Citrus Sinensis ID: 025930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MTIQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHccHccHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MTIQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGigllsttaanaedpqTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAkcesrastqgtktgrslliddgalpwivqnsnneaspIRRHIELALCHLAQHevnakdmisgGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY
Flexible Loop (DISEMBL)
mtiqilntisvksediraqSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKcesrastqgtktgrsLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTlahrtltsspafqaeMRRLRIDY
Low Complexity Region (SEG)
MTIQILNTISVKSEDIRAQSNQEKIVEAggltsllmllgssEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY
Disordered region (IsUnstruct)
************************IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCES********TGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLA*********************
Disordered Region (DISOPRED)
MTIQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST*GTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVR*************AHRTLTSSPAFQAEMRRLRIDY
Disordered Region (DISEMBL)
MTIQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKC*********KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY
Disordered Region (DISPRO)
MTIQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q5VQ09	891	Armadillo repeat-containi	yes	no	0.922	0.254	0.867	1e-116
Q9FZ06	919	Armadillo repeat-containi	yes	no	0.922	0.247	0.850	1e-113
Q9LPC6	894	Armadillo repeat-containi	no	no	0.926	0.255	0.828	1e-111
Q0DV28	945	Armadillo repeat-containi	no	no	0.894	0.232	0.627	1e-75
Q9SV36	1051	Armadillo repeat-containi	no	no	0.914	0.214	0.535	1e-67
Q59MN0	585	Vacuolar protein 8 OS=Can	N/A	no	0.808	0.340	0.273	1e-06
Q9M224	928	Protein ARABIDILLO 2 OS=A	no	no	0.666	0.176	0.284	2e-06
Q6BTZ4	560	Vacuolar protein 8 OS=Deb	yes	no	0.808	0.355	0.263	7e-06
B7U179	737	ARMADILLO BTB ARABIDOPSIS	no	no	0.800	0.267	0.264	8e-06
B9DHT4	710	ARM REPEAT PROTEIN INTERA	no	no	0.772	0.267	0.260	2e-05

>sp|Q5VQ09|ARK2_ORYSJ Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1

 Score =  416 bits (1068), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/227 (86%), Positives = 215/227 (94%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVEAGGLTSLLMLL SSEDETI RVAAGAIANLAMNETNQ+LIM QGG+ LLS 
Sbjct: 664 EANQEKIVEAGGLTSLLMLLRSSEDETIRRVAAGAIANLAMNETNQDLIMAQGGVSLLSM 723

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TA++AEDPQTLRMVAGAIANLCGNDKLQ +LRGEGGIKALLGMV+CGHPDVLAQVARGIA
Sbjct: 724 TASDAEDPQTLRMVAGAIANLCGNDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIA 783

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRA+TQG K G+SLLIDDGALPWIV+N+NNEA+PIRRHIELALCHLAQHEVN+K
Sbjct: 784 NFAKCESRAATQGNKVGKSLLIDDGALPWIVKNANNEAAPIRRHIELALCHLAQHEVNSK 843

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           D+IS GALWELVRISRDCSREDIR LA+RTLTSSP  Q+EMRRLRI+
Sbjct: 844 DIISEGALWELVRISRDCSREDIRMLAYRTLTSSPTLQSEMRRLRIE 890

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FZ06|ARK3_ARATH Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/227 (85%), Positives = 210/227 (92%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQ++IVEAGGLTSLLMLL ++EDETIHRVAAGAIANLAMNETNQELIM QGGIGLLS+
Sbjct: 691 EANQQQIVEAGGLTSLLMLLKNTEDETIHRVAAGAIANLAMNETNQELIMDQGGIGLLSS 750

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TAANAEDPQTLRMVAGAIANLCGNDKLQ KLR EGGI ALLGMVRCGHPDVLAQVARGIA
Sbjct: 751 TAANAEDPQTLRMVAGAIANLCGNDKLQTKLRSEGGIAALLGMVRCGHPDVLAQVARGIA 810

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRASTQGTK G+SLLI+DGAL WIVQN+  E + IRRHIELALCHLAQHE NAK
Sbjct: 811 NFAKCESRASTQGTKRGKSLLIEDGALSWIVQNAKTETAAIRRHIELALCHLAQHEGNAK 870

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           +M+  GA+WELVRISRDCSREDIR+LAHRTLTSSP F  E+RRLR+D
Sbjct: 871 EMVKEGAMWELVRISRDCSREDIRSLAHRTLTSSPTFLTELRRLRVD 917

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPC6|ARK2_ARATH Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2

 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/228 (82%), Positives = 214/228 (93%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVEAGGLTSLLMLL S EDET+ RVAAGAIANLAMNE +Q+LI+ QGGI LLS 
Sbjct: 667 EANQEKIVEAGGLTSLLMLLRSYEDETVRRVAAGAIANLAMNEVSQQLIVDQGGISLLSL 726

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TAA+AEDPQTLRMVAGAIANLCGNDKLQ +L  +GGIKALLGMVRCGHPDVLAQVARGIA
Sbjct: 727 TAADAEDPQTLRMVAGAIANLCGNDKLQARLWSDGGIKALLGMVRCGHPDVLAQVARGIA 786

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRA+TQG K+GRSLLI+DGALPWIVQ++N+EA+PIRRHIELALCHLAQHEVNAK
Sbjct: 787 NFAKCESRATTQGVKSGRSLLIEDGALPWIVQHANDEAAPIRRHIELALCHLAQHEVNAK 846

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY 246
           +MISGGALWELVRIS++CSREDIR+LAHRTL+SSP F++E+RRL I +
Sbjct: 847 EMISGGALWELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGIQF 894

Involved in the control of epidermal-cell morphogenesis in roots and helical growth of roots by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules. Seems to be involved in the control of cell-file rotation (or twisting).

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DV28|ARK1_ORYSJ Armadillo repeat-containing kinesin-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0152900 PE=2 SV=2

 Score =  282 bits (722), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/220 (62%), Positives = 173/220 (78%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA 80
           NQEKIVE GGL +LL LL +SE+ TIHRV AGAIANLAMN +NQ LIM +GG  LL+  A
Sbjct: 726 NQEKIVEEGGLDALLSLLETSENTTIHRVTAGAIANLAMNGSNQGLIMNKGGARLLANIA 785

Query: 81  ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANF 140
           +   DPQTLRMVAGA+ANLCGN+KL + L+ +GGIKALLGM R GH +V+AQ+ARG+ANF
Sbjct: 786 SKTNDPQTLRMVAGALANLCGNEKLHVMLKQDGGIKALLGMFRTGHNEVIAQIARGMANF 845

Query: 141 AKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDM 200
           AKCESR  +QG + GRSLLI++G L W+V NS+  ++  RRHIELA CHLAQ+E NA+D+
Sbjct: 846 AKCESRVISQGHRKGRSLLIEEGVLNWMVANSSAFSASTRRHIELAFCHLAQNEDNARDI 905

Query: 201 ISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMR 240
           I  G + EL+RISR+ SR+D R LA + L S+PAF  E++
Sbjct: 906 ILTGGIKELLRISRESSRDDTRNLAKKALNSNPAFFKEIQ 945

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SV36|ARK1_ARATH Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 171/239 (71%), Gaps = 14/239 (5%)

Query: 11   VKSEDIRAQ--------------SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIAN 56
            +KSED+  Q              +NQ KIVE GG+ +LLML+ SS++ TI RVA+GAIAN
Sbjct: 811  IKSEDLEVQIQAVKVVANLAAEEANQVKIVEEGGVEALLMLVQSSQNSTILRVASGAIAN 870

Query: 57   LAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIK 116
            LAMNE +Q+LIM +GG  LL+      +DPQTLRMVAGA+ANLCGN+K    L+ E GIK
Sbjct: 871  LAMNEKSQDLIMNKGGAQLLAKMVTKTDDPQTLRMVAGALANLCGNEKFLKLLKEEEGIK 930

Query: 117  ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA 176
             LL M + G+ D++AQVARG+ANFAKCE+R   QG + GRSLL+++G L W+  NS+ ++
Sbjct: 931  GLLTMAQSGNIDIIAQVARGMANFAKCETREIMQGRRKGRSLLLEEGVLEWLTSNSHIDS 990

Query: 177  SPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAF 235
            +  +RHIELALCHLAQ+E NA D    G++ E+VRIS + SR+DIR+LA + L ++P F
Sbjct: 991  ASTQRHIELALCHLAQNEENANDFKRTGSVTEIVRISVESSRDDIRSLAKKILKTNPYF 1049

Involved in the control of root hair tip growth by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules. In vitro, binds to polymerized actin through ARM repeats, and to polymerized tubulin through N-terminal motor domain.

Arabidopsis thaliana (taxid: 3702)

>sp|Q59MN0|VAC8_CANAL Vacuolar protein 8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VAC8 PE=3 SV=3

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 17/216 (7%)

Query: 31  LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLR 90
           L  +L+LL S++ E + R A GA+ NLA+N  N+ LI+  GG+  L     +        
Sbjct: 89  LEPILILLQSADSE-VQRAACGALGNLAVNTENKILIVEMGGLEPLIRQMMSTNIEVQCN 147

Query: 91  MVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQ 150
            V G I NL   D  + K+   G +  L  + +     V       + N           
Sbjct: 148 AV-GCITNLATQDDNKSKIAKSGALIPLTKLAKSKDIRVQRNATGALLNMTH-------- 198

Query: 151 GTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA--LWE 208
            +   R  L++ GA+P +V   +NE + ++ +   AL ++A  EVN K + S     + +
Sbjct: 199 -SGENRQELVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQ 257

Query: 209 LVRISRDCSREDIR---TLAHRTLTSSPAFQAEMRR 241
           LV +  D     ++   TLA R L S   +Q E+ R
Sbjct: 258 LVHL-MDSPSPRVQCQATLALRNLASDSGYQVEIVR 292

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Vacuole inheritance has a role in the regulation of hyphal cell division.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 15/179 (8%)

Query: 27  EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP 86
           EAG L +L+ L   S  E + + AAGA+ NLA ++ N+E I   GG+  L   A ++ + 
Sbjct: 599 EAGALEALVQLT-QSPHEGVKQEAAGALWNLAFDDKNRESIAAFGGVEALVALAKSSSNA 657

Query: 87  QT--LRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCE 144
            T     VAGA+  L  ++   + +  EGGI  L+ +VR    DV    A  + N +   
Sbjct: 658 STGLQERVAGALWGLSVSEANSIAIGHEGGIPPLIALVRSEAEDVHETAAGALWNLS--- 714

Query: 145 SRASTQGTKTGRSL-LIDDGALPWIVQNSNNEASPIRRHI-ELALCHLAQHEVNAKDMI 201
                     G +L ++++G +  +VQ  ++  S + R +  LAL ++    ++   MI
Sbjct: 715 -------FNPGNALRIVEEGGVVALVQLCSSSVSKMARFMAALALAYMFDGRMDEYAMI 766

Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6BTZ4|VAC8_DEBHA Vacuolar protein 8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=VAC8 PE=3 SV=4

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 17/216 (7%)

Query: 31  LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLR 90
           L  +L+LL S++ E + R A GA+ NLA+N  N+ LI+  GG+  L     +        
Sbjct: 89  LEPILILLQSADSE-VQRAACGALGNLAVNNENKILIVEMGGLEPLIRQMMSTNIEVQCN 147

Query: 91  MVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQ 150
            V G I NL   D  + K+   G +  L  + +     V       + N           
Sbjct: 148 AV-GCITNLATQDDNKTKIAKSGALIPLAKLAKSKDIRVQRNATGALLNMTH-------- 198

Query: 151 GTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA--LWE 208
            +   R  L++ GA+P +V   +NE + ++ +   AL ++A  E+N K + +     + +
Sbjct: 199 -SGENRQELVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEMNRKKLSTTEPKLVSQ 257

Query: 209 LVRISRDCSREDIR---TLAHRTLTSSPAFQAEMRR 241
           LV +  D     ++   TLA R L S   +Q E+ R
Sbjct: 258 LVNL-MDSPSPRVQCQATLALRNLASDSGYQVEIVR 292

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|B7U179|ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 1 OS=Arabidopsis thaliana GN=ABAP1 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 30/227 (13%)

Query: 10  SVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELI 67
           ++++   R   N+ +IVE   L +L+++L  S+D T+H  A GAI NL  +  +  +E+I
Sbjct: 248 ALRTVSFRNDENKSQIVELNALPTLVLML-QSQDSTVHGEAIGAIGNLVHSSPDIKKEVI 306

Query: 68  MT---QGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDK-LQLKLRGEGGIKALLGMVR 123
                Q  IGLLS+T       +T R  A  I      D   ++ +   G I  L+ M+ 
Sbjct: 307 RAGALQPVIGLLSSTCL-----ETQREAALLIGQFAAPDSDCKVHIAQRGAITPLIKMLE 361

Query: 124 CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI 183
                V+   A  +   A+    A  Q     R      G +  ++   + +   ++ + 
Sbjct: 362 SSDEQVVEMSAFALGRLAQ---DAHNQAGIAHR------GGIISLLNLLDVKTGSVQHNA 412

Query: 184 ELALCHLAQHEVNAKDMISGGALWEL------VRISRDCSREDIRTL 224
             AL  LA +E N  D I  G + +L      V+ +RDC    +RTL
Sbjct: 413 AFALYGLADNEENVADFIKAGGIQKLQDDNFTVQPTRDCV---VRTL 456

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). In association with TCP24, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 56/246 (22%)

Query: 6   LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETN-Q 64
           L T++ K++D     N+ +IVE   L +L+++LGS ED  IH  A G I NL  +  + +
Sbjct: 222 LRTLAFKNDD-----NKNQIVECNALPTLILMLGS-EDAAIHYEAVGVIGNLVHSSPHIK 275

Query: 65  ELIMTQGG----IGLLSTTAANAEDPQTLRMVAGAIANLCGNDK-LQLKLRGEGGIKALL 119
           + ++T G     IGLLS+       P++ R  A  +      D   ++ +   G ++ L+
Sbjct: 276 KEVLTAGALQPVIGLLSSCC-----PESQREAALLLGQFASTDSDCKVHIVQRGAVRPLI 330

Query: 120 GMVRCGHPDV------------LAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW 167
            M++   PDV            LAQ A   A  A              R     +G+L  
Sbjct: 331 EMLQS--PDVQLKEMSAFALGRLAQDAHNQAGIAHSGGLGPLLKLLDSR-----NGSL-- 381

Query: 168 IVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWEL------VRISRDCSREDI 221
                +N A         AL  LA +E N  D I  G + +L      V+ ++DC  + +
Sbjct: 382 ----QHNAA--------FALYGLADNEDNVSDFIRVGGIQKLQDGEFIVQATKDCVSKTL 429

Query: 222 RTLAHR 227
           + L  +
Sbjct: 430 KRLEEK 435

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
224074733	836	predicted protein [Populus trichocarpa]	0.926	0.272	0.925	1e-121
449459660	906	PREDICTED: armadillo repeat-containing k	0.926	0.251	0.899	1e-119
255537143	917	Kinesin heavy chain, putative [Ricinus c	0.926	0.248	0.881	1e-117
224054055	865	predicted protein [Populus trichocarpa]	0.922	0.262	0.889	1e-116
356495631	884	PREDICTED: armadillo repeat-containing k	0.926	0.257	0.872	1e-116
357110853	898	PREDICTED: armadillo repeat-containing k	0.922	0.252	0.867	1e-114
222634919	868	hypothetical protein OsJ_20049 [Oryza sa	0.922	0.261	0.867	1e-114
75109919	891	RecName: Full=Armadillo repeat-containin	0.922	0.254	0.867	1e-114
255541342	896	Kinesin-II 85 kDa subunit, putative [Ric	0.922	0.253	0.859	1e-114
224130014	905	predicted protein [Populus trichocarpa]	0.922	0.250	0.867	1e-112

>gi|224074733|ref|XP_002304445.1| predicted protein [Populus trichocarpa] gi|222841877|gb|EEE79424.1| predicted protein [Populus trichocarpa]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/228 (92%), Positives = 218/228 (95%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVEAGGL SLLMLL SSEDETIHRVAAGAIANLAMNETNQELIM+QGGI LLS 
Sbjct: 609 ETNQEKIVEAGGLKSLLMLLRSSEDETIHRVAAGAIANLAMNETNQELIMSQGGIRLLSM 668

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TA +AEDPQTLRMVAGAIANLCGNDKLQ+KLRGEGGIKALLGMVRC HPDVLAQVARGIA
Sbjct: 669 TAGSAEDPQTLRMVAGAIANLCGNDKLQMKLRGEGGIKALLGMVRCRHPDVLAQVARGIA 728

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRASTQGTK GRSLLI+DG LPWIVQN+NNEASPIRRHIELALCHLAQHEVNAK
Sbjct: 729 NFAKCESRASTQGTKNGRSLLIEDGVLPWIVQNANNEASPIRRHIELALCHLAQHEVNAK 788

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY 246
           DMISGGALWELVRISRDCSREDIRTLAHRTLTSSP FQAEMRRL IDY
Sbjct: 789 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPTFQAEMRRLGIDY 836

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459660|ref|XP_004147564.1| PREDICTED: armadillo repeat-containing kinesin-like protein 3-like [Cucumis sativus] gi|449513383|ref|XP_004164312.1| PREDICTED: armadillo repeat-containing kinesin-like protein 3-like [Cucumis sativus]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/228 (89%), Positives = 218/228 (95%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQ+KIVEAGGLTSLLMLL S+EDETIHRVAAGAIANLAMNETNQELIM+QGGI LLS 
Sbjct: 679 ETNQQKIVEAGGLTSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLSM 738

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TAANA+DPQTLRMVAGAIANLCGNDKLQ+KLRGEGGI+ALLGMVRC HPDVLAQVARGIA
Sbjct: 739 TAANADDPQTLRMVAGAIANLCGNDKLQMKLRGEGGIRALLGMVRCRHPDVLAQVARGIA 798

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRASTQGTK G+S LI+DGALPWIVQN+NNEAS I+RHIELALCHLAQHEVNAK
Sbjct: 799 NFAKCESRASTQGTKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNAK 858

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY 246
           DMI GGALWELVRIS+DCSREDIRTLAHRTL SSP FQAEMRRLRIDY
Sbjct: 859 DMIIGGALWELVRISQDCSREDIRTLAHRTLISSPTFQAEMRRLRIDY 906

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537143|ref|XP_002509638.1| Kinesin heavy chain, putative [Ricinus communis] gi|223549537|gb|EEF51025.1| Kinesin heavy chain, putative [Ricinus communis]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/228 (88%), Positives = 218/228 (95%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVEAGGLTSLL LL SSEDETIHRVAAGAIANLAMNETNQELIM QGGI LLST
Sbjct: 690 ETNQEKIVEAGGLTSLLALLKSSEDETIHRVAAGAIANLAMNETNQELIMAQGGIRLLST 749

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TAANA+DPQTLRMVAGAIANLCGNDKLQ+KLRGEGGIKALLGMVRC HPDVLAQVARG+A
Sbjct: 750 TAANAQDPQTLRMVAGAIANLCGNDKLQMKLRGEGGIKALLGMVRCRHPDVLAQVARGVA 809

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRASTQG+K G+SLLI+DGALPWIV+N+NN+AS IRRHIELALCHLAQHEVN K
Sbjct: 810 NFAKCESRASTQGSKNGKSLLIEDGALPWIVENANNDASQIRRHIELALCHLAQHEVNVK 869

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY 246
           DMI+GGALWELVRISRDCSR+DIRTLAHRTLT SP FQAE++RLR++Y
Sbjct: 870 DMITGGALWELVRISRDCSRDDIRTLAHRTLTCSPTFQAELQRLRVEY 917

