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	96.35
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	96.34
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	96.34
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	96.33
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.31
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.24
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	96.23
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	96.22
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	96.22
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.13
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	96.09
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	96.08
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	96.05
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	96.04
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	95.98
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.81
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.69
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	95.51
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	95.5
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	94.8
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.28
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	94.0
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	93.17
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	88.24
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	86.69
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	85.89
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	81.26

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=6.7e-44  Score=311.74  Aligned_cols=135  Identities=31%  Similarity=0.447  Sum_probs=126.8

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhh
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHI  179 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~  179 (246)
                      ++++|+|++||++|||||+|+||+++++.|++||++|+.+++.++|+|||||||          |+|++|++|||+|+++
T Consensus        16 ~~~~di~s~Ll~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~   95 (205)
T 4gm2_A           16 NLYFQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYI   95 (205)
T ss_dssp             ------CHHHHTTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHhcCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Confidence            456799999999999999999999999999999999999999999999999999          9999999999999999


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC-CCCHHHHHHHHHHHHHHhhh
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA-QGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~-~G~a~Di~i~A~eL~k~~~~  244 (246)
                      +++|+|+|.|+|||||++|++||++|||+++|||++|||||++++ +|+++||+++|+||+++++.
T Consensus        96 ~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~  161 (205)
T 4gm2_A           96 SSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKK  161 (205)
T ss_dssp             SSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999 99999999999999998863

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=3.7e-39  Score=279.97  Aligned_cols=135  Identities=53%  Similarity=0.933  Sum_probs=129.9

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      |+.+|+|++||++|||||+|+|++++++.|+++|++++.+++.++|+|+||||||+|++|++|||+|++++.+|+|+|.|
T Consensus        18 ~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G   97 (201)
T 3p2l_A           18 ERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIG   97 (201)
T ss_dssp             -CCEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             CcccCHHHHhhCCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            45679999999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      +|||+|++|+++|++|||++.|||++|||||+++..|++.|++++++++.++++.
T Consensus        98 ~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~  152 (201)
T 3p2l_A           98 LAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDR  152 (201)
T ss_dssp             EEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             EehhHHHHHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998753

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=6.8e-39  Score=278.69  Aligned_cols=134  Identities=55%  Similarity=0.966  Sum_probs=129.4

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      |+.+|+|++||++|||||+|+||+.+++.|+++|++++.+++.++|.|+||||||+|++|++|||+|++++.+|+|+|.|
T Consensus        15 ~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~I~~~i~~~~~~V~t~~~G   94 (203)
T 3qwd_A           15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIG   94 (203)
T ss_dssp             -CEEEHHHHHHHTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             CcccCHHHHHhcCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCcEEEEee
Confidence            45679999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~  243 (246)
                      +|||+|++|+++|++|+|+|.|||++|||||+++..|+++|+++++++|.++++
T Consensus        95 ~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~  148 (203)
T 3qwd_A           95 MAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTRE  148 (203)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHH
T ss_pred             eehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999875

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=8.1e-38  Score=283.97  Aligned_cols=133  Identities=50%  Similarity=0.819  Sum_probs=128.1

Q ss_pred             hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      +++|+|++|+++|||||+|+|++++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+
T Consensus        71 ~~~di~s~ll~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~t~v~G~  150 (277)
T 1tg6_A           71 RAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQ  150 (277)
T ss_dssp             --CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSCSCEEEEEEEE
T ss_pred             ccccHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEccE
Confidence            47799999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~  243 (246)
                      |||||++|+++|++|||+|.|||++|||||+++..|++.|+++.+++++++++
T Consensus       151 AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~  203 (277)
T 1tg6_A          151 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKK  203 (277)
T ss_dssp             EETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998875

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=100.00  E-value=5.4e-36  Score=256.24  Aligned_cols=134  Identities=57%  Similarity=0.964  Sum_probs=128.7

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      +++.|+|++|+++||||++|+|++.+++.|+++|++++.+++.++|.|+||||||+|+++++|||+|+.++.||+|+|.|
T Consensus        14 ~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g   93 (193)
T 1yg6_A           14 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMG   93 (193)
T ss_dssp             CCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhHHHHHhcCCEEEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEee
Confidence            34679999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~  243 (246)
                      +|||+|++|+++|+++||+|.|+|++|+|||+++..|++.|+++.++++.++++
T Consensus        94 ~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~  147 (193)
T 1yg6_A           94 QAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKG  147 (193)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999889999999999999998765

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=100.00  E-value=9.6e-36  Score=260.29  Aligned_cols=133  Identities=44%  Similarity=0.745  Sum_probs=120.5

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++++|+|++|+++|||||+|+|++.+++.|+++|++++.+++ ++|.|+||||||+|+++++|||+|+.++.||+|+|.|
T Consensus        27 ~~~~d~~~~l~~~riI~l~G~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~~~pV~t~v~g  105 (215)
T 2f6i_A           27 DMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFG  105 (215)
T ss_dssp             CSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cccccHHHHHhCceEEEEccEECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEee
Confidence            567799999999999999999999999999999999998887 9999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~  243 (246)
                      +|||+|++|+++|++|||+|.|+|++|+|||+++..|++.|+++.++++.+++.
T Consensus       106 ~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~  159 (215)
T 2f6i_A          106 LVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKK  159 (215)
T ss_dssp             EECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHH
T ss_pred             EhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988765

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=100.00  E-value=2.4e-35  Score=257.50  Aligned_cols=134  Identities=49%  Similarity=0.821  Sum_probs=117.1

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++++|+|++|+++|||||+|+|++++++.|+++|++++.+++.++|.|+||||||+|++|++|||+|++++.||+|+|.|
T Consensus        33 ~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~~~~pV~t~v~G  112 (218)
T 1y7o_A           33 ERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMG  112 (218)
T ss_dssp             --CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhHHHHhhcCCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            46789999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC--CCCHHHHHHHHHHHHHHhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA--QGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~--~G~a~Di~i~A~eL~k~~~  243 (246)
                      +|||+|++|+++|++|||+|.|+++||+|||+++.  .|++.|+++.++++.++++
T Consensus       113 ~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~~~G~~~di~~~~~~i~~~~~  168 (218)
T 1y7o_A          113 MAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRN  168 (218)
T ss_dssp             EEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHH
T ss_pred             EeHHHHHHHHHcCCcCcEEEcCCcEEEEecccccccCcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887  8999999999999998765

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=100.00  E-value=1.5e-34  Score=250.44  Aligned_cols=134  Identities=50%  Similarity=0.814  Sum_probs=119.9

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      +++.|++++|+++|||||+|+|++.+++.|+++|++++.+++.++|.|+||||||+|++|++|||+|+.++.||+|+|.|
T Consensus        15 ~~~~~~~~~l~~~rii~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g   94 (208)
T 2cby_A           15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMG   94 (208)
T ss_dssp             CHHHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEE
T ss_pred             cchhhHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEECc
Confidence            46889999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~  243 (246)
                      +|||+|++|+++|+++||+|.|+|++|+|+|+++..|++.|+++.++++.++++
T Consensus        95 ~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~  148 (208)
T 2cby_A           95 MAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKK  148 (208)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHH
T ss_pred             EeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999889999999999999998765

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.81  E-value=1.4e-19  Score=159.99  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=95.3

Q ss_pred             cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEE---ccccchHHHHHH
Q 025891          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVC---VGLAASMGAFLL  199 (246)
Q Consensus       123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv---~G~AASaAslIl  199 (246)
                      .+|+|.|.|++.+++.+.++|..++. ++.+.|.|+||||||+++++..||++|+.++.||.++|   .|.|+|+|++|+
T Consensus        11 ~vI~i~g~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~inspGG~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia   89 (230)
T 3viv_A           11 YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIA   89 (230)
T ss_dssp             EEEEEESCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEEBSCEEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHH
T ss_pred             EEEEEeCEECHHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCcCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHH
Confidence            46899999999999999999998875 45899999999999999999999999999999999999   999999999999


Q ss_pred             ccCCCCcEEecCCcEEEEEcCCC--CCCCCH
Q 025891          200 SAGTKGKRYSLPNSRIMIHQPLG--GAQGGQ  228 (246)
Q Consensus       200 ~AGdkgkR~a~pnS~iMIHqP~~--g~~G~a  228 (246)
                      ++||+  |+|.|+++||+|+|..  +..|++
T Consensus        90 ~a~d~--~~a~p~a~ig~~~p~~~~~~~G~~  118 (230)
T 3viv_A           90 LGSHL--IAMAPGTSIGACRPILGYSQNGSI  118 (230)
T ss_dssp             HTSSE--EEECTTCEEECCCEEEEECTTSCE
T ss_pred             HhcCc--eeECCCCEEEeccceecCCCCCCc
Confidence            99998  9999999999999984  456763

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.48  E-value=2.8e-14  Score=140.01  Aligned_cols=104  Identities=17%  Similarity=0.121  Sum_probs=80.8

Q ss_pred             cHhhhhccCcEEEecccc---ChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC-CCHHHHHHHHHHHhhhC---CCeEEE
Q 025891          114 NVLSQLFQHRIIRCGGPV---EDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-GSVTAGMAIFDTIRHIR---PDVSTV  186 (246)
Q Consensus       114 dv~s~L~~~RIIfL~G~I---dd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG-GsV~aGlaIyD~Ir~~k---~~V~Tv  186 (246)
                      |++++|+++   |+++++   ++.+++.|+++|..+..+++.+.|.|+||||| |++.++.+||++|++++   .+|+++
T Consensus        50 ~~~~~ll~~---~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~~~I~~~i~~~k~~gkpvva~  126 (593)
T 3bf0_A           50 QRFSKLSRQ---LLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAV  126 (593)
T ss_dssp             --------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ChHHHHHhh---hccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            567777776   677765   46778999999999988888999999999999 99999999999999995   678888


Q ss_pred             EccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       187 v~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +. .|+|+|++|+++|++  |++.|++.+|+|+|...
T Consensus       127 ~~-~aas~~y~lAsaad~--i~~~P~~~vg~~g~~~~  160 (593)
T 3bf0_A          127 GE-NYSQGQYYLASFANK--IWLSPQGVVDLHGFATN  160 (593)
T ss_dssp             ES-CEEHHHHHHHTTSSE--EEECTTCCEECCCCBCC
T ss_pred             Ec-cchhHHHHHHHhCCE--EEECCCceEEEeccccc
Confidence            65 489999999999988  99999999999999864

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.31  E-value=5.3e-12  Score=110.71  Aligned_cols=93  Identities=22%  Similarity=0.348  Sum_probs=83.4

Q ss_pred             EEEeccccChh------------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhh----CCCeEEEE
Q 025891          124 IIRCGGPVEDD------------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI----RPDVSTVC  187 (246)
Q Consensus       124 IIfL~G~Idd~------------~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~----k~~V~Tvv  187 (246)
                      +|.+.|+|.+.            ..+.+.++|..++.++..+.|.|.+|||||++.++..|+++|+.+    +.||.+.+
T Consensus         7 vi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v   86 (240)
T 3rst_A            7 VLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSM   86 (240)
T ss_dssp             EEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             EEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            57788888764            247788899888887778899999999999999999999999874    67999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEE
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIH  218 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIH  218 (246)
                      .|.|+|+|++|+++||.  |++.|+++++++
T Consensus        87 ~g~a~~gG~~lA~a~D~--i~a~~~a~~g~~  115 (240)
T 3rst_A           87 GSMAASGGYYISTAADK--IFATPETLTGSL  115 (240)
T ss_dssp             EEEEETHHHHHHTTSSE--EEECTTCEEECC
T ss_pred             CCeehHhHHHHHHhCCe--eEECCCCeEecc
Confidence            99999999999999999  999999999988

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.17  E-value=1.9e-11  Score=119.91  Aligned_cols=94  Identities=24%  Similarity=0.251  Sum_probs=83.3

Q ss_pred             EEEeccccChhH-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhh---CCCeEEEEccccch
Q 025891          124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAAS  193 (246)
Q Consensus       124 IIfL~G~Idd~~-------A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~---k~~V~Tvv~G~AAS  193 (246)
                      +|.+.|+|....       .+.|.++|..++.++..+.|.|++|||||++.++..|++.|+.+   +.||++.+.|.|+|
T Consensus       305 vI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~~~~kPVia~v~g~Aas  384 (593)
T 3bf0_A          305 VVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS  384 (593)
T ss_dssp             EEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET
T ss_pred             EEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCChHH
Confidence            688999986543       78899999988887778999999999999999999999988775   47999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEc
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQ  219 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHq  219 (246)
                      +|++|+++||.  |+|.|++.++...
T Consensus       385 gG~~iA~aaD~--iva~p~a~~Gsig  408 (593)
T 3bf0_A          385 GGYWISTPANY--IVANPSTLTGSIG  408 (593)
T ss_dssp             HHHHTTTTCSE--EEECTTCEEECCC
T ss_pred             HHHHHHHhCCE--EEECCCCEeecce
Confidence            99999999999  9999999998653

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=97.82  E-value=0.00014  Score=63.74  Aligned_cols=99  Identities=18%  Similarity=0.173  Sum_probs=80.6

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH-------------HHHHHHhhhCC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------AIFDTIRHIRP  181 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl-------------aIyD~Ir~~k~  181 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.+-.             .+++.|..++.
T Consensus        17 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k   96 (258)
T 2pbp_A           17 IIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKT   96 (258)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHTCCS
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence            4556544     788888999999988887766777887776    8899885411             45678888999


Q ss_pred             CeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       182 ~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      ||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|.
T Consensus        97 PvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl  137 (258)
T 2pbp_A           97 PMIAAVNGLALGGGFELALSCDL--IVASSAAEFGFPEVNLGV  137 (258)
T ss_dssp             CEEEEECSEEETHHHHHHHTSSE--EEEETTCEEECGGGGGTC
T ss_pred             CEEEEEcCEEEhHHHHHHHhCCE--EEEcCCCEEECcccccCC
Confidence            99999999999999999999999  999999999887666543

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=97.82  E-value=0.00011  Score=64.32  Aligned_cols=98  Identities=15%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH--------------HHHHHHHHhhhC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------GMAIFDTIRHIR  180 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a--------------GlaIyD~Ir~~k  180 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+              ...+++.|..++
T Consensus        15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~   94 (257)
T 2ej5_A           15 WLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLE   94 (257)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCC
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCC
Confidence            4556654     778888999999988887766777777766    67888632              234566788889


Q ss_pred             CCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          181 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       181 ~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus        95 kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  135 (257)
T 2ej5_A           95 KPVVAAVNGAAAGAGMSLALACDF--RLLSEKASFAPAFIHVG  135 (257)
T ss_dssp             SCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             CCEEEEECccccchhHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            999999999999999999999999  99999999987666544

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=97.80  E-value=0.00013  Score=64.26  Aligned_cols=98  Identities=14%  Similarity=0.125  Sum_probs=79.8

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHHHH-------------------HHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAGM-------------------AIFD  174 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~aGl-------------------aIyD  174 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=.     |.|+++.+-.                   .++.
T Consensus        16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (263)
T 3lke_A           16 YITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVL   95 (263)
T ss_dssp             EEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence            4666666     788889999999988888776777888777     8888875432                   3566


Q ss_pred             HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus        96 ~l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  142 (263)
T 3lke_A           96 EIFTSPKVTVALINGYAYGGGFNMMLACDR--RIALRRAKFLENFHKMG  142 (263)
T ss_dssp             HHHTCSSEEEEEECSEEETHHHHGGGGSSE--EEEETTCEEECCHHHHT
T ss_pred             HHHhCCCCEEEEECCEeeHHHHHHHHHCCE--EEEcCCCEEeCchHhhC
Confidence            778889999999999999999999999999  99999999987654433

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=97.76  E-value=0.00025  Score=61.81  Aligned_cols=91  Identities=19%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+                  ...+++.|..++.||.+.+.
T Consensus        23 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~  102 (253)
T 1uiy_A           23 LSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVN  102 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            778888899999988887766777777766    78888742                  12345567778899999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       103 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G  135 (253)
T 1uiy_A          103 GPAVAGGAGLALACDL--VVMDEEARLGYTEVKIG  135 (253)
T ss_dssp             SCEETHHHHHHHTSSE--EEEETTCEEECCHHHHT
T ss_pred             CeeeHHHHHHHHhCCE--EEEcCCcEEeCcccccC
Confidence            9999999999999999  99999999987655444

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=97.75  E-value=0.00019  Score=62.42  Aligned_cols=99  Identities=15%  Similarity=0.258  Sum_probs=76.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE-e----CCCCCHHH----------------HHHHHHHHh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-N----SPGGSVTA----------------GMAIFDTIR  177 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-N----SPGGsV~a----------------GlaIyD~Ir  177 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.= +    |.|+++.+                ...+++.|.
T Consensus        12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~   91 (250)
T 2a7k_A           12 VITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVL   91 (250)
T ss_dssp             EEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHH
Confidence            3555544     77888899999998888766566666665 3    45777632                124566788


Q ss_pred             hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       178 ~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|.
T Consensus        92 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  136 (250)
T 2a7k_A           92 NVNKPTIAAVDGYAIGMGFQFALMFDQ--RLMASTANFVMPELKHGI  136 (250)
T ss_dssp             TCCSCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGTC
T ss_pred             cCCCCEEEEECCeEeHHHHHHHHhCCE--EEEcCCCEEeCcccccCC
Confidence            889999999999999999999999999  999999999876665443

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=97.73  E-value=3.3e-05  Score=71.60  Aligned_cols=92  Identities=18%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             EEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHH----------HHHHHHHhhhCCCeEEEEccccchH
Q 025891          125 IRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG----------MAIFDTIRHIRPDVSTVCVGLAASM  194 (246)
Q Consensus       125 IfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aG----------laIyD~Ir~~k~~V~Tvv~G~AASa  194 (246)
                      .+.+|.++++..+.+...+. +-.+ ..-||...+||||..+..+          ..+...+...+.|+.+++.|.|++.
T Consensus       149 ~~~~G~~~~~~~~Ka~r~~~-~A~~-~~lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GG  226 (339)
T 2f9y_A          149 RRNFGMPAPEGYRKALRLMQ-MAER-FKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSG  226 (339)
T ss_dssp             HTGGGCCCHHHHHHHHHHHH-HHHH-TTCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHH
T ss_pred             hhhcCCCCHHHHHHHHHHHH-HHhh-cCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcH
Confidence            34456677777666654443 3222 2569999999999876544          3355667888899999999999999


Q ss_pred             HHHHHccCCCCcEEecCCcEEEEEcC
Q 025891          195 GAFLLSAGTKGKRYSLPNSRIMIHQP  220 (246)
Q Consensus       195 AslIl~AGdkgkR~a~pnS~iMIHqP  220 (246)
                      |+.++++||.  ++|.|++++.+-.|
T Consensus       227 Ga~~~~~~D~--via~p~A~~~v~~P  250 (339)
T 2f9y_A          227 GALAIGVGDK--VNMLQYSTYSVISP  250 (339)
T ss_dssp             HHHTTCCCSE--EEECTTCEEESSCH
T ss_pred             HHHHHhccCe--eeecCCCEEEeecc
Confidence            9999999998  99999999986443

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=97.62  E-value=0.00036  Score=61.25  Aligned_cols=99  Identities=14%  Similarity=0.173  Sum_probs=77.2

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH---------------HHHHHHHHhhh
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHI  179 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a---------------GlaIyD~Ir~~  179 (246)
                      +|.|+.|    ++.++...+.+.|..++.++..+-|.|.-+     |.|+++.+               ...+++.|..+
T Consensus        17 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (260)
T 1sg4_A           17 VMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQS   96 (260)
T ss_dssp             EEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcC
Confidence            3555544    778888889988888887666777777776     56777642               23456678888