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054055|ref|XP_002298088.1| predicted protein [Populus trichocarpa] gi|222845346|gb|EEE82893.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/227 (88%), Positives = 212/227 (93%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVEAGGL SLL LL SSEDETI+RVAAGAIANLAMNETNQELIM QGGI LLS 
Sbjct: 639 ETNQEKIVEAGGLKSLLTLLRSSEDETIYRVAAGAIANLAMNETNQELIMAQGGIRLLSM 698

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TA NAEDPQTLRM+AGAIANLCGNDKLQ+KLR EGGIKALLGMVRC HPDVLAQVARGIA
Sbjct: 699 TAGNAEDPQTLRMIAGAIANLCGNDKLQMKLRSEGGIKALLGMVRCRHPDVLAQVARGIA 758

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRASTQGTKTGRSLLI+DG LPWIVQN+ +EAS IR H+ELALCHLAQHEVNAK
Sbjct: 759 NFAKCESRASTQGTKTGRSLLIEDGVLPWIVQNAKSEASQIRHHVELALCHLAQHEVNAK 818

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           DMISGGALWELVR+SRDC REDIRTLAHRTLTSSP FQAEMRRLRID
Sbjct: 819 DMISGGALWELVRVSRDCLREDIRTLAHRTLTSSPTFQAEMRRLRID 865

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495631|ref|XP_003516678.1| PREDICTED: armadillo repeat-containing kinesin-like protein 3-like [Glycine max]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/228 (87%), Positives = 214/228 (93%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQ KIVEAGGLTSLL LL SS+DETIHRVAAGAIANLAMNETNQELIM QGGI LLS 
Sbjct: 657 ETNQGKIVEAGGLTSLLNLLKSSQDETIHRVAAGAIANLAMNETNQELIMAQGGISLLSL 716

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TAANAEDPQTLRMVAGAIANLCGNDKLQ KLR EGG+KALLGMVRC HPDV AQVARGIA
Sbjct: 717 TAANAEDPQTLRMVAGAIANLCGNDKLQTKLRSEGGMKALLGMVRCRHPDVHAQVARGIA 776

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRAS+QGTK+GRS LI+DGALPWIVQN+NNEA+ +RRHIELALCHLAQHE+NA+
Sbjct: 777 NFAKCESRASSQGTKSGRSFLIEDGALPWIVQNANNEAASVRRHIELALCHLAQHEINAR 836

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRIDY 246
           DMISGGALWELVRISRDCSREDI+TLAHRTL SSP FQAEMRRLR++Y
Sbjct: 837 DMISGGALWELVRISRDCSREDIKTLAHRTLVSSPTFQAEMRRLRVNY 884

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357110853|ref|XP_003557230.1| PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Brachypodium distachyon]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/227 (86%), Positives = 215/227 (94%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVEAGGLTSLLMLL SSEDETI RVAAGAIANLAMNETNQ+LIM QGG+ LLS 
Sbjct: 671 EANQEKIVEAGGLTSLLMLLRSSEDETIRRVAAGAIANLAMNETNQDLIMAQGGVTLLSM 730

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TA++AEDPQTLRMVAGAIANLCGNDKLQ +LRGEGGIKALLGMV+CGHPDVLAQVARGIA
Sbjct: 731 TASDAEDPQTLRMVAGAIANLCGNDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIA 790

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRA+TQG K GRSLL+DDGALPWIV+N+NNEA+PIRRHIELALCHLAQHEVNAK
Sbjct: 791 NFAKCESRAATQGNKVGRSLLVDDGALPWIVKNANNEAAPIRRHIELALCHLAQHEVNAK 850

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           D++S GALWELVRISRDCSREDIR LA+RTLTSSP  Q+EMRRLRI+
Sbjct: 851 DIVSEGALWELVRISRDCSREDIRMLAYRTLTSSPILQSEMRRLRIE 897

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222634919|gb|EEE65051.1| hypothetical protein OsJ_20049 [Oryza sativa Japonica Group]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/227 (86%), Positives = 215/227 (94%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVEAGGLTSLLMLL SSEDETI RVAAGAIANLAMNETNQ+LIM QGG+ LLS 
Sbjct: 641 EANQEKIVEAGGLTSLLMLLRSSEDETIRRVAAGAIANLAMNETNQDLIMAQGGVSLLSM 700

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TA++AEDPQTLRMVAGAIANLCGNDKLQ +LRGEGGIKALLGMV+CGHPDVLAQVARGIA
Sbjct: 701 TASDAEDPQTLRMVAGAIANLCGNDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIA 760

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRA+TQG K G+SLLIDDGALPWIV+N+NNEA+PIRRHIELALCHLAQHEVN+K
Sbjct: 761 NFAKCESRAATQGNKVGKSLLIDDGALPWIVKNANNEAAPIRRHIELALCHLAQHEVNSK 820

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           D+IS GALWELVRISRDCSREDIR LA+RTLTSSP  Q+EMRRLRI+
Sbjct: 821 DIISEGALWELVRISRDCSREDIRMLAYRTLTSSPTLQSEMRRLRIE 867

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75109919|sp|Q5VQ09.1|ARK2_ORYSJ RecName: Full=Armadillo repeat-containing kinesin-like protein 2 gi|55296991|dbj|BAD68466.1| putative kinesin [Oryza sativa Japonica Group] gi|125553964|gb|EAY99569.1| hypothetical protein OsI_21543 [Oryza sativa Indica Group]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/227 (86%), Positives = 215/227 (94%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVEAGGLTSLLMLL SSEDETI RVAAGAIANLAMNETNQ+LIM QGG+ LLS 
Sbjct: 664 EANQEKIVEAGGLTSLLMLLRSSEDETIRRVAAGAIANLAMNETNQDLIMAQGGVSLLSM 723

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TA++AEDPQTLRMVAGAIANLCGNDKLQ +LRGEGGIKALLGMV+CGHPDVLAQVARGIA
Sbjct: 724 TASDAEDPQTLRMVAGAIANLCGNDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIA 783

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRA+TQG K G+SLLIDDGALPWIV+N+NNEA+PIRRHIELALCHLAQHEVN+K
Sbjct: 784 NFAKCESRAATQGNKVGKSLLIDDGALPWIVKNANNEAAPIRRHIELALCHLAQHEVNSK 843

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           D+IS GALWELVRISRDCSREDIR LA+RTLTSSP  Q+EMRRLRI+
Sbjct: 844 DIISEGALWELVRISRDCSREDIRMLAYRTLTSSPTLQSEMRRLRIE 890

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541342|ref|XP_002511735.1| Kinesin-II 85 kDa subunit, putative [Ricinus communis] gi|223548915|gb|EEF50404.1| Kinesin-II 85 kDa subunit, putative [Ricinus communis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/227 (85%), Positives = 215/227 (94%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQ++IVEAGGLTSLLMLL S EDET+ RVAAGAIANLAMNE NQELIM QGGI LLS 
Sbjct: 669 EANQQRIVEAGGLTSLLMLLRSFEDETVRRVAAGAIANLAMNEANQELIMAQGGISLLSM 728

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TAA+AEDPQTLRMVAGAIANLCGNDKLQ++LR EGGIKALLGMVRCGHPDVL+QVARGIA
Sbjct: 729 TAADAEDPQTLRMVAGAIANLCGNDKLQMRLRSEGGIKALLGMVRCGHPDVLSQVARGIA 788

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRASTQG K G+SLLI+DGALPWIVQN+N+E++PIRRHIELA+CHLAQHEVNAK
Sbjct: 789 NFAKCESRASTQGIKGGKSLLIEDGALPWIVQNANDESAPIRRHIELAICHLAQHEVNAK 848

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           DMISGGALWELVRISRDCSREDIR+LAHRTL +SP F+AEMRRLRI+
Sbjct: 849 DMISGGALWELVRISRDCSREDIRSLAHRTLNASPTFKAEMRRLRIE 895

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130014|ref|XP_002320731.1| predicted protein [Populus trichocarpa] gi|222861504|gb|EEE99046.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/227 (86%), Positives = 212/227 (93%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           ++NQEKIVE+GGLTSLLMLL S EDETI RVAAGAIANLAMNE NQELIM QGGI LLS 
Sbjct: 678 EANQEKIVESGGLTSLLMLLRSFEDETIRRVAAGAIANLAMNEANQELIMVQGGISLLSM 737

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           TAA+AEDPQTLRMVAGAIANLCGNDKLQ+KLR EGGI+ALLGM RCGHPDVL+QVARGIA
Sbjct: 738 TAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMERCGHPDVLSQVARGIA 797

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           NFAKCESRASTQG K+GRSLLI+DGALPWIVQN+NNEA+PIRRHIELALCHLAQ EVNAK
Sbjct: 798 NFAKCESRASTQGLKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQQEVNAK 857

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           +MISGGALWELVRISRDCSREDIRTLA RTL SS  F++EMRRLRI+
Sbjct: 858 EMISGGALWELVRISRDCSREDIRTLARRTLNSSSTFRSEMRRLRIE 904

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2025497	915	ARK2 "armadillo repeat kinesin	0.979	0.263	0.742	2.4e-92
TAIR|locus:2103351	928	ARABIDILLO-2 "AT3G60350" [Arab	0.654	0.173	0.271	1.1e-07
CGD|CAL0001835	585	VAC8 [Candida albicans (taxid:	0.768	0.323	0.290	2.4e-07
UNIPROTKB|Q59MN0	585	VAC8 "Vacuolar protein 8" [Can	0.768	0.323	0.290	2.4e-07
TAIR|locus:2055033	930	ARABIDILLO-1 "AT2G44900" [Arab	0.695	0.183	0.266	2.7e-05
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.772	0.328	0.25	7.2e-05
ASPGD|ASPL0000008980	579	AN12408 [Emericella nidulans (	0.772	0.328	0.233	0.00061

TAIR|locus:2025497 ARK2 "armadillo repeat kinesin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 179/241 (74%), Positives = 208/241 (86%)

Query:     6 LNTISVKSEDIRAQSNQEKIVEAXXXXXXXXXXXXXEDETIHRVAAGAIANLAMNETNQE 65
             ++ + V +     ++NQEKIVEA             EDET+ RVAAGAIANLAMNE +Q+
Sbjct:   675 IHAVKVVANLAAEEANQEKIVEAGGLTSLLMLLRSYEDETVRRVAAGAIANLAMNEVSQQ 734

Query:    66 LIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCG 125
             LI+ QGGI LLS TAA+AEDPQTLRMVAGAIANLCGNDKLQ +L  +GGIKALLGMVRCG
Sbjct:   735 LIVDQGGISLLSLTAADAEDPQTLRMVAGAIANLCGNDKLQARLWSDGGIKALLGMVRCG 794

Query:   126 HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL 185
             HPDVLAQVARGIANFAKCESRA+TQG K+GRSLLI+DGALPWIVQ++N+EA+PIRRHIEL
Sbjct:   795 HPDVLAQVARGIANFAKCESRATTQGVKSGRSLLIEDGALPWIVQHANDEAAPIRRHIEL 854

Query:   186 ALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
             ALCHLAQHEVNAK+MISGGALWELVRIS++CSREDIR+LAHRTL+SSP F++E+RRL I 
Sbjct:   855 ALCHLAQHEVNAKEMISGGALWELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGIQ 914

Query:   246 Y 246
             +
Sbjct:   915 F 915

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0048364 "root development" evidence=IMP

TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 47/173 (27%), Positives = 81/173 (46%)

Query:    50 AAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED--PQTLRMVAGAIANLCGNDKLQL 107
             AAG + NL++ E ++  I   GG+  L              L   AGA+ANL  +DK  +
Sbjct:   490 AAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFRWPHGCDGVLERAAGALANLAADDKCSM 549

Query:   108 KLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI--DDGA 164
             ++   GG+ AL+ + R C +     Q AR +AN A         G   G +  +  + GA
Sbjct:   550 EVARAGGVHALVMLARNCKYEGAQEQAARALANLA-------AHGDSNGNNAAVGQEAGA 602

Query:   165 LPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCS 217
             L  +VQ + +    +++    AL +LA  + N + + + G +  LV +++  S
Sbjct:   603 LEALVQLTQSPHEGVKQEAAGALWNLAFDDKNRESIAAFGGVEALVALAKSSS 655

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048527 "lateral root development" evidence=IGI;IMP

CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)]

 Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 59/203 (29%), Positives = 92/203 (45%)

Query:    43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN 102
             D  + R A GA+ NLA+N  N+ LI+  GG+  L     +         V G I NL   
Sbjct:   100 DSEVQRAACGALGNLAVNTENKILIVEMGGLEPLIRQMMSTNIEVQCNAV-GCITNLATQ 158

Query:   103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162
             D  + K+   G +  L  + +    D+  +V R  A  A      S +     R  L++ 
Sbjct:   159 DDNKSKIAKSGALIPLTKLAKS--KDI--RVQRN-ATGALLNMTHSGEN----RQELVNA 209

Query:   163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA--LWELVRISRDCS-RE 219
             GA+P +V   +NE + ++ +   AL ++A  EVN K + S     + +LV +    S R 
Sbjct:   210 GAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSPSPRV 269

Query:   220 DIR-TLAHRTLTSSPAFQAEMRR 241
               + TLA R L S   +Q E+ R
Sbjct:   270 QCQATLALRNLASDSGYQVEIVR 292

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IEA

GO:0071561 "nucleus-vacuole junction" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071562 "nucleus-vacuole junction assembly" evidence=IEA

GO:0071255 "CVT vesicle assembly" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

UNIPROTKB|Q59MN0 VAC8 "Vacuolar protein 8" [Candida albicans SC5314 (taxid:237561)]

 Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 59/203 (29%), Positives = 92/203 (45%)

Query:    43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN 102
             D  + R A GA+ NLA+N  N+ LI+  GG+  L     +         V G I NL   
Sbjct:   100 DSEVQRAACGALGNLAVNTENKILIVEMGGLEPLIRQMMSTNIEVQCNAV-GCITNLATQ 158

Query:   103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162
             D  + K+   G +  L  + +    D+  +V R  A  A      S +     R  L++ 
Sbjct:   159 DDNKSKIAKSGALIPLTKLAKS--KDI--RVQRN-ATGALLNMTHSGEN----RQELVNA 209

Query:   163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA--LWELVRISRDCS-RE 219
             GA+P +V   +NE + ++ +   AL ++A  EVN K + S     + +LV +    S R 
Sbjct:   210 GAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSPSPRV 269

Query:   220 DIR-TLAHRTLTSSPAFQAEMRR 241
               + TLA R L S   +Q E+ R
Sbjct:   270 QCQATLALRNLASDSGYQVEIVR 292

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 48/180 (26%), Positives = 79/180 (43%)

Query:    56 NLAMNETNQELIMTQGGIGLLSTTAAN-AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGG 114
             N +++    E +M  GGI LL   A +  E  Q+    A AIANL  N  +   +  EGG
Sbjct:   423 NASIDCGRAEAVMKDGGIRLLLELAKSWREGLQS--EAAKAIANLSVNANIAKSVAEEGG 480

Query:   115 IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN 174
             IK L G+ +  +  V  + A G+ N +  E   +      G   L+D      ++    N
Sbjct:   481 IKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKALVD------LIFRWPN 534

Query:   175 EASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA 234
                 +      AL +LA  +  + ++   G +  LV ++R+C  E ++  A R L +  A
Sbjct:   535 GCDGVLERAAGALANLAADDKCSMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAA 594

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0048527 "lateral root development" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 122 (48.0 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 51/204 (25%), Positives = 85/204 (41%)

Query:    42 EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG 101
             +D  I   A  A+ NLA+N  N+ LI+  GG+  L       ++ +      G I NL  
Sbjct:    97 QDPQIQVAACAALGNLAVNNENKLLIVEMGGLEPLINQMMG-DNVEVQCNAVGCITNLAT 155

Query:   102 NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID 161
              D  + K+   G +  L  + +  H  V       + N    E           R  L++
Sbjct:   156 RDDNKHKIATSGALIPLTKLAKSKHIRVQRNATGALLNMTHSEEN---------RKELVN 206

Query:   162 DGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA--LWELVRI-SRDCSR 218
              GA+P +V   ++    ++ +   AL ++A  E N K +       + +LV +     SR
Sbjct:   207 AGAVPVLVSLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSR 266

Query:   219 EDIR-TLAHRTLTSSPAFQAEMRR 241
                + TLA R L S  ++Q E+ R
Sbjct:   267 VKCQATLALRNLASDTSYQLEIVR 290

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)]

 Score = 114 (45.2 bits), Expect = 0.00061, P = 0.00061
 Identities = 48/206 (23%), Positives = 86/206 (41%)

Query:    43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN 102
             D  + R A+ A+ NLA+N  N+ LI+  GG+  L     +         V G I NL  +
Sbjct:   119 DIEVQRAASAALGNLAVNADNKVLIVALGGLAPLIKQMMSPNVEVQCNAV-GCITNLATH 177

Query:   103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD 162
             +  + K+   G +  L+ + +     V       + N    +           R  L++ 
Sbjct:   178 EDNKAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTHSDDN---------RQQLVNA 228

Query:   163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA--LWELVRISRDCSRED 220
             GA+P +VQ  ++    ++ +   AL ++A    N K +    +  +  LV +  D S   
Sbjct:   229 GAIPVLVQLLSSSDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLM-DSSTPK 287

Query:   221 IR---TLAHRTLTSSPAFQAEMRRLR 243
             ++    LA R L S   +Q E+ R +
Sbjct:   288 VQCQAALALRNLASDEKYQLEIVRAK 313


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      246       233   0.00086  113 3  11 22  0.41    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  162 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.30u 0.11s 17.41t   Elapsed:  00:00:01
  Total cpu time:  17.30u 0.11s 17.41t   Elapsed:  00:00:01
  Start:  Sat May 11 09:00:04 2013   End:  Sat May 11 09:00:05 2013

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000011 "vacuole inheritance" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZ06	ARK3_ARATH	No assigned EC number	0.8502	0.9227	0.2470	yes	no
Q5VQ09	ARK2_ORYSJ	No assigned EC number	0.8678	0.9227	0.2547	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-04

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 23  EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGG-----IGLLS 77
           E +++AGGL +L+ LL SS++    R AA A++NL+    +    + + G     + LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQ-REAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 78  TTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARG 136
           +     ED + ++    A+ NL  G +  +L +   GG+  L+ ++   + D+       
Sbjct: 60  S-----EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114

Query: 137 IANFA 141
           ++N A
Sbjct: 115 LSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 85  DPQTLRMVAGAIANLCGNDKLQLK-LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKC 143
           D    R  A A++NL   +   ++ +   GG+ AL+ +++    +V+      + N A  
Sbjct: 20  DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79