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEec--CCcEEEEEcCCCCC
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSL--PNSRIMIHQPLGGA  224 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~--pnS~iMIHqP~~g~  224 (246)
                      +.||.+.+.|.|.++|.-|+++||.  |++.  ++++|.+-...-|.
T Consensus        97 ~kPvIAav~G~a~GgG~~lalacD~--~ia~~~~~a~f~~pe~~~Gl  141 (260)
T 1sg4_A           97 NLVLVSAINGACPAGGCLVALTCDY--RILADNPRYCIGLNETQLGI  141 (260)
T ss_dssp             SSEEEEEECEEBCHHHHHHHTTSSE--EEEECCTTCCBSCCGGGGTC
T ss_pred             CCCEEEEECCeeehHHHHHHHhCCE--EEEecCCCCEEeCchhhhCC
Confidence            9999999999999999999999999  9999  89998766555443

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=97.61  E-value=0.0004  Score=61.42  Aligned_cols=99  Identities=14%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-----CCCHHH---------------HHHHHHHHhh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-----GGSVTA---------------GMAIFDTIRH  178 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP-----GGsV~a---------------GlaIyD~Ir~  178 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+.+     |+++.+               ...+++.|..
T Consensus        24 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  103 (272)
T 1hzd_A           24 VLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIAN  103 (272)
T ss_dssp             EEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHh
Confidence            4555543     77888899999998888766667777765544     777643               2345667888


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|.
T Consensus       104 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  147 (272)
T 1hzd_A          104 LPVPTIAAIDGLALGGGLELALACDI--RVAASSAKMGLVETKLAI  147 (272)
T ss_dssp             CSSCEEEEESEEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTC
T ss_pred             CCCCEEEEeCceEEecHHHHHHhCCE--EEEcCCCEEeCchhccCC
Confidence            89999999999999999999999999  999999999887766553

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.59  E-value=4.9e-05  Score=70.04  Aligned_cols=90  Identities=16%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHH----------HHHHHHHhhhCCCeEEEEccccchHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG----------MAIFDTIRHIRPDVSTVCVGLAASMGA  196 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aG----------laIyD~Ir~~k~~V~Tvv~G~AASaAs  196 (246)
                      .+|.++++..+.+...+. +-... .-||...+||||..+..+          ..+...+...+.|+.+++.|.|.|.|+
T Consensus       137 ~~G~~~~~~~~Ka~r~~~-~A~~~-~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa  214 (327)
T 2f9i_A          137 NFGMAHPEGYRKALRLMK-QAEKF-NRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGA  214 (327)
T ss_dssp             GGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHH
T ss_pred             hcCCCCHHHHHHHHHHHH-HHhhc-CCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHH
Confidence            456677777666654443 32222 569999999999876554          335566788889999999999999999


Q ss_pred             HHHccCCCCcEEecCCcEEEEEcC
Q 025891          197 FLLSAGTKGKRYSLPNSRIMIHQP  220 (246)
Q Consensus       197 lIl~AGdkgkR~a~pnS~iMIHqP  220 (246)
                      .++++||.  ++|.|++++.+-.|
T Consensus       215 ~~~~~~D~--via~~~A~~~v~~p  236 (327)
T 2f9i_A          215 LGIGIANK--VLMLENSTYSVISP  236 (327)
T ss_dssp             HTTCCCSE--EEEETTCBCBSSCH
T ss_pred             HHHHCCCE--EEEcCCceEeecCc
Confidence            99999998  99999999876433

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=97.58  E-value=0.00048  Score=59.95  Aligned_cols=98  Identities=12%  Similarity=-0.045  Sum_probs=77.6

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH----------HHHHHHhhhCCCeE
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM----------AIFDTIRHIRPDVS  184 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl----------aIyD~Ir~~k~~V~  184 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+-.          .++..|..++.||.
T Consensus        15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvI   94 (243)
T 2q35_A           15 QITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPII   94 (243)
T ss_dssp             EEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhhHHHHHHHHHHhCCCCEE
Confidence            4556554     778888899999888887666666776654    7888886533          24677888999999


Q ss_pred             EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus        95 Aav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  131 (243)
T 2q35_A           95 AAMQGHSFGGGLLLGLYADF--VVFSQESVYATNFMKYG  131 (243)
T ss_dssp             EEECSEEETHHHHHHHTSSE--EEEESSSEEECCHHHHT
T ss_pred             EEEcCccccchHHHHHhCCE--EEEeCCCEEECCccccC
Confidence            99999999999999999999  99999999877554433

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=97.57  E-value=0.00064  Score=59.87  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=75.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-------------------------
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------------  169 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-------------------------  169 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |.||++.+-                         
T Consensus        16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (275)
T 1dci_A           16 HVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISR   95 (275)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHH
Confidence            4556543     778888999999888887655666666543    678887431                         


Q ss_pred             -HHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          170 -MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       170 -laIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                       ..+++.|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus        96 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  148 (275)
T 1dci_A           96 YQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI--RYCTQDAFFQVKEVDVG  148 (275)
T ss_dssp             HHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGT
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence             12455677889999999999999999999999999  99999999987665544

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=97.56  E-value=0.00039  Score=61.48  Aligned_cols=98  Identities=15%  Similarity=0.115  Sum_probs=78.4

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-----CCCHHH----------------HHHHHHHHh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-----GGSVTA----------------GMAIFDTIR  177 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP-----GGsV~a----------------GlaIyD~Ir  177 (246)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=+.+     |+++.+                ...+++.|.
T Consensus        25 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  104 (273)
T 2uzf_A           25 KVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIR  104 (273)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCTHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHH
Confidence            4556655     77888888999998888776677787776555     777632                225667888


Q ss_pred             hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       178 ~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+....-|
T Consensus       105 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  148 (273)
T 2uzf_A          105 IIPKPVIAMVKGYAVGGGNVLNVVCDL--TIAADNAIFGQTGPKVG  148 (273)
T ss_dssp             HSSSCEEEEECEEEETHHHHHHHHSSE--EEEETTCEEECCGGGTT
T ss_pred             hCCCCEEEEECCEEeehhHHHHHhCCE--EEEcCCCEEECchhhhC
Confidence            889999999999999999999999999  99999999987766544

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=97.52  E-value=0.00035  Score=61.33  Aligned_cols=98  Identities=14%  Similarity=0.004  Sum_probs=77.2

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEE-e----CCCCCHHH--------------H-HHHHHHHhhh
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-N----SPGGSVTA--------------G-MAIFDTIRHI  179 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-N----SPGGsV~a--------------G-laIyD~Ir~~  179 (246)
                      +|.|+.|    ++.++.+.+.+.|..++.++..+-|.|.- +    |.|+++.+              . ..+++.|..+
T Consensus        21 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (265)
T 2ppy_A           21 EIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARS  100 (265)
T ss_dssp             EEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcC
Confidence            4556543    67788888988888888766667677766 3    45888753              1 3567788888


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEecCCc-EEEEEcCCCC
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNS-RIMIHQPLGG  223 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS-~iMIHqP~~g  223 (246)
                      +.||.+.+.|.|.++|.-|+++||-  |++.+++ +|.+-...-|
T Consensus       101 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~ag~f~~pe~~~G  143 (265)
T 2ppy_A          101 PQVYIACLEGHTVGGGLEMALACDL--RFMGDEAGKIGLPEVSLG  143 (265)
T ss_dssp             SSEEEEEECSEEETHHHHHHHTSSE--EEEETTCCCEECCGGGGT
T ss_pred             CCCEEEEECCEEeeHHHHHHHhCCE--EEEeCCCCEEECcccccC
Confidence            9999999999999999999999999  9999999 9987665544

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=97.51  E-value=0.00052  Score=61.39  Aligned_cols=99  Identities=19%  Similarity=0.156  Sum_probs=76.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH----------------HHHHHHHHhh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA----------------GMAIFDTIRH  178 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a----------------GlaIyD~Ir~  178 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+                ...+++.|..
T Consensus        45 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (287)
T 2vx2_A           45 NIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRN  124 (287)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHh
Confidence            4556543     778888899998888877655666666554    56776521                2345677888


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|.
T Consensus       125 ~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl  168 (287)
T 2vx2_A          125 HPVPVIAMVNGLATAAGCQLVASCDI--AVASDKSSFATPGVNVGL  168 (287)
T ss_dssp             CSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTC
T ss_pred             CCCCEEEEECCEEEcHHHHHHHhCCE--EEEcCCCEEECchhhhCC
Confidence            89999999999999999999999999  999999999876665443

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=97.47  E-value=0.0013  Score=58.01  Aligned_cols=99  Identities=11%  Similarity=0.122  Sum_probs=76.7

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-----------------HHHHHHHh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-----------------MAIFDTIR  177 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-----------------laIyD~Ir  177 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=.    |-|+++.+-                 ..++..|.
T Consensus        17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   96 (266)
T 3fdu_A           17 TLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAA   96 (266)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHH
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            4556655     678888889888888887665665655432    455665432                 34667888


Q ss_pred             hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       178 ~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|.
T Consensus        97 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  141 (266)
T 3fdu_A           97 RLSKPLIIAVKGVAIGIGVTILLQADL--VFADNTALFQIPFVSLGL  141 (266)
T ss_dssp             HCCSCEEEEECSEEETHHHHGGGGCSE--EEECTTCEEECCTTTTTC
T ss_pred             hCCCCEEEEECCEEehHHHHHHHhCCE--EEEcCCCEEECchhhhCC
Confidence            899999999999999999999999999  999999999877666553

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=97.43  E-value=0.001  Score=58.55  Aligned_cols=98  Identities=13%  Similarity=0.058  Sum_probs=75.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH--------------------HHHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------------GMAIFD  174 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a--------------------GlaIyD  174 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+                    ...++.
T Consensus        15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (269)
T 1nzy_A           15 EITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIH   94 (269)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHH
Confidence            3455544     778888899999988887666676766654    67777631                    123456


Q ss_pred             HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus        95 ~l~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G  141 (269)
T 1nzy_A           95 KIIRVKRPVLAAINGVAAGGGLGISLASDM--AICADSAKFVCAWHTIG  141 (269)
T ss_dssp             HHHHCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             HHHhCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEEeCcccccC
Confidence            677889999999999999999999999999  99999999987654433

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=97.41  E-value=0.001  Score=58.50  Aligned_cols=98  Identities=11%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH----------------HHHHHHHHhhh
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA----------------GMAIFDTIRHI  179 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a----------------GlaIyD~Ir~~  179 (246)
                      +|.|+-|    ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.+                ...+++.|..+
T Consensus        18 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (261)
T 3pea_A           18 VATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKC   97 (261)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhC
Confidence            4556654    778888889998888887665666666433    55666421                13467788899


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus        98 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  139 (261)
T 3pea_A           98 SKPVIAAIHGAALGGGLEFAMSCHM--RFATESAKLGLPELTLG  139 (261)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             CCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            9999999999999999999999999  99999999987665544

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=97.40  E-value=0.00026  Score=62.12  Aligned_cols=98  Identities=16%  Similarity=0.173  Sum_probs=76.4

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH-------------HHHHHHhhhCC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------AIFDTIRHIRP  181 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl-------------aIyD~Ir~~k~  181 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+-.             ..++.|..++.
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k   98 (260)
T 1mj3_A           19 LIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKK   98 (260)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSS
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHHHHHHHHHhCCC
Confidence            3556544     788888999999988887666676666654    5788875421             12345667788


Q ss_pred             CeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       182 ~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ||.+.+.|.|.++|.-|+++||-  |++.++++|.+.....|
T Consensus        99 PvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  138 (260)
T 1mj3_A           99 PVIAAVNGYALGGGCELAMMCDI--IYAGEKAQFGQPEILLG  138 (260)
T ss_dssp             CEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             CEEEEECCEEEeHHHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            99999999999999999999999  99999999988766544

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=97.39  E-value=0.0012  Score=57.87  Aligned_cols=98  Identities=16%  Similarity=0.104  Sum_probs=75.6

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHH-----H------------HHHHHHHHhh
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----A------------GMAIFDTIRH  178 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~-----a------------GlaIyD~Ir~  178 (246)
                      +|.|+-|    ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.     .            ...++..|..
T Consensus        23 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  102 (264)
T 1wz8_A           23 EITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLN  102 (264)
T ss_dssp             EEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHHHHHHHHHHHHHc
Confidence            3455544    778888889988888877666677777665    7788873     1            1134556778


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus       103 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  145 (264)
T 1wz8_A          103 FPRPVVAAVEKVAVGAGLALALAADI--AVVGKGTRLLDGHLRLG  145 (264)
T ss_dssp             SSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             CCCCEEEEECCeeechhHHHHHhCCE--EEecCCCEEeCchhhcC
Confidence            88999999999999999999999999  99999999987654433

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=97.36  E-value=0.0014  Score=57.25  Aligned_cols=91  Identities=12%  Similarity=0.130  Sum_probs=73.1

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHH----------------HHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aG----------------laIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.    .=|.|+++.+-                ..++..|..++.||.+.+.|.
T Consensus        30 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  109 (256)
T 3qmj_A           30 FNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGL  109 (256)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            6788888898888888876656666652    45677776542                346778888999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.++|.-|+++||-  |++.++++|.+....-|
T Consensus       110 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  140 (256)
T 3qmj_A          110 GVGIGATILGYADL--AFMSSTARLKCPFTSLG  140 (256)
T ss_dssp             EETHHHHGGGGCSE--EEEETTCEEECCGGGC-
T ss_pred             ehhHHHHHHHhCCE--EEEeCCCEEECcccccC
Confidence            99999999999999  99999999988766554

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=97.31  E-value=0.00042  Score=61.08  Aligned_cols=98  Identities=15%  Similarity=0.176  Sum_probs=75.2

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHH-------------HHHHHHHhhhCC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG-------------MAIFDTIRHIRP  181 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aG-------------laIyD~Ir~~k~  181 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.    .=|.|+++.+-             ..+++.|..++.
T Consensus        22 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (263)
T 3moy_A           22 LIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRK  101 (263)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCS
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCC
Confidence            4555544     6778888898888888876655555552    34556676542             236788889999


Q ss_pred             CeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       182 ~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       102 PvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  141 (263)
T 3moy_A          102 PIVAAVAGYALGGGCELAMLCDL--VIAADTARFGQPEITLG  141 (263)
T ss_dssp             CEEEEECBEEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             CEEEEECCEeehHHHHHHHHCCE--EEecCCCEEeCcccccC
Confidence            99999999999999999999999  99999999987665544

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=97.30  E-value=0.0011  Score=59.19  Aligned_cols=98  Identities=20%  Similarity=0.211  Sum_probs=75.2

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH---------------HHHHHHHHhhhC
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA---------------GMAIFDTIRHIR  180 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a---------------GlaIyD~Ir~~k  180 (246)
                      +|.|+-|    ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.+               ...++..|..++
T Consensus        36 ~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (277)
T 4di1_A           36 TLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIP  115 (277)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCC
Confidence            4556655    77888889999888888765555555532    244566543               234677788899


Q ss_pred             CCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          181 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       181 ~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       116 kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lG  156 (277)
T 4di1_A          116 KPTVAAVTGYALGAGLTLALAADW--RVSGDNVKFGATEILAG  156 (277)
T ss_dssp             SCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             CCEEEEECCeEehhHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            999999999999999999999999  99999999987665544

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=97.29  E-value=0.0015  Score=58.08  Aligned_cols=97  Identities=18%  Similarity=0.122  Sum_probs=72.3

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------------HHHHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------GMAIFDT  175 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------------GlaIyD~  175 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++.. -|.|.=+    |.|+++.+                   ...++..
T Consensus        38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T 2f6q_A           38 KIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGC  116 (280)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHH
Confidence            3556544     7788888899888888765544 4444333    66776532                   1235567


Q ss_pred             HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus       117 l~~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  162 (280)
T 2f6q_A          117 FIDFPKPLIAVVNGPAVGISVTLLGLFDA--VYASDRATFHTPFSHLG  162 (280)
T ss_dssp             HHSCCSCEEEEECSCEETHHHHGGGGCSE--EEEETTCEEECCTGGGT
T ss_pred             HHcCCCCEEEEECCeeehHHHHHHHhCCE--EEECCCcEEECchHhhC
Confidence            78889999999999999999999999999  99999999987665544

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=97.26  E-value=0.0015  Score=57.51  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=74.9

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC-----CCCCHHH---------------HHHHHHHHhh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-----PGGSVTA---------------GMAIFDTIRH  178 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS-----PGGsV~a---------------GlaIyD~Ir~  178 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+.     -|+++.+               ...++..|..
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  100 (265)
T 3kqf_A           21 KISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQ  100 (265)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHh
Confidence            3555444     6778888898888888766555555554433     2555532               3456778888


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|.
T Consensus       101 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  144 (265)
T 3kqf_A          101 LPQPVIAAINGIALGGGTELSLACDF--RIAAESASLGLTETTLAI  144 (265)
T ss_dssp             CSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGTC
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCcEEECcccccCc
Confidence            99999999999999999999999999  999999999877666553

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=97.25  E-value=0.0013  Score=58.31  Aligned_cols=98  Identities=12%  Similarity=0.125  Sum_probs=72.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHH----------HHHHHHHHHhhhCCCeE
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVT----------AGMAIFDTIRHIRPDVS  184 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~----------aGlaIyD~Ir~~k~~V~  184 (246)
                      +|.|+-|     ++.++...+.+.|..++.+ ..+-|.|.    .=|.|+++.          ....++..|..++.||.
T Consensus        33 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvI  111 (264)
T 3he2_A           33 TIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVV  111 (264)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEE
Confidence            4556544     6788888888888877754 45555553    235566654          24567788889999999


Q ss_pred             EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      +.+.|.|.++|.-|+++||-  |++.++++|.+-....|.
T Consensus       112 Aav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  149 (264)
T 3he2_A          112 GAINGPAIGAGLQLAMQCDL--RVVAPDAFFQFPTSKYGL  149 (264)
T ss_dssp             EEECSCEETHHHHHHHHSSE--EEECTTCEEECTHHHHTC
T ss_pred             EEECCcEEcchhHHHHhCCE--EEEcCCCEEECcccccCc
Confidence            99999999999999999999  999999998765544443

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=97.25  E-value=0.00082  Score=58.87  Aligned_cols=87  Identities=10%  Similarity=0.080  Sum_probs=67.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCC-----CCCHHH--------------HHHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSP-----GGSVTA--------------GMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSP-----GGsV~a--------------GlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.|..++.++ .+-|.|.= +.|     |+++.+              ...++..|..++.||.+.+.|.
T Consensus        28 l~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  106 (261)
T 1ef8_A           28 LSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGS  106 (261)
T ss_dssp             CCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            56777888888887777655 66565554 433     666532              3456778888999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQP  220 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP  220 (246)
                      |.++|.-|+++||-  |++.++++|.+-..
T Consensus       107 a~GgG~~lalacD~--ria~~~a~f~~pe~  134 (261)
T 1ef8_A          107 VWGGAFEMIMSSDL--IIAASTSTFSMTPV  134 (261)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECCHH
T ss_pred             EEeHhHHHHHhCCE--EEecCCCEEeCchh
Confidence            99999999999999  99999999876543

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=97.22  E-value=0.0013  Score=57.71  Aligned_cols=98  Identities=14%  Similarity=0.125  Sum_probs=74.0

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHH--------------------HHHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA--------------------GMAIFD  174 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~a--------------------GlaIyD  174 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.    .=|.|+++.+                    ...++.
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (267)
T 3oc7_A           23 RLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMR  102 (267)
T ss_dssp             EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHH
Confidence            4556554     7788889999999888876656666663    3355666533                    123566


Q ss_pred             HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus       103 ~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  149 (267)
T 3oc7_A          103 AIVESRLPVIAAIDGHVRAGGFGLVGACDI--AVAGPRSSFALTEARIG  149 (267)
T ss_dssp             HHHHCSSCEEEEECSEEETTHHHHHHHSSE--EEECTTCEEECCGGGGT
T ss_pred             HHHhCCCCEEEEEcCeecccchHHHHHCCE--EEEcCCCEEeCcccccC
Confidence            777889999999999999999999999999  99999999986655544

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=97.21  E-value=0.0015  Score=57.45  Aligned_cols=100  Identities=17%  Similarity=0.221  Sum_probs=74.9

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHH---------------------HHHHHHH
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVT---------------------AGMAIFD  174 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~---------------------aGlaIyD  174 (246)
                      +|.|+-|    ++.++...+.+.|..++.++..+-|.|.    .=|.|+++.                     ....++.
T Consensus        19 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (263)
T 3l3s_A           19 TLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALML   98 (263)
T ss_dssp             EEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHH
Confidence            3556554    7788888898888888766555555552    234455542                     1234677


Q ss_pred             HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCC
Q 025891          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQ  225 (246)
Q Consensus       175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~  225 (246)
                      .|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|..
T Consensus        99 ~l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~  147 (263)
T 3l3s_A           99 DLAHCPKPTIALVEGIATAAGLQLMAACDL--AYASPAARFCLPGVQNGGF  147 (263)
T ss_dssp             HHHTCSSCEEEEESSEEETHHHHHHHHSSE--EEECTTCEEECCTTTTTSC
T ss_pred             HHHhCCCCEEEEECCEEEHHHHHHHHHCCE--EEecCCCEEeCchhccCCC
Confidence            788889999999999999999999999999  9999999998766665544

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=97.21  E-value=0.0027  Score=56.12  Aligned_cols=98  Identities=15%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTI  176 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~I  176 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=+    |-|+++.+                  ...++..|
T Consensus        16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l   95 (268)
T 3i47_A           16 LLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSI   95 (268)
T ss_dssp             EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHH
Confidence            3556544     778888999988888887665665555433    45566532                  12356678


Q ss_pred             hhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       177 r~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus        96 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (268)
T 3i47_A           96 SQSPKPTIAMVQGAAFGGGAGLAAACDI--AIASTSARFCFSEVKLG  140 (268)
T ss_dssp             HHCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             HhCCCCEEEEECCEEEhHhHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            8889999999999999999999999999  99999999887655544

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=97.19  E-value=0.0011  Score=58.71  Aligned_cols=89  Identities=12%  Similarity=0.074  Sum_probs=69.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCC-----CCCHHH----------------HHHHHHHHhhhCCCeE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSP-----GGSVTA----------------GMAIFDTIRHIRPDVS  184 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSP-----GGsV~a----------------GlaIyD~Ir~~k~~V~  184 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=     ..+     |+++.+                ...+++.|..++.||.
T Consensus        34 l~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  113 (275)
T 4eml_A           34 FRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVI  113 (275)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCEE
Confidence            67788888888888888766566666665     333     555421                2346778889999999


Q ss_pred             EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      +.+.|.|.++|.-|+++||-  |++.++++|.+-...
T Consensus       114 Aav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~  148 (275)
T 4eml_A          114 ALVAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPK  148 (275)
T ss_dssp             EEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHH
T ss_pred             EEECCeeehHHHHHHHhCCE--EEEcCCCEEECcccc
Confidence            99999999999999999999  999999999875433

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=97.19  E-value=0.00079  Score=58.97  Aligned_cols=98  Identities=20%  Similarity=0.230  Sum_probs=74.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHH---------HHHHHHHHHhhhCCCeEE
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT---------AGMAIFDTIRHIRPDVST  185 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~---------aGlaIyD~Ir~~k~~V~T  185 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.         ....++..|..++.||.+
T Consensus        18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIA   97 (255)
T 3p5m_A           18 RIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIA   97 (255)
T ss_dssp             EEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEE
Confidence            3555554     678888899999888887655555555322    3344443         234678889999999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus        98 av~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  133 (255)
T 3p5m_A           98 GVHGAAVGFGCSLALACDL--VVAAPASYFQLAFTRVG  133 (255)
T ss_dssp             EECSEEETHHHHHHHHSSE--EEECTTCEEECGGGGGT
T ss_pred             EeCCeehhhHHHHHHHCCE--EEEcCCcEEeCcccccC
Confidence            9999999999999999999  99999999987665544

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=97.19  E-value=0.0014  Score=58.34  Aligned_cols=95  Identities=20%  Similarity=0.176  Sum_probs=73.3

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHH-----------------HHHHHHHh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG-----------------MAIFDTIR  177 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aG-----------------laIyD~Ir  177 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.    .=|.|+++.+-                 ..++..|.
T Consensus        40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~  119 (276)
T 3rrv_A           40 IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMA  119 (276)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence            3555554     6788889999999888876656666653    34666776431                 24566788


Q ss_pred             hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcC
Q 025891          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQP  220 (246)
Q Consensus       178 ~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP  220 (246)
                      .++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-..
T Consensus       120 ~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~  160 (276)
T 3rrv_A          120 RCRIPVVAAVNGPAVGLGCSLVALSDI--VYIAENAYLADPHV  160 (276)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHTSSE--EEEETTCEEECCHH
T ss_pred             hCCCCEEEEECceeeHHHHHHHHHCCE--EEEeCCCEEECchh
Confidence            889999999999999999999999999  99999999875443

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=97.18  E-value=0.0019  Score=57.16  Aligned_cols=100  Identities=19%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------------HHHHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------GMAIFDT  175 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------------GlaIyD~  175 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+                   ...++..
T Consensus        29 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (279)
T 3g64_A           29 TVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRA  108 (279)
T ss_dssp             EEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHH
Confidence            4666654     778888999999988887665666666432    44666421                   1345667


Q ss_pred             HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCC
Q 025891          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQ  225 (246)
Q Consensus       176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~  225 (246)
                      |..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|..
T Consensus       109 l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~  156 (279)
T 3g64_A          109 VRECPFPVIAALHGVAAGAGAVLALAADF--RVADPSTRFAFLFTRVGLS  156 (279)
T ss_dssp             HHHSSSCEEEEECSEEETHHHHHHHHSSE--EEECTTCEEECCGGGGTCC
T ss_pred             HHhCCCCEEEEEcCeeccccHHHHHhCCE--EEEeCCCEEeCchhhcCCC
Confidence            88889999999999999999999999999  9999999998766555533

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=97.14  E-value=0.003  Score=55.92  Aligned_cols=98  Identities=17%  Similarity=0.085  Sum_probs=73.7

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-------------------------
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------------  169 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-------------------------  169 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.+-                         
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (280)
T 1pjh_A           21 IIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVAR  100 (280)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHH
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHH
Confidence            4556554     778888889888888877655555555432    567776431                         


Q ss_pred             -HHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEec-CCcEEEEEcCCCC
Q 025891          170 -MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL-PNSRIMIHQPLGG  223 (246)
Q Consensus       170 -laIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~-pnS~iMIHqP~~g  223 (246)
                       ..++..|..++.||.+.+.|.|.++|.-|+++||-  |++. ++++|.+-....|
T Consensus       101 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~--~ia~~~~a~f~~pe~~lG  154 (280)
T 1pjh_A          101 NVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDI--VYSINDKVYLLYPFANLG  154 (280)
T ss_dssp             HHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSE--EEESSTTCEEECCHHHHT
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCE--EEEeCCCCEEeCchhhcC
Confidence             13456778889999999999999999999999999  9999 9999887554433

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=97.13  E-value=0.0015  Score=58.44  Aligned_cols=98  Identities=17%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-----CCCHHH-----------------HHHHHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-----GGSVTA-----------------GMAIFDTI  176 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP-----GGsV~a-----------------GlaIyD~I  176 (246)
                      +|.|+-+     ++.++.+.+.+.|..++.++..+-|.|.=+.+     |+++.+                 ...++..|
T Consensus        40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l  119 (289)
T 3t89_A           40 KITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQI  119 (289)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHH
Confidence            3455543     67888888888888888766666666665544     666521                 23467788


Q ss_pred             hhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       177 r~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus       120 ~~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  164 (289)
T 3t89_A          120 RTCPKPVVAMVAGYSIGGGHVLHMMCDL--TIAADNAIFGQTGPKVG  164 (289)
T ss_dssp             HHCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             HcCCCCEEEEECCEeehHHHHHHHhCCE--EEEeCCCEEeccccccC
Confidence            8999999999999999999999999999  99999999987544433

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=97.13  E-value=0.0026  Score=55.65  Aligned_cols=91  Identities=13%  Similarity=0.087  Sum_probs=69.6

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-------------------HHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-------------------laIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.|..++.++ .+-|.|.=+    |.|+++.+-                   ..++..|..++.||.+.+
T Consensus        30 l~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  108 (261)
T 2gtr_A           30 LNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAV  108 (261)
T ss_dssp             ECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67788888888888887654 455555432    566776431                   234556778899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .|.|.++|.-|+++||-  |++.++++|.+-...-|.
T Consensus       109 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  143 (261)
T 2gtr_A          109 NGPAIGLGASILPLCDV--VWANEKAWFQTPYTTFGQ  143 (261)
T ss_dssp             CSCEETHHHHTGGGSSE--EEEETTCEEECCTTTTTC
T ss_pred             CCeEeeHHHHHHHhCCE--EEEcCCCEEeCchhccCC
Confidence            99999999999999999  999999999876666553

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=97.11  E-value=0.0017  Score=58.06  Aligned_cols=100  Identities=12%  Similarity=0.163  Sum_probs=75.7

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH----------------HHHHHHHHhh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA----------------GMAIFDTIRH  178 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a----------------GlaIyD~Ir~  178 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=    =|-|+++..                ...++..|..
T Consensus        38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~  117 (286)
T 3myb_A           38 TLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQR  117 (286)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHc
Confidence            4555553     67888888988888887765556555542    245666533                2345677888


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQ  225 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~  225 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|..
T Consensus       118 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~  162 (286)
T 3myb_A          118 LPAPVIARVHGIATAAGCQLVAMCDL--AVATRDARFAVSGINVGLF  162 (286)
T ss_dssp             SSSCEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECGGGGGTCC
T ss_pred             CCCCEEEEECCeehHHHHHHHHhCCE--EEEcCCCEEECcccccCCC
Confidence            89999999999999999999999999  9999999998766665543

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=97.10  E-value=0.0047  Score=53.72  Aligned_cols=98  Identities=13%  Similarity=0.162  Sum_probs=73.9

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCH--------------HHHHHHHHHHhhhC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSV--------------TAGMAIFDTIRHIR  180 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV--------------~aGlaIyD~Ir~~k  180 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=+    |-|+++              .....++..|..++
T Consensus        12 ~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (254)
T 3hrx_A           12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLE   91 (254)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCS
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCC
Confidence            4556554     788888999999988887655554444321    223333              23345778889999


Q ss_pred             CCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          181 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       181 ~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus        92 kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lG  132 (254)
T 3hrx_A           92 KPLVVAVNGVAAGAGMSLALWGDL--RLAAVGASFTTAFVRIG  132 (254)
T ss_dssp             SCEEEEECSEEETHHHHHHTTCSE--EEEETTCEEECCGGGGT
T ss_pred             CCEEEEECCEeeehhhhhhhccce--eeEcCCCEEEchhhCcC
Confidence            999999999999999999999999  99999999987665544

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.07  E-value=0.0016  Score=64.01  Aligned_cols=90  Identities=16%  Similarity=0.187  Sum_probs=73.9

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++.+.+..... +..+-. ...-||...+|+||          |-..++..+.+.+.....|+.+++.|.|+|+|++.
T Consensus       361 G~l~~~~a~Kaar-~i~~a~-~~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~a  438 (548)
T 2bzr_A          361 GCLDINASEKAAR-FVRTCD-CFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCV  438 (548)
T ss_dssp             GCBCHHHHHHHHH-HHHHHH-HTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHH-hcCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHH
Confidence            5677776665544 333322 23679999999999          88999999999999999999999999999999998


Q ss_pred             Hcc----CCCCcEEecCCcEEEEEcCCC
Q 025891          199 LSA----GTKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       199 l~A----GdkgkR~a~pnS~iMIHqP~~  222 (246)
                      +++    +|.  .+|.|++++.+..|.+
T Consensus       439 m~~~~~~~d~--~~awp~a~i~Vmgpeg  464 (548)
T 2bzr_A          439 MGSKDMGCDV--NLAWPTAQIAVMGASG  464 (548)
T ss_dssp             TTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred             hccccCCCCE--EEEcCCCEEEecCHHH
Confidence            876    666  8999999999888765

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=97.06  E-value=0.0024  Score=58.69  Aligned_cols=91  Identities=16%  Similarity=0.091  Sum_probs=73.1

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-----------CCCHHH--------------------------HHHHH
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-----------GGSVTA--------------------------GMAIF  173 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP-----------GGsV~a--------------------------GlaIy  173 (246)
                      ++.++.+.|.+.|..++.++..+-|.|.=+.+           |+++.+                          ...++
T Consensus        81 l~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (334)
T 3t8b_A           81 FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQ  160 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHH
Confidence            67888889999888888766667777764443           666532                          12356


Q ss_pred             HHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEec-CCcEEEEEcCCCC
Q 025891          174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL-PNSRIMIHQPLGG  223 (246)
Q Consensus       174 D~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~-pnS~iMIHqP~~g  223 (246)
                      ..|+.++.||.+.+.|.|.++|.-|+++||-  |++. ++++|.+-....|
T Consensus       161 ~~i~~~~kPvIAaV~G~A~GgG~~LalacD~--riAs~~~A~f~~pe~~lG  209 (334)
T 3t8b_A          161 RLIRFMPKVVICLVNGWAAGGGHSLHVVCDL--TLASREYARFKQTDADVG  209 (334)
T ss_dssp             HHHHHSSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECCCTTCS
T ss_pred             HHHHhCCCCEEEEECCccccCcchhHhhCCE--EEEeCCCcEEECcccccC
Confidence            7788999999999999999999999999999  9999 9999988766655

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=97.04  E-value=0.0013  Score=58.16  Aligned_cols=98  Identities=10%  Similarity=0.066  Sum_probs=71.8

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH------------H--------HHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM------------A--------IFD  174 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl------------a--------IyD  174 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.+-.            .        +++
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (276)
T 2j5i_A           21 FVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWK  100 (276)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHH
Confidence            3455544     677888888888888876554455555443    7788875421            0        123


Q ss_pred             HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       101 ~l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  147 (276)
T 2j5i_A          101 LLRMYAKPTIAMVNGWCFGGGFSPLVACDL--AICADEATFGLSEINWG  147 (276)
T ss_dssp             TTTTCSSCEEEEECSCEEGGGHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             HHHhCCCCEEEEECCeeehhHHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            455667899999999999999999999999  99999999987665544

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=97.01  E-value=0.0018  Score=57.32  Aligned_cols=98  Identities=14%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH-----------------HHHHHHHhh
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-----------------MAIFDTIRH  178 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG-----------------laIyD~Ir~  178 (246)
                      +|.|+-|    ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.+-                 ..++..|..
T Consensus        26 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  105 (272)
T 3qk8_A           26 NLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVN  105 (272)
T ss_dssp             EEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHh
Confidence            4556555    67888888999888888766555555532    2455665321                 235667888


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       106 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  148 (272)
T 3qk8_A          106 LDKPVVSAIRGPAVGAGLVVALLADI--SVASATAKIIDGHTKLG  148 (272)
T ss_dssp             CCSCEEEEECSEEEHHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECchhccC
Confidence            89999999999999999999999999  99999999987655433

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=96.99  E-value=0.0014  Score=57.59  Aligned_cols=98  Identities=17%  Similarity=0.170  Sum_probs=71.8

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH------------HHH-HHHHH-h--h
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------GMA-IFDTI-R--H  178 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a------------Gla-IyD~I-r--~  178 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=    =|.|+++..            ... +++.| .  .
T Consensus        21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (265)
T 3rsi_A           21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHT  100 (265)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHHHHHHHTTSSCC
T ss_pred             EEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHhcC
Confidence            4556655     77888999999998888765555555432    233455420            023 67777 7  7


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       101 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  143 (265)
T 3rsi_A          101 LTKPLIAAVNGACLGGGCEMLQQTDI--RVSDEHATFGLPEVQRG  143 (265)
T ss_dssp             CSSCEEEEECSCEETHHHHHHTTCSE--EEEETTCEEECGGGGGT
T ss_pred             CCCCEEEEECCeeeHHHHHHHHHCCE--EEecCCCEEECchhccC
Confidence            88999999999999999999999999  99999999987665544

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=96.99  E-value=0.0026  Score=54.88  Aligned_cols=91  Identities=20%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEE----EEeCCCCCHHH---------------HHHHHHHHhhhCCCeEEEEcccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIM----YLNSPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGLA  191 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L----~INSPGGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~G~A  191 (246)
                      ++.++...+.+.|..++.+ +.+-|.|    ..=|-|+++.+               ...++..|..++.||.+.+.|.|
T Consensus        28 l~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  106 (233)
T 3r6h_A           28 LGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHA  106 (233)
T ss_dssp             CSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEE
T ss_pred             CCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            6778888888888888754 3443444    12344556432               24567788888999999999999


Q ss_pred             chHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .++|.-|+++||-  |++.++++|.+-...-|.
T Consensus       107 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl  137 (233)
T 3r6h_A          107 IAMGAFLLCSGDH--RVAAHAYNVQANEVAIGM  137 (233)
T ss_dssp             ETHHHHHHTTSSE--EEECTTCCEECCGGGGTC
T ss_pred             hHHHHHHHHhCCE--EEEeCCcEEECchhhhCC
Confidence            9999999999999  999999999876655554

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=96.98  E-value=0.004  Score=55.81  Aligned_cols=90  Identities=16%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-------------------HHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-------------------laIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.|..++.++ .+-|.|.=+    |-|+++.+-                   ..++..|..++.||.+.+
T Consensus        48 l~~~m~~~L~~al~~~~~d~-~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV  126 (291)
T 2fbm_A           48 LNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSV  126 (291)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCC-CeEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            77888888988888887654 444443322    567776431                   124556778899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       127 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lG  160 (291)
T 2fbm_A          127 NGPAIGLGASILPLCDL--VWANEKAWFQTPYTTFG  160 (291)
T ss_dssp             CSCEETHHHHTGGGSSE--EEEETTCEEECCHHHHT
T ss_pred             CCeeecHHHHHHHhCCE--EEEeCCCEEECcHHhcC
Confidence            99999999999999999  99999999987554433

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=96.98  E-value=0.0016  Score=57.22  Aligned_cols=84  Identities=10%  Similarity=0.019  Sum_probs=66.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH---------------HHHHHHHHhhhCCCeEEEEcccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGLA  191 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~G~A  191 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.+               ...++..|..++.||.+.+.|.|
T Consensus        40 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  119 (257)
T 1szo_A           40 WTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPV  119 (257)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCB
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCch
Confidence            678888889888888887665666666544    55666532               12456778888999999999999


Q ss_pred             chHHHHHHccCCCCcEEecCCcEEEE
Q 025891          192 ASMGAFLLSAGTKGKRYSLPNSRIMI  217 (246)
Q Consensus       192 ASaAslIl~AGdkgkR~a~pnS~iMI  217 (246)
                      . +|.-|+++||.  |++.++++|.+
T Consensus       120 ~-GG~~LalacD~--ria~~~a~f~~  142 (257)
T 1szo_A          120 T-NAPEIPVMSDI--VLAAESATFQD  142 (257)
T ss_dssp             C-SSTHHHHTSSE--EEEETTCEEEC
T ss_pred             H-HHHHHHHHCCE--EEEeCCCEEec
Confidence            9 59999999999  99999999986

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=96.96  E-value=0.0026  Score=56.83  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=71.1

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHH----------------------HHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVT----------------------AGMAI  172 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~----------------------aGlaI  172 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.                      ....+
T Consensus        36 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (290)
T 3sll_A           36 LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEV  115 (290)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHH
Confidence            3556554     57788888888888887665555555532    23455532                      12346


Q ss_pred             HHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       173 yD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       116 ~~~l~~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  164 (290)
T 3sll_A          116 ILTLRRMHQPVIAAINGAAIGGGLCLALACDV--RVASQDAYFRAAGINNG  164 (290)
T ss_dssp             HHHHHHCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECTTTTTT
T ss_pred             HHHHHhCCCCEEEEECCeehHHHHHHHHHCCE--EEEeCCCEEECchhccC
Confidence            67788899999999999999999999999999  99999999887555544

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=96.94  E-value=0.0014  Score=58.45  Aligned_cols=99  Identities=16%  Similarity=0.147  Sum_probs=73.3