Query: 144 ESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192
                       + ++++ G +P +V   ++    I+++   AL +LA 
Sbjct: 80  PEDN--------KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 19 QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLA 58
            N++ ++EAG +  L+ LL SS DE +   AA A++NLA
Sbjct: 2  PENKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.92
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.91
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.9
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.89
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.89
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.87
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.86
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.85
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.8
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.75
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.75
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.71
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.57
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.56
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.55
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.55
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.53
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.52
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.38
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.35
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.29
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.28
KOG4646	173	consensus Uncharacterized conserved protein, conta	99.21
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.19
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.14
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.11
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.08
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.07
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.06
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.05
PRK09687	280	putative lyase; Provisional	99.03
KOG4646	173	consensus Uncharacterized conserved protein, conta	99.03
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.99
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.93
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.87
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.84
PRK09687	280	putative lyase; Provisional	98.81
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.7
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.66
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.66
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.57
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.55
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.45
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.45
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.44
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.44
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.35
PF05536	543	Neurochondrin: Neurochondrin	98.23
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.18
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	98.14
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.14
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.09
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.09
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.08
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	98.08
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.04
PF05536	543	Neurochondrin: Neurochondrin	98.04
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.98
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.93
TIGR02270	410	conserved hypothetical protein. Members are found	97.91
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.89
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.83
COG5369	743	Uncharacterized conserved protein [Function unknow	97.83
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.81
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.79
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.79
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.72
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.72
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.67
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.67
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.6
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.58
TIGR02270	410	conserved hypothetical protein. Members are found	97.57
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	97.55
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.52
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.47
PTZ00429	746	beta-adaptin; Provisional	97.46
PTZ00429	746	beta-adaptin; Provisional	97.44
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.39
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.37
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.37
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.34
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.34
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.29
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.22
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.19
COG5369	743	Uncharacterized conserved protein [Function unknow	97.15
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.12
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.08
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.08
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	97.0
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.0
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.98
KOG3036	293	consensus Protein involved in cell differentiation	96.93
KOG3036	293	consensus Protein involved in cell differentiation	96.89
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.85
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.82
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.77
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.7
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.67
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	96.63
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.48
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.46
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.4
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.4
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.37
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.23
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.23
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.18
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.14
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.11
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.08
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.06
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.97
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.91
KOG0212	675	consensus Uncharacterized conserved protein [Funct	95.83
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.78
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.77
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.7
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.65
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.61
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.6
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.52
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.52
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.49
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.45
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.45
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.4
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.29
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.19
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.07
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	95.04
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.01
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.91
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.89
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.87
KOG2025	892	consensus Chromosome condensation complex Condensi	94.76
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.6
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.59
KOG2025	892	consensus Chromosome condensation complex Condensi	94.48
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	94.47
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.37
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	94.31
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.24
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.01
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.99
KOG2062	929	consensus 26S proteasome regulatory complex, subun	93.91
KOG1824	1233	consensus TATA-binding protein-interacting protein	93.9
PF05004	309	IFRD: Interferon-related developmental regulator (	93.88
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.84
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.82
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.73
PRK14707	2710	hypothetical protein; Provisional	93.52
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.4
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.26
KOG1824	1233	consensus TATA-binding protein-interacting protein	93.24
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	93.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.83
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.79
KOG2032	533	consensus Uncharacterized conserved protein [Funct	92.71
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.7
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	92.68
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.66
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	92.43
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	92.36
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.34
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	92.29
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.13
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.08
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.95
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	91.93
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.84
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.65
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	91.53
KOG4231	763	consensus Intracellular membrane-bound Ca2+-indepe	91.3
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.2
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	90.87
KOG2137	700	consensus Protein kinase [Signal transduction mech	90.73
KOG2956	516	consensus CLIP-associating protein [General functi	90.69
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	90.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	90.62
KOG4653	982	consensus Uncharacterized conserved protein [Funct	90.37
KOG0301	745	consensus Phospholipase A2-activating protein (con	90.34
PRK14707	2710	hypothetical protein; Provisional	90.2
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.16
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	90.03
KOG4653	982	consensus Uncharacterized conserved protein [Funct	89.82
KOG0567	289	consensus HEAT repeat-containing protein [General	89.81
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	89.61
PF14663	115	RasGEF_N_2: Rapamycin-insensitive companion of mTO	89.6
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	89.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.32
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	89.05
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	88.89
KOG2259	823	consensus Uncharacterized conserved protein [Funct	88.83
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	87.42
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	87.16
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	86.74
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	86.66
PF05004	309	IFRD: Interferon-related developmental regulator (	86.51
PF07814	361	WAPL: Wings apart-like protein regulation of heter	86.37
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	86.01
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	85.96
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	85.89
KOG2956	516	consensus CLIP-associating protein [General functi	85.87
KOG2062	929	consensus 26S proteasome regulatory complex, subun	85.73
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	85.57
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	85.35
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	84.79
KOG2676	478	consensus Uncharacterized conserved protein [Funct	84.77
COG5116	926	RPN2 26S proteasome regulatory complex component [	84.73
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	84.69
KOG0301	745	consensus Phospholipase A2-activating protein (con	84.54
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	83.74
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	83.57
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	83.32
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	83.05
KOG1243	690	consensus Protein kinase [General function predict	82.84
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	82.81
KOG0567	289	consensus HEAT repeat-containing protein [General	82.65
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	82.31
cd03561	133	VHS VHS domain family; The VHS domain is present i	82.16
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.12
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	81.55
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	81.47
PF08216	108	CTNNBL: Catenin-beta-like, Arm-motif containing nu	81.43
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	81.24
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	80.81
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	80.25

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.8e-24  Score=179.33  Aligned_cols=229  Identities=19%  Similarity=0.198  Sum_probs=195.4

Q ss_pred             hhhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcC--cHHHHHHHHhc
Q 025930            5 ILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQG--GIGLLSTTAAN   82 (246)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g--~i~~L~~ll~~   82 (246)
                      +.++.-.+.|+...++||+.++.+|++|.|+++++++ |+.+|..|+.+++|++-+..+|+.+++.+  .+|.|++++.+
T Consensus       184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~  262 (550)
T KOG4224|consen  184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD  262 (550)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC
Confidence            3567778999999999999999999999999999997 88999999999999999999999999988  89999999999


Q ss_pred             CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           83 AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        83 ~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      + +++++-+|..||.|++.+.+.+..+++.|++|.++++++++.-...-.....++|++.++         -+...+.+.
T Consensus       263 ~-s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp---------lNe~lI~da  332 (550)
T KOG4224|consen  263 G-SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP---------LNEVLIADA  332 (550)
T ss_pred             C-ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc---------Ccccceecc
Confidence            4 678888999999999999999999999999999999999887666777778889999753         555667789


Q ss_pred             CChHHHHHcccCC-ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHH--HHHHHHHHHccChhHHHH
Q 025930          163 GALPWIVQNSNNE-ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSRED--IRTLAHRTLTSSPAFQAE  238 (246)
Q Consensus       163 g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~--~~~~A~~~L~~~~~~~~e  238 (246)
                      |++.+||++|..+ +++++.+|..+|++|+- ++.+++.|+++|+++.+++++.+++-..  ...++...|+.+..+++-
T Consensus       333 gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~  412 (550)
T KOG4224|consen  333 GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEA  412 (550)
T ss_pred             cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHH
Confidence            9999999999877 45699999999999976 8889999999999999999998654322  224445555655555555


Q ss_pred             HHHhhh
Q 025930          239 MRRLRI  244 (246)
Q Consensus       239 ~~~~~~  244 (246)
                      +-.-|+
T Consensus       413 lld~gi  418 (550)
T KOG4224|consen  413 LLDSGI  418 (550)
T ss_pred             HhhcCC
Confidence            544443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.92  E-value=3.2e-23  Score=205.35  Aligned_cols=217  Identities=20%  Similarity=0.263  Sum_probs=188.8

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---cchH-HHHHhcCcHHHHHHHHhc
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN---ETNQ-ELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~---~~~~-~~i~~~g~i~~L~~ll~~   82 (246)
                      +.++++.+++.++++|..|+..|+||+|+.+|+++ ++..++.|+.+|++|+.+   ++++ ..+++.|++|.|+.++++
T Consensus        77 nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~  155 (2102)
T PLN03200         77 NAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQP  155 (2102)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhC
Confidence            56689999999999999999999999999999998 788899999999999987   4445 456789999999999997


Q ss_pred             CC--ChHHHHHHHHHHHHhhCCchhH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930           83 AE--DPQTLRMVAGAIANLCGNDKLQ-LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL  159 (246)
Q Consensus        83 ~~--~~~~~~~a~~aL~~L~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l  159 (246)
                      ++  |.-+++.++.+|.|||...+++ ..+++.|++|.++.+++++++..+..|+.++.+++.        ..++.++.+
T Consensus       156 gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Las--------s~ee~~~aV  227 (2102)
T PLN03200        156 GNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMM--------AFESSISKV  227 (2102)
T ss_pred             CchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------CChHHHHHH
Confidence            53  3345678899999999877776 556899999999999999999999999999998885        446799999


Q ss_pred             HhCCChHHHHHcccCC-ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCC--------HHHHHHHHHHHH
Q 025930          160 IDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCS--------REDIRTLAHRTL  229 (246)
Q Consensus       160 ~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~--------~~~~~~~A~~~L  229 (246)
                      ++.|++|.|++++.++ ++.+|+.|+++|.+||. +++.++.++++|+++.|++++..++        +...++.|.++|
T Consensus       228 IeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwAL  307 (2102)
T PLN03200        228 LDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGAL  307 (2102)
T ss_pred             HHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHH
Confidence            9999999999999765 56999999999999998 6789999999999999999998533        245688999999


Q ss_pred             ccC
Q 025930          230 TSS  232 (246)
Q Consensus       230 ~~~  232 (246)
                      .++
T Consensus       308 sNI  310 (2102)
T PLN03200        308 ANI  310 (2102)
T ss_pred             HHH
Confidence            873

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.4e-23  Score=173.79  Aligned_cols=217  Identities=23%  Similarity=0.316  Sum_probs=200.5

Q ss_pred             hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED   85 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~   85 (246)
                      .+|.--+-|++..++||.++...|++.+|..+-++. |..+|+.+..+|.|++...++|+.++..|++|.|+.++++ .|
T Consensus       144 cnaVgCitnLaT~d~nk~kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d  221 (550)
T KOG4224|consen  144 CNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GD  221 (550)
T ss_pred             eeehhhhhhhhccccchhhhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CC
Confidence            355666778999999999999999999999987775 7778999999999999999999999999999999999999 57


Q ss_pred             hHHHHHHHHHHHHhhCCchhHHHHHhcC--CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           86 PQTLRMVAGAIANLCGNDKLQLKLRGEG--GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      ..++.+++.++.|++.+...++++.+.+  .++.|++++.++++.++-.|.-+|+|++.         +.+++..+.+.|
T Consensus       222 ~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas---------dt~Yq~eiv~ag  292 (550)
T KOG4224|consen  222 LDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS---------DTEYQREIVEAG  292 (550)
T ss_pred             hhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc---------cchhhhHHHhcC
Confidence            9999999999999999999999999988  99999999999999999999999999994         468889999999


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      .+|.++.+++++.-..-.....|+.|++.++-+..-|+++|.+.+|++++..+++++.+-+|..+|++..
T Consensus       293 ~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA  362 (550)
T KOG4224|consen  293 SLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA  362 (550)
T ss_pred             CchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence            9999999999888778788899999999999998999999999999999999999999999999998643

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.90  E-value=3.5e-22  Score=198.03  Aligned_cols=223  Identities=17%  Similarity=0.173  Sum_probs=182.6

Q ss_pred             hhhhHHhHhhc-cccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDI-RAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      .++.+.+.+++ .++++++.|++.|++|.|+++|+++ ++..++.|+++|++++.. ++++..+++.|++|.|++++++ 
T Consensus       422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-  499 (2102)
T PLN03200        422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-  499 (2102)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-
Confidence            45667777887 5588899999999999999999997 788899999999999865 6789999999999999999998 


Q ss_pred             CChHHHHHHHHHHHHhhCCchhHHH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc-------------
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQLK-LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST-------------  149 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~~~-l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~-------------  149 (246)
                      .+.++++.|+|+|.|++.++++.+. +.+.|++++|+++|+++++..++.|+.+|.||....+....             
T Consensus       500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~  579 (2102)
T PLN03200        500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPE  579 (2102)
T ss_pred             CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChh
Confidence            5789999999999999976655555 44789999999999999999999999999999753211110             


Q ss_pred             ----------------cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHH
Q 025930          150 ----------------QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRI  212 (246)
Q Consensus       150 ----------------~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~l  212 (246)
                                      .+.+..++.....|+++.|++++.++++++++.|+++|.+++. +++.+..++..|++++|+.+
T Consensus       580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L  659 (2102)
T PLN03200        580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL  659 (2102)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence                            0001111222357899999999999999999999999999987 66778999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHcc
Q 025930          213 SRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       213 l~~~~~~~~~~~A~~~L~~  231 (246)
                      ++.++.+. ++.|.++|.+
T Consensus       660 Lss~~~~v-~keAA~AL~n  677 (2102)
T PLN03200        660 LTNNTEAV-ATQSARALAA  677 (2102)
T ss_pred             HhcCChHH-HHHHHHHHHH
Confidence            99766654 5556666543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1e-21  Score=172.83  Aligned_cols=217  Identities=17%  Similarity=0.293  Sum_probs=187.6

Q ss_pred             hhhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhc
Q 025930            5 ILNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus         5 ~~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~   82 (246)
                      ....+|.+-|.|.. .+.-+.++++|.+|.++.++.++ ++.+++.|+++|+|++.+ +..|..+.++|+++.|+.++..
T Consensus       127 q~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~  205 (514)
T KOG0166|consen  127 QFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK  205 (514)
T ss_pred             HHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc
Confidence            34567888888654 44556777999999999999997 788999999999999988 7889999999999988877654


Q ss_pred             C------------------------------------------CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHH
Q 025930           83 A------------------------------------------EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALL  119 (246)
Q Consensus        83 ~------------------------------------------~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~  119 (246)
                      .                                          .|+++...|+|||++|+ ...+..+.+++.|+++.|+
T Consensus       206 ~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV  285 (514)
T KOG0166|consen  206 SDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLV  285 (514)
T ss_pred             ccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHH
Confidence            2                                          28899999999999999 5667778889999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhcc-CchhH
Q 025930          120 GMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQ-HEVNA  197 (246)
Q Consensus       120 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~-~~~~~  197 (246)
                      ++|.+.+..++..|++++.|++.        +++...+.+++.|++|.|..++... ...+++.|+|+|.|++. +++..
T Consensus       286 ~lL~~~~~~v~~PaLRaiGNIvt--------G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qi  357 (514)
T KOG0166|consen  286 DLLGHSSPKVVTPALRAIGNIVT--------GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQI  357 (514)
T ss_pred             HHHcCCCcccccHHHhhccceee--------ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999984        7899999999999999999999844 55699999999999966 77899


Q ss_pred             HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          198 KDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       198 ~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +.++++|.+|.|+++++.++ -+.|+.|.+++.+
T Consensus       358 qaVida~l~p~Li~~l~~~e-f~~rKEAawaIsN  390 (514)
T KOG0166|consen  358 QAVIDANLIPVLINLLQTAE-FDIRKEAAWAISN  390 (514)
T ss_pred             HHHHHcccHHHHHHHHhccc-hHHHHHHHHHHHh
Confidence            99999999999999999666 5566777777765

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.8e-21  Score=171.21  Aligned_cols=211  Identities=16%  Similarity=0.278  Sum_probs=185.3

Q ss_pred             HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930           22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC  100 (246)
Q Consensus        22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~  100 (246)
                      .+.++..|.||.+|..|...+++.++..|+++|.|++.+ .+.-+.+++.|.+|+|+.++.+ ++..++++|.|||.|++
T Consensus       102 i~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-~~~~v~eQavWALgNIa  180 (514)
T KOG0166|consen  102 IDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-PSADVREQAVWALGNIA  180 (514)
T ss_pred             HHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-CcHHHHHHHHHHHhccc
Confidence            566777799999999999877799999999999999888 5666788899999999999999 67999999999999999


Q ss_pred             -CCchhHHHHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHHhhccccc-ccc----------------------------
Q 025930          101 -GNDKLQLKLRGEGGIKALLGMVRCGHP-DVLAQVARGIANFAKCESR-AST----------------------------  149 (246)
Q Consensus       101 -~~~~~~~~l~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~nL~~~~~~-~~~----------------------------  149 (246)
                       ..+.++..+.+.|++++|+.++...+. .+..++.++|.|||...++ +..                            
T Consensus       181 gds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WA  260 (514)
T KOG0166|consen  181 GDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWA  260 (514)
T ss_pred             cCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence             567889999999999999999987655 6889999999999986432 111                            


Q ss_pred             -----cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 025930          150 -----QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRT  223 (246)
Q Consensus       150 -----~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~  223 (246)
                           .+.++.-+.+++.|++|.|+.+|....+.++..|+++++|++. ++...+.++.+|+++.|..++..+..+.+++
T Consensus       261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk  340 (514)
T KOG0166|consen  261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK  340 (514)
T ss_pred             HHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH
Confidence                 3668889999999999999999999999999999999999977 6677899999999999999999777777899


Q ss_pred             HHHHHHccCh
Q 025930          224 LAHRTLTSSP  233 (246)
Q Consensus       224 ~A~~~L~~~~  233 (246)
                      .|.+++.++.
T Consensus       341 EAcW~iSNIt  350 (514)
T KOG0166|consen  341 EACWTISNIT  350 (514)
T ss_pred             HHHHHHHHhh
Confidence            9999998744

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.87  E-value=1.7e-21  Score=161.56  Aligned_cols=215  Identities=16%  Similarity=0.239  Sum_probs=185.8

Q ss_pred             hhhhHHhHhhccccccHHH-HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIRAQSNQEK-IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      .-+.|++-|.+.......+ ++++|.+|.+|++|.++ ...+++.++++|+|++.| +..|..+.+.|+++.++.++.+.
T Consensus       133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss  211 (526)
T COG5064         133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS  211 (526)
T ss_pred             HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc
Confidence            3678999999876666655 45999999999999997 677899999999999988 67888899999999998887652


Q ss_pred             -------------------------------------------CChHHHHHHHHHHHHhhC-CchhHHHHHhcCCHHHHH
Q 025930           84 -------------------------------------------EDPQTLRMVAGAIANLCG-NDKLQLKLRGEGGIKALL  119 (246)
Q Consensus        84 -------------------------------------------~~~~~~~~a~~aL~~L~~-~~~~~~~l~~~g~i~~L~  119 (246)
                                                                 .|+++...|+||+++|+. ..+..+.+.+.|+.+.|+
T Consensus       212 ~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLv  291 (526)
T COG5064         212 AIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLV  291 (526)
T ss_pred             cchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHH
Confidence                                                       188898899999999994 456667888999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHH
Q 025930          120 GMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAK  198 (246)
Q Consensus       120 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~  198 (246)
                      .+|.+++..++.-+++.+.|+..        +++...+.+++.|+++++..+|.++...+|+.|||+|.|+.. +.+..+
T Consensus       292 ElLs~~sa~iqtPalR~vGNIVT--------G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiq  363 (526)
T COG5064         292 ELLSHESAKIQTPALRSVGNIVT--------GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQ  363 (526)
T ss_pred             HHhcCccccccCHHHHhhcCeee--------cCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHH
Confidence            99999999999999999999984        778889999999999999999999989999999999999965 888899


Q ss_pred             HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          199 DMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       199 ~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      .+++++.+|.|++++...+-+. ++.|.+++.
T Consensus       364 avid~nliPpLi~lls~ae~k~-kKEACWAis  394 (526)
T COG5064         364 AVIDANLIPPLIHLLSSAEYKI-KKEACWAIS  394 (526)
T ss_pred             HHHhcccchHHHHHHHHHHHHH-HHHHHHHHH
Confidence            9999999999999998655554 555566654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.86  E-value=2.1e-21  Score=161.01  Aligned_cols=212  Identities=17%  Similarity=0.266  Sum_probs=178.9

Q ss_pred             HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHH-HHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930           22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQE-LIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC  100 (246)
Q Consensus        22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~  100 (246)
                      .+.++++|.+|.++++|+.......+-.|+++|.|++.....+. .++++|++|.+++++.+ .+..+++++.|||.|++
T Consensus       107 Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s-~~~~V~eQavWALGNiA  185 (526)
T COG5064         107 IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS-TEDDVREQAVWALGNIA  185 (526)
T ss_pred             chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC-chHHHHHHHHHHhcccc
Confidence            68999999999999999665455567779999999999976665 45699999999999998 46889999999999999


Q ss_pred             C-CchhHHHHHhcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhhcccccccc----------------------------
Q 025930          101 G-NDKLQLKLRGEGGIKALLGMVRCGH--PDVLAQVARGIANFAKCESRAST----------------------------  149 (246)
Q Consensus       101 ~-~~~~~~~l~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~nL~~~~~~~~~----------------------------  149 (246)
                      . ++.++..+.+.|++.+++.++.+..  ..+.+++.++|.|||...+++-.                            
T Consensus       186 GDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~W  265 (526)
T COG5064         186 GDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACW  265 (526)
T ss_pred             CCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            5 5677899999999999999998654  47889999999999975332111                            