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHHH-------------HHHHHHhhhCC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM-------------AIFDTIRHIRP  181 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aGl-------------aIyD~Ir~~k~  181 (246)
                      +|.|+-+     ++.++.+.+.+.|..++.++..+-|.|.    .=|.|+++.+-.             ..+..|..++.
T Consensus        37 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k  116 (278)
T 3h81_A           37 IITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRT  116 (278)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCS
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHHHHHHHhCCC
Confidence            3555533     6788888898888888765555555552    345566654321             11456788899


Q ss_pred             CeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       182 ~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      ||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|.
T Consensus       117 PvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl  157 (278)
T 3h81_A          117 PTIAAVAGYALGGGCELAMMCDV--LIAADTAKFGQPEIKLGV  157 (278)
T ss_dssp             CEEEEECBEEETHHHHHHHHSSE--EEEETTCEEECGGGGGTC
T ss_pred             CEEEEECCeeehHHHHHHHHCCE--EEEcCCCEEECchhhcCc
Confidence            99999999999999999999999  999999999877666553

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=96.93  E-value=0.0015  Score=59.56  Aligned_cols=90  Identities=13%  Similarity=0.079  Sum_probs=68.1

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHH-------HHHHHHHhhh---CCCeEEEEccccchHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-------MAIFDTIRHI---RPDVSTVCVGLAASMGA  196 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aG-------laIyD~Ir~~---k~~V~Tvv~G~AASaAs  196 (246)
                      ++|.++....+.+...+......  .-++.+..+|+|+.+.++       -.|...+..+   +.|+.+++.|-|+++|+
T Consensus       130 ~ggslg~~~~~Ki~r~~e~A~~~--~~PvI~l~~sGGarlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~  207 (304)
T 2f9y_B          130 MGGSMGSVVGARFVRAVEQALED--NCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVS  207 (304)
T ss_dssp             TTTCBCTHHHHHHHHHHHHHHHH--TCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhC--CCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCccHHH
Confidence            45667777777777666544443  568999999999998554       2355566554   78999999999999995


Q ss_pred             HH-HccCCCCcEEecCCcEEEEEcC
Q 025891          197 FL-LSAGTKGKRYSLPNSRIMIHQP  220 (246)
Q Consensus       197 lI-l~AGdkgkR~a~pnS~iMIHqP  220 (246)
                      +. +++||.  ++|.|+|++.+--|
T Consensus       208 a~~a~~~D~--via~~~A~i~v~Gp  230 (304)
T 2f9y_B          208 ASFAMLGDL--NIAEPKALIGFAGP  230 (304)
T ss_dssp             TTGGGCCSE--EEECTTCBEESSCH
T ss_pred             HHHHhcCCE--EEEeCCcEEEeecH
Confidence            55 668988  99999999987644

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=96.92  E-value=0.004  Score=55.19  Aligned_cols=92  Identities=15%  Similarity=0.181  Sum_probs=69.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------------HHHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------GMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------------GlaIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+                   ...++..|..++.||.+.+
T Consensus        39 l~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav  118 (274)
T 4fzw_C           39 FNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAV  118 (274)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            778888889988888887655554444321    33444321                   1246677888999999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .|.|.++|.-|+++||-  |++.++++|.+-...-|.
T Consensus       119 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl  153 (274)
T 4fzw_C          119 NGVAAGAGATLALGGDI--VIAARSAKFVMAFSKLGL  153 (274)
T ss_dssp             CSCEETHHHHHHHTSSE--EEEETTCEEECCGGGTTC
T ss_pred             CCceeecCceeeeccce--EEECCCCEEECcccCccc
Confidence            99999999999999999  999999999877666553

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=96.89  E-value=0.0045  Score=55.37  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=72.7

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC----CC-CHHH------------------HHHHHHHH
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP----GG-SVTA------------------GMAIFDTI  176 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP----GG-sV~a------------------GlaIyD~I  176 (246)
                      +|.|+-|    ++.++...+.+.|..++.++..+-|.|.=+.+    || ++.+                  ...++..|
T Consensus        20 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l   99 (289)
T 3h0u_A           20 SATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKL   99 (289)
T ss_dssp             EEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHH
Confidence            3555554    77888888988888887665566666655433    34 6421                  23466778


Q ss_pred             hhhCCCeEEEEccccchHHHHHHccCCCCcEEecCC-cEEEEEcCC
Q 025891          177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPN-SRIMIHQPL  221 (246)
Q Consensus       177 r~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pn-S~iMIHqP~  221 (246)
                      ..++.||.+.+.|.|.++|.-|+++||-  |++.++ ++|.+-...
T Consensus       100 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~~a~f~~pe~~  143 (289)
T 3h0u_A          100 SQLPAVTIAKLRGRARGAGSEFLLACDM--RFASRENAILGQPEVG  143 (289)
T ss_dssp             HTCSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECTHHH
T ss_pred             HhCCCCEEEEECCEeehhhHHHHHhCCE--EEEeCCCcEEeCchhh
Confidence            8899999999999999999999999999  999998 998865444

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=96.89  E-value=0.0038  Score=56.87  Aligned_cols=96  Identities=14%  Similarity=0.045  Sum_probs=69.7

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH-------------------------
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------------  169 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG-------------------------  169 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.+-                         
T Consensus        47 ~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (333)
T 3njd_A           47 RITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQAL  126 (333)
T ss_dssp             EEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCTTSTTCHHHHHH
T ss_pred             EEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccccccccccccccccccc
Confidence            3556654     77888889999988888765555454432    2344554321                         


Q ss_pred             --------------------HHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          170 --------------------MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       170 --------------------laIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                                          ..++..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--rias~~a~f~~pe~~  196 (333)
T 3njd_A          127 NHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQ--VIAAADAKIGYPPMR  196 (333)
T ss_dssp             TTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSE--EEECTTCEEECGGGG
T ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCE--EEECCCCeeechhhc
Confidence                                12345677789999999999999999999999999  999999999876554

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=96.88  E-value=0.0016  Score=57.20  Aligned_cols=98  Identities=13%  Similarity=0.037  Sum_probs=70.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH------HHHHHHHhhhCCCeEEEEc
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------MAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG------laIyD~Ir~~k~~V~Tvv~  188 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.+-      ..+...|..++.||.+.+.
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~  100 (256)
T 3pe8_A           21 TLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAIN  100 (256)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEEC
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEEC
Confidence            3556554     678888999999988887665555555432    345554321      1222446677889999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||-  |++.++++|.+....-|
T Consensus       101 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  133 (256)
T 3pe8_A          101 GAAVTGGLELALYCDI--LIASENAKFADTHARVG  133 (256)
T ss_dssp             SEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             CeeechHHHHHHhCCE--EEEcCCCEEECchhhhC
Confidence            9999999999999999  99999999987654433

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=96.88  E-value=0.0021  Score=56.79  Aligned_cols=84  Identities=10%  Similarity=0.046  Sum_probs=66.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH----------------HHHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.+                ...+++.|..++.||.+.+.|.
T Consensus        48 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  127 (263)
T 2j5g_A           48 FTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGA  127 (263)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence            778888889999988887666666666543    66776521                1245667788899999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEE
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMI  217 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMI  217 (246)
                      |. +|.-|+++||-  |++.++++|.+
T Consensus       128 a~-GG~~LalacD~--ria~~~a~f~~  151 (263)
T 2j5g_A          128 AL-LHSEYILTTDI--ILASENTVFQD  151 (263)
T ss_dssp             EC-SCGGGGGGCSE--EEEETTCEECC
T ss_pred             ch-HHHHHHHhCCE--EEEcCCCEEec
Confidence            99 69999999999  99999999876

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=96.86  E-value=0.0064  Score=56.01  Aligned_cols=91  Identities=14%  Similarity=0.187  Sum_probs=71.0

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+     |-||++.+                  ...++..|..++.||.+.+
T Consensus        33 l~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav  112 (353)
T 4hdt_A           33 LTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIM  112 (353)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence            778888999999988887665555555422     34666532                  2346667888899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       113 ~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~iG  146 (353)
T 4hdt_A          113 DGIVMGGGVGVGAHGNV--RVVTDTTKMAMPEVGIG  146 (353)
T ss_dssp             CBEEETHHHHHHTTSSE--EEECTTCEEECCGGGGT
T ss_pred             ECceeecCccccCCcCe--eccchhccccCcccccc
Confidence            99999999999999999  99999999987655444

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=96.84  E-value=0.00083  Score=59.45  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=66.9

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHHH---------------HHHHHHh--
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM---------------AIFDTIR--  177 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aGl---------------aIyD~Ir--  177 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.    .=|-|+++.+-.               .+++.|.  
T Consensus        32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  111 (278)
T 4f47_A           32 IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKG  111 (278)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC----------------------CTTCBTTTTBS
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHh
Confidence            4556554     6788888999988888876555555553    123444443211               1223344  


Q ss_pred             -hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          178 -HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       178 -~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                       .++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       112 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  156 (278)
T 4f47_A          112 RRLKKPLIAAVEGPAIAGGTEILQGTDI--RVAAESAKFGISEAKWS  156 (278)
T ss_dssp             CCCSSCEEEEECSEEETHHHHHHTTCSE--EEEETTCEEECCGGGGT
T ss_pred             cCCCCCEEEEECCEEehHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence             677899999999999999999999999  99999999987665544

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=96.81  E-value=0.00071  Score=59.58  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=74.2

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHH--------------HHHHHHHhhhC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG--------------MAIFDTIRHIR  180 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aG--------------laIyD~Ir~~k  180 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.    .=|.|+++.+-              ..++..|..++
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (265)
T 3qxz_A           19 VLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSASPVQPAAFELR   98 (265)
T ss_dssp             EEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCSCCSSSCGGGSS
T ss_pred             EEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHHHHHHHHHHhCC
Confidence            3555554     7788899999999888876656655553    23556665331              23455688889


Q ss_pred             CCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          181 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       181 ~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus        99 kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  139 (265)
T 3qxz_A           99 TPVIAAVNGHAIGIGMTLALHADI--RILAEEGRYAIPQVRFG  139 (265)
T ss_dssp             SCEEEEECSEEETHHHHHHTTSSE--EEEETTCCEECCGGGGT
T ss_pred             CCEEEEECCEEehHhHHHHHHCCE--EEEcCCCEEECcccccC
Confidence            999999999999999999999999  99999999987665544

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=96.77  E-value=0.008  Score=53.26  Aligned_cols=99  Identities=13%  Similarity=0.034  Sum_probs=72.0

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH--------------------HHHHHH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------------GMAIFD  174 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a--------------------GlaIyD  174 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.=.    |-|+++..                    ...++.
T Consensus        32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
T 3t3w_A           32 TITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSL  111 (279)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence            3556554     678888999999888887655554554322    33455321                    122456


Q ss_pred             HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|.
T Consensus       112 ~l~~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl  159 (279)
T 3t3w_A          112 RWRNVPKPSIAAVQGRCISGGLLLCWPCDL--IIAAEDALFSDPVVLMDI  159 (279)
T ss_dssp             HHHHCSSCEEEEECSEEEGGGHHHHTTSSE--EEEETTCEEECCGGGGTC
T ss_pred             HHHhCCCCEEEEECCeEhHHHHHHHHhCCE--EEecCCCEEeCcHHhcCC
Confidence            778889999999999999999999999999  999999999775544443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.71  E-value=0.0034  Score=61.15  Aligned_cols=89  Identities=20%  Similarity=0.300  Sum_probs=73.9

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++.+.++.+..-+..-+  ...-||...+||||          |....+-.+.+.+...+.|+.+++.|-+++.|++.
T Consensus       339 G~l~~~~~~K~ar~i~~a~--~~~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~  416 (522)
T 1x0u_A          339 GSIDIDAADKAARFIRFCD--AFNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIA  416 (522)
T ss_dssp             GCBCHHHHHHHHHHHHHHH--HTTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHh--hCCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHH
Confidence            5677777776655444323  23679999999999          77788888999999999999999999999999999


Q ss_pred             Hcc----CCCCcEEecCCcEEEEEcCC
Q 025891          199 LSA----GTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       199 l~A----GdkgkR~a~pnS~iMIHqP~  221 (246)
                      .+.    +|.  .+|.|++++.+-.|.
T Consensus       417 ~a~~a~~~D~--v~a~p~A~i~v~gpe  441 (522)
T 1x0u_A          417 MSIKSLGADL--VYAWPTAEIAVTGPE  441 (522)
T ss_dssp             TCCGGGTCSE--EEECTTCEEESSCHH
T ss_pred             hcccccCCCE--EEEeCCCEEEecCHH
Confidence            887    887  899999999987776

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=96.70  E-value=0.0056  Score=53.49  Aligned_cols=100  Identities=12%  Similarity=0.083  Sum_probs=72.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH---------------HHHHHHHHhhh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA---------------GMAIFDTIRHI  179 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a---------------GlaIyD~Ir~~  179 (246)
                      +|.|+-|     ++.++...+.+.|..++. +..+-|.|.=.    |-|+++.+               ...++..|..+
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (254)
T 3isa_A           19 TFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGS   97 (254)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhC
Confidence            3555554     678888889888887765 43444444321    33444321               23456788888


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCC
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG  226 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G  226 (246)
                      +.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|..+
T Consensus        98 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p  142 (254)
T 3isa_A           98 PSLTLALAHGRNFGAGVDLFAACKW--RYCTPEAGFRMPGLKFGLVL  142 (254)
T ss_dssp             SSEEEEEECSEEETHHHHHHHHSSE--EEECTTCEEECCGGGGTCCC
T ss_pred             CCCEEEEECCeEeecchhHHHhCCE--EEEcCCCEEECchhccCccH
Confidence            9999999999999999999999999  99999999987766655443

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=96.67  E-value=0.0051  Score=55.00  Aligned_cols=91  Identities=16%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH--------------------HHHHHHHHhhhCCCeEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA--------------------GMAIFDTIRHIRPDVST  185 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a--------------------GlaIyD~Ir~~k~~V~T  185 (246)
                      ++.++...+.+.|..++.++..+-|.|.=.     |-|+++.+                    ...++..|..++.||.+
T Consensus        32 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  111 (287)
T 3gkb_A           32 IGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIV  111 (287)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            677888888888888876655555555432     34566532                    12467788889999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecC-CcEEEEEcCCCC
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLP-NSRIMIHQPLGG  223 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~p-nS~iMIHqP~~g  223 (246)
                      .+.|.|.++|.-|+++||-  |++.+ +++|.+-...-|
T Consensus       112 aV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~lG  148 (287)
T 3gkb_A          112 KLAGKARGGGAEFVAAADM--AFAAAETAGLGQIEALMG  148 (287)
T ss_dssp             EECSEEETHHHHHHHHSSE--EEEETTTCEEECGGGGGT
T ss_pred             EECCeeehHHHHHHHHCCE--EEEeCCCcEEECcccccC
Confidence            9999999999999999999  99999 999987655544

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=96.66  E-value=0.0047  Score=54.19  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHHH---------------HHHHH-hh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGMA---------------IFDTI-RH  178 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGla---------------IyD~I-r~  178 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+-..               +++.| ..
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (265)
T 3swx_A           21 VIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQ  100 (265)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCC
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence            4556655     678888899998888887665666666543    33677654322               23345 67


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       101 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  143 (265)
T 3swx_A          101 LSKPLLVAVHGKVLTLGIELALAADI--VIADETATFAQLEVNRG  143 (265)
T ss_dssp             CSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             CCCCEEEEEcCeeehHHHHHHHHCCE--EEEcCCCEEECcccccc
Confidence            78899999999999999999999999  99999999987665544

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=96.65  E-value=0.0098  Score=51.24  Aligned_cols=90  Identities=20%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEE----EEeCCCCCHHH--------------HHHHHHHHhhhCCCeEEEEccccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIM----YLNSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLAA  192 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L----~INSPGGsV~a--------------GlaIyD~Ir~~k~~V~Tvv~G~AA  192 (246)
                      ++.++.+.+.+.|..++.+  .+-|.|    ..=|-|+++.+              ...++..|..++.||.+.+.|.|.
T Consensus        29 l~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  106 (232)
T 3ot6_A           29 ISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAV  106 (232)
T ss_dssp             BCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEee
Confidence            6778888888888777753  233333    13355666643              235677888899999999999999


Q ss_pred             hHHHHHHccCCCCcEEecCC-cEEEEEcCCCCC
Q 025891          193 SMGAFLLSAGTKGKRYSLPN-SRIMIHQPLGGA  224 (246)
Q Consensus       193 SaAslIl~AGdkgkR~a~pn-S~iMIHqP~~g~  224 (246)
                      ++|.-|+++||-  |++.++ ++|.+-...-|.
T Consensus       107 GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl  137 (232)
T 3ot6_A          107 AKGAFLLLSADY--RIGVAGPFSIGLNEVQIGM  137 (232)
T ss_dssp             THHHHHHTTSSE--EEEECSSCCEECCTTTTTC
T ss_pred             hHHHHHHHHCCE--EEEeCCCcEEECcccccCC
Confidence            999999999999  999998 798876655554

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=96.64  E-value=0.0069  Score=53.08  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=69.3

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+             ...++..|..++.||.+.+.|.|.+
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  108 (258)
T 4fzw_A           29 LNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALG  108 (258)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEECSEEET
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEcCccee
Confidence            677888888888888876554444443211    23455432             2357788999999999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +|.-|+++||-  |++.++++|.+-...-|
T Consensus       109 gG~~lalacD~--ria~~~a~f~~pe~~~G  136 (258)
T 4fzw_A          109 AGCELALLCDV--VVAGENARFGLPEITLG  136 (258)
T ss_dssp             HHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             eeeEeecccce--EEECCCCEEECcccCCC
Confidence            99999999999  99999999987665544

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=96.57  E-value=0.0025  Score=55.72  Aligned_cols=91  Identities=9%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC----CCCCHHHHH---------------HHHHHH-hhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS----PGGSVTAGM---------------AIFDTI-RHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS----PGGsV~aGl---------------aIyD~I-r~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=+.    -|+++.+-.               .++..| ..++.||.+.+.|.
T Consensus        36 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~  115 (258)
T 3lao_A           36 FDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGT  115 (258)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            6778888898888888876656666665443    366654322               234456 77788999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       116 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  146 (258)
T 3lao_A          116 CWTAGIELMLNADI--AVAARGTRFAHLEVLRG  146 (258)
T ss_dssp             EETHHHHHHHTSSE--EEEETTCEEECGGGGTC
T ss_pred             eEhHHHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence            99999999999999  99999999987655433

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=96.49  E-value=0.0067  Score=59.81  Aligned_cols=89  Identities=11%  Similarity=0.059  Sum_probs=70.2

Q ss_pred             cChhHHHHHHHHHHhhhhc-CCCCCeEEEE-----eCCCCCHHHH---------------HHHHHHH----hhhCCCeEE
Q 025891          131 VEDDMANIIVAQLLYLDAV-DPNKDIIMYL-----NSPGGSVTAG---------------MAIFDTI----RHIRPDVST  185 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~-d~~k~I~L~I-----NSPGGsV~aG---------------laIyD~I----r~~k~~V~T  185 (246)
                      ++.++...+.+.|..++.+ +..+-|.|.=     -|.|+++.+-               ..+++.|    ..++.||.+
T Consensus        55 Ls~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIA  134 (556)
T 2w3p_A           55 YDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLA  134 (556)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            5667788888888888776 6567777765     2678887431               2355667    888999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecCC--cEEEEEcCC
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPL  221 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~pn--S~iMIHqP~  221 (246)
                      .+.|.|.++|.-|+++||.  |++.++  ++|.+-...
T Consensus       135 AVnG~AlGGGleLALACD~--rIAse~~~A~FglPEv~  170 (556)
T 2w3p_A          135 AVNGACAGGGYELALACDE--IYLVDDRSSSVSLPEVP  170 (556)
T ss_dssp             EECSEEETHHHHHHHHSSE--EEEECSSSCEEECCHHH
T ss_pred             EECCeechhhHHHHHhCCE--EEEcCCCCcEEeccccc
Confidence            9999999999999999999  999999  998865444

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=96.44  E-value=0.0077  Score=56.67  Aligned_cols=98  Identities=16%  Similarity=0.130  Sum_probs=71.8

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC-----CCCCHHHH----------------------HH
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-----PGGSVTAG----------------------MA  171 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS-----PGGsV~aG----------------------la  171 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=..     -||++.+-                      ..
T Consensus        54 ~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (407)
T 3ju1_A           54 VVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYR  133 (407)
T ss_dssp             EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHH
Confidence            3556554     6778888898888888765544444444332     25664321                      12


Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus       134 l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lG  183 (407)
T 3ju1_A          134 LDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASH--KVVTETSRIAMPEVTIG  183 (407)
T ss_dssp             HHHHHHTCSSCEEEECCSEEETHHHHHHHHCSE--EEECTTCEEECGGGGGT
T ss_pred             HHHHHHHCCCCEEEEECCccccCcchHHhcCCE--EEEcCCCEEeChHhhcC
Confidence            455678889999999999999999999999999  99999999987665544

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=96.43  E-value=0.0024  Score=57.44  Aligned_cols=96  Identities=14%  Similarity=0.066  Sum_probs=67.1

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH-----------------------H
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-----------------------A  171 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl-----------------------a  171 (246)
                      +|.|+-|     ++.++...|.+.|..++.++..+-|.|.=.    |-|+++.+-.                       .
T Consensus        42 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (298)
T 3qre_A           42 IITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGER  121 (298)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------------------C
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHH
Confidence            3556553     678888889888888887655555555321    3344442211                       1


Q ss_pred             HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      ++..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...
T Consensus       122 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~  169 (298)
T 3qre_A          122 PPHFVTMLRKPVIAAINGPCVGIGLTQALMCDV--RFAAAGAKFAAVFAR  169 (298)
T ss_dssp             CTTGGGGSSSCEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECCCCH
T ss_pred             HHHHHHhCCCCEEEEECCceeecchHHHhhCCE--EEEcCCCEEECcccc
Confidence            233566778899999999999999999999999  999999998875544

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=96.35  E-value=0.0042  Score=54.66  Aligned_cols=98  Identities=13%  Similarity=0.053  Sum_probs=69.4

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHHHH----------------------H
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGMA----------------------I  172 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aGla----------------------I  172 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.    .=|-|+++.+-..                      +
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (274)
T 3tlf_A           23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEG  102 (274)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTT
T ss_pred             EEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            3555544     6778888899988888876655555553    2245666643222                      2


Q ss_pred             HHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       173 yD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +..|..++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       103 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  151 (274)
T 3tlf_A          103 TPPFRTMAKPVLTAVNGICCGAGMDWVTTTDI--VIASEQATFFDPHVSIG  151 (274)
T ss_dssp             CCCTTSCCSCEEEEECSEEEGGGHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            33456667899999999999999999999999  99999999987655444

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=96.34  E-value=0.017  Score=51.24  Aligned_cols=96  Identities=19%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHH---------------HHHHHHHHHhhh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT---------------AGMAIFDTIRHI  179 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~---------------aGlaIyD~Ir~~  179 (246)
                      +|.|+-|     ++.++...+.+.|..++  +..+-|.|.=+    |-|+++.               ....+++.|..+
T Consensus        28 ~itlnrP~~~Nal~~~~~~~L~~al~~~d--~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  105 (275)
T 3hin_A           28 TIGLNRPKKRNALNDGLMAALKDCLTDIP--DQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYC  105 (275)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHTSSCC--TTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHhC--cCceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence            3556554     67777888877776662  33343433321    3344442               223567788889


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus       106 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  147 (275)
T 3hin_A          106 RVPVIAALKGAVIGGGLELACAAHI--RVAEASAYYALPEGSRG  147 (275)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             CCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEECchhccC
Confidence            9999999999999999999999999  99999999987766555

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=96.34  E-value=0.019  Score=52.89  Aligned_cols=92  Identities=15%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHHH------------------HHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG------------------MAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~aG------------------laIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...+.+.|..++.++..+-|.|.=.     |-||++.+-                  ..++..|..++.||.+.+
T Consensus        30 l~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  109 (363)
T 3bpt_A           30 LTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALI  109 (363)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            677888888888888877655555555432     345665321                  134457788899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .|.|.++|.-|+++||-  |++.++++|.+-....|.
T Consensus       110 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl  144 (363)
T 3bpt_A          110 HGITMGGGVGLSVHGQF--RVATEKCLFAMPETAIGL  144 (363)
T ss_dssp             CSEEETHHHHTTTTSSE--EEECTTCEEECCGGGTTS
T ss_pred             CCEEehHHHHHHHhCCE--EEEcCCeEEeCCccccCC
Confidence            99999999999999999  999999999876665553

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=96.33  E-value=0.027  Score=50.65  Aligned_cols=92  Identities=10%  Similarity=-0.004  Sum_probs=64.5

Q ss_pred             ccChhHHHHHHHHHHhhhhc-----CCCCCeEEEEe----CCCCCHHHHH----------------HHHHHHhh------
Q 025891          130 PVEDDMANIIVAQLLYLDAV-----DPNKDIIMYLN----SPGGSVTAGM----------------AIFDTIRH------  178 (246)
Q Consensus       130 ~Idd~~A~~iiaqLl~L~~~-----d~~k~I~L~IN----SPGGsV~aGl----------------aIyD~Ir~------  178 (246)
                      .++.++...+.+.|..++.+     +..+-|.|.=.    |-|+++.+-.                .+++.++.      
T Consensus        59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  138 (305)
T 3m6n_A           59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLG  138 (305)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            38889999999988888763     33443433211    3345553211                23333433      


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus       139 ~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  181 (305)
T 3m6n_A          139 ARAHSIALVQGNALGGGFEAALSCHT--IIAEEGVMMGLPEVLFD  181 (305)
T ss_dssp             TTCEEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             CCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEECchhccC
Confidence            47899999999999999999999999  99999999987655444

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.31  E-value=0.012  Score=57.41  Aligned_cols=90  Identities=19%  Similarity=0.305  Sum_probs=69.2

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++++.+.....-+...+  ...-||...+|+||          |...++-.+.+.+...+.|+.+++.|.|+|.|++.
T Consensus       344 G~~~~~~~~Kaar~i~~a~--~~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~a  421 (527)
T 1vrg_A          344 GVLDIDSSDKAARFIRFLD--AFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIA  421 (527)
T ss_dssp             GCBCHHHHHHHHHHHHHHH--HTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh--hcCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHH
Confidence            5577776655543332222  23679999999999          44566677888888889999999999999999988


Q ss_pred             Hcc----CCCCcEEecCCcEEEEEcCCC
Q 025891          199 LSA----GTKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       199 l~A----GdkgkR~a~pnS~iMIHqP~~  222 (246)
                      ++.    +|.  .+|.|++++.+-.|.+
T Consensus       422 m~~~~~~~d~--~~a~p~a~~~Vm~peg  447 (527)
T 1vrg_A          422 MGSKHLGADM--VLAWPSAEIAVMGPEG  447 (527)
T ss_dssp             TTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred             hcCCCCCCCE--EEEcCCCeEEecCHHH
Confidence            876    776  8999999998766654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.24  E-value=0.012  Score=57.25  Aligned_cols=90  Identities=16%  Similarity=0.244  Sum_probs=70.9

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++++.+.....-+...+  ...-||...+|+||          |...++-.+.+.+...+.|+.|++.|.++|.|++.
T Consensus       340 G~~~~~~a~Kaar~i~~~~--~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~a  417 (523)
T 1on3_A          340 GCLDINASDKAAEFVNFCD--SFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLA  417 (523)
T ss_dssp             GCBCHHHHHHHHHHHHHHH--HTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHH--hcCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHH
Confidence            5677776555443332223  23679999999998          66788888899999999999999999999999998


Q ss_pred             Hcc----CCCCcEEecCCcEEEEEcCCC
Q 025891          199 LSA----GTKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       199 l~A----GdkgkR~a~pnS~iMIHqP~~  222 (246)
                      ++.    +|.  .+|.|++++.+-.|.+
T Consensus       418 m~~~~~~~d~--~~a~p~a~~~Vm~peg  443 (523)
T 1on3_A          418 MCNRDLGADA--VYAWPSAEIAVMGAEG  443 (523)
T ss_dssp             TTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred             hcccCCCCCE--EEEcCCCeEEecCHHH
Confidence            887    666  8999999998766654

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=96.23  E-value=0.0062  Score=53.65  Aligned_cols=98  Identities=12%  Similarity=0.052  Sum_probs=71.6

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHHHHHH----------H--HH--Hhhh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAGMAI----------F--DT--IRHI  179 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~aGlaI----------y--D~--Ir~~  179 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=     =|-|+++.+-...          +  ..  +..+
T Consensus        21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (267)
T 3r9t_A           21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFI  100 (267)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGTTTCCC
T ss_pred             EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHHHHHhC
Confidence            4666665     77888899999998888766566666633     3446676542210          0  11  1256


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       101 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  142 (267)
T 3r9t_A          101 DKPTIAAVNGTALGGGTELALASDL--VVADERAQFGLPEVKRG  142 (267)
T ss_dssp             SSCEEEEECSEECTHHHHHHHHSSE--EEEETTCEECCGGGGTT
T ss_pred             CCCEEEEECCEEEhHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            7899999999999999999999999  99999999987665544

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=96.22  E-value=0.0046  Score=54.44  Aligned_cols=96  Identities=15%  Similarity=0.067  Sum_probs=68.5

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHHH-------------HHHHHHhhhCC
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAGM-------------AIFDTIRHIRP  181 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aGl-------------aIyD~Ir~~k~  181 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.+-.             .++..+..++.
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k  102 (262)
T 3r9q_A           23 TVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSK  102 (262)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSS
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCC
Confidence            4556655     77888889999888888765555555532    23445543211             12223456778


Q ss_pred             CeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       182 ~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      ||.+.+.|.|.++|.-|+++||-  |++.++++|.+-...
T Consensus       103 PvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  140 (262)
T 3r9q_A          103 PVIAAISGHAVAGGIELALWCDL--RVVEEDAVLGVFCRR  140 (262)
T ss_dssp             CEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECTHHH
T ss_pred             CEEEEECCeeehhhhHHHHhCCE--EEEeCCCEEecchhc
Confidence            99999999999999999999999  999999998765433

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=96.22  E-value=0.016  Score=51.23  Aligned_cols=90  Identities=10%  Similarity=0.018  Sum_probs=64.7

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-----------------HHHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-----------------GlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++.++...+.+.|..++.+ ..+-|.|.=.    |-|+++.+                 ...++..|..++.||.+.+.|
T Consensus        31 l~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  109 (267)
T 3hp0_A           31 INDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRG  109 (267)
T ss_dssp             BCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            5677777777777777653 2333332211    22344432                 234677788889999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       110 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  141 (267)
T 3hp0_A          110 KVNAGGLGFVSATDI--AIADQTASFSLSELLFG  141 (267)
T ss_dssp             EEETTHHHHHHHSSE--EEECTTCEEECCGGGGT
T ss_pred             EEeehHHHHHHhCCE--EEEcCCCEEECchhccC
Confidence            999999999999999  99999999987665544

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.13  E-value=0.015  Score=56.89  Aligned_cols=90  Identities=14%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++.+.+..... +..+-.. -.-||...+|+||          |....+-.+.+++...+.|+.|++.|.+.|.|++.
T Consensus       352 G~l~~~~a~Kaar-fi~lcd~-~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~a  429 (531)
T 3n6r_B          352 GCLDIDSSRKAAR-FVRFCDA-FEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVV  429 (531)
T ss_dssp             GCBCHHHHHHHHH-HHHHHHH-TTCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHhhc-cCCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhh
Confidence            6677776554433 3223222 3579999999999          45677788899999999999999999999999988


Q ss_pred             Hcc----CCCCcEEecCCcEEEEEcCCC
Q 025891          199 LSA----GTKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       199 l~A----GdkgkR~a~pnS~iMIHqP~~  222 (246)
                      +++    ++.  .+|.|++++.+-.|.+
T Consensus       430 m~~~~~~~d~--~~awp~A~i~Vm~peg  455 (531)
T 3n6r_B          430 MSSKHLRADF--NYAWPTAEVAVMGAKG  455 (531)
T ss_dssp             TTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred             ccCccCCCCe--EEEcCCceEecCCHHH
Confidence            886    776  8999999998776653

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=96.09  E-value=0.013  Score=51.49  Aligned_cols=97  Identities=20%  Similarity=0.074  Sum_probs=66.2

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHHHHH-----------HHHHhhhCCCe
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAGMAI-----------FDTIRHIRPDV  183 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aGlaI-----------yD~Ir~~k~~V  183 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.+-...           +..+.. +.||
T Consensus        27 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~-~kPv  105 (265)
T 3qxi_A           27 IITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFTERPP-AKPL  105 (265)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETTTEETTTTSCC-SSCE
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhhhhhhHHHhhC-CCCE
Confidence            4556554     67888888988888888765555555432    2455555442110           112222 6789


Q ss_pred             EEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          184 STVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       184 ~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .+.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus       106 IAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  143 (265)
T 3qxi_A          106 IAAVEGYALAGGTELALATDL--IVAARDSAFGIPEVKRG  143 (265)
T ss_dssp             EEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             EEEECCceeHHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            999999999999999999999  99999999987665544

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=96.08  E-value=0.013  Score=57.91  Aligned_cols=95  Identities=8%  Similarity=0.085  Sum_probs=73.2

Q ss_pred             cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccc
Q 025891          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAA  192 (246)
Q Consensus       123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AA  192 (246)
                      ++...+|.++++.+.....-+..-+.  -.-||...+|+||          |-...+-.+.+++...+.|+.|++.|.+.
T Consensus       379 ~~~~~~G~l~~~~a~Kaarfi~~c~~--~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~  456 (587)
T 1pix_A          379 GSVGIGGKLYRQGLVKMNEFVTLCAR--DRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGT  456 (587)
T ss_dssp             TCCEETTEECHHHHHHHHHHHHHHHH--TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEE
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhhc--CCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence            34456788988876554433322232  3679999999999          56778888999999999999999999999


Q ss_pred             hHHHHHHcc----C--CCCcEEecCCcEEEEEcCC
Q 025891          193 SMGAFLLSA----G--TKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       193 SaAslIl~A----G--dkgkR~a~pnS~iMIHqP~  221 (246)
                      |+|++.+++    +  +.  .+|.|++++.+-.|.
T Consensus       457 Ggg~~am~~~~~~~~~d~--~~a~p~A~~~Vm~pe  489 (587)
T 1pix_A          457 AAAHYVLGGPQGNDTNAF--SIGTAATEIAVMNGE  489 (587)
T ss_dssp             TTHHHHTTCTTCTTTEEE--EEECTTCEEESSCHH
T ss_pred             cHHHHHhcCcccCcccce--eeeccCCeEecCCHH
Confidence            999888876    4  55  899999999865554

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=96.05  E-value=0.0093  Score=52.21  Aligned_cols=97  Identities=18%  Similarity=0.130  Sum_probs=69.8

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHHHH----------HHHHHhhhCCCeE
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGMA----------IFDTIRHIRPDVS  184 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aGla----------IyD~Ir~~k~~V~  184 (246)
                      +|.|+-|     ++.++.+.+.+.|..++.++..+-|.|.    .=|-|+++.+-..          -+..+ .++.||.
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~kPvI   97 (256)
T 3trr_A           19 LITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTNV-PPRKPII   97 (256)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEETTSSS-CCSSCEE
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhhhHHHh-cCCCCEE
Confidence            4556554     6778888898888888876656655553    2356667654321          01223 5567999


Q ss_pred             EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.+.|.|.++|.-|+++||-  |++.++++|.+-....|
T Consensus        98 Aav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  134 (256)
T 3trr_A           98 AAVEGFALAGGTELVLSCDL--VVAGRSAKFGIPEVKRG  134 (256)
T ss_dssp             EEECSBCCTHHHHHHHTSSE--EEEETTCEECCCGGGGT
T ss_pred             EEECCeeeechhHHHHhCCE--EEECCCCEEEehhhccC
Confidence            99999999999999999999  99999999976554444

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=96.04  E-value=0.033  Score=53.25  Aligned_cols=92  Identities=11%  Similarity=0.003  Sum_probs=67.6

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-------------CCCCCHHHHH-------------------HHHHHH--
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-------------SPGGSVTAGM-------------------AIFDTI--  176 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-------------SPGGsV~aGl-------------------aIyD~I--  176 (246)
                      ++.++...+.+.|..++.++..+-|+|.=+             |-|+++.+-.                   .+++.|  
T Consensus       191 Ls~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  270 (440)
T 2np9_A          191 EDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLT  270 (440)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHHCEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHHHHHHHHHHHHHh
Confidence            677888889888888887665666666542             3345553311                   122222  


Q ss_pred             ----------hhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          177 ----------RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       177 ----------r~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                                ..++.||.+.|.|.|.++|.-|+++||-  |++.++++|.+-....|.
T Consensus       271 ~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDi--rIAae~A~Fglpev~lGl  326 (440)
T 2np9_A          271 NDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDR--VLASSDAYFSLPAAKEGI  326 (440)
T ss_dssp             CSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSE--EEEETTCEEECCCTTTCC
T ss_pred             hcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCE--EEEcCCCEEECchhccCc
Confidence                      2567899999999999999999999999  999999999887766553

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=95.98  E-value=0.022  Score=55.75  Aligned_cols=90  Identities=16%  Similarity=0.218  Sum_probs=68.2

Q ss_pred             cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (246)
Q Consensus       129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI  198 (246)
                      |.++.+.+.....-+..-+.  -.-||...+|+||          |-...+-.+.+++...+.|+.|++.|.+.|+|.+.
T Consensus       346 G~l~~~~a~Kaarfi~~c~~--~~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~~a  423 (530)
T 3iav_A          346 GCLDITASEKAARFVRTCDA--FNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYVV  423 (530)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh--cCCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHH
Confidence            67787766544333322222  2579999999998          55677778899999999999999999999977766


Q ss_pred             Hcc----CCCCcEEecCCcEEEEEcCCC
Q 025891          199 LSA----GTKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       199 l~A----GdkgkR~a~pnS~iMIHqP~~  222 (246)
                      ++.    ++.  .+|.|++++.+-.|.+
T Consensus       424 m~~~~~~~d~--~~awp~a~~~Vm~~eg  449 (530)
T 3iav_A          424 MGSKHLGADL--NLAWPTAQIAVMGAQG  449 (530)
T ss_dssp             TTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred             hcCCCCCCCE--EEEcCCceEecCCHHH
Confidence            654    566  8999999998766653

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.81  E-value=0.03  Score=55.46  Aligned_cols=99  Identities=8%  Similarity=0.076  Sum_probs=73.0

Q ss_pred             CcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEcccc
Q 025891          122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLA  191 (246)
Q Consensus       122 ~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~A  191 (246)
                      +++..++|.++++.+.....-+..-+.  -.-||...+|+||          |-...+-.+..++...+.|+.|++.|.+
T Consensus       380 ~~~~~~~G~l~~~~a~Kaarfi~lcd~--f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~  457 (588)
T 3gf3_A          380 QNSVGIGGKLYRQGLIKMNEFVTLCAR--DRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKA  457 (588)
T ss_dssp             SSCEEETTEECHHHHHHHHHHHHHHHH--TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSEE
T ss_pred             hhhhccCCCcCHHHHHHHHHHHHHhhh--cCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCc
Confidence            455667788998875554332222232  2569999999998          6678888999999999999999999999


Q ss_pred             chHHHHHHcc---CC-CCcEEecCCcEEEEEcCCC
Q 025891          192 ASMGAFLLSA---GT-KGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       192 ASaAslIl~A---Gd-kgkR~a~pnS~iMIHqP~~  222 (246)
                      .++|.+.+++   ++ ....+|.|++++.+-.|.+
T Consensus       458 ~Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEg  492 (588)
T 3gf3_A          458 SAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGET  492 (588)
T ss_dssp             ETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHH
T ss_pred             cHHHHHHhcccccCCccceEEECCCceEEeCCHHH
Confidence            9988877765   22 0136789999998765543