Q ss_pred             ------cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHH
Q 025930          150 ------QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIR  222 (246)
Q Consensus       150 ------~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~  222 (246)
                            .+..+.-+++++.|..+.|+.+|.+++..++..|++.++|+.. ++...+.++.+|+++.+..++. +..+.+|
T Consensus       266 AiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs-~~ke~ir  344 (526)
T COG5064         266 AISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIR  344 (526)
T ss_pred             HHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc-Chhhhhh
Confidence                  3457788899999999999999999999999999999999977 5566789999999999999997 4555789


Q ss_pred             HHHHHHHccChhH
Q 025930          223 TLAHRTLTSSPAF  235 (246)
Q Consensus       223 ~~A~~~L~~~~~~  235 (246)
                      +.|.+++.++..=
T Consensus       345 KEaCWTiSNITAG  357 (526)
T COG5064         345 KEACWTISNITAG  357 (526)
T ss_pred             hhhheeecccccC
Confidence            9999999875443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.85  E-value=1.8e-19  Score=166.05  Aligned_cols=222  Identities=15%  Similarity=0.168  Sum_probs=191.0

Q ss_pred             hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED   85 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~   85 (246)
                      ...+.++.|++.+..++.+++..|+++.|+.+|+++ +..+...++..|.+|+...+++..+.+.|.++.|..++.+ ++
T Consensus       267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s-~~  344 (708)
T PF05804_consen  267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS-EN  344 (708)
T ss_pred             HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC-CC
Confidence            456678999999999999999999999999999986 7788888999999999999999999999999999999998 57


Q ss_pred             hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh
Q 025930           86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL  165 (246)
Q Consensus        86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i  165 (246)
                      ..+...++++|.|||.+++++..+++.|++|.|+.++.++  ..+..+..+|.++|         .++++|..+...+++
T Consensus       345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS---------~dd~~r~~f~~TdcI  413 (708)
T PF05804_consen  345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLS---------MDDEARSMFAYTDCI  413 (708)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhc---------cCHhhHHHHhhcchH
Confidence            8899999999999999999999999999999999999865  45567899999999         457899999999999


Q ss_pred             HHHHHcccC-CChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHHHHHhhh
Q 025930          166 PWIVQNSNN-EASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRI  244 (246)
Q Consensus       166 ~~Lv~ll~~-~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~~~~~~  244 (246)
                      |.+++++.. +++++...+...+.|||.++.+.+.+.+.|+++.|++......++.    ..+.+.++.......+..-+
T Consensus       414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~  489 (708)
T PF05804_consen  414 PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV  489 (708)
T ss_pred             HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH
Confidence            999997654 4677888889999999999999999999999999999887544333    34566665555544444433

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.80  E-value=7.4e-18  Score=138.98  Aligned_cols=194  Identities=21%  Similarity=0.232  Sum_probs=166.7

Q ss_pred             HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc
Q 025930           24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND  103 (246)
Q Consensus        24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~  103 (246)
                      .+.+.+-+++|+.+|+...||.+++.|..++++.+..+.++..+.+.||++.+..++.+ +++.+++.|+++|.|++.+.
T Consensus         7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVND   85 (254)
T ss_pred             CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCCh
Confidence            34788899999999998889999999999999999999999999999999999999999 68999999999999999999


Q ss_pred             hhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930          104 KLQLKLRGEGGIKALLGMVRC--GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR  181 (246)
Q Consensus       104 ~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~  181 (246)
                      +++..+-.+  ++.+.+...+  .++.++..++++|+||+..         ++.+..+.  +.+|.++.++..++..+|.
T Consensus        86 en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~---------~~~~~~l~--~~i~~ll~LL~~G~~~~k~  152 (254)
T PF04826_consen   86 ENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLTVT---------NDYHHMLA--NYIPDLLSLLSSGSEKTKV  152 (254)
T ss_pred             hhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccCCC---------cchhhhHH--hhHHHHHHHHHcCChHHHH
Confidence            999887543  6666664443  3788999999999999953         46666665  4699999999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          182 HIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       182 ~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .++++|.||+.++...+.++.+++...++.++..+.+++....+.....+
T Consensus       153 ~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n  202 (254)
T PF04826_consen  153 QVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN  202 (254)
T ss_pred             HHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877666555444444433

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.75  E-value=1.8e-16  Score=146.32  Aligned_cols=210  Identities=16%  Similarity=0.188  Sum_probs=178.1

Q ss_pred             hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED   85 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~   85 (246)
                      +.+++.+++++...+||..+.+.|+|++|+.+++++ +..++..+.++|.||+.+++.|..+++.|.+|.|+.++.+.  
T Consensus       308 il~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--  384 (708)
T PF05804_consen  308 ILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--  384 (708)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--
Confidence            457789999999999999999999999999999986 77788999999999999999999999999999999999863  


Q ss_pred             hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930           86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA  164 (246)
Q Consensus        86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~  164 (246)
                       ..+..++.+|.++|.+++++..+...+++|.+++++- .+++.+...++.++.||+.         ++.+.+.+.+.|+
T Consensus       385 -~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~---------~~rnaqlm~~g~g  454 (708)
T PF05804_consen  385 -NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL---------NKRNAQLMCEGNG  454 (708)
T ss_pred             -chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc---------CHHHHHHHHhcCc
Confidence             2555799999999999999999999999999999875 4566677778888999994         4688889999899


Q ss_pred             hHHHHHcccCCChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          165 LPWIVQNSNNEASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      ++.|+........   ......+.|++.++ ..+..+.  +.+..|+.++..+++++..-.+.++|++.+
T Consensus       455 L~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  455 LQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            9999987755433   22457999999977 4554444  488889999988888888888888888764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=2.6e-16  Score=130.64  Aligned_cols=214  Identities=18%  Similarity=0.238  Sum_probs=181.1

Q ss_pred             ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChH---HHHHHHH
Q 025930           18 AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQ---TLRMVAG   94 (246)
Q Consensus        18 ~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~---~~~~a~~   94 (246)
                      ..++...|+..|++..|++.++.+-||......+.+|..++..++....|.+.||+..++.++.+..+.+   +.+.++.
T Consensus       230 ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ls  309 (461)
T KOG4199|consen  230 AHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLS  309 (461)
T ss_pred             hhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHH
Confidence            3456778999999999999999998888888899999999999999999999999999999998744433   4568889


Q ss_pred             HHHHhhCCchhHHHHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc
Q 025930           95 AIANLCGNDKLQLKLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS  172 (246)
Q Consensus        95 aL~~L~~~~~~~~~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll  172 (246)
                      .|+.|+.++.++..+++.|+.+.++.++-  +.+|.+.+.++.+++-||.        ..++.-..+++.|+-...++.+
T Consensus       310 lLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~L--------R~pdhsa~~ie~G~a~~avqAm  381 (461)
T KOG4199|consen  310 LLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCL--------RSPDHSAKAIEAGAADLAVQAM  381 (461)
T ss_pred             HHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHh--------cCcchHHHHHhcchHHHHHHHH
Confidence            99999999999999999999999999884  6789999999999999995        5678888888899999999998


Q ss_pred             cCC--ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc--CCHHHHHHHHHHHHccChhHHHHHH
Q 025930          173 NNE--ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD--CSREDIRTLAHRTLTSSPAFQAEMR  240 (246)
Q Consensus       173 ~~~--~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~A~~~L~~~~~~~~e~~  240 (246)
                      +..  ...+++++++.+.|+.. +.++++.+... |+..|++..+.  .+.+....+|.|-|....+.++||+
T Consensus       382 kahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~wt  453 (461)
T KOG4199|consen  382 KAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEWT  453 (461)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHhc
Confidence            655  67899999999999976 66676666655 55666666653  4566666777888889999999996

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=3.4e-15  Score=124.06  Aligned_cols=215  Identities=16%  Similarity=0.202  Sum_probs=182.2

Q ss_pred             hHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH----------HHHHhcCcHHHHHH
Q 025930            9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ----------ELIMTQGGIGLLST   78 (246)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~----------~~i~~~g~i~~L~~   78 (246)
                      .|+=+-+-.++-||+.+++.|+.+-+.+.+.......+.+..+++++-+..+++.|          +.|++.|+...|++
T Consensus       169 ~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~E  248 (461)
T KOG4199|consen  169 QWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTE  248 (461)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHH
Confidence            34445567889999999999999999977766433345677899999998876554          78888999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC-CCHH---HHHHHHHHHHHhhcccccccccCChh
Q 025930           79 TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC-GHPD---VLAQVARGIANFAKCESRASTQGTKT  154 (246)
Q Consensus        79 ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~---~~~~a~~~L~nL~~~~~~~~~~~~~~  154 (246)
                      .+.-+-|+.+...++.+|..|+-+.+..+.+.+.||++.|++++.+ .+.+   +.+.++.+|+-|+         ++++
T Consensus       249 al~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA---------G~Ds  319 (461)
T KOG4199|consen  249 ALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA---------GSDS  319 (461)
T ss_pred             HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh---------CCCc
Confidence            9998888999999999999999999999999999999999999985 3333   5578889999999         8889


Q ss_pred             hhHHHHhCCChHHHHHcc--cCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHc
Q 025930          155 GRSLLIDDGALPWIVQNS--NNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTLT  230 (246)
Q Consensus       155 ~~~~l~~~g~i~~Lv~ll--~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~  230 (246)
                      ++..+++.|+.+.++.++  +.++|.+...++.+++.||. .|++...+++.|+....++-++. +....+++.|...+.
T Consensus       320 vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IR  399 (461)
T KOG4199|consen  320 VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIR  399 (461)
T ss_pred             hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            999999999999999988  44589999999999999997 88999999999999999999976 456667777777776


Q ss_pred             cC
Q 025930          231 SS  232 (246)
Q Consensus       231 ~~  232 (246)
                      ++
T Consensus       400 Ni  401 (461)
T KOG4199|consen  400 NI  401 (461)
T ss_pred             HH
Confidence            53

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.57  E-value=1.8e-13  Score=100.10  Aligned_cols=116  Identities=28%  Similarity=0.477  Sum_probs=106.0

Q ss_pred             HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 025930           24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN  102 (246)
Q Consensus        24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~  102 (246)
                      .+++.|+++.|+++++++ ++.++..++.+|++++.+ ++.+..+++.|+++.+++++.+ +++.++..++++|.+++.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence            467899999999999986 678899999999999988 8899999999999999999998 5799999999999999965


Q ss_pred             c-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930          103 D-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA  141 (246)
Q Consensus       103 ~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~  141 (246)
                      + .....+.+.|+++.+++.+..++.++++.++.+|.||+
T Consensus        80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            5 56677788999999999999999999999999999997

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.56  E-value=2.1e-13  Score=99.66  Aligned_cols=118  Identities=21%  Similarity=0.382  Sum_probs=107.3

Q ss_pred             HHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 025930           66 LIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCE  144 (246)
Q Consensus        66 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~  144 (246)
                      .+++.|+++.+++++.+ .+..++..++++|.+++.+ ++....+++.|+++.+++++.++++.++..++.+|+|++.  
T Consensus         2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~--   78 (120)
T cd00020           2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA--   78 (120)
T ss_pred             hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc--
Confidence            46789999999999998 4688999999999999955 8888999999999999999999999999999999999995  


Q ss_pred             ccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          145 SRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                            +.+..+..+.+.|+++.++.++...+.++++.++++|.+|+.
T Consensus        79 ------~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          79 ------GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             ------CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence                  445778888899999999999999999999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.55  E-value=6e-14  Score=133.53  Aligned_cols=232  Identities=19%  Similarity=0.240  Sum_probs=187.8

Q ss_pred             ehh-hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC--------CC---HHHHHHHHHHHHHhcCCc-chHHHH-Hh
Q 025930            4 QIL-NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS--------ED---ETIHRVAAGAIANLAMNE-TNQELI-MT   69 (246)
Q Consensus         4 ~~~-~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~--------~~---~~~~~~a~~~L~~la~~~-~~~~~i-~~   69 (246)
                      |.+ +++.+|-.+++.+++|..+-+-|+++.+-+++.-.        +|   -.+++.|..+|.||++++ .|+..+ ..
T Consensus       313 H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~  392 (2195)
T KOG2122|consen  313 HQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ  392 (2195)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            344 77888999999999999999999999998877541        11   237788999999999884 456555 46


Q ss_pred             cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhcc--c
Q 025930           70 QGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKC--E  144 (246)
Q Consensus        70 ~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~--~  144 (246)
                      .|.++.++..|.+. .+++....++.|+||+.  +...++.+-+.|-+..|+.+. +...+..++.++.+||||+.+  +
T Consensus       393 rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  393 RGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             hhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence            78899999888873 46788899999999994  455677778899888888765 455667889999999999863  4


Q ss_pred             ccccc----------------------------------------cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          145 SRAST----------------------------------------QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       145 ~~~~~----------------------------------------~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                      ++..+                                        ....+.|+.+.+.+++..|++.|+++...+..++|
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC  551 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC  551 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence            44333                                        12478899999999999999999999999999999


Q ss_pred             HHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHH
Q 025930          185 LALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQA  237 (246)
Q Consensus       185 ~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~  237 (246)
                      ++||||+- +++..+.+.+.|+++-|..++. +.++.+..-+..+|+|.-.|++
T Consensus       552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIh-SKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIH-SKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhhhhhcCCHHHHHHHHhcccHHHHHHHHh-hhhhhhhhhHHHHHHHHhcCCc
Confidence            99999955 9999899999999999999998 5677777777777777666653

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.55  E-value=8e-13  Score=120.47  Aligned_cols=224  Identities=22%  Similarity=0.259  Sum_probs=167.2

Q ss_pred             hhhhHHhHhhcccccc-HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---cchHHHHHhcCcHHHHHHHHh
Q 025930            6 LNTISVKSEDIRAQSN-QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN---ETNQELIMTQGGIGLLSTTAA   81 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~---~~~~~~i~~~g~i~~L~~ll~   81 (246)
                      .++.+-+..+|+.++. |..+..-|+|+.||.+|++. ...+++.||++|.||...   ++|+-.|.++|||+.++.+++
T Consensus       251 snaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr  329 (717)
T KOG1048|consen  251 SNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLR  329 (717)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHH
Confidence            4566777777776654 44566789999999999996 778999999999999877   468999999999999999998


Q ss_pred             cCCChHHHHHHHHHHHHhhCCchh-------------------------------------------------------H
Q 025930           82 NAEDPQTLRMVAGAIANLCGNDKL-------------------------------------------------------Q  106 (246)
Q Consensus        82 ~~~~~~~~~~a~~aL~~L~~~~~~-------------------------------------------------------~  106 (246)
                      ...|.++++...++|+||++++..                                                       +
T Consensus       330 ~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR  409 (717)
T KOG1048|consen  330 HTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAR  409 (717)
T ss_pred             hhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHH
Confidence            755666766777777776655333                                                       3


Q ss_pred             HHHHh-cCCHHHHHHHhc------CCCHHHHHHHHHHHHHhhcccccccc------------------------------
Q 025930          107 LKLRG-EGGIKALLGMVR------CGHPDVLAQVARGIANFAKCESRAST------------------------------  149 (246)
Q Consensus       107 ~~l~~-~g~i~~L~~ll~------~~~~~~~~~a~~~L~nL~~~~~~~~~------------------------------  149 (246)
                      +++.+ .|.|+.|+..+.      ..+....++|..+++||+--...++.                              
T Consensus       410 ~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~  489 (717)
T KOG1048|consen  410 EQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKK  489 (717)
T ss_pred             HHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchh
Confidence            44432 356777776664      23455677888888888742110000                              


Q ss_pred             --------------------------------------------------------------cCChhhhHHH-HhCCChH
Q 025930          150 --------------------------------------------------------------QGTKTGRSLL-IDDGALP  166 (246)
Q Consensus       150 --------------------------------------------------------------~~~~~~~~~l-~~~g~i~  166 (246)
                                                                                    ......+..+ .++.++|
T Consensus       490 ~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~  569 (717)
T KOG1048|consen  490 RKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLP  569 (717)
T ss_pred             hhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCcc
Confidence                                                                          1124555555 7889999


Q ss_pred             HHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCH-----HHHHHHHHHHHcc
Q 025930          167 WIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSR-----EDIRTLAHRTLTS  231 (246)
Q Consensus       167 ~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~-----~~~~~~A~~~L~~  231 (246)
                      +|+.++..+++.+.+.++.+|.||+.+..+++.|. .++++.|++.+.++.+     +++-..+.-+|.+
T Consensus       570 ~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~n  638 (717)
T KOG1048|consen  570 PLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNN  638 (717)
T ss_pred             HHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHH
Confidence            99999999999999999999999999999976666 8999999999987665     5555555555554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.53  E-value=1.8e-12  Score=107.02  Aligned_cols=193  Identities=16%  Similarity=0.144  Sum_probs=156.0

Q ss_pred             hhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHH-HhcCCCh
Q 025930            8 TISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT-AANAEDP   86 (246)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~l-l~~~~~~   86 (246)
                      .+..+.+.+..+.+++.|.+.|+++.+..++..+ ++.++..|..+|.|++.+.+++..+-.  .++.+... .+..-|.
T Consensus        33 al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns  109 (254)
T PF04826_consen   33 ALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNS  109 (254)
T ss_pred             HHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCC
Confidence            4566778899999999999999999999999996 889999999999999999999998754  46666554 4443467


Q ss_pred             HHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930           87 QTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP  166 (246)
Q Consensus        87 ~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~  166 (246)
                      .++..++++|.||+..++.+..+..  .++.++.++.+++..++.++..+|.||+.         ++.....+...++++
T Consensus       110 ~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---------np~~~~~Ll~~q~~~  178 (254)
T PF04826_consen  110 EVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE---------NPDMTRELLSAQVLS  178 (254)
T ss_pred             HHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc---------CHHHHHHHHhccchh
Confidence            8888999999999977777666644  69999999999999999999999999995         467778888889999


Q ss_pred             HHHHcccCC-ChhHHHHHHHHHHHhccCchhH--HHHHhCCcHHHHHHHHh
Q 025930          167 WIVQNSNNE-ASPIRRHIELALCHLAQHEVNA--KDMISGGALWELVRISR  214 (246)
Q Consensus       167 ~Lv~ll~~~-~~~v~~~a~~aL~~La~~~~~~--~~i~~~g~i~~L~~ll~  214 (246)
                      .++.++... +.++-..++....|+..+-...  ........-..|..++.
T Consensus       179 ~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~  229 (254)
T PF04826_consen  179 SFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG  229 (254)
T ss_pred             HHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence            999999876 6788899999999996633322  22224556666775554

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.52  E-value=2.8e-13  Score=123.40  Aligned_cols=173  Identities=20%  Similarity=0.279  Sum_probs=147.0

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCchh
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDKL  105 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~~  105 (246)
                      -+|..+.+|.+. ++.+|..|+.-+-.++.. .+.|..+.+.|||+.|+.++.+ ...+++.+||+||.||.   .+.+|
T Consensus       234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCccc
Confidence            378889999987 788899999999999877 6788999999999999999998 57999999999999999   44579


Q ss_pred             HHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CC--------
Q 025930          106 QLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NE--------  175 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~--------  175 (246)
                      +-.+.+.++|+.++.+++. .|.++++.+.++|+||+++         +..+..++.. .++.|-+..- +.        
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~---------D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~  381 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN---------DALKMLIITS-ALSTLTDNVIIPHSGWEEEPA  381 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch---------hHHHHHHHHH-HHHHHHHhhcccccccCCCCc
Confidence            9999999999999999985 7899999999999999965         4666666644 4555544321 11        