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.69  E-value=0.039  Score=55.17  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=66.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.+                  ...+++.|..++.||.+.+.
T Consensus        32 l~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  111 (715)
T 1wdk_A           32 FNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAIN  111 (715)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            46677778888887777665555555442    123344421                  23456678888999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.++|.-|+++||.  |++.++++|.+-...-|
T Consensus       112 G~a~GgG~elalacD~--ria~~~a~fglpev~lG  144 (715)
T 1wdk_A          112 GIALGGGLEMCLAADF--RVMADSAKIGLPEVKLG  144 (715)
T ss_dssp             SCEETHHHHHHHTSSE--EEEETTCEEECGGGGGT
T ss_pred             CEeeHHHHHHHHHCCE--EEEeCCCEEeChhhccC
Confidence            9999999999999999  99999999887665544

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=95.51  E-value=0.069  Score=53.97  Aligned_cols=96  Identities=19%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCH---------HHHHHHHHHHhhhCCCeE
Q 025891          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSV---------TAGMAIFDTIRHIRPDVS  184 (246)
Q Consensus       124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV---------~aGlaIyD~Ir~~k~~V~  184 (246)
                      +|.|+-|    ++.++.+.+.+.|..++.++..+-|.|  -+-|      +++         .+...+++.|..++.||.
T Consensus        33 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aGaDl~~~~~~~~~~~~~~~~~~i~~~~kPvI  110 (742)
T 3zwc_A           33 MIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVI--CGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVL  110 (742)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEE--EESTTCSBCCBCSSSCCSSCSCSHHHHHHHHHHHCSSCEE
T ss_pred             EEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeEEEE--ECCCCccccCcChHhhhccChhHHHHHHHHHHHhCCCCEE
Confidence            4556554    778888889888888887655554444  3333      232         234568899999999999


Q ss_pred             EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.+.|.|.++|.-|+++||-  |++.++++|.+-...-|
T Consensus       111 Aai~G~a~GGG~elalacD~--ria~~~a~fg~pev~lG  147 (742)
T 3zwc_A          111 AAIQGVALGGGLELALGCHY--RIANAKARVGLPEVTLG  147 (742)
T ss_dssp             EEECSEEETHHHHHHHTSSE--EEEETTCEEECGGGGGT
T ss_pred             EEECccchHHHHHHHHhcCE--EEEcCCCEEECcccCcc
Confidence            99999999999999999999  99999999886555544

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=95.50  E-value=0.03  Score=50.58  Aligned_cols=90  Identities=13%  Similarity=0.080  Sum_probs=64.1

Q ss_pred             ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH-------HHHHHhh---hCCCeEEEEccccchHHHH
Q 025891          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-------IFDTIRH---IRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla-------IyD~Ir~---~k~~V~Tvv~G~AASaAsl  197 (246)
                      +|.++....+.+...+..-+.  ..-||...++|+|....+|..       |..++..   ...|+.+++.|-+.+.++.
T Consensus       134 gGs~g~~~~~K~~r~ie~A~~--~~lPlI~l~dsgGar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~a  211 (285)
T 2f9i_B          134 MGSMGSVIGEKICRIIDYCTE--NRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSA  211 (285)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHH--TTCCEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHT
T ss_pred             cCcCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHHH
Confidence            455677777777654443222  257999999999998877644       3334444   3579999999999887766


Q ss_pred             H-HccCCCCcEEecCCcEEEEEcCC
Q 025891          198 L-LSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       198 I-l~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      . ++.||.  .+|.|+|.+.+--|.
T Consensus       212 s~a~~~D~--i~a~p~A~i~~aGP~  234 (285)
T 2f9i_B          212 SFASVGDI--NLSEPKALIGFAGRR  234 (285)
T ss_dssp             TGGGCCSE--EEECTTCBEESSCHH
T ss_pred             HhhhCCCE--EEEeCCcEEEEcCHH
Confidence            6 456776  889999999876654

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=94.80  E-value=0.1  Score=51.40  Aligned_cols=90  Identities=17%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl  197 (246)
                      .|.++.+.+.....-+..-+.  -.-||...+|+||          |-...+-.+..++...+.|+.|++.|-+.++|++
T Consensus       365 ~G~l~~~~a~Kaarfi~~c~~--~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~  442 (555)
T 3u9r_B          365 NGILFAEAAQKGAHFIELACQ--RGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNY  442 (555)
T ss_dssp             CSSBCHHHHHHHHHHHHHHHH--HTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHH
T ss_pred             CCccCHHHHHHHHHHHHHHhc--CCCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhH
Confidence            467888776554332222232  2579999999999          5567778888999999999999999999999888


Q ss_pred             HHcc----CCCCcEEecCCcEEEEEcCC
Q 025891          198 LLSA----GTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       198 Il~A----GdkgkR~a~pnS~iMIHqP~  221 (246)
                      .++.    +|.  .+|.|++++.+-.|.
T Consensus       443 am~~~~~~~d~--~~a~p~A~i~Vmgpe  468 (555)
T 3u9r_B          443 GMCGRAYDPRF--LWMWPNARIGVMGGE  468 (555)
T ss_dssp             HTTCGGGCCSE--EEECTTCEEESSCHH
T ss_pred             hhcCccCCCCe--EEEcCCcEEEcCCHH
Confidence            8774    566  899999999865544

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.28  E-value=0.028  Score=56.28  Aligned_cols=91  Identities=20%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++.+.+.+.|..++.++..+-|.|.=    =|-|+++.+                  ...+++.|..++.||.+.+.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  110 (725)
T 2wtb_A           31 LSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAID  110 (725)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCCEEEEEESSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEEEC
Confidence            56677778888887777655455454432    133444422                  11122345566789999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|.+.|.-|+++||.  |++.++++|.+-...-|
T Consensus       111 G~a~GgG~elalacD~--ria~~~a~fglpev~lG  143 (725)
T 2wtb_A          111 GLALGGGLELAMACHA--RISAPAAQLGLPELQLG  143 (725)
T ss_dssp             SEEETHHHHHHHHSSE--EEECTTCEEECCGGGGT
T ss_pred             CccCcccHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence            9999999999999999  99999999877655544

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=94.00  E-value=0.19  Score=51.28  Aligned_cols=101  Identities=14%  Similarity=0.076  Sum_probs=71.4

Q ss_pred             hccCcEEE-eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEE
Q 025891          119 LFQHRIIR-CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       119 L~~~RIIf-L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv  187 (246)
                      ..+++++. .+|.++++.+.... ++..+-...-.-||...+|+||          |-..+|-.+.+++...+.|+.|++
T Consensus       436 ~~~e~~~~~~gG~l~pe~a~KaA-rfI~lcd~~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI  514 (758)
T 3k8x_A          436 NSAETLIQEPGQVWHPNSAFKTA-QAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYI  514 (758)
T ss_dssp             TCCCEEEEECTTEECHHHHHHHH-HHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             chhhhHHhhcCCCCCHHHHHHHH-HHHHHhhhccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEE
Confidence            34556555 46899998766554 3332222213579999999998          667888899999999999999999


Q ss_pred             c--cccchHHHHHHcc----CCCCcEEecCCcEEEEEcCC
Q 025891          188 V--GLAASMGAFLLSA----GTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       188 ~--G~AASaAslIl~A----GdkgkR~a~pnS~iMIHqP~  221 (246)
                      .  |.+.+.|. +.++    ++....+|.|++++.+-.|.
T Consensus       515 ~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~isVM~pE  553 (758)
T 3k8x_A          515 PPTGELRGGSW-VVVDPTINADQMEMYADVNARAGVLEPQ  553 (758)
T ss_dssp             CTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEESSCHH
T ss_pred             ecCCccchHHH-HHhCcccCCCHHHHhcCCCCEEEccCHH
Confidence            9  99877555 4444    22222789999998865554

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=93.17  E-value=0.24  Score=50.77  Aligned_cols=101  Identities=19%  Similarity=0.218  Sum_probs=73.5

Q ss_pred             hccCcEEE-eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEE
Q 025891          119 LFQHRIIR-CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       119 L~~~RIIf-L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv  187 (246)
                      -.++++.. ++|.++++.+.....-+...+  .-.-||...+|+||          |-..+|-.+.+++...+.|+.|++
T Consensus       451 ~~~e~~~~~~gG~l~~~~a~KaarfI~~cd--~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI  528 (793)
T 2x24_A          451 DSEAKIIQQAGQVWFPDSAYKTAQAIKDFN--REKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYI  528 (793)
T ss_dssp             TCCCEEEEECTTEECHHHHHHHHHHHHHHH--TTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             chhhhhhhhcCCcccHHHHHHHHHHHHHhc--cCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEE
Confidence            34556654 478999987665544443333  33679999999999          667888999999999999999999


Q ss_pred             --ccccchHHHHHHccCCCC--c--EEecCCcEEEEEcCCC
Q 025891          188 --VGLAASMGAFLLSAGTKG--K--RYSLPNSRIMIHQPLG  222 (246)
Q Consensus       188 --~G~AASaAslIl~AGdkg--k--R~a~pnS~iMIHqP~~  222 (246)
                        .|.+.+ |++++++..-+  .  .+|.|++++.+-.|.+
T Consensus       529 ~r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~~~VM~pEg  568 (793)
T 2x24_A          529 PPYAEVRG-GSWAVMDTSINPLCIEMYADRESRASVLEPEG  568 (793)
T ss_dssp             CTTCEEEH-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHH
T ss_pred             ecCCcccc-hhHHhhhcccCccHHHHhhhccCEEEecCHHH
Confidence              788765 66666643222  1  3899999998766654

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=88.24  E-value=0.97  Score=44.69  Aligned_cols=90  Identities=11%  Similarity=0.086  Sum_probs=65.0

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHH----------H---HHHhhhCCCeEEEEccccch
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI----------F---DTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaI----------y---D~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      .+|.+.+...+.+...+.. ..+. .-|+...++|+|..+.++...          +   ..+...+.|+.+++.|-|++
T Consensus       117 ~gGs~g~~~~~Ki~r~~e~-A~~~-~lPvI~l~dSgGArlqe~~~~l~~~~~~g~i~~~~~~ls~~giP~Isvv~G~~~G  194 (587)
T 1pix_A          117 LAGAWVPGQAECLLRASDT-AKTL-HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPA  194 (587)
T ss_dssp             TTTEECTTHHHHHHHHHHH-HHHH-TCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEET
T ss_pred             ccCCCCHHHHHHHHHHHHH-HHHc-CCCEEEEEeCCCCCccccchhccccccHHHHHHHHHHHhCCCCCEEEEEecCCcH
Confidence            4567777777777655442 2222 568999999999987665553          2   23444467999999999999


Q ss_pred             HHHHHHccCCCCcEEecC-CcEEEEEcCC
Q 025891          194 MGAFLLSAGTKGKRYSLP-NSRIMIHQPL  221 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~p-nS~iMIHqP~  221 (246)
                      .+++. +.++.  .+|.+ ++.+.+--|.
T Consensus       195 Gga~~-a~~d~--vim~e~~a~i~~~GP~  220 (587)
T 1pix_A          195 GGGYH-SISPT--VIIAHEKANMAVGGAG  220 (587)
T ss_dssp             HHHHH-HHSSS--EEEEETTCEEESCCCT
T ss_pred             HHHHH-HhcCc--eEEecCCcEEEecCHH
Confidence            99999 77877  66665 5999887774

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=86.69  E-value=1.7  Score=43.11  Aligned_cols=91  Identities=12%  Similarity=0.045  Sum_probs=63.6

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHH--HHH--------HHHHHH---hhhCCCeEEEEccccch
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT--AGM--------AIFDTI---RHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~--aGl--------aIyD~I---r~~k~~V~Tvv~G~AAS  193 (246)
                      .+|.+.+...+.+...+.. ..+. .-|+...++|+|..+.  ++.        .|+..+   .....|+.+++.|-|++
T Consensus       118 ~gGS~g~~~~~Ki~Ra~e~-A~~~-~lPvI~l~dSgGArl~~qe~~~~~l~~~g~if~~~~~ls~~~iP~Isvv~Gp~~g  195 (588)
T 3gf3_A          118 MAGAWVPGQAENLIRCSDA-AKMM-HLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPA  195 (588)
T ss_dssp             GGGCBCTTHHHHHHHHHHH-HHHH-TCCEEEEECCCCBCGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEET
T ss_pred             cCCCCCHHHHHHHHHHHHH-HHHc-CCCEEEEEcCCCcCcccccccccchhhHHHHHHHHHHHhcCCCCEEEEEeCCCCc
Confidence            4577778777777655442 2222 4689999999998873  321        123322   23357999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .+++..+.++-  .++.+++.+.+--|.
T Consensus       196 GgAy~a~~~~v--im~~~~a~i~~aGP~  221 (588)
T 3gf3_A          196 GGGYHSISPTI--LIAHQDANMAVGGAG  221 (588)
T ss_dssp             HHHHHHHSSSE--EEEETTCEEESSCCC
T ss_pred             hhhhHhhCCeE--EEEECCcEEEecChh
Confidence            99988777765  677889999887775

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=85.89  E-value=0.73  Score=44.87  Aligned_cols=90  Identities=19%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHH--------HHHHhh-hCCCeEEEEccccchHHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI--------FDTIRH-IRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaI--------yD~Ir~-~k~~V~Tvv~G~AASaAsl  197 (246)
                      ++|.+.+...+.+...+..-. + ..-|+..+++|.|..+.++...        +...+. -..|+.+++.|-|.+.+++
T Consensus       110 ~gGS~g~~~~~Ki~r~~e~A~-~-~~lPvI~l~dSgGAR~qeg~~~l~g~~~~~~~~~~~s~~iP~Isvv~Gp~~GG~a~  187 (527)
T 1vrg_A          110 MGGSLGEMHAKKIVKLLDLAL-K-MGIPVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVY  187 (527)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHH-H-HTCCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEBGGGGH
T ss_pred             cCccccHHHHHHHHHHHHHHH-H-cCCCEEEEECCCCCCccchhHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCchHHHH
Confidence            566677777777776554222 2 2568999999999887655442        222221 2368999999999999999


Q ss_pred             HHccCCCCcEEecCC-cEEEEEcC
Q 025891          198 LLSAGTKGKRYSLPN-SRIMIHQP  220 (246)
Q Consensus       198 Il~AGdkgkR~a~pn-S~iMIHqP  220 (246)
                      .++.||.  .+|.|+ +.+.+--|
T Consensus       188 s~al~D~--vi~~~~~a~i~~aGP  209 (527)
T 1vrg_A          188 SPALTDF--IVMVDQTARMFITGP  209 (527)
T ss_dssp             HHHHSSE--EEEETTTCBCBSSCH
T ss_pred             HHHcCCe--EEEecCceEEEecCH
Confidence            9999998  889998 77765444

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=81.26  E-value=2.8  Score=40.91  Aligned_cols=90  Identities=18%  Similarity=0.219  Sum_probs=64.0

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHH-------HHHHhhhC--CCeEEEEccccchHHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI-------FDTIRHIR--PDVSTVCVGLAASMGAF  197 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaI-------yD~Ir~~k--~~V~Tvv~G~AASaAsl  197 (246)
                      ++|.+.+...+.+...+..-. +. .-|+....+|.|..+.+|..-       +..+....  .|+.+++.|-|++.+++
T Consensus       109 ~gGS~g~~~~~Ki~ra~e~A~-~~-~lP~I~l~dSgGaRmqEg~~~l~~~~~i~~~~~~~s~~iP~Isvv~G~~~GG~a~  186 (530)
T 3iav_A          109 FGGALGEVYGQKIVKVMDFAL-KT-GCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVY  186 (530)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHH-HH-TCCEEEEECCCSBCGGGTHHHHHHHHHHHHHHHHTTTTSCEEEEECSEEEGGGGH
T ss_pred             ceEeccHHHHHHHHHHHHHHH-Hc-CCCEEEEEcCCCcchhhhhhhHHHHHHHHHHHHHHcCCCCEEEEEecCcchHHHH
Confidence            567777777887775554222 22 568999999999887665432       22222222  58899999999999999


Q ss_pred             HHccCCCCcEEecCC-cEEEEEcC
Q 025891          198 LLSAGTKGKRYSLPN-SRIMIHQP  220 (246)
Q Consensus       198 Il~AGdkgkR~a~pn-S~iMIHqP  220 (246)
                      ..+.||.  .+|.++ +.+.+--|
T Consensus       187 ~~al~D~--~im~~~~a~i~~aGP  208 (530)
T 3iav_A          187 SPAITDF--TVMVDQTSHMFITGP  208 (530)
T ss_dssp             HHHHSSE--EEEETTTCEEESSCH
T ss_pred             HHHhCCE--EEEecCCcEEEecCH
Confidence            9999998  887765 88876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	2e-52
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	5e-43
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	3e-40
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	1e-33
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	2e-29

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  166 bits (421), Expect = 2e-52
 Identities = 76/131 (58%), Positives = 103/131 (78%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM
Sbjct: 5   RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGM 64

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           +I+DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG  +D
Sbjct: 65  SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATD 124

Query: 231 IDLQVHIMAYF 241
           I++    +   
Sbjct: 125 IEIHAREILKV 135

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  142 bits (358), Expect = 5e-43
 Identities = 67/128 (52%), Positives = 92/128 (71%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 5   SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 64

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           DT+     D++T  +G+AASMG FLL+AGTKGKRY+LP++RI++HQPLGG  G  +DI +
Sbjct: 65  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAI 124

Query: 234 QVHIMAYF 241
           Q    A  
Sbjct: 125 QAEQFAVI 132

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  135 bits (341), Expect = 3e-40
 Identities = 67/131 (51%), Positives = 95/131 (72%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RI+   GP++D +A++++AQLL+L +    K I MY+NSPGG VTAG+
Sbjct: 15  RAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGL 74

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI+DT+++I   + T CVG AASMG+ LL+AGT G R+SLPNSRIMIHQP GGA+G  +D
Sbjct: 75  AIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATD 134

Query: 231 IDLQVHIMAYF 241
           I +Q   +   
Sbjct: 135 IAIQAEEIMKL 145

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score =  117 bits (295), Expect = 1e-33
 Identities = 67/128 (52%), Positives = 92/128 (71%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   GPVED+MAN ++AQLL+LDA D  KDI +Y+N+PGGSV+AG+
Sbjct: 13  RSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGL 72

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
           AI DT+  I+ DV T+ +G+AASMG  + S+G KGKR+ LPN+  MIHQP+GG  GG   
Sbjct: 73  AIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQ 132

Query: 231 IDLQVHIM 238
            D+ +   
Sbjct: 133 TDMAIAPE 140

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score =  107 bits (267), Expect = 2e-29
 Identities = 59/128 (46%), Positives = 83/128 (64%), Gaps = 1/128 (0%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V    F+ RII     +    A+ +++QLLYLD ++ N DI +Y+NSPGGS+  G+AI 
Sbjct: 10  DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAIL 68

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
           D   +I+ D+ T+  GL ASM + +L++G KGKR SLPN RIMIHQPLG A G   DI++
Sbjct: 69  DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 128

Query: 234 QVHIMAYF 241
           Q   + Y 
Sbjct: 129 QTKEILYL 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	97.28
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	97.07
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	96.97
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	96.96
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	96.94
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	96.91
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.89
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	96.85
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	96.78
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	96.61
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	96.56
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	96.48
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.48
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	96.33
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.29
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	96.28
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.25
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	96.19
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.81
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	95.27
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	95.09
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	94.51
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	89.92
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	89.71
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	89.11
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	87.74
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	83.37

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=4e-42  Score=294.02  Aligned_cols=134  Identities=50%  Similarity=0.809  Sum_probs=129.4

Q ss_pred             hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.|+|++|+++|||||+|+||+++++.++++|++|+.++++++|+||||||||+|++|++|||+|+.++.+|+|+|.|+
T Consensus        15 ~~~Di~s~l~~~Riifl~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~~~~V~tv~~G~   94 (193)
T d1tg6a1          15 RAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQ   94 (193)
T ss_dssp             --CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSCSCEEEEEEEE
T ss_pred             hhhhHhHHHhccCEEEECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCcccHHHHHHHHHHHHhhcCceEEEEccc
Confidence            46699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |||||++|+++|++|+|++.|||++|||||+++++|++.|++++++++.++++.
T Consensus        95 aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~  148 (193)
T d1tg6a1          95 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQ  148 (193)
T ss_dssp             EETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998763

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=2.5e-40  Score=281.82  Aligned_cols=134  Identities=51%  Similarity=0.859  Sum_probs=116.7

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      |+..|+|++||++|||||+|+||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|
T Consensus        12 ~~~~di~s~Ll~~rii~l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai~d~i~~~~~~v~t~~~G   91 (192)
T d1y7oa1          12 ERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMG   91 (192)
T ss_dssp             --CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhhhhHHhccCEEEECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCCCCHHHHHHHHHHHHhcCcceEEEecc
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCC--HHHHHHHHHHHHHHhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGG--QSDIDLQVHIMAYFLT  243 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~--a~Di~i~A~eL~k~~~  243 (246)
                      .|||||++|++||++|+|++.|||++|||||+++..|+  ..|+++.++|+.+++.
T Consensus        92 ~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~  147 (192)
T d1y7oa1          92 MAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRN  147 (192)
T ss_dssp             EEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHH
T ss_pred             ccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999886  4678999999988764

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.2e-39  Score=272.71  Aligned_cols=130  Identities=52%  Similarity=0.847  Sum_probs=117.6

Q ss_pred             cHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccch
Q 025891          114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       114 dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AAS  193 (246)
                      +||++|+++|||||+|+||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.+|+|+|.|.|+|
T Consensus         5 ~i~~~l~~~rii~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~gl~i~d~i~~~~~~v~t~~~G~aaS   84 (179)
T d2cbya1           5 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAAS   84 (179)
T ss_dssp             HHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEEEEET
T ss_pred             HHHHHHHhCCEEEECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCCCCHHHHHHHHHHHHhhccceeeehhhhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT  243 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~  243 (246)
                      ||++|+++|++|+|++.|||++|||||+++.+|+..|+++.++++.++++
T Consensus        85 ~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~  134 (179)
T d2cbya1          85 MGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKK  134 (179)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999875

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-39  Score=272.66  Aligned_cols=135  Identities=56%  Similarity=0.951  Sum_probs=130.5

Q ss_pred             hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ||..|+|++|+++|||||+|+||+++++.++++|++++.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|
T Consensus         4 ~~~~di~s~L~~~riI~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~~~~v~tv~~G   83 (183)
T d1yg6a1           4 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMG   83 (183)
T ss_dssp             CCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhHhHHHhccCEEEECCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCCccHHHHHHHHHHHHhCCCCEEEEEEE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      .|||||++|++||++|+|++.|||++|+|||+++..|++.|+++.++++.++++.
T Consensus        84 ~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~  138 (183)
T d1yg6a1          84 QAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGR  138 (183)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             EeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997753

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=4.4e-37  Score=261.29  Aligned_cols=131  Identities=45%  Similarity=0.785  Sum_probs=118.5

Q ss_pred             ccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccc
Q 025891          113 QNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA  192 (246)
Q Consensus       113 ~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AA  192 (246)
                      .|++++|+++|||||+|+||+++++.++++|++|+.++ .++|+||||||||+|++|++|||+|+.++.+|+|+|.|.|+
T Consensus         9 ~d~~~~l~~~rii~l~g~Id~~~~~~~i~~l~~l~~~~-~~~I~l~INS~GG~v~~g~ai~d~i~~~~~~v~tv~~G~aa   87 (190)
T d2f6ia1           9 KDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVA   87 (190)
T ss_dssp             HHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHC-CSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEEC
T ss_pred             hhHHHHHHcCcEEEECCeeCHHHHHHHHHHHHHHhccC-CCCeEEEEeCchhhhhHHHHHHHHHHhhCCceEEEEecccc
Confidence            48999999999999999999999999999999999876 57899999999999999999999999999999999999999


Q ss_pred             hHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891          193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL  244 (246)
Q Consensus       193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~  244 (246)
                      |||++|+++|++|+|++.||+++|+|||+++.+|+.+|+++.++++.++++.
T Consensus        88 S~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~  139 (190)
T d2f6ia1          88 SMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKL  139 (190)
T ss_dssp             HHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHH
T ss_pred             chhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998763

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.00078  Score=56.48  Aligned_cols=89  Identities=15%  Similarity=0.143  Sum_probs=69.2

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCCHHHH--------------------------HHHHHHHhh
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTAG--------------------------MAIFDTIRH  178 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP------GGsV~aG--------------------------laIyD~Ir~  178 (246)
                      ++.++...+.+.|..++.++..+-|.|  .+-      ||++.+.                          ..+++.|..
T Consensus        28 ls~~m~~el~~~l~~~~~d~~v~~vvl--tg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (275)
T d1dcia_          28 MNRAFWRELVECFQKISKDSDCRAVVV--SGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEK  105 (275)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEE--EESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEE--eccccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHh
Confidence            788888999999988876554444333  443      5665432                          246778899


Q ss_pred             hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      ++.||.+.+.|.|.++|..|+++||-  |++.++++|.+....-|
T Consensus       106 ~~kPvIaav~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~~G  148 (275)
T d1dcia_         106 CPKPVIAAIHGGCIGGGVDLISACDI--RYCTQDAFFQVKEVDVG  148 (275)
T ss_dssp             SSSCEEEEECSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGT
T ss_pred             cCCCEEEEEeeEeehhhHHHHhhcCc--hhhccCccccchhcccc
Confidence            99999999999999999999999999  99999999987655433

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=0.0017  Score=53.42  Aligned_cols=92  Identities=18%  Similarity=0.117  Sum_probs=69.4

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCH------------------HHHHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSV------------------TAGMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV------------------~aGlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |-||+.                  .....++..|..++.||.+.+.
T Consensus        23 l~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~  102 (253)
T d1uiya_          23 LSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVN  102 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEEEeC
Confidence            778888888888888876554444444322    124442                  1233456778899999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      |.|.+.|..|+++||-  |++.+++.+.++....+.
T Consensus       103 G~a~GgG~~lal~~D~--ria~~~a~~~~~e~~~g~  136 (253)
T d1uiya_         103 GPAVAGGAGLALACDL--VVMDEEARLGYTEVKIGF  136 (253)
T ss_dssp             SCEETHHHHHHHTSSE--EEEETTCEEECCHHHHTC
T ss_pred             eEEehhhHHHHhhhhh--hhhhhhhHHhhhhccccc
Confidence            9999999999999999  999999999988766543

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.002  Score=54.20  Aligned_cols=92  Identities=15%  Similarity=0.095  Sum_probs=68.6

Q ss_pred             ccChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHH-----------------HHHHHHHHHhhhCCCeEEEEc
Q 025891          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----------------AGMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       130 ~Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~-----------------aGlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      .++.++.+++.+.+..++.++..+-|.|.=+    |-|+++.                 ....++..|..++.||.+.+.
T Consensus        32 al~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~  111 (263)
T d1wz8a1          32 AMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVE  111 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeeecc
Confidence            3677788888888877776554444444322    3456542                 223456678888999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |.|...|..|+++||-  |++.++++|.+.....|
T Consensus       112 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G  144 (263)
T d1wz8a1         112 KVAVGAGLALALAADI--AVVGKGTRLLDGHLRLG  144 (263)
T ss_dssp             SEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             cccccccccccccccc--ccccccccccccccccc
Confidence            9999999999999999  99999999987665433

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0018  Score=54.41  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCH---------------HHHHHHHHHHhhhCCCeEEEEccc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSV---------------TAGMAIFDTIRHIRPDVSTVCVGL  190 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV---------------~aGlaIyD~Ir~~k~~V~Tvv~G~  190 (246)
                      ++.++.+.|.+.|..++.++..+-|.|.=     -|-|++.               .....++..|..++.||.+.+.|.
T Consensus        30 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~  109 (266)
T d1hzda_          30 LSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGL  109 (266)
T ss_dssp             BCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccccccc
Confidence            77788888888888887765444444421     1223332               344457888889999999999999


Q ss_pred             cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      |..+|..|+++||-  |++.++++|.+-.-.-|
T Consensus       110 a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G  140 (266)
T d1hzda_         110 ALGGGLELALACDI--RVAASSAKMGLVETKLA  140 (266)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             cccccceeccccce--eeecCCcEEeeccccee
Confidence            99999999999999  99999999987665543

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=96.94  E-value=0.0027  Score=52.34  Aligned_cols=90  Identities=10%  Similarity=0.136  Sum_probs=66.3

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC-------CH----------------HHHHHHHHHHhhhCCCeEEEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG-------SV----------------TAGMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG-------sV----------------~aGlaIyD~Ir~~k~~V~Tvv  187 (246)
                      ++.++...|.+.+..++.++..+-  +.|-|-||       ++                .....++..|+.++.||.+.+
T Consensus        24 l~~~~~~~l~~~l~~~~~d~~i~~--vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav  101 (230)
T d2a7ka1          24 FSRTLETSVKDALARANADDSVRA--VVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAV  101 (230)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCE--EEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCcccc--cceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeeec
Confidence            677888888888877775433222  33444443       21                233446778888899999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA  224 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~  224 (246)
                      .|.|.+.|..|+++||.  |++.++++|.+-....|.
T Consensus       102 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G~  136 (230)
T d2a7ka1         102 DGYAIGMGFQFALMFDQ--RLMASTANFVMPELKHGI  136 (230)
T ss_dssp             CSEEETHHHHHHTTSSE--EEEETTCEEECCGGGGTC
T ss_pred             ccccccccccchhccch--hhccccchhhhccccccc
Confidence            99999999999999999  999999998865554443

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=96.91  E-value=0.00069  Score=57.07  Aligned_cols=89  Identities=11%  Similarity=0.062  Sum_probs=67.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC------CHH--------------------HHHHHHHHHhhhCCCeE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG------SVT--------------------AGMAIFDTIRHIRPDVS  184 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG------sV~--------------------aGlaIyD~Ir~~k~~V~  184 (246)
                      ++.++..+|.+.|..++.++..+-|.|  -+.|+      ++.                    ....+++.|..++.||.
T Consensus        27 l~~~~~~el~~~l~~~~~d~~i~~vvl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI  104 (269)
T d1nzya_          27 LSVKAMQEVTDALNRAEEDDSVGAVMI--TGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVL  104 (269)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEE--eCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence            677888889888888886554443333  34443      321                    12246667888999999


Q ss_pred             EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      +.+.|.|...|..|+++||-  |++.+++++.+.....+
T Consensus       105 aav~G~a~GgG~~lal~~D~--ria~~~a~~~~~~~~~g  141 (269)
T d1nzya_         105 AAINGVAAGGGLGISLASDM--AICADSAKFVCAWHTIG  141 (269)
T ss_dssp             EEECSEEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             hhhhhhcCCCceeeeecccH--hhhhhhhhhcccccccc
Confidence            99999999999999999999  99999999988766644

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0008  Score=59.78  Aligned_cols=69  Identities=25%  Similarity=0.371  Sum_probs=60.2

Q ss_pred             CCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          152 NKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       152 ~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .-||..+|++||          |...++-.....|-..+.|+.+|+.|.+.|.|++.++.+|.  ..|.+||.+-+-.|.
T Consensus       151 ~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~--v~m~~~a~~svispE  228 (316)
T d2f9ya1         151 KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDK--VNMLQYSTYSVISPE  228 (316)
T ss_dssp             TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSE--EEECTTCEEESSCHH
T ss_pred             CcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhH--HHHHhhhHHhhccch
Confidence            569999999999          45566666777778888999999999999999999999998  999999999877666


Q ss_pred             C
Q 025891          222 G  222 (246)
Q Consensus       222 ~  222 (246)
                      +
T Consensus       229 g  229 (316)
T d2f9ya1         229 G  229 (316)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.003  Score=52.48  Aligned_cols=88  Identities=17%  Similarity=0.134  Sum_probs=67.6

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHH-------------------------HHHHHHHHhhhCCCeEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------------------------GMAIFDTIRHIRPDVST  185 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a-------------------------GlaIyD~Ir~~k~~V~T  185 (246)
                      ++.++...+.+.|..++.++   .+.|.+.+-|+...+                         ...++..|..++.||.+
T Consensus        27 ls~~~~~~l~~~l~~~~~d~---~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa  103 (245)
T d2f6qa1          27 INTEMYHEIMRALKAASKDD---SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  103 (245)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS---CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCC---ceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEE
Confidence            77788888888888877543   345666655532111                         12466778888999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .+.|.|..+|..++++||-  |++.+++.|.+-...-|
T Consensus       104 ~v~G~a~GgG~~la~~~D~--~ia~~~a~f~~pe~~~G  139 (245)
T d2f6qa1         104 VVNGPAVGISVTLLGLFDA--VYASDRATFHTPFSHLG  139 (245)
T ss_dssp             EECSCEETHHHHGGGGCSE--EEEETTCEEECCTGGGT
T ss_pred             EECCccccccccchhhhhh--hhhhccCeEecccccCC
Confidence            9999999999999999999  99999999988665544

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.78  E-value=0.0025  Score=55.11  Aligned_cols=92  Identities=16%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             ccChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH------------------HHHHHHHHhhhCCCeEEEE
Q 025891          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------------GMAIFDTIRHIRPDVSTVC  187 (246)
Q Consensus       130 ~Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv  187 (246)
                      .++.++.+.+.+.|..++.++..+-|.|.=    =|-|+++..                  ...++..|+.++.||.+.+
T Consensus        31 al~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  110 (310)
T d1wdka4          31 KFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAI  110 (310)
T ss_dssp             BCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccceeec
Confidence            377788888888888887655444444331    133444321                  2346778888999999999


Q ss_pred             ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|.|.+.|.-|+++||.  |++.++++|.+.....|
T Consensus       111 ~G~a~GgG~elal~cD~--ria~~~a~f~~pe~~~G  144 (310)
T d1wdka4         111 NGIALGGGLEMCLAADF--RVMADSAKIGLPEVKLG  144 (310)
T ss_dssp             CSCEETHHHHHHHTSSE--EEEETTCEEECGGGGGT
T ss_pred             cccccccccccchhhhh--hhccccceecccccccC
Confidence            99999999999999999  99999999887665544

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=96.61  E-value=0.0018  Score=54.17  Aligned_cols=87  Identities=14%  Similarity=0.105  Sum_probs=65.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC-------CH---------------HHHHHHHHHHhhhCCCeEEEEc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG-------SV---------------TAGMAIFDTIRHIRPDVSTVCV  188 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG-------sV---------------~aGlaIyD~Ir~~k~~V~Tvv~  188 (246)
                      ++.++...+.+.|..++.++..+-|.|  .+-|+       ++               .....++..|..++.||.+.+.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  104 (249)
T d1sg4a1          27 LSLEFLTELVISLEKLENDKSFRGVIL--TSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN  104 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCEEEE--EESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCccEEEE--EeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence            567788888888887776544444444  33332       22               2333467788888999999999


Q ss_pred             cccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      |.|...|.-|+++||.  |++.+++.+.+..|.
T Consensus       105 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~pe  135 (249)
T d1sg4a1         105 GACPAGGCLVALTCDY--RILADNPRYCIGLNE  135 (249)
T ss_dssp             EEBCHHHHHHHTTSSE--EEEECCTTCCBSCCG
T ss_pred             cccccccccccccccc--ceeeccccccccccc
Confidence            9999999999999999  999999998777665

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.0041  Score=51.98  Aligned_cols=88  Identities=15%  Similarity=0.075  Sum_probs=64.2

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH--------------------------HHHHHHHHhhhC
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------------------GMAIFDTIRHIR  180 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a--------------------------GlaIyD~Ir~~k  180 (246)
                      ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+                          ...+++.|..++
T Consensus        29 ~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  108 (266)
T d1pjha_          29 LEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHS  108 (266)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            677888888888888876544444443211    45555432                          223677888999


Q ss_pred             CCeEEEEccccchHHHHHHccCCCCcEEecC-CcEEEEEcC
Q 025891          181 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLP-NSRIMIHQP  220 (246)
Q Consensus       181 ~~V~Tvv~G~AASaAslIl~AGdkgkR~a~p-nS~iMIHqP  220 (246)
                      .||.+.+.|.|.++|..|+++||-  |++.+ ++.|.+...
T Consensus       109 kP~IAav~G~a~GgG~~lal~~D~--~ia~~~~~~~~~pe~  147 (266)
T d1pjha_         109 KVLICCLNGPAIGLSAALVALCDI--VYSINDKVYLLYPFA  147 (266)
T ss_dssp             SEEEEEECSCEEHHHHHHHHHSSE--EEESSTTCEEECCHH
T ss_pred             hhhhhhhhcccccccccchhccch--hhhhhcccccccccc
Confidence            999999999999999999999999  99865 467765433

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.48  E-value=0.0023  Score=52.89  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=67.4

Q ss_pred             EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHH-------------------HHHHHHHhhh
Q 025891          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-------------------MAIFDTIRHI  179 (246)
Q Consensus       124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aG-------------------laIyD~Ir~~  179 (246)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|  .|.+-|+...+|                   ..+++.|..+
T Consensus        19 ~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~v--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (260)
T d1mj3a_          19 LIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAI--VLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRI   96 (260)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEE--EEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGC
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceE--EEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccC
Confidence            4556543     6778888888888888765544333  334444332111                   1235677788


Q ss_pred             CCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      +.||.+.+.|.|.++|..|+++||-  |++.++++|.+-...
T Consensus        97 ~kPvIaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~  136 (260)
T d1mj3a_          97 KKPVIAAVNGYALGGGCELAMMCDI--IYAGEKAQFGQPEIL  136 (260)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECGGGG
T ss_pred             CCeEEEEEcCeEeHHHHHHHHHCCE--EEEcCCCEEECchhc
Confidence            8899999999999999999999999  999999999875433

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0037  Score=53.76  Aligned_cols=91  Identities=20%  Similarity=0.327  Sum_probs=71.9

Q ss_pred             ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl  197 (246)
                      +|.++.+.+.....-+...+..  +=+|...+|+||          |-+..+..+..++...+.|..+++.|.+.++|++
T Consensus        80 ~G~~~~~~a~Kaa~fi~lc~~~--~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~  157 (264)
T d1vrga2          80 AGVLDIDSSDKAARFIRFLDAF--NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYI  157 (264)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHHHHh--CCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhh
Confidence            3778888776665433333332  468999999999          6678889999999999999999999999999887


Q ss_pred             HHcc----CCCCcEEecCCcEEEEEcCCC
Q 025891          198 LLSA----GTKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       198 Il~A----GdkgkR~a~pnS~iMIHqP~~  222 (246)
                      .+++    ++.  .++.|++++.+-.|.+
T Consensus       158 am~~~~~~~d~--~~awP~a~~~vm~pe~  184 (264)
T d1vrga2         158 AMGSKHLGADM--VLAWPSAEIAVMGPEG  184 (264)
T ss_dssp             HTTCGGGTCSE--EEECTTCEEESSCHHH
T ss_pred             hccCCccCCCe--eeeccceeEEecCHHH
Confidence            7774    444  8899999998776664

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0048  Score=51.59  Aligned_cols=88  Identities=14%  Similarity=0.127  Sum_probs=65.8

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHH-------------------HHHHHHHHhhhCCCeEE
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA-------------------GMAIFDTIRHIRPDVST  185 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~a-------------------GlaIyD~Ir~~k~~V~T  185 (246)
                      ++.++.+.+.+.|..++.+ +.+  .|.|.+-|      +++.+                   ...++..|..++.||.+
T Consensus        27 ls~~~~~el~~al~~~~~d-~~~--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Ia  103 (258)
T d2fw2a1          27 LNTEVIKEMVNALNSAAAD-DSK--LVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVV  103 (258)
T ss_dssp             BCHHHHHHHHHHHHHHHHS-SCS--EEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHcC-CCE--EEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeeee
Confidence            6678888888888877764 343  34455544      34321                   12356678888999999


Q ss_pred             EEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       186 vv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .+.|.|..+|..|+++||-  |++.++++|.+....-|
T Consensus       104 av~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G  139 (258)
T d2fw2a1         104 SVNGPAIGLGASILPLCDL--VWANEKAWFQTPYTTFG  139 (258)
T ss_dssp             EECSCEETHHHHTGGGSSE--EEEETTCEEECCHHHHT
T ss_pred             ecccccccccccccccccc--cceecccceeecccccc
Confidence            9999999999999999999  99999999987655533