Q ss_pred             -----ChhHHHHHHHHHHHhcc-CchhHHHHHh-CCcHHHHHHHHh
Q 025930          176 -----ASPIRRHIELALCHLAQ-HEVNAKDMIS-GGALWELVRISR  214 (246)
Q Consensus       176 -----~~~v~~~a~~aL~~La~-~~~~~~~i~~-~g~i~~L~~ll~  214 (246)
                           +.++-.++.+||.|++. ..+.|+.|.+ .|.++.|+.+++
T Consensus       382 ~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq  427 (717)
T KOG1048|consen  382 PRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ  427 (717)
T ss_pred             ccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence                 36788999999999988 8899999998 599999999998

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.38  E-value=1.1e-11  Score=118.55  Aligned_cols=179  Identities=18%  Similarity=0.181  Sum_probs=144.6

Q ss_pred             HHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcC-----------CChHHHHHHHHHHHHhh-CCchhHHHHH-hcCCH
Q 025930           49 VAAGAIANLAMNETNQELIMTQGGIGLLSTTAANA-----------EDPQTLRMVAGAIANLC-GNDKLQLKLR-GEGGI  115 (246)
Q Consensus        49 ~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~-----------~~~~~~~~a~~aL~~L~-~~~~~~~~l~-~~g~i  115 (246)
                      .|..+|..+++|+++|+.+-+.||+..+-+++.-.           .+..++.++..||.||+ .+..||..++ .-|.+
T Consensus       317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM  396 (2195)
T KOG2122|consen  317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM  396 (2195)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence            36666888899999999999999999988876431           13457999999999999 7788998887 56899


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CCChhHHHHHHHHHHHhc-cC
Q 025930          116 KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASPIRRHIELALCHLA-QH  193 (246)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a~~aL~~La-~~  193 (246)
                      ..++..|.+..+++.+-.+++|+||+|-       -+...++.+.+.|-+..|+.... ...+..-+..+.|||||+ ++
T Consensus       397 eavVAQL~s~peeL~QV~AsvLRNLSWR-------AD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc  469 (2195)
T KOG2122|consen  397 EAVVAQLISAPEELLQVYASVLRNLSWR-------ADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHC  469 (2195)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHhcccc-------ccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence            9999999999889999999999999994       44677888889999999988654 445567788899999995 47


Q ss_pred             chhHHHHHh-CCcHHHHHHHHhcC---CHHHHHHHHHHHHccChh
Q 025930          194 EVNAKDMIS-GGALWELVRISRDC---SREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       194 ~~~~~~i~~-~g~i~~L~~ll~~~---~~~~~~~~A~~~L~~~~~  234 (246)
                      .+|+..|.. .|++..|+.+|...   ..-.+.+-|..+|++-.+
T Consensus       470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS  514 (2195)
T KOG2122|consen  470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS  514 (2195)
T ss_pred             cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence            788888876 79999999999753   334455777777776433

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.35  E-value=1.3e-10  Score=105.57  Aligned_cols=180  Identities=13%  Similarity=0.129  Sum_probs=161.3

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcch-HHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETN-QELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL  105 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~  105 (246)
                      ..+..+.|...|.++ ++.++..++..|+++..+.+. ...+.+.+.++.++..+.+ +|..+.+.|..+|.+++.++..
T Consensus        75 ~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~  152 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPEG  152 (503)
T ss_pred             HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCchh
Confidence            567788899999996 889999999999999888554 5566678889999999988 6799999999999999988888


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930          106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL  185 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~  185 (246)
                      -+.++..+.+..|..++...++.++.++..++.+++.        .+++..+.+.+.|.++.++..+.++|.-++..++.
T Consensus       153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~--------~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnale  224 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS--------HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALE  224 (503)
T ss_pred             HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh--------cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence            7888888889999999988788999999999999985        55788999999999999999999999999999999


Q ss_pred             HHHHhccCchhHHHHHhCCcHHHHHHHHhcC
Q 025930          186 ALCHLAQHEVNAKDMISGGALWELVRISRDC  216 (246)
Q Consensus       186 aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~  216 (246)
                      .|..|+..+.+.+-+.+.|.++.|..++...
T Consensus       225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~  255 (503)
T PF10508_consen  225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDS  255 (503)
T ss_pred             HHHHHHcChhHHHHHHhCCHHHHHHHHHhcc
Confidence            9999999999999999999999999999764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.1e-10  Score=101.61  Aligned_cols=225  Identities=16%  Similarity=0.201  Sum_probs=170.7

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP   86 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~   86 (246)
                      .++.++.|+++...+|.+++..|.+|.|..++++.   ...--|..+|+.++.+++.+..+.....|+.+.+.+-++.+.
T Consensus       364 ~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~  440 (791)
T KOG1222|consen  364 ATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGS  440 (791)
T ss_pred             HHHHHhhhccccccccHHHhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            47889999999999999999999999999999874   223448899999999999999999999999998877666777


Q ss_pred             HHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh-cC-------------------------------------CCHH
Q 025930           87 QTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV-RC-------------------------------------GHPD  128 (246)
Q Consensus        87 ~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll-~~-------------------------------------~~~~  128 (246)
                      ++.........|+|.+..|.+.+++-.++..|++.. ++                                     .++.
T Consensus       441 ~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~  520 (791)
T KOG1222|consen  441 EVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSES  520 (791)
T ss_pred             eecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHH
Confidence            777666677788888888877776655666554421 11                                     1222


Q ss_pred             HHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--ChhHHHHHHHHHHHhccCchhHHHHHhCCcH
Q 025930          129 VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASPIRRHIELALCHLAQHEVNAKDMISGGAL  206 (246)
Q Consensus       129 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i  206 (246)
                      -...+.++++||...        +-+..+.+-+.+.+|++-..++++  ..++.....-+++.++.+.....-+..+|.+
T Consensus       521 F~~EClGtlanL~v~--------dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i  592 (791)
T KOG1222|consen  521 FGLECLGTLANLKVT--------DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLI  592 (791)
T ss_pred             HHHHHHHHHhhcccC--------CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccH
Confidence            334666888888753        356777777899999999999887  4567788888899999988887888889999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH-ccChhHHHHHHHhhh
Q 025930          207 WELVRISRDCSREDIRTLAHRTL-TSSPAFQAEMRRLRI  244 (246)
Q Consensus       207 ~~L~~ll~~~~~~~~~~~A~~~L-~~~~~~~~e~~~~~~  244 (246)
                      +.|+++++.++.++  +.....+ .+.+-.+||.+|-.+
T Consensus       593 ~tlieLL~a~QeDD--EfV~QiiyVF~Q~l~He~tr~~m  629 (791)
T KOG1222|consen  593 DTLIELLQACQEDD--EFVVQIIYVFLQFLKHELTRRLM  629 (791)
T ss_pred             HHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998755443  2223333 556666777766543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3.4e-10  Score=95.59  Aligned_cols=174  Identities=17%  Similarity=0.154  Sum_probs=149.4

Q ss_pred             HhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHH
Q 025930           11 VKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTL   89 (246)
Q Consensus        11 ~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~   89 (246)
                      -+..+..+-+|...++.-||+++++..+.++ +..++..|+++|+.++.+ +..+..+.+.|+.+.|+.++.+.++..++
T Consensus       106 ~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r  184 (342)
T KOG2160|consen  106 NLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVR  184 (342)
T ss_pred             HHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHH
Confidence            3445566778899999999999999999986 889999999999999877 88999999999999999999986667788


Q ss_pred             HHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930           90 RMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRC--GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP  166 (246)
Q Consensus        90 ~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~  166 (246)
                      ..|+.|++.+. +++.....+...++...|.+++.+  .+...+..++..+..|..        .....+..+...+...
T Consensus       185 ~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~--------~~~s~~d~~~~~~f~~  256 (342)
T KOG2160|consen  185 TKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ--------EDKSDEDIASSLGFQR  256 (342)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH--------hhhhhhhHHHHhhhhH
Confidence            89999999998 678889999999999999999998  577788999999999885        3344555666677778


Q ss_pred             HHHHcccCCChhHHHHHHHHHHHhccC
Q 025930          167 WIVQNSNNEASPIRRHIELALCHLAQH  193 (246)
Q Consensus       167 ~Lv~ll~~~~~~v~~~a~~aL~~La~~  193 (246)
                      .++.+....+.++++.++.++..+...
T Consensus       257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  257 VLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            888888888999999999988888653

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=99.21  E-value=1.6e-10  Score=84.65  Aligned_cols=125  Identities=14%  Similarity=0.168  Sum_probs=113.0

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      -+.++.|+.-++...+.+.++....-|+|.+.|+.|-..+.+.+.+..++.-++. .|+.+.+.+.+.|+|+|-++.+++
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccChHHHH
Confidence            4568899999998888889999999999999999999999999999999999998 689999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID  161 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~  161 (246)
                      .|.+.+++|..+..++++.......++.++.-|+.        +....|..+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~--------~~Rt~r~ell~  139 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF--------GERTERDELLS  139 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC--------cccchhHHhcc
Confidence            99999999999999999999999999999999995        44566666553

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.19  E-value=8.5e-10  Score=95.91  Aligned_cols=198  Identities=22%  Similarity=0.318  Sum_probs=162.6

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDE-TIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED   85 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~-~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~   85 (246)
                      ++..|-.+++  ...++.|...|+++.|+.++.+++-+ .++..|++.|-.+...+ |++.++..| ...++++.+..+.
T Consensus       160 aa~aV~~evA--q~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N~d~va~~~-~~~Il~lAK~~e~  235 (832)
T KOG3678|consen  160 AAAAVGREVA--QGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-NRDRVARIG-LGVILNLAKEREP  235 (832)
T ss_pred             chhhhhHHHH--HhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-hhhHHhhcc-chhhhhhhhhcCc
Confidence            4455555553  45789999999999999999997433 25777888888876554 888888776 6677777766566


Q ss_pred             hHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930           86 PQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA  164 (246)
Q Consensus        86 ~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~  164 (246)
                      ++.....++.|.++. ++++..+.++..|+++.++--.+..++.+...++-+|.|+..+       +.-+++..|++..+
T Consensus       236 ~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~-------~~~a~qrrmveKr~  308 (832)
T KOG3678|consen  236 VELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALH-------GGQAVQRRMVEKRA  308 (832)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhh-------chhHHHHHHHHhhh
Confidence            788889999999998 7788889999999999999888888899999999999998875       56788999999999


Q ss_pred             hHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930          165 LPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~  215 (246)
                      .++|..+....|+-+|.+||.+.+-|+.+.+....+..+|.+...--++.+
T Consensus       309 ~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~  359 (832)
T KOG3678|consen  309 AEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVAS  359 (832)
T ss_pred             hhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence            999999999899999999999999999988887777777776655555544

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.14  E-value=6e-09  Score=94.82  Aligned_cols=212  Identities=14%  Similarity=0.111  Sum_probs=160.6

Q ss_pred             HHhHhhcccccc-HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHH
Q 025930           10 SVKSEDIRAQSN-QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQT   88 (246)
Q Consensus        10 ~~~~~~~~~~~~-~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~   88 (246)
                      +.+.++..+.+. .+.+.+.+.++.++..++++ |..+...|+.+|.+++.++.....+...++++.|..++.. .+..+
T Consensus        99 ~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v  176 (503)
T PF10508_consen   99 KQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ-SSDIV  176 (503)
T ss_pred             HHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc-cCHHH
Confidence            335555444443 55667889999999999986 7888999999999999998888888888889999999987 46677


Q ss_pred             HHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHH
Q 025930           89 LRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW  167 (246)
Q Consensus        89 ~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~  167 (246)
                      +-.++.++.+++ .+++....+.+.|.++.++..+.++|.-++.+++.++..|+.         ++++.+.+.+.|+++.
T Consensus       177 R~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~---------~~~g~~yL~~~gi~~~  247 (503)
T PF10508_consen  177 RCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE---------TPHGLQYLEQQGIFDK  247 (503)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc---------ChhHHHHHHhCCHHHH
Confidence            888999999998 678888889999999999999999888899999999999994         4699999999999999


Q ss_pred             HHHcccCC--Ch---hHHHH-HHHHHHHhccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          168 IVQNSNNE--AS---PIRRH-IELALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       168 Lv~ll~~~--~~---~v~~~-a~~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      |+.++...  +|   .+... .....++++.. +..... .-...+..+.+++. +.+...+..|.++++.+.+
T Consensus       248 L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~-s~d~~~~~~A~dtlg~igs  319 (503)
T PF10508_consen  248 LSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLE-SQDPTIREVAFDTLGQIGS  319 (503)
T ss_pred             HHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHhC
Confidence            99999665  33   11212 23566677663 322111 11223334444444 5667778888888875443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.11  E-value=1.4e-09  Score=93.31  Aligned_cols=200  Identities=13%  Similarity=0.127  Sum_probs=136.8

Q ss_pred             HHHHHHhCC---HHHHHHHhcCC-CCHHHHHHHHHHHHHhcCC-cchHHHHHhc------CcHHHHHHHHhcCCChHHHH
Q 025930           22 QEKIVEAGG---LTSLLMLLGSS-EDETIHRVAAGAIANLAMN-ETNQELIMTQ------GGIGLLSTTAANAEDPQTLR   90 (246)
Q Consensus        22 ~~~i~~~g~---i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~-~~~~~~i~~~------g~i~~L~~ll~~~~~~~~~~   90 (246)
                      |..+++..+   ...++.+|+.- .++++.......+..+..+ +...+.+.+.      .-..+++.++.+ +|..+..
T Consensus        45 ~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~  123 (312)
T PF03224_consen   45 RRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQL  123 (312)
T ss_dssp             -----------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHH
T ss_pred             HHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHH
Confidence            444555433   66777777765 6778888889999998655 4455555442      135677777776 5889999


Q ss_pred             HHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930           91 MVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC----GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP  166 (246)
Q Consensus        91 ~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~  166 (246)
                      .++..|..+......+..-...+.++.++..+++    ++.+.+..++.+|.+|.         ..++.|..+.+.|+++
T Consensus       124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL---------~~~~~R~~f~~~~~v~  194 (312)
T PF03224_consen  124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL---------RSKEYRQVFWKSNGVS  194 (312)
T ss_dssp             HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH---------TSHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh---------CcchhHHHHHhcCcHH
Confidence            9999999998443332222224556777777764    45567789999999998         4579999999999999


Q ss_pred             HHHHcc------c-CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          167 WIVQNS------N-NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       167 ~Lv~ll------~-~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .+..++      . ..+.+++++++.++|.|+++++..+.+.+.+.++.|+++++....+.+-+.+..+++|
T Consensus       195 ~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N  266 (312)
T PF03224_consen  195 PLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN  266 (312)
T ss_dssp             HHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            999999      2 2367899999999999999999999999999999999999998888888999888876

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3e-08  Score=83.94  Aligned_cols=177  Identities=17%  Similarity=0.165  Sum_probs=144.3

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHH
Q 025930           43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGM  121 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~l  121 (246)
                      +..-+..|..-|..+..+-+|...+...||...++..+.+ .+..+++.|++.|...+ +||..+..+++.|+.+.|+..
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN-SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            5556777888888889998899999999999999997777 68999999999999988 789999999999999999999


Q ss_pred             hcCC-CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC--CChhHHHHHHHHHHHhcc-CchhH
Q 025930          122 VRCG-HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN--EASPIRRHIELALCHLAQ-HEVNA  197 (246)
Q Consensus       122 l~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~v~~~a~~aL~~La~-~~~~~  197 (246)
                      +.+. +.+.+.+|..++++|-.        ..+.+...+...++...|...+.+  .+...+..++..+..|.. +...+
T Consensus       175 ls~~~~~~~r~kaL~AissLIR--------n~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~  246 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIR--------NNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE  246 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHh--------cCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence            9854 56678999999999984        557888888888889999999988  467788888999999976 55555


Q ss_pred             HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          198 KDMISGGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       198 ~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      ..+...|....+..+... .+....+.+..++
T Consensus       247 d~~~~~~f~~~~~~l~~~-l~~~~~e~~l~~~  277 (342)
T KOG2160|consen  247 DIASSLGFQRVLENLISS-LDFEVNEAALTAL  277 (342)
T ss_pred             hHHHHhhhhHHHHHHhhc-cchhhhHHHHHHH
Confidence            555556777777777764 4444555555444

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=2.7e-09  Score=93.12  Aligned_cols=223  Identities=12%  Similarity=0.119  Sum_probs=173.4

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP   86 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~   86 (246)
                      ....++.|+|..-..-.+++..+++..|+..|+.+ +..+.......|-.|+.-.+|+..+.+.|.++.|+.++.. .++
T Consensus       282 va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~-~h~  359 (791)
T KOG1222|consen  282 VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI-QHP  359 (791)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC-CCH
Confidence            34567889988888888999999999999999986 6677777889999999999999999999999999999998 689


Q ss_pred             HHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930           87 QTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP  166 (246)
Q Consensus        87 ~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~  166 (246)
                      +++...+..++|++-+..++..++..|.+|.+..++.++.-  ...|...+--++         .++..+..+....+++
T Consensus       360 dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S---------~dD~~K~MfayTdci~  428 (791)
T KOG1222|consen  360 DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLS---------CDDDAKAMFAYTDCIK  428 (791)
T ss_pred             HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhc---------cCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987632  235666666777         4568888888888999


Q ss_pred             HHHHcccC-CChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHHHHHhhhc
Q 025930          167 WIVQNSNN-EASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID  245 (246)
Q Consensus       167 ~Lv~ll~~-~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~~~~~~~  245 (246)
                      .+...+-. .+.++-......-.|||.+..+.+.+.+..++..|++......+.-.    .+.+.+++...--.+++-++
T Consensus       429 ~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid  504 (791)
T KOG1222|consen  429 LLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID  504 (791)
T ss_pred             HHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH
Confidence            88775544 45666555544446889888888888888888887776654333322    44555555555445554444


Q ss_pred             C
Q 025930          246 Y  246 (246)
Q Consensus       246 ~  246 (246)
                      |
T Consensus       505 y  505 (791)
T KOG1222|consen  505 Y  505 (791)
T ss_pred             H
Confidence            4

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.06  E-value=3.1e-09  Score=92.51  Aligned_cols=204  Identities=21%  Similarity=0.229  Sum_probs=156.6

Q ss_pred             hhhhHHhHhh-ccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc
Q 025930            6 LNTISVKSED-IRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~   82 (246)
                      +--++++.++ -.+++.++.++++|+++.++-+++.. ||.+.++|+.+|+|++.+  ...++.+++...-++|+.+..+
T Consensus       240 R~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s  318 (832)
T KOG3678|consen  240 RSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS  318 (832)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc
Confidence            3445556655 56778899999999999999999996 899999999999999887  6789999999999999999888


Q ss_pred             CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           83 AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        83 ~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      . |+-++-.||-|.+-++++.+.-..+...|.+..+-.++.+.|+.--   ++--...+            .++.    .
T Consensus       319 k-Del~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F---ARD~hd~a------------QG~~----~  378 (832)
T KOG3678|consen  319 K-DELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRF---ARDAHDYA------------QGRG----P  378 (832)
T ss_pred             h-HHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchh---hhhhhhhh------------ccCC----h
Confidence            4 6777889999999999999998888888988877777777666521   11111112            1110    1


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhcc--Cchh-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVN-AKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .-++.|+.+|.+...+.+..++..++.-+.  ...+ .+.+.+-|+++.|.++.+ +.++...+.|.++|.-
T Consensus       379 d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaS-S~d~vaakfAseALtv  449 (832)
T KOG3678|consen  379 DDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVAS-SPDEVAAKFASEALTV  449 (832)
T ss_pred             HHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHH
Confidence            247888999987777777777776665544  3333 466677899999999998 6667778888888864

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.05  E-value=3.1e-08  Score=87.28  Aligned_cols=219  Identities=14%  Similarity=0.096  Sum_probs=159.4

Q ss_pred             hHHhHhhccccccHHHHHHhCCHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChH
Q 025930            9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSE-DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQ   87 (246)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~-~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~   87 (246)
                      +..+..+-..++.|..+.+.++++.|+..|+... +..++..++.+++-++.+++....+.+.+.++.++.+++...-++
T Consensus       165 v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEK  244 (429)
T cd00256         165 ARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEK  244 (429)
T ss_pred             HHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHH
Confidence            4677788888999999999999999999998754 557888899999999999887788888899999999999867788


Q ss_pred             HHHHHHHHHHHhhCCc-------hhHHHHHhcCCHHHHHHHhc---CCCHHHHHHHHHHHHHhhcc-cccccc-------
Q 025930           88 TLRMVAGAIANLCGND-------KLQLKLRGEGGIKALLGMVR---CGHPDVLAQVARGIANFAKC-ESRAST-------  149 (246)
Q Consensus        88 ~~~~a~~aL~~L~~~~-------~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~nL~~~-~~~~~~-------  149 (246)
                      +.+.++.++.|+...+       .....+++.|..+ ++..|.   -.|+++.+-.-..--.|... ....+.       
T Consensus       245 vvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El  323 (429)
T cd00256         245 VIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSEL  323 (429)
T ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8889999999998532       2334566777655 555554   24677654322111111110 000000       


Q ss_pred             ---------cC-C----hhhhHHHHhCC--ChHHHHHccc-CCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHH
Q 025930          150 ---------QG-T----KTGRSLLIDDG--ALPWIVQNSN-NEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVR  211 (246)
Q Consensus       150 ---------~~-~----~~~~~~l~~~g--~i~~Lv~ll~-~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~  211 (246)
                               ++ +    .++-..+.+++  .+..|+.++. ++|+.+-..||.=|+.++. +|.+|..+.+-|+=..+++
T Consensus       324 ~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~  403 (429)
T cd00256         324 RSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMR  403 (429)
T ss_pred             hcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHH
Confidence                     11 1    34455566554  3778899994 5578888889999999987 7788888888999999999


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 025930          212 ISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       212 ll~~~~~~~~~~~A~~~L  229 (246)
                      ++. +++++++..|..++
T Consensus       404 Lm~-h~d~~Vr~eAL~av  420 (429)
T cd00256         404 LLN-HEDPNVRYEALLAV  420 (429)
T ss_pred             Hhc-CCCHHHHHHHHHHH
Confidence            998 55677788777765

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK09687 putative lyase; Provisional

Probab=99.03  E-value=7e-09  Score=87.34  Aligned_cols=132  Identities=14%  Similarity=0.140  Sum_probs=70.7

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL  109 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l  109 (246)
                      .++.+..++++. ++.++..|+.+|+.+...+..     ....++.|..++.+.+++.++..|+.+|.+++......   
T Consensus        55 ~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---  125 (280)
T PRK09687         55 VFRLAIELCSSK-NPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---  125 (280)
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence            466667776664 677777788888877554322     11245666666554467788888888888875322110   


Q ss_pred             HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHH
Q 025930          110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCH  189 (246)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~  189 (246)
                       ....+..+...+.++++.++..++.+|..+..                   ..+++.|+.++.++++.+|..|+.+|..
T Consensus       126 -~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~  185 (280)
T PRK09687        126 -SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------------------EAAIPLLINLLKDPNGDVRNWAAFALNS  185 (280)
T ss_pred             -chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------------------HHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence             00012233334444444455555544443331                   1245555555555555555555555555


Q ss_pred             h
Q 025930          190 L  190 (246)
Q Consensus       190 L  190 (246)
                      +
T Consensus       186 ~  186 (280)
T PRK09687        186 N  186 (280)
T ss_pred             C
Confidence            4

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=99.03  E-value=7.6e-09  Score=75.89  Aligned_cols=150  Identities=16%  Similarity=0.131  Sum_probs=124.0

Q ss_pred             cHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930           72 GIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQG  151 (246)
Q Consensus        72 ~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  151 (246)
                      -+..|+.-.....+.+.+++...-|.|++.+|-|..++.+.++++..++.+..+++.+++.+++.|||+|         -
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC---------~   87 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC---------L   87 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc---------c
Confidence            3556666566667899999999999999999999999999999999999999999999999999999999         4


Q ss_pred             ChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          152 TKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       152 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      ++.+.+-|.+.+++|.++..+.++...+-..++.++..|+... ..|..+..--.++.+.++-. +...+.+.+|...+.
T Consensus        88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~-s~s~~~rnLa~~fl~  166 (173)
T KOG4646|consen   88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRE-SKSHDERNLASAFLD  166 (173)
T ss_pred             ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence            5788999999999999999999998889899999999999944 45677766555665555553 344456777777765


Q ss_pred             c
Q 025930          231 S  231 (246)
Q Consensus       231 ~  231 (246)
                      .
T Consensus       167 ~  167 (173)
T KOG4646|consen  167 K  167 (173)
T ss_pred             h
Confidence            3

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.99  E-value=1.2e-08  Score=87.48  Aligned_cols=197  Identities=15%  Similarity=0.132  Sum_probs=144.1

Q ss_pred             hhHHhHhhcccc-ccHHHHHH------hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHH
Q 025930            8 TISVKSEDIRAQ-SNQEKIVE------AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~i~~------~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll   80 (246)
                      .+.++.++...+ +..+.+.+      .....+++.++.++ |..++..|+..|..+....+.+..-...+.++.++..+
T Consensus        77 vL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L  155 (312)
T PF03224_consen   77 VLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWL  155 (312)
T ss_dssp             HHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHH
Confidence            345556664444 34444444      13689999988886 88899999999999976644443332245677777777


Q ss_pred             hcC---CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh------c-CCCHHHHHHHHHHHHHhhccccccccc
Q 025930           81 ANA---EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV------R-CGHPDVLAQVARGIANFAKCESRASTQ  150 (246)
Q Consensus        81 ~~~---~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll------~-~~~~~~~~~a~~~L~nL~~~~~~~~~~  150 (246)
                      ++.   ++.+.+..++.+|.+|...++.+..+.+.|+++.+..++      . ....+++.+++-+++.|+++       
T Consensus       156 ~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-------  228 (312)
T PF03224_consen  156 SSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-------  228 (312)
T ss_dssp             H-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-------
T ss_pred             HHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-------
Confidence            652   234566789999999999999999999999999999999      2 34577889999999999965       


Q ss_pred             CChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHh
Q 025930          151 GTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISR  214 (246)
Q Consensus       151 ~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~  214 (246)
                        ++..+.+.+.+.+|.|+++++.. .+.+-+.++.+|.||.....  ....|+.+|+.+.+-.+..
T Consensus       229 --~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  229 --PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             --HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             --HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence              58889999999999999999766 67899999999999988554  7888888888887776664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.93  E-value=3.1e-08  Score=85.50  Aligned_cols=219  Identities=13%  Similarity=0.162  Sum_probs=148.0

Q ss_pred             hHhhccccccHHHH----HHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC---
Q 025930           12 KSEDIRAQSNQEKI----VEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA---   83 (246)
Q Consensus        12 ~~~~~~~~~~~~~i----~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~---   83 (246)
                      ++..+.++--|..+    +++|.+.+|.+...++ |..+...++++|+|++.+ +++|..+.+.||-.+++..++..   
T Consensus        66 ~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~  144 (604)
T KOG4500|consen   66 LADRSKNEVERSLFRNYCIDAEALELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSK  144 (604)
T ss_pred             HHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhcccccc
Confidence            34444444444443    5678889999998886 677788899999999887 78999999999977666666531   


Q ss_pred             CC---hHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHh-------------------------------------
Q 025930           84 ED---PQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMV-------------------------------------  122 (246)
Q Consensus        84 ~~---~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll-------------------------------------  122 (246)
                      ++   ++....+++.|.|-. .+.+.+.++++.|+++.|...+                                     
T Consensus       145 d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl  224 (604)
T KOG4500|consen  145 DNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSL  224 (604)
T ss_pred             CCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchH
Confidence            22   355556777777776 5677788888888877443211                                     


Q ss_pred             --------c---CC--CH---HHH-------------------HHHHHHHHHhhcccccccc--------------cCCh
Q 025930          123 --------R---CG--HP---DVL-------------------AQVARGIANFAKCESRAST--------------QGTK  153 (246)
Q Consensus       123 --------~---~~--~~---~~~-------------------~~a~~~L~nL~~~~~~~~~--------------~~~~  153 (246)
                              .   .+  ++   ++.                   +.....+.++-...+.+..              ...+
T Consensus       225 ~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD  304 (604)
T KOG4500|consen  225 VFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD  304 (604)
T ss_pred             HHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence                    1   11  11   111                   1122222221110000000              0123


Q ss_pred             hhhHHHHhCC-ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc----CCHHHHHHHHHHH
Q 025930          154 TGRSLLIDDG-ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD----CSREDIRTLAHRT  228 (246)
Q Consensus       154 ~~~~~l~~~g-~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~A~~~  228 (246)
                      +.-+.+...+ ++..++.-+.++|......+..+|+|++.+++++..+++.|.+..|+.++-.    .++.+.+.++..+
T Consensus       305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA  384 (604)
T KOG4500|consen  305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA  384 (604)
T ss_pred             hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence            4444455444 7889999999999999999999999999999999999999999999999853    4566677788888


Q ss_pred             Hcc
Q 025930          229 LTS  231 (246)
Q Consensus       229 L~~  231 (246)
                      |.+
T Consensus       385 LRn  387 (604)
T KOG4500|consen  385 LRN  387 (604)
T ss_pred             HHh
Confidence            875

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=6.5e-08  Score=89.33  Aligned_cols=176  Identities=13%  Similarity=0.105  Sum_probs=144.1

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      .-.+|.|+.+|+...+.++...||++|.+|+.- ++.-..+|+.++||.|+.-|...+--.+-++++.||-.++..+.  
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--  287 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--  287 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence            445999999999998999999999999999877 88889999999999999877665667799999999999985432  


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                      ..+.+.|++..++.++..-+...++.|+.+..|+|..-      .+++..- +.  .++|.|-.++...+.+.-+..+.+
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi------~sd~f~~-v~--ealPlL~~lLs~~D~k~ies~~ic  358 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI------RSDEFHF-VM--EALPLLTPLLSYQDKKPIESVCIC  358 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCccchH-HH--HHHHHHHHHHhhccchhHHHHHHH
Confidence            56789999999999998888889999999999999742      1223222 22  479999999999999999999999


Q ss_pred             HHHhcc----CchhHHHHHhCCcHHHHHHHHh
Q 025930          187 LCHLAQ----HEVNAKDMISGGALWELVRISR  214 (246)
Q Consensus       187 L~~La~----~~~~~~~i~~~g~i~~L~~ll~  214 (246)
                      ++.++.    .++.-+.+...|.+....+++.
T Consensus       359 ~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls  390 (1051)
T KOG0168|consen  359 LTRIADGFQHGPDKLDQLCSHDLITNIQQLLS  390 (1051)
T ss_pred             HHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence            999954    4455577777777777777765

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.84  E-value=1.6e-07  Score=81.26  Aligned_cols=203  Identities=14%  Similarity=0.086  Sum_probs=153.2

Q ss_pred             ccccHHHHHHhC-CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc----CCChHHHHHH
Q 025930           18 AQSNQEKIVEAG-GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN----AEDPQTLRMV   92 (246)
Q Consensus        18 ~~~~~~~i~~~g-~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~a   92 (246)
                      .++.-+++-+.| .++.+++|+++. |...+..++-+++|++..+.+...+++.|.+..|+.++-.    ..|.+.+-.+
T Consensus       303 GDeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~  381 (604)
T KOG4500|consen  303 GDESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC  381 (604)
T ss_pred             CchHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence            344445566666 799999999995 7777888899999999999999999999999999987754    1345667688


Q ss_pred             HHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC-CChHHHHHc
Q 025930           93 AGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD-GALPWIVQN  171 (246)
Q Consensus        93 ~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-g~i~~Lv~l  171 (246)
                      +.||+|+.-...|+.++...|+...++.+++...|.+...-.++++.+--        +.+..-..+.++ ..++.|++-
T Consensus       382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d--------~qe~~a~eL~kn~~l~ekLv~W  453 (604)
T KOG4500|consen  382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD--------SQEYIACELAKNPELFEKLVDW  453 (604)
T ss_pred             HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh--------chHHHHHHHhcCHHHHHHHHHh
Confidence            99999999999999999999999999999999989999999999988771        112222333322 346777777


Q ss_pred             ccCCCh-hHHHHHHHHHHHhccC---chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          172 SNNEAS-PIRRHIELALCHLAQH---EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       172 l~~~~~-~v~~~a~~aL~~La~~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      .+++|- .+...+.+.+.-|-.+   .+....+-++|++..++.+... ++-..+.-|.-++.
T Consensus       454 sks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~-~hi~mqnEalVal~  515 (604)
T KOG4500|consen  454 SKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTK-NHINMQNEALVALL  515 (604)
T ss_pred             hhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHH-hhHHHhHHHHHHHH
Confidence            766654 5888888888888554   3445566689999999999873 44444444444443

>PRK09687 putative lyase; Provisional

Probab=98.81  E-value=6.3e-07  Score=75.55  Aligned_cols=172  Identities=14%  Similarity=0.115  Sum_probs=117.5

Q ss_pred             cccHHHHHHhCC----HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHH
Q 025930           19 QSNQEKIVEAGG----LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAG   94 (246)
Q Consensus        19 ~~~~~~i~~~g~----i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~   94 (246)
                      .+++....-.|.    ++.|+.+|.+. +..++..|+.+|..+....          .++.+..++.+ +|+.++..+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~L~~~L~d~-d~~vR~~A~~aL~~~~~~~----------~~~~l~~ll~~-~d~~vR~~A~~   76 (280)
T PRK09687          9 KASKEYSLYSQCKKLNDDELFRLLDDH-NSLKRISSIRVLQLRGGQD----------VFRLAIELCSS-KNPIERDIGAD   76 (280)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHhCC-CHHHHHHHHHHHHhcCcch----------HHHHHHHHHhC-CCHHHHHHHHH
Confidence            445555554444    89999999886 8888999999999886543          56777787777 68999999999


Q ss_pred             HHHHhhCCchhHHHHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc
Q 025930           95 AIANLCGNDKLQLKLRGEGGIKALLGM-VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN  173 (246)
Q Consensus        95 aL~~L~~~~~~~~~l~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~  173 (246)
                      +|..|-.....     ....++.|..+ +.++++.++..++.+|++++...        ...     ...+++.+...+.
T Consensus        77 aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--------~~~-----~~~a~~~l~~~~~  138 (280)
T PRK09687         77 ILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKN--------PLY-----SPKIVEQSQITAF  138 (280)
T ss_pred             HHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc--------ccc-----chHHHHHHHHHhh
Confidence            99998643322     12346777776 56788999999999999987421        100     0124566777788


Q ss_pred             CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          174 NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       174 ~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      ++++.||..++.+|..+.. +         .+++.|+.++.+ ++.++|..|..+|..
T Consensus       139 D~~~~VR~~a~~aLg~~~~-~---------~ai~~L~~~L~d-~~~~VR~~A~~aLg~  185 (280)
T PRK09687        139 DKSTNVRFAVAFALSVIND-E---------AAIPLLINLLKD-PNGDVRNWAAFALNS  185 (280)
T ss_pred             CCCHHHHHHHHHHHhccCC-H---------HHHHHHHHHhcC-CCHHHHHHHHHHHhc
Confidence            8899999999999986642 1         144455555542 222345555555543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=5e-07  Score=83.61  Aligned_cols=183  Identities=15%  Similarity=0.132  Sum_probs=144.7

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANL-AMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQ  106 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~  106 (246)
                      -+++|++-|+...|+..|..|+.-|+.+ .+. ++.-..|--.-.+|.|+.+++.+.+.++.-.||+||.+|| .-|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            3788898888876888888888777755 444 4343444444678999999998888999999999999999 568888


Q ss_pred             HHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL  185 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~  185 (246)
                      ..++++++||.|+.-|. =.-.++.++++.+|-.++.           .--.++.+.|++-..+..+.-=...+|..|+.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR-----------~H~~AiL~AG~l~a~LsylDFFSi~aQR~Ala  316 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR-----------RHPKAILQAGALSAVLSYLDFFSIHAQRVALA  316 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh-----------hccHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999988776 4668899999999999994           44456778999999998887668889999999


Q ss_pred             HHHHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 025930          186 ALCHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLA  225 (246)
Q Consensus       186 aL~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A  225 (246)
                      +-.|+|.  .++.-.-+.+  ++|.|..+++..+.+-+...+
T Consensus       317 iaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~  356 (1051)
T KOG0168|consen  317 IAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVC  356 (1051)
T ss_pred             HHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHH
Confidence            9999987  4444344555  899999999876665554433

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.66  E-value=6.2e-07  Score=80.98  Aligned_cols=164  Identities=15%  Similarity=0.096  Sum_probs=124.4

Q ss_pred             ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHH
Q 025930           20 SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIAN   98 (246)
Q Consensus        20 ~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~   98 (246)
                      .+|+.+.+.-....+....... |......|+..+-+++.. ...+..+....+..++++++.. ++..+...++++|.|
T Consensus       368 ~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~N  445 (678)
T KOG1293|consen  368 SLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICN  445 (678)
T ss_pred             hHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHH
Confidence            3444444444444444333333 566667777777777765 4455556677888999999976 567788899999999


Q ss_pred             hh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhh-HHHHhCCChHHHHHcccCCC
Q 025930           99 LC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGR-SLLIDDGALPWIVQNSNNEA  176 (246)
Q Consensus        99 L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~-~~l~~~g~i~~Lv~ll~~~~  176 (246)
                      +. .....+..+...|+|+.+..++.++++.++.++.++|+++.+.        +++.. ......=....++.+..+++
T Consensus       446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~--------~de~~k~~~~~ki~a~~i~~l~nd~d  517 (678)
T KOG1293|consen  446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN--------CDEEEKFQLLAKIPANLILDLINDPD  517 (678)
T ss_pred             HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc--------chHHHHHHHHHHhhHHHHHHHHhCCC
Confidence            98 6788899999999999999999999999999999999999974        23433 33333333557788889999


Q ss_pred             hhHHHHHHHHHHHhccC
Q 025930          177 SPIRRHIELALCHLAQH  193 (246)
Q Consensus       177 ~~v~~~a~~aL~~La~~  193 (246)
                      ..|++.+...|.||..+
T Consensus       518 ~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  518 WAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            99999999999999775

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.66  E-value=3.4e-06  Score=74.56  Aligned_cols=196  Identities=11%  Similarity=0.075  Sum_probs=145.9

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH-HHHHhc-----CcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-ELIMTQ-----GGIGLLSTTAANAEDPQTLRMVAGAIANLCG-  101 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~-~~i~~~-----g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-  101 (246)
                      .++..++.+++....+++.......+..+..+++.+ ..+.+.     +....++.++.. +|.-+...++..|..+.. 
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHhc
Confidence            568899999998777777888788888886664444 445553     335577778876 567788889999988862 


Q ss_pred             CchhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--Chh
Q 025930          102 NDKLQLKLRGEGGIKALLGMVRCG-HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASP  178 (246)
Q Consensus       102 ~~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~  178 (246)
                      .+.+.......-...-+...++++ +.+.+..++..+.+|.         ..+++|..+.+.++++.|+.++...  +.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL---------~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q  202 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL---------RVDEYRFAFVLADGVPTLVKLLSNATLGFQ  202 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh---------CCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence            222111100001223445555543 4677888889999988         4469999999999999999999764  568


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          179 IRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       179 v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      ++++++.++|-|+++++....+.+.+.++.|+++++.+..+.+-+.+..++.|.-+
T Consensus       203 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         203 LQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            99999999999999988878888899999999999998888888888888876433

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.57  E-value=9e-08  Score=56.43  Aligned_cols=40  Identities=45%  Similarity=0.630  Sum_probs=37.1

Q ss_pred             ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 025930           18 AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLA   58 (246)
Q Consensus        18 ~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la   58 (246)
                      ++++++.+++.|++|+|+++|+++ ++.+++.|+++|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence            468899999999999999999975 8999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.55  E-value=7.6e-06  Score=70.75  Aligned_cols=220  Identities=12%  Similarity=0.076  Sum_probs=158.2

Q ss_pred             hhHHhHhhccccccHHHHHHhCCHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh
Q 025930            8 TISVKSEDIRAQSNQEKIVEAGGLTSLLMLL-GSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP   86 (246)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll-~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~   86 (246)
                      +++-+.-+...+++|..++.++|+..++..+ ++..+-.+|-+.+.+++-|+.++...+.+...+.++.|.+++++..-+
T Consensus       177 ~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KE  256 (442)
T KOG2759|consen  177 AARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKE  256 (442)
T ss_pred             HHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            4456666778889999999999999999999 444466788889999999999998888888888999999999986678


Q ss_pred             HHHHHHHHHHHHhhCCc-------hhHHHHHhcCCHHHHHHHhc---CCCHHHHHHHHHHHHHhhcc-cccccc------
Q 025930           87 QTLRMVAGAIANLCGND-------KLQLKLRGEGGIKALLGMVR---CGHPDVLAQVARGIANFAKC-ESRAST------  149 (246)
Q Consensus        87 ~~~~~a~~aL~~L~~~~-------~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~nL~~~-~~~~~~------  149 (246)
                      ++.+-.+.++.|+....       .....++..++.+ .++.|.   -.|+++....-..-.-|-.. ....+.      
T Consensus       257 KV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k-~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sE  335 (442)
T KOG2759|consen  257 KVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLK-TLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSE  335 (442)
T ss_pred             HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            88889999999999544       3334556666554 555553   34666654332221111100 000000      


Q ss_pred             ------cCC---------hhhhHHHHhCC--ChHHHHHcccCC-ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHH
Q 025930          150 ------QGT---------KTGRSLLIDDG--ALPWIVQNSNNE-ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELV  210 (246)
Q Consensus       150 ------~~~---------~~~~~~l~~~g--~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~  210 (246)
                            .++         .++...+.+++  .+..|+.+|... +|.+-.-||.=|+.... +|+++..+.+.||-..++
T Consensus       336 l~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM  415 (442)
T KOG2759|consen  336 LRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVM  415 (442)
T ss_pred             HHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHH
Confidence                  011         34555566554  478899999776 58888888888888876 999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 025930          211 RISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       211 ~ll~~~~~~~~~~~A~~~L  229 (246)
                      +++. .++++++..|..+.
T Consensus       416 ~Lln-h~d~~Vry~ALlav  433 (442)
T KOG2759|consen  416 NLLN-HEDPEVRYHALLAV  433 (442)
T ss_pred             HHhc-CCCchHHHHHHHHH
Confidence            9998 55566777776554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.45  E-value=1.4e-05  Score=77.93  Aligned_cols=175  Identities=15%  Similarity=0.113  Sum_probs=102.1

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      +.+.++.|+..|.++ ++.+++.|+.+|+.+...          +.++.|...+++ +++.++..|+.+|..+....   
T Consensus       619 ~~~~~~~L~~~L~D~-d~~VR~~Av~~L~~~~~~----------~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~---  683 (897)
T PRK13800        619 DAPSVAELAPYLADP-DPGVRRTAVAVLTETTPP----------GFGPALVAALGD-GAAAVRRAAAEGLRELVEVL---  683 (897)
T ss_pred             cchhHHHHHHHhcCC-CHHHHHHHHHHHhhhcch----------hHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcc---
Confidence            456688999999875 899999999999987532          357888888876 67889888888887764211   


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc----cCChhhh----HHHHhCCChHHHHHcccCCChh
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST----QGTKTGR----SLLIDDGALPWIVQNSNNEASP  178 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~----~~~~~~~----~~l~~~g~i~~Lv~ll~~~~~~  178 (246)
                            ...+.|...|.++++.++..++.+|..+...+.....    ..++..|    ..+...+..+.|..++.++++.
T Consensus       684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~  757 (897)
T PRK13800        684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENRE  757 (897)
T ss_pred             ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHH
Confidence                  1124555666666666766666666554310000000    0111111    1122223345566677777778


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          179 IRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       179 v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +|..++.+|..+.....        ..++.|..+++++ +..+|..|..+|..
T Consensus       758 VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~-d~~VR~aA~~aLg~  801 (897)
T PRK13800        758 VRIAVAKGLATLGAGGA--------PAGDAVRALTGDP-DPLVRAAALAALAE  801 (897)
T ss_pred             HHHHHHHHHHHhccccc--------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence            88877777776644211        1234445555432 24455555555543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.45  E-value=1.2e-05  Score=78.37  Aligned_cols=169  Identities=21%  Similarity=0.193  Sum_probs=93.6

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      +....|+..|++. |+.++..|+.+|+.+..             .+.|..++.+ +++.++..++.+|..+.....    
T Consensus       714 ~~~~~l~~~L~D~-d~~VR~~Av~aL~~~~~-------------~~~l~~~l~D-~~~~VR~~aa~aL~~~~~~~~----  774 (897)
T PRK13800        714 GDAALFAAALGDP-DHRVRIEAVRALVSVDD-------------VESVAGAATD-ENREVRIAVAKGLATLGAGGA----  774 (897)
T ss_pred             CCHHHHHHHhcCC-CHHHHHHHHHHHhcccC-------------cHHHHHHhcC-CCHHHHHHHHHHHHHhccccc----
Confidence            4567888899885 88889999999887521             1233444444 455666666666655542211    


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccccc-ccc-----cCChhhhHHHH-------hCCChHHHHHcccCC
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESR-AST-----QGTKTGRSLLI-------DDGALPWIVQNSNNE  175 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-~~~-----~~~~~~~~~l~-------~~g~i~~Lv~ll~~~  175 (246)
                          ..++.|..+++++++.++..|+.+|.++...+.. ...     ..+...|....       ....++.|+.++.++
T Consensus       775 ----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~  850 (897)
T PRK13800        775 ----PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDP  850 (897)
T ss_pred             ----hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCC
Confidence                1244555555555555555555555554321000 000     00111111110       123467777777777


Q ss_pred             ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          176 ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       176 ~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      +..||..|+.+|..+..++.         ..+.|...+. +++..++..|.++|.
T Consensus       851 ~~~VR~~A~~aL~~~~~~~~---------a~~~L~~al~-D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        851 HLDVRKAAVLALTRWPGDPA---------ARDALTTALT-DSDADVRAYARRALA  895 (897)
T ss_pred             CHHHHHHHHHHHhccCCCHH---------HHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence            78888888888777632222         3456666666 456667777777764

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.44  E-value=3.6e-07  Score=53.82  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=37.9

Q ss_pred             hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      ++.++.+++.|++|.|+++++++++++++.|+++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            6889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.44  E-value=4.5e-06  Score=75.60  Aligned_cols=116  Identities=18%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-
Q 025930           25 IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-  102 (246)
Q Consensus        25 i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-  102 (246)
                      +-...++++||+++..+ +..++..+.++|.|+..+ .+.|..+.+.|||..+..++.+ .|+.++..+.|+|+++.-+ 
T Consensus       415 ~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~-~~~n~r~~~~~~Lr~l~f~~  492 (678)
T KOG1293|consen  415 LKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD-PDFNSRANSLWVLRHLMFNC  492 (678)
T ss_pred             CccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC-CCchHHHHHHHHHHHHHhcc
Confidence            33467799999999765 667788899999999887 7789999999999999999998 6789999999999999944 


Q ss_pred             -chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930          103 -DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK  142 (246)
Q Consensus       103 -~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  142 (246)
                       ++.+......=...-++.+...+++.+++.+...|+||..
T Consensus       493 de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  493 DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence             3334444443345667778889999999999999999974

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=3.6e-05  Score=73.79  Aligned_cols=186  Identities=15%  Similarity=0.164  Sum_probs=131.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC--chhH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN--DKLQ  106 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~  106 (246)
                      ++.+-.++++. ++..++.+..+|+.++.+-  .-+..+-  ..++.+++.+.+ +++.++-.|+.|+.-++.+  ++.+
T Consensus       350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~--~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iq  425 (1075)
T KOG2171|consen  350 FEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP--KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQ  425 (1075)
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHH
Confidence            55566677775 8887888888999888773  1222221  245566677777 7899999999999999943  5665


Q ss_pred             HHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH-h--CCChH-HHHHcccCCChhHHH
Q 025930          107 LKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI-D--DGALP-WIVQNSNNEASPIRR  181 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~-~--~g~i~-~Lv~ll~~~~~~v~~  181 (246)
                      ++..+ -..+.|+..+.+ +++.++..|+.++.|++..           +-..++ .  .+.+. .+..++.++.+.+++
T Consensus       426 k~~~e-~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-----------~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e  493 (1075)
T KOG2171|consen  426 KKHHE-RLPPALIALLDSTQNVRVQAHAAAALVNFSEE-----------CDKSILEPYLDGLMEKKLLLLLQSSKPYVQE  493 (1075)
T ss_pred             HHHHH-hccHHHHHHhcccCchHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence            55544 467788888875 4678999999999998851           111111 1  12233 334466778999999


Q ss_pred             HHHHHHHHhccCchhHHHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          182 HIELALCHLAQHEVNAKDMIS--GGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       182 ~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      .++.+|...|...+  +.++.  ...+|.|.++++..+.++.|.+..+++-++.-
T Consensus       494 ~vvtaIasvA~AA~--~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisl  546 (1075)
T KOG2171|consen  494 QAVTAIASVADAAQ--EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSL  546 (1075)
T ss_pred             HHHHHHHHHHHHHh--hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHH
Confidence            99999999987433  34443  46889999999988888888888887765433

>PF05536 Neurochondrin: Neurochondrin

Probab=98.23  E-value=5.3e-05  Score=69.62  Aligned_cols=153  Identities=17%  Similarity=0.212  Sum_probs=116.7

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc----chHHHHHhcCcHHHHHHHHhcCC------ChHHHHHHHHHHHHh
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNE----TNQELIMTQGGIGLLSTTAANAE------DPQTLRMVAGAIANL   99 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~----~~~~~i~~~g~i~~L~~ll~~~~------~~~~~~~a~~aL~~L   99 (246)
                      .++..+.+|++.+ ++-+-.+...+.++..+.    ..++.+.+.=|.+.+--+++++.      ....+.-|+..|..+
T Consensus         6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3677899999975 332444666666776653    23456777777777778887632      244577889999999


Q ss_pred             hCCchhHHHHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChh
Q 025930          100 CGNDKLQLKLRGEGGIKALLGMVRCGHP-DVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASP  178 (246)
Q Consensus       100 ~~~~~~~~~l~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~  178 (246)
                      |.+++....=---+-||.|++.+.+.+. ++...|..+|..++.+         +++++.+.+.|+++.|++.+.+ ++.
T Consensus        85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~---------~~G~~aLl~~g~v~~L~ei~~~-~~~  154 (543)
T PF05536_consen   85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS---------PEGAKALLESGAVPALCEIIPN-QSF  154 (543)
T ss_pred             cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC---------cHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence            9988776332222459999999987766 8999999999999954         6999999999999999999976 777


Q ss_pred             HHHHHHHHHHHhccC
Q 025930          179 IRRHIELALCHLAQH  193 (246)
Q Consensus       179 v~~~a~~aL~~La~~  193 (246)
                      ..+.|+.++.++...
T Consensus       155 ~~E~Al~lL~~Lls~  169 (543)
T PF05536_consen  155 QMEIALNLLLNLLSR  169 (543)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            889999999998663

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=8.6e-05  Score=68.83  Aligned_cols=176  Identities=15%  Similarity=0.155  Sum_probs=139.2

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhhCCch----
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLCGNDK----  104 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~~~~~----  104 (246)
                      .|++|++...+++-..-++.|+..|-.++..  .|..+. ..|++.|++.+. ++.|+++...++..+.++..+++    
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            4899999999988788899999998888754  344444 457788887765 67789999999999999984432    


Q ss_pred             --h-----------HHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC-CChHHHH
Q 025930          105 --L-----------QLKLR-GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD-GALPWIV  169 (246)
Q Consensus       105 --~-----------~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-g~i~~Lv  169 (246)
                        +           .+.++ ..+-|..++..+...|..++..++..+.++-.+       ...+.++.+... -+|..|+
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~-------r~~e~q~~ll~~P~gIS~lm  172 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSC-------RPTELQDALLVSPMGISKLM  172 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhc-------CCHHHHHHHHHCchhHHHHH
Confidence              1           22333 567788999999999999999999999998765       557888887754 4799999


Q ss_pred             HcccCCChhHHHHHHHHHHHhccCchhHHHHH-hCCcHHHHHHHHhc
Q 025930          170 QNSNNEASPIRRHIELALCHLAQHEVNAKDMI-SGGALWELVRISRD  215 (246)
Q Consensus       170 ~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~-~~g~i~~L~~ll~~  215 (246)
                      .++.+....+|-.+...|+.|..+....++++ =.++...|..++..
T Consensus       173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee  219 (970)
T KOG0946|consen  173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE  219 (970)
T ss_pred             HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998666555554 36777777777765

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=98.14  E-value=1.4e-05  Score=56.43  Aligned_cols=66  Identities=30%  Similarity=0.365  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhh-CCchhHHHHHhc
Q 025930           47 HRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLC-GNDKLQLKLRGE  112 (246)
Q Consensus        47 ~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~  112 (246)
                      +...+.+|+|++.. +.++..+++.||+|+++.... +..+|-+++.|..+++||+ .+++|++.+.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            55678899999876 789999999999999987665 4467999999999999999 789999887653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.14  E-value=6.5e-06  Score=56.62  Aligned_cols=87  Identities=26%  Similarity=0.377  Sum_probs=71.9

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccC
Q 025930          115 IKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQH  193 (246)
Q Consensus       115 i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~  193 (246)
                      |+.|++.+ .++++.++..++.+|+.+..                   ..++|.|..+++++++.+|..|+.+|..+.  
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-------------------PEAIPALIELLKDEDPMVRRAAARALGRIG--   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-------------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--
Confidence            57889988 78899999999988886541                   146999999999999999999999999884  


Q ss_pred             chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          194 EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       194 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                              ....++.|.+++.+++...++..|..+|+
T Consensus        60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --------DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                    22388999999998777888898888774

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.00023  Score=66.12  Aligned_cols=197  Identities=16%  Similarity=0.176  Sum_probs=150.8

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCcc-------hH----------HHHH
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS-EDETIHRVAAGAIANLAMNET-------NQ----------ELIM   68 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~~~-------~~----------~~i~   68 (246)
                      .+...++.+  +..+|..+ .+.|+++||+.|+.. .|+.....+..++.++..+++       .+          +.++
T Consensus        42 ~A~rgLKa~--srkYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fi  118 (970)
T KOG0946|consen   42 DAVRGLKAF--SRKYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFI  118 (970)
T ss_pred             HHHHHHHHH--HHHHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHH
Confidence            344555555  44555544 456789999999874 478888889999999966542       11          2333


Q ss_pred             -hcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh--CCchhHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 025930           69 -TQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--GNDKLQLKLRG-EGGIKALLGMVRCGHPDVLAQVARGIANFAKCE  144 (246)
Q Consensus        69 -~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~  144 (246)
                       ..+.|..++..+.. .|..++..+...+.++-  ...+.++.+.. .-+|..++++|.+..+.++..++-.|+.|+.  
T Consensus       119 k~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k--  195 (970)
T KOG0946|consen  119 KNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK--  195 (970)
T ss_pred             cCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc--
Confidence             35667788888887 57899999999998886  55677877764 5689999999998888899999999999994  


Q ss_pred             ccccccCChhhhHHHHhCCChHHHHHcccCC----ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc
Q 025930          145 SRASTQGTKTGRSLLIDDGALPWIVQNSNNE----ASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~----~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~  215 (246)
                            +++..++.+.=++++..|..++..+    ..-|-+.|+..|.||-. +..+..-|.+.+-+|.|.+++..
T Consensus       196 ------~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~  265 (970)
T KOG0946|consen  196 ------DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV  265 (970)
T ss_pred             ------cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence                  5566666666678999999999665    23688999999999976 66788888899999999988864

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.09  E-value=9.8e-05  Score=64.02  Aligned_cols=233  Identities=16%  Similarity=0.055  Sum_probs=149.5

Q ss_pred             hhHHhHhhccccccHHHHHHhCC-HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHH-hcCCC
Q 025930            8 TISVKSEDIRAQSNQEKIVEAGG-LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA-ANAED   85 (246)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~g~-i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll-~~~~~   85 (246)
                      +.++++.++.....+....+-.. ...|-..++++++....-.|+++|-.+...++.|..++..+|+..++..+ +...+
T Consensus       134 ~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~  213 (442)
T KOG2759|consen  134 SFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCG  213 (442)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcc
Confidence            45666666555444433322222 34455566665566677789999999999999999999999999998877 55556


Q ss_pred             hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930           86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA  164 (246)
Q Consensus        86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~  164 (246)
                      .+++=+.+.+++-|+-++...+.+-..+.++.|.+++++ ..+.+.+-++.+++|+....  ++.....+....|+..++
T Consensus       214 ~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~--~~~~~~k~~~~~mv~~~v  291 (442)
T KOG2759|consen  214 FQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG--PDRETKKDIASQMVLCKV  291 (442)
T ss_pred             hhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHHHHHHhcCc
Confidence            788888999999999888888888888999999999984 45678889999999998421  000000244466777776


Q ss_pred             hHHHHHcccCC--ChhHHHHHHHHHH-------Hhc---------------cCchh---------HHHHHh--CCcHHHH
Q 025930          165 LPWIVQNSNNE--ASPIRRHIELALC-------HLA---------------QHEVN---------AKDMIS--GGALWEL  209 (246)
Q Consensus       165 i~~Lv~ll~~~--~~~v~~~a~~aL~-------~La---------------~~~~~---------~~~i~~--~g~i~~L  209 (246)
                      .+.+-.|....  |+++....-..-.       .|+               .+|.+         ...+.+  ...+..|
T Consensus       292 ~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL  371 (442)
T KOG2759|consen  292 LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKIL  371 (442)
T ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHH
Confidence            66665555433  4444433322211       122               22222         222222  2456778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHc----cChhHHHHHHHh
Q 025930          210 VRISRDCSREDIRTLAHRTLT----SSPAFQAEMRRL  242 (246)
Q Consensus       210 ~~ll~~~~~~~~~~~A~~~L~----~~~~~~~e~~~~  242 (246)
                      +++++.+.++.+...|.--+.    ..|+-+.=+.++
T Consensus       372 ~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~  408 (442)
T KOG2759|consen  372 IKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY  408 (442)
T ss_pred             HHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh
Confidence            888887766666555553333    355544444443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.0006  Score=57.08  Aligned_cols=210  Identities=17%  Similarity=0.166  Sum_probs=141.2

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-------cCcHHHHHHH
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-------QGGIGLLSTT   79 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-------~g~i~~L~~l   79 (246)
                      .+.+.+-|++..++-++.+... .++.+++.+-.+ ....-+..|..|.|++.++..-..+..       .|........
T Consensus        61 ~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~  138 (353)
T KOG2973|consen   61 PAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAF  138 (353)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHH
Confidence            4566788888888888888887 777777777664 334567789999999999654443321       2334444455


Q ss_pred             HhcCCChH-HHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh--cCCCHHHH-HHHHHHHHHhhcccccccccCChhh
Q 025930           80 AANAEDPQ-TLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV--RCGHPDVL-AQVARGIANFAKCESRASTQGTKTG  155 (246)
Q Consensus        80 l~~~~~~~-~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll--~~~~~~~~-~~a~~~L~nL~~~~~~~~~~~~~~~  155 (246)
                      ..++.+.. -..+.+..+.|++..+..+..+.+...++ .-+++  .+.++.++ .-+++++.|.|+.         ...
T Consensus       139 ~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p-~~kll~ft~~~s~vRr~GvagtlkN~cFd---------~~~  208 (353)
T KOG2973|consen  139 CDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFP-DQKLLPFTSEDSQVRRGGVAGTLKNCCFD---------AKL  208 (353)
T ss_pred             hCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhh-HhhhhcccccchhhhccchHHHHHhhhcc---------chh
Confidence            55433321 23477888999999999998887666322 22222  23455565 4577999999963         234


Q ss_pred             hHHHHhCC--ChHHHH---------------------Hccc-----CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHH
Q 025930          156 RSLLIDDG--ALPWIV---------------------QNSN-----NEASPIRRHIELALCHLAQHEVNAKDMISGGALW  207 (246)
Q Consensus       156 ~~~l~~~g--~i~~Lv---------------------~ll~-----~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~  207 (246)
                      ...+.+.+  .+|.|+                     +++-     .+++.+|+.-+.+|.-||....+|+.++..|+-+
T Consensus       209 h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp  288 (353)
T KOG2973|consen  209 HEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP  288 (353)
T ss_pred             HHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH
Confidence            44444322  233322                     3332     1378999999999999999999999999999888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 025930          208 ELVRISRDCSREDIRTLAHRT  228 (246)
Q Consensus       208 ~L~~ll~~~~~~~~~~~A~~~  228 (246)
                      .+-.+=+..++++++++.-..
T Consensus       289 ilRElhk~e~ded~~~ace~v  309 (353)
T KOG2973|consen  289 ILRELHKWEEDEDIREACEQV  309 (353)
T ss_pred             HHHHHhcCCCcHHHHHHHHHH
Confidence            887777777777777665543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=98.08  E-value=1e-05  Score=47.13  Aligned_cols=40  Identities=40%  Similarity=0.604  Sum_probs=35.9

Q ss_pred             cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 025930           19 QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM   59 (246)
Q Consensus        19 ~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~   59 (246)
                      ++++..+++.|++++|+++++++ ++.+++.|+++|+|++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            45889999999999999999975 88899999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=2.1e-05  Score=71.96  Aligned_cols=177  Identities=14%  Similarity=0.154  Sum_probs=102.7

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      .++.+.+++.++ +|.+|+.|+.++.++... ++.   +... .++.+..++.+ .|+.+...|+.++..+-.++.....
T Consensus       115 l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d-~~~~V~~~a~~~l~~i~~~~~~~~~  188 (526)
T PF01602_consen  115 LIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSD-KDPSVVSAALSLLSEIKCNDDSYKS  188 (526)
T ss_dssp             HHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTH-SSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred             HHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccC-CcchhHHHHHHHHHHHccCcchhhh
Confidence            578888999886 889999999999999644 322   1111 47888888877 5788998999999988222221111


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                      +. ...++.|..++...++.++..+++.+..++..        .+.....   ...++.+..++.+.++.+...+..++.
T Consensus       189 ~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~--------~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~  256 (526)
T PF01602_consen  189 LI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPM--------EPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLII  256 (526)
T ss_dssp             HH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS--------SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHhhhcccccchHHHHHHHHHHHhcccC--------ChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            11 11244555555677778887777777777632        1222211   234445555555555555555555555


Q ss_pred             HhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       189 ~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      .+..++.     .-..+++.|.+++. +++..++..+.++|.
T Consensus       257 ~l~~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  257 KLSPSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLS  292 (526)
T ss_dssp             HHSSSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHH
T ss_pred             HhhcchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHH
Confidence            5544333     12224445555554 333334455554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF05536 Neurochondrin: Neurochondrin

Probab=98.04  E-value=0.00042  Score=63.78  Aligned_cols=218  Identities=15%  Similarity=0.091  Sum_probs=146.7

Q ss_pred             hhhhHHhHhhccccc----cHHHHHHhCCHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCcchH--HHHHhcCcH
Q 025930            6 LNTISVKSEDIRAQS----NQEKIVEAGGLTSLLMLLGSSE------DETIHRVAAGAIANLAMNETNQ--ELIMTQGGI   73 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~----~~~~i~~~g~i~~Li~ll~~~~------~~~~~~~a~~~L~~la~~~~~~--~~i~~~g~i   73 (246)
                      ..++.++.++....+    +++.|-++=|.+-|-.+|+++.      ....+.-|+.+|..++.+++..  ..++  +-|
T Consensus        23 fagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~--~~I  100 (543)
T PF05536_consen   23 FAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMV--SRI  100 (543)
T ss_pred             HHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHH--HHH
Confidence            456667777755544    2445778878888888888832      2445666999999999987665  3443  369


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCCh
Q 025930           74 GLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTK  153 (246)
Q Consensus        74 ~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~  153 (246)
                      |.|++++.+.++.++...++.+|..++..++.++.+++.|+++.|...+.+ .+...+.+..++.+++...+.+..   .
T Consensus       101 P~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~---~  176 (543)
T PF05536_consen  101 PLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSW---A  176 (543)
T ss_pred             HHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhh---h
Confidence            999999998665588889999999999999999999999999999999987 466788999999998753110000   0


Q ss_pred             hhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchh--HHHHHhCCc----HHHHHHHHhcCCHHHHHHHHHH
Q 025930          154 TGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVN--AKDMISGGA----LWELVRISRDCSREDIRTLAHR  227 (246)
Q Consensus       154 ~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~--~~~i~~~g~----i~~L~~ll~~~~~~~~~~~A~~  227 (246)
                      +..+.+  ...++.+...........+...+..|..+=...+.  .........    ...+..++++.-.+..|..|..
T Consensus       177 ~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~  254 (543)
T PF05536_consen  177 EDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALN  254 (543)
T ss_pred             hhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            111111  13456666666666677778888888887432211  111222233    3345556666556666777766


Q ss_pred             HHcc
Q 025930          228 TLTS  231 (246)
Q Consensus       228 ~L~~  231 (246)
                      +...
T Consensus       255 Laa~  258 (543)
T PF05536_consen  255 LAAS  258 (543)
T ss_pred             HHHH
Confidence            5543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.98  E-value=4.1e-05  Score=52.57  Aligned_cols=87  Identities=25%  Similarity=0.312  Sum_probs=67.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR  110 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~  110 (246)
                      ||.|++.|.+..++.++..|+.+|+++...          ..++.|..++++ +|+.++..++.+|..+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP----------EAIPALIELLKD-EDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH----------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC----------
Confidence            689999994445899999999999955321          358899999976 78999999999999872          


Q ss_pred             hcCCHHHHHHHhcCC-CHHHHHHHHHHHH
Q 025930          111 GEGGIKALLGMVRCG-HPDVLAQVARGIA  138 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~  138 (246)
                      ....++.|.+++.++ +..++..|+.+|+
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            234789999999865 4556788887764

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.0012  Score=63.40  Aligned_cols=134  Identities=19%  Similarity=0.167  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhh-CCchhHHHH----HhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930           88 TLRMVAGAIANLC-GNDKLQLKL----RGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID  161 (246)
Q Consensus        88 ~~~~a~~aL~~L~-~~~~~~~~l----~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~  161 (246)
                      -.+.++.||.|+. .+++....+    .-.|-.+.+...++ .+++.+++-|+..+.-+..+         .++...+..
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan---------~~Cv~~~a~ 1811 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN---------KECVTDLAT 1811 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc---------cHHHHHHHh
Confidence            4558899999997 567554443    23466777777776 46788999999998888854         588899999


Q ss_pred             CCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          162 DGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       162 ~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .|++..|+++|+ ..|..|..++.+|..|+++++..++-...|++..+..++-..++..+|+.|.++++.
T Consensus      1812 ~~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaK 1880 (2235)
T KOG1789|consen 1812 CNVLTTLLTLLH-SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAK 1880 (2235)
T ss_pred             hhHHHHHHHHHh-cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHH
Confidence            999999999997 568899999999999999999989999999999999999888889999999988864

>TIGR02270 conserved hypothetical protein

Probab=97.91  E-value=0.001  Score=59.04  Aligned_cols=89  Identities=12%  Similarity=-0.002  Sum_probs=64.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930           73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT  152 (246)
Q Consensus        73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  152 (246)
                      .+.|..++.+ .++.++..++.++..           ......+.+..+|+++++.++..|+++++.+..          
T Consensus       119 ~~~L~~~L~~-~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------  176 (410)
T TIGR02270       119 EPWLEPLLAA-SEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR----------  176 (410)
T ss_pred             HHHHHHHhcC-CChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------
Confidence            4455666655 456666555555544           112346788888989999999999999988773          


Q ss_pred             hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                               ...++.|...+.+.++.||..|..++..+..
T Consensus       177 ---------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~  207 (410)
T TIGR02270       177 ---------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS  207 (410)
T ss_pred             ---------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence                     2567778888999999999999998877743

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.89  E-value=3.2e-05  Score=45.02  Aligned_cols=40  Identities=23%  Similarity=0.407  Sum_probs=36.6

Q ss_pred             hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      ++.+..+.+.|+++.|+.++..+++++++.++++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3578889999999999999999999999999999999974

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.00092  Score=64.48  Aligned_cols=187  Identities=23%  Similarity=0.233  Sum_probs=129.5

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh------CCc
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC------GND  103 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~------~~~  103 (246)
                      .+..|+.-|-++ |-++++.|-.+|-++...+.         ..+.|..++....|++++..|+-.++.++      -+.
T Consensus         5 ~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~   74 (1075)
T KOG2171|consen    5 PLEQLLQQLLSP-DNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSA   74 (1075)
T ss_pred             HHHHHHHHhcCC-CchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCH
Confidence            456777777787 44568889999999887763         67888899988899999999999998887      344


Q ss_pred             hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930          104 KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       104 ~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                      +.+..+..    ..|.-..+...+.++.+.+.++..++..+       .++     -+-+.++.|.+..+++++..|+.|
T Consensus        75 e~~~siks----~lL~~~~~E~~~~vr~k~~dviAeia~~~-------l~e-----~WPell~~L~q~~~S~~~~~rE~a  138 (1075)
T KOG2171|consen   75 EVQQSIKS----SLLEIIQSETEPSVRHKLADVIAEIARND-------LPE-----KWPELLQFLFQSTKSPNPSLRESA  138 (1075)
T ss_pred             HHHHHHHH----HHHHHHHhccchHHHHHHHHHHHHHHHhc-------ccc-----chHHHHHHHHHHhcCCCcchhHHH
Confidence            55555533    23333445667889999999999998642       122     345679999999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc-Ch---hHHHHHHHhh
Q 025930          184 ELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS-SP---AFQAEMRRLR  243 (246)
Q Consensus       184 ~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~-~~---~~~~e~~~~~  243 (246)
                      ...|+.+...-.+...=--....+-+.+-+.+++.. +|.+|.+++.. .+   ..+.++++.+
T Consensus       139 l~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~  201 (1075)
T KOG2171|consen  139 LLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFR  201 (1075)
T ss_pred             HHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            999999976333321100001233344444555666 88888888853 22   2355665543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.00011  Score=65.64  Aligned_cols=203  Identities=12%  Similarity=0.061  Sum_probs=139.3

Q ss_pred             ehhhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHh
Q 025930            4 QILNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAA   81 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~   81 (246)
                      |+.+|.-.++.++.+ .-.|.-+.+..+.++|++.|+.+ +-.+.--+...++|.... ...+..+.+.|.+..|++++.
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~  483 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence            455566666666433 12344455677899999999875 333333477888888655 778899999999999999998


Q ss_pred             cCCChHHHHHHHHHHHHhhCC-c-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930           82 NAEDPQTLRMVAGAIANLCGN-D-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL  159 (246)
Q Consensus        82 ~~~~~~~~~~a~~aL~~L~~~-~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l  159 (246)
                      +. |..++.+..|.++++..+ . +.+-.+...-++..++++...++..++.++...|+|+....     +.+.+.++.+
T Consensus       484 sK-DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~-----~knEkskdv~  557 (743)
T COG5369         484 SK-DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT-----SKNEKSKDVF  557 (743)
T ss_pred             cc-hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc-----ccccccceeE
Confidence            74 678899999999999833 2 33444556667888999999999999999999999997521     1112233333


Q ss_pred             HhCC----ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHh--CCcHHHHHHHH
Q 025930          160 IDDG----ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMIS--GGALWELVRIS  213 (246)
Q Consensus       160 ~~~g----~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll  213 (246)
                      .+..    ..+.|+.-+...+|-.....+..|.+++...++.+.++.  ...+..+.+++
T Consensus       558 ~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         558 IKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             EecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            3221    355677777777887777789999988775555444442  34444444444

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.81  E-value=0.0017  Score=59.39  Aligned_cols=177  Identities=13%  Similarity=0.137  Sum_probs=115.3

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      -+.+..++++.+ ++...++-+--++..+...++.--.+    .+..+.+=+.+ +++.++..|+.+|.+++ +++....
T Consensus        42 ~~~~~vi~l~~s-~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~-~n~~~~~lAL~~l~~i~-~~~~~~~  114 (526)
T PF01602_consen   42 FLFMEVIKLISS-KDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNS-PNPYIRGLALRTLSNIR-TPEMAEP  114 (526)
T ss_dssp             STHHHHHCTCSS-SSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCS-SSHHHHHHHHHHHHHH--SHHHHHH
T ss_pred             hHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcC-CCHHHHHHHHhhhhhhc-ccchhhH
Confidence            568888888886 47777776666666666554332222    24445554555 67889999999999987 4444444


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                      +     ++.+.+++.++++.+++.|+.++..+...        +++   .+... .++.+..++.+.++.++..|+.++.
T Consensus       115 l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~--------~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~  177 (526)
T PF01602_consen  115 L-----IPDVIKLLSDPSPYVRKKAALALLKIYRK--------DPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLS  177 (526)
T ss_dssp             H-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHhcCCchHHHHHHHHHHHHHhcc--------CHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHH
Confidence            3     67889999999999999999999998841        122   22223 6899999999999999999999999


Q ss_pred             HhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       189 ~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .+-.+++.-..+ -...++.|.+++...+ +-.+..+.+.+..
T Consensus       178 ~i~~~~~~~~~~-~~~~~~~L~~~l~~~~-~~~q~~il~~l~~  218 (526)
T PF01602_consen  178 EIKCNDDSYKSL-IPKLIRILCQLLSDPD-PWLQIKILRLLRR  218 (526)
T ss_dssp             HHHCTHHHHTTH-HHHHHHHHHHHHTCCS-HHHHHHHHHHHTT
T ss_pred             HHccCcchhhhh-HHHHHHHhhhcccccc-hHHHHHHHHHHHh
Confidence            992122211100 1112333444444334 3345666666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.79  E-value=0.0014  Score=50.01  Aligned_cols=121  Identities=12%  Similarity=0.143  Sum_probs=97.7

Q ss_pred             HHHHHHhCCHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHH
Q 025930           22 QEKIVEAGGLTSLLMLLGSSED-----ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGA   95 (246)
Q Consensus        22 ~~~i~~~g~i~~Li~ll~~~~~-----~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~a   95 (246)
                      ...++..||++.|++...++..     ......+..++..|..+....+...+...|..+...+.... |..+.+.++..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            3678899999999999999863     34566688888888888766777777777888877776543 78899899999


Q ss_pred             HHHhhCCchh-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930           96 IANLCGNDKL-QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK  142 (246)
Q Consensus        96 L~~L~~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  142 (246)
                      |-++..++.. ...+.+.=.++.|+..|...+++++.++...+-.|-.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            9999965555 5556666689999999999999999999998887764

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.0025  Score=55.87  Aligned_cols=183  Identities=15%  Similarity=0.123  Sum_probs=133.3

Q ss_pred             ccHHHHHHhCCHHHHHHHhcCCCCHHHHHH------HHHHHHHhc-CCcchHHHHHhcCcHHHHHHHHh-cCCChHHHHH
Q 025930           20 SNQEKIVEAGGLTSLLMLLGSSEDETIHRV------AAGAIANLA-MNETNQELIMTQGGIGLLSTTAA-NAEDPQTLRM   91 (246)
Q Consensus        20 ~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~------a~~~L~~la-~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~   91 (246)
                      ...+.+++.++++-|++-+..- |+.+.+.      +..++-|+. .++.....+++.|.+.+|+.-+. ...-..-..+
T Consensus       167 vLidaLvdg~vlaLLvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Y  245 (536)
T KOG2734|consen  167 VLIDALVDGQVLALLVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQY  245 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHH
Confidence            4567888899999999888774 4444443      555666774 44778889999999999887443 3222223447


Q ss_pred             HHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc---CC------CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930           92 VAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR---CG------HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID  161 (246)
Q Consensus        92 a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~---~~------~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~  161 (246)
                      |...|.-+- .+.+++..+...++++.++.-+.   ..      ..+..++-...||.+-.         .+++|+.+.+
T Consensus       246 asEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm---------~~~nr~~Fl~  316 (536)
T KOG2734|consen  246 ASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM---------APANRERFLK  316 (536)
T ss_pred             HHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc---------Chhhhhhhhc
Confidence            888887776 55668888999999999998774   11      34567777777777663         4699999998


Q ss_pred             CCChHHHHHcccCCChhHHHHHHHHHHHhccCch---hHHHHHhCCcHHHHHHHH
Q 025930          162 DGALPWIVQNSNNEASPIRRHIELALCHLAQHEV---NAKDMISGGALWELVRIS  213 (246)
Q Consensus       162 ~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~---~~~~i~~~g~i~~L~~ll  213 (246)
                      ..+++.+.-+++. ....+..++++|-...++++   ++..+++.+|...+..+.
T Consensus       317 ~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  317 GEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             cccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence            8888877777764 66788889999999987554   677888888877765544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.72  E-value=0.0021  Score=56.37  Aligned_cols=191  Identities=12%  Similarity=0.038  Sum_probs=140.5

Q ss_pred             hHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcC-CChHHHH
Q 025930           12 KSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANA-EDPQTLR   90 (246)
Q Consensus        12 ~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~   90 (246)
                      +.-+..+++-|..+.-.-..+.+..++-+. +..++-.+.++++.+..+++.-..+.+.+.--.++.-+... .+..=++
T Consensus         8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~   86 (371)
T PF14664_consen    8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSD-SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE   86 (371)
T ss_pred             HHHHHhCchhhhhhhHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence            334445666666666666666766555454 47788889999999999988888888877444444444432 2333467


Q ss_pred             HHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHH
Q 025930           91 MVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQ  170 (246)
Q Consensus        91 ~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~  170 (246)
                      +|...++.+..-....+. +..|++..++.+..+++...+..|..+++.++.           ..-+.+...|++..|.+
T Consensus        87 QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l-----------~~P~lv~~~gG~~~L~~  154 (371)
T PF14664_consen   87 QALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELAL-----------LNPELVAECGGIRVLLR  154 (371)
T ss_pred             HHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh-----------hCHHHHHHcCCHHHHHH
Confidence            899999888744333222 356788999999998888999999999999995           33456668999999999


Q ss_pred             cccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930          171 NSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       171 ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~  215 (246)
                      .+.++..++.+..+.++..+-.+|..|+-+...-.+..++.-..+
T Consensus       155 ~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd  199 (371)
T PF14664_consen  155 ALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTD  199 (371)
T ss_pred