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.29  E-value=0.0053  Score=52.80  Aligned_cols=93  Identities=15%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl  197 (246)
                      +|.|+.+.+.....-+..-+..  +=||...+|+||          |.+..+..+..++...+.|..||+.|-+.++|.+
T Consensus        78 ~G~~~~~~a~Ka~~fi~lc~~~--~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~  155 (263)
T d1xnya2          78 AGCLDITASEKAARFVRTCDAF--NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYD  155 (263)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             cCCcchhhHHHHHHHHHHHHHh--CCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCcccccee
Confidence            4789988777665443333332  468999999999          5567888899999999999999999999997777


Q ss_pred             HHccC--CCCcEEecCCcEEEEEcCCC
Q 025891          198 LLSAG--TKGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       198 Il~AG--dkgkR~a~pnS~iMIHqP~~  222 (246)
                      .+++.  .....++.|++++.+-.|.+
T Consensus       156 ~m~~~~~~~d~~~awP~a~~gvm~pe~  182 (263)
T d1xnya2         156 VMGSKHLGADLNLAWPTAQIAVMGAQG  182 (263)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             ccCCcccCCcEEEEcchhhhhccCHHH
Confidence            66542  12348999999998776653

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0095  Score=49.67  Aligned_cols=89  Identities=10%  Similarity=0.056  Sum_probs=65.9

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC-------CH--------------HHHHHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG-------SV--------------TAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG-------sV--------------~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++.++...+.+.|..++. +.. ...|..-+.||       ++              .....+++.|..++.||.+.+.|
T Consensus        28 l~~~~~~~l~~al~~~~~-~~~-~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  105 (261)
T d1ef8a_          28 LSKVFIDDLMQALSDLNR-PEI-RCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEG  105 (261)
T ss_dssp             CCHHHHHHHHHHHHHTCS-TTC-CEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhC-CCC-EEEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhcccc
Confidence            677788888888876652 222 23333333343       32              23457899999999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g  223 (246)
                      .|..+|..|+++||-  |++.++++|.+-....|
T Consensus       106 ~a~GgG~~lal~cD~--ria~~~a~~~~pe~~~G  137 (261)
T d1ef8a_         106 SVWGGAFEMIMSSDL--IIAASTSTFSMTPVNLG  137 (261)
T ss_dssp             EEETHHHHHHHHSSE--EEEETTCEEECCHHHHT
T ss_pred             cccchhhhhhhhhhh--hhhhHhHHHhhhhcccc
Confidence            999999999999999  99999999876544433

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.25  E-value=0.0056  Score=52.73  Aligned_cols=92  Identities=14%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl  197 (246)
                      +|.++.+.+..... ++.|-... .-+|...+|+||          |.+..|..+..++...+.|..||+.|-+.++|.+
T Consensus        83 ~G~~~~~~~~Ka~r-fi~lc~~~-~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~  160 (271)
T d2a7sa2          83 AGCLDINASEKAAR-FVRTCDCF-NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYC  160 (271)
T ss_dssp             GGCBCHHHHHHHHH-HHHHHHHT-TCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCcCHHHHHHHHH-HHHHHHHh-CCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhh
Confidence            47889888776543 33333222 569999999999          5688889999999999999999999999998877


Q ss_pred             HHccCC--CCcEEecCCcEEEEEcCC
Q 025891          198 LLSAGT--KGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       198 Il~AGd--kgkR~a~pnS~iMIHqP~  221 (246)
                      .+++..  ....++-|++++.+-.|.
T Consensus       161 am~~~~~~~d~~~AwP~A~igvMgpe  186 (271)
T d2a7sa2         161 VMGSKDMGCDVNLAWPTAQIAVMGAS  186 (271)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHH
T ss_pred             hhcccccccceEEEecceeEeecCHH
Confidence            766521  223789999998875554

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.19  E-value=0.0065  Score=51.57  Aligned_cols=103  Identities=16%  Similarity=0.102  Sum_probs=74.1

Q ss_pred             hccCcE--EEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC----CCCH-------H-------------
Q 025891          119 LFQHRI--IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP----GGSV-------T-------------  167 (246)
Q Consensus       119 L~~~RI--IfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP----GGsV-------~-------------  167 (246)
                      -.++.|  |.|+-|     ++.++...+.+.|..++.++..+-|.|.=+.+    ||..       .             
T Consensus        25 ~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~  104 (297)
T d1q52a_          25 HVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGD  104 (297)
T ss_dssp             ESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC----------------
T ss_pred             EccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhccccccccccc
Confidence            334555  555444     77888888988888888766566666655433    3322       0             


Q ss_pred             -------------HHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCC-cEEEEEcCCCC
Q 025891          168 -------------AGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPN-SRIMIHQPLGG  223 (246)
Q Consensus       168 -------------aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pn-S~iMIHqP~~g  223 (246)
                                   ....+++.|..++.||.+.+.|.|..+|..|+++||-  |++.+. ++|.+.....|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~--~ia~~~~~~f~~pe~~~G  172 (297)
T d1q52a_         105 TADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDL--TLASREYARFKQTDADVG  172 (297)
T ss_dssp             -------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECCGGGGT
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhc--cccccccccceeeeeccc
Confidence                         1235777888899999999999999999999999999  999775 56777665544

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.81  E-value=0.01  Score=50.94  Aligned_cols=93  Identities=15%  Similarity=0.248  Sum_probs=71.6

Q ss_pred             ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl  197 (246)
                      +|.++.+.++....-+...+..  +=||...+|+||          |.+..|-.+..++.....|..||+.|.|.++|++
T Consensus        80 ~G~~~~~~a~Kaarfi~lc~~~--~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~  157 (264)
T d1on3a2          80 SGCLDINASDKAAEFVNFCDSF--NIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYL  157 (264)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             ccccChHHHHHHHHHHHHHHhc--CCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCcccc
Confidence            6778887766554333333332  569999999999          7788899999999999999999999999998888


Q ss_pred             HHccCC--CCcEEecCCcEEEEEcCCC
Q 025891          198 LLSAGT--KGKRYSLPNSRIMIHQPLG  222 (246)
Q Consensus       198 Il~AGd--kgkR~a~pnS~iMIHqP~~  222 (246)
                      .+++..  ...+++-|++.+.+-.|.+
T Consensus       158 am~g~~~~~d~~~aWP~A~~~vMg~Eg  184 (264)
T d1on3a2         158 AMCNRDLGADAVYAWPSAEIAVMGAEG  184 (264)
T ss_dssp             TTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             ccccccCChhheeeHHhhHhhhccHHH
Confidence            887643  2347888888888766554

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=95.27  E-value=0.037  Score=45.82  Aligned_cols=82  Identities=10%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC------C---------------HHHHHHHHHHHhhhCCCeEEEEcc
Q 025891          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG------S---------------VTAGMAIFDTIRHIRPDVSTVCVG  189 (246)
Q Consensus       131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG------s---------------V~aGlaIyD~Ir~~k~~V~Tvv~G  189 (246)
                      ++.++...+.+.|..++.++..+-  |.|.+-|.      +               ......++..|..++.||.+.+.|
T Consensus        37 l~~~~~~el~~al~~~~~d~~v~~--vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g  114 (249)
T d1szoa_          37 WTSTAHDELAYCFHDIACDRENKV--VILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG  114 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCE--EEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcce--EeeecccccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeecc
Confidence            567788888888887776543333  33444443      2               233456788899999999999999


Q ss_pred             ccchHHHHHHccCCCCcEEecCCcEEEE
Q 025891          190 LAASMGAFLLSAGTKGKRYSLPNSRIMI  217 (246)
Q Consensus       190 ~AASaAslIl~AGdkgkR~a~pnS~iMI  217 (246)
                      .|.+ |..|+++||-  |++.+++.|..
T Consensus       115 ~~~G-G~~l~l~~D~--ria~~~a~f~~  139 (249)
T d1szoa_         115 PVTN-APEIPVMSDI--VLAAESATFQD  139 (249)
T ss_dssp             CBCS-STHHHHTSSE--EEEETTCEEEC
T ss_pred             cccc-cccccccccc--ccccCCcEEEE
Confidence            7766 6678888998  99999999864

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.09  E-value=0.095  Score=45.45  Aligned_cols=76  Identities=9%  Similarity=0.106  Sum_probs=59.0

Q ss_pred             EEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchH
Q 025891          125 IRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASM  194 (246)
Q Consensus       125 IfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASa  194 (246)
                      ...+|.|+.+.+.....-+...+..  .-+|...+|+||          |.+..|-.+..++.....|..+++.|.+.++
T Consensus        93 ~~~~G~l~~~~a~K~~rfi~lc~~~--~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~  170 (299)
T d1pixa3          93 VGIGGKLYRQGLVKMNEFVTLCARD--RLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAA  170 (299)
T ss_dssp             CEETTEECHHHHHHHHHHHHHHHHT--TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETT
T ss_pred             cCCCCccCHHHHHHHHHHHHHHHHc--CCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEecccccc
Confidence            4579999998877665444333332  468999999999          4567777888899999999999999999998


Q ss_pred             HHHHHccC
Q 025891          195 GAFLLSAG  202 (246)
Q Consensus       195 AslIl~AG  202 (246)
                      |.+.+++.
T Consensus       171 a~~am~g~  178 (299)
T d1pixa3         171 AHYVLGGP  178 (299)
T ss_dssp             HHHHTTCT
T ss_pred             cccccccC
Confidence            87766653

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.51  E-value=0.044  Score=47.23  Aligned_cols=91  Identities=11%  Similarity=0.070  Sum_probs=63.8

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH-----------HHHH--HhhhCCCeEEEEccccch
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-----------IFDT--IRHIRPDVSTVCVGLAAS  193 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla-----------IyD~--Ir~~k~~V~Tvv~G~AAS  193 (246)
                      .+|.+++...+.+...+. +-.+. .-|+...++|+|+.+..+..           +++.  |.....|+.+++.|-|.+
T Consensus       116 ~gGs~~~~~~~K~~r~~~-lA~~~-~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~g  193 (287)
T d1pixa2         116 LAGAWVPGQAECLLRASD-TAKTL-HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPA  193 (287)
T ss_dssp             TTTEECTTHHHHHHHHHH-HHHHH-TCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEET
T ss_pred             ccccchhhHHHHHHHHHH-hhhhc-CCCEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCccc
Confidence            346777777776654332 22222 46899999999988754332           3332  333467999999999999


Q ss_pred             HHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891          194 MGAFLLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       194 aAslIl~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .|++..++++.  ..+.+++.+.+--|.
T Consensus       194 GgAy~~~~~~~--i~~~~~a~i~~~Gp~  219 (287)
T d1pixa2         194 GGGYHSISPTV--IIAHEKANMAVGGAG  219 (287)
T ss_dssp             HHHHHHHSSSE--EEEETTCEEESCCCT
T ss_pred             cceecccccee--EEecCCeEEEEECHH
Confidence            99998877776  778889999887664

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.92  E-value=0.31  Score=40.82  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=61.0

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHH-------HhhhC--CCeEEEEccccchHHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDT-------IRHIR--PDVSTVCVGLAASMGAF  197 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~-------Ir~~k--~~V~Tvv~G~AASaAsl  197 (246)
                      ++|-++....+.+..... +..+. .-|++..++|+|+.+.++......       +....  .|+.+++.|-|++.+++
T Consensus       100 ~gGS~g~~~~~K~~r~~e-~A~~~-~lPlI~l~dsgGarm~e~~~~~~~~~~~~~~~~~~s~~vP~I~vv~G~~~gG~a~  177 (258)
T d1xnya1         100 FGGALGEVYGQKIVKVMD-FALKT-GCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVY  177 (258)
T ss_dssp             GGGCBCHHHHHHHHHHHH-HHHHH-TCCEEEEECCCSBCGGGTHHHHHHHHHHHHHHHHTTTTSCEEEEECSEEEGGGGH
T ss_pred             hcCccchhhHHHHHHHHH-HHHHc-CCceEEEecCCCcccCcccccccchhHHHHHHHHHcCCCCEEEEEcCCcChhHHH
Confidence            456667766666654333 22222 468999999999987666554332       22222  58999999999999998


Q ss_pred             HHccCCCCcEEe-cCCcEEEEEcC
Q 025891          198 LLSAGTKGKRYS-LPNSRIMIHQP  220 (246)
Q Consensus       198 Il~AGdkgkR~a-~pnS~iMIHqP  220 (246)
                      .++.++.  .++ .+.+.+++--|
T Consensus       178 ~~~~~~~--vim~~~~a~i~~aGP  199 (258)
T d1xnya1         178 SPAITDF--TVMVDQTSHMFITGP  199 (258)
T ss_dssp             HHHHSSE--EEEETTTCEEESSCH
T ss_pred             HHHhccc--hhhcccceEEEecCH
Confidence            8887776  454 56888887655

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.71  E-value=0.54  Score=42.46  Aligned_cols=97  Identities=15%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             EEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEc--cccc
Q 025891          125 IRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCV--GLAA  192 (246)
Q Consensus       125 IfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~--G~AA  192 (246)
                      --.+|.+.++.+......+..+.. .-.-||.+.+|.||          |-+-.|-.|.+++..++.|+.+|+.  |.+.
T Consensus       104 ~~~Ggv~~p~sA~K~A~~i~d~cd-~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~  182 (404)
T d1uyra2         104 QEPGQVWHPNSAFKTAQAINDFNN-GEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELR  182 (404)
T ss_dssp             EECTTCBCHHHHHHHHHHHHHHHT-TSCCCEEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEE
T ss_pred             hccCCccCchHHHHHHHHHHHhhh-ccccceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccc
Confidence            447888888887776665543432 12469999999999          5678899999999999999999995  5555


Q ss_pred             hHHHHHHccCCCC----cEEecCCcEEEEEcCCCC
Q 025891          193 SMGAFLLSAGTKG----KRYSLPNSRIMIHQPLGG  223 (246)
Q Consensus       193 SaAslIl~AGdkg----kR~a~pnS~iMIHqP~~g  223 (246)
                      + |+++.+.+...    ..|+-|++++.+-.|.+.
T Consensus       183 G-Ga~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGa  216 (404)
T d1uyra2         183 G-GSWVVVDPTINADQMEMYADVNARAGVLEPQGM  216 (404)
T ss_dssp             H-HHHHTTCGGGGTTTEEEEEETTCEEESSCHHHH
T ss_pred             h-hhhhcccCccCCccceEEECCccccccCChhhh
Confidence            5 55555543321    136778888887766654

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=89.11  E-value=0.29  Score=41.13  Aligned_cols=91  Identities=12%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH-------HHHHHhhhC--CCeEEEEccccchHHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-------IFDTIRHIR--PDVSTVCVGLAASMGAF  197 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla-------IyD~Ir~~k--~~V~Tvv~G~AASaAsl  197 (246)
                      ++|-++....+.+...... ..+. .-|++.+++|-|+.+.++..       ++..+...+  .|+.+++.|-|+..+++
T Consensus       101 ~GGS~g~~~~~K~~~a~e~-A~~~-~lPlV~l~~sgG~r~~eg~~~l~~~~~~~~~~~~ls~~vP~i~vv~Gp~~GG~a~  178 (253)
T d1on3a1         101 MGGSAGETQSTKVVETMEQ-ALLT-GTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASY  178 (253)
T ss_dssp             GGGCBCHHHHHHHHHHHHH-HHHH-TCCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEESGGGH
T ss_pred             hcccceecccchhhhhHHH-Hhhc-CCCeEEEEecCCCcccccceeccccceehHHHHHHhccceEEEEEecCcccceee
Confidence            5666777777766654432 2222 46899999999999876543       222233332  68999999999999999


Q ss_pred             HHccCCCCcEEecCCcEEEEEcCC
Q 025891          198 LLSAGTKGKRYSLPNSRIMIHQPL  221 (246)
Q Consensus       198 Il~AGdkgkR~a~pnS~iMIHqP~  221 (246)
                      .++.++-  .++.+.+.+.+--|.
T Consensus       179 ~~~~~d~--vi~~~~a~i~~aGP~  200 (253)
T d1on3a1         179 SPALTDF--IIMTKKAHMFITGPQ  200 (253)
T ss_dssp             HHHHSSE--EEEETTCEEESSCHH
T ss_pred             ccchhhh--eeccccceEEecCcc
Confidence            9999988  888899988865443

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=87.74  E-value=0.54  Score=39.40  Aligned_cols=90  Identities=14%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH----------HHHHHhhhCCCeEEEEccccchHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA----------IFDTIRHIRPDVSTVCVGLAASMGA  196 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla----------IyD~Ir~~k~~V~Tvv~G~AASaAs  196 (246)
                      ++|-++....+.+...... ..+. .-|+..+..|.|+.+.++..          ....++....|+.+++.|-++..++
T Consensus       108 ~gGS~g~~~~~Ki~~a~e~-A~~~-~lPlI~~~~sgG~r~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~a  185 (263)
T d2f9yb1         108 MGGSMGSVVGARFVRAVEQ-ALED-NCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVS  185 (263)
T ss_dssp             TTTCBCTHHHHHHHHHHHH-HHHH-TCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHH
T ss_pred             hccccccchhhHHhHHHHH-HHHc-CCCeEEEecCCCcccccccchhhcchhHHHHHHHHHhCCCceEEEecCCcchHHH
Confidence            5677777777777655442 2222 46899999999988655442          1223344457999999999998776


Q ss_pred             H-HHccCCCCcEEecCCcEEEEEcC
Q 025891          197 F-LLSAGTKGKRYSLPNSRIMIHQP  220 (246)
Q Consensus       197 l-Il~AGdkgkR~a~pnS~iMIHqP  220 (246)
                      . +++.++-  +++.++|.+++--|
T Consensus       186 a~~~~~~d~--i~~~~~s~i~~aGP  208 (263)
T d2f9yb1         186 ASFAMLGDL--NIAEPKALIGFAGP  208 (263)
T ss_dssp             TTGGGCCSE--EEECTTCBEESSCH
T ss_pred             hhhhhcCce--EeeecceeeeccCH
Confidence            5 5556666  77888999988765

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=83.37  E-value=0.6  Score=38.96  Aligned_cols=90  Identities=22%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH-------HHHHHhh--hCCCeEEEEccccchHHHH
Q 025891          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-------IFDTIRH--IRPDVSTVCVGLAASMGAF  197 (246)
Q Consensus       127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla-------IyD~Ir~--~k~~V~Tvv~G~AASaAsl  197 (246)
                      ++|.++....+.+..... +..+. .-|++..++|.|+.+.++..       ++..+..  -..|+.+++.|-|++.+++
T Consensus        98 ~gGs~g~~~~~K~~r~~e-~A~~~-~~P~I~~~dsgG~r~~e~~~~l~~~~~~~~~~~~~s~~iP~I~vv~G~~~gG~a~  175 (251)
T d1vrga1          98 MGGSLGEMHAKKIVKLLD-LALKM-GIPVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVY  175 (251)
T ss_dssp             GGGCBCHHHHHHHHHHHH-HHHHH-TCCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEBGGGGH
T ss_pred             hhcccchHHHHHHHHHHH-HHHHc-CCCEEEEEcCCCccccccccccccchHHHHHHHHHCCCCCEEEEEccCcccccee
Confidence            456677766666665333 22222 46899999999997654332       2222222  2468999999999999999


Q ss_pred             HHccCCCCcEEe-cCCcEEEEEcC
Q 025891          198 LLSAGTKGKRYS-LPNSRIMIHQP  220 (246)
Q Consensus       198 Il~AGdkgkR~a-~pnS~iMIHqP  220 (246)
                      .++.++.  .++ .+.+++.+--|
T Consensus       176 ~~~~~d~--~im~~~~a~i~~aGp  197 (251)
T d1vrga1         176 SPALTDF--IVMVDQTARMFITGP  197 (251)
T ss_dssp             HHHHSSE--EEEETTTCBCBSSCH
T ss_pred             hhhhCce--EEEEccceeEEecCc
Confidence            8888887  555 45666665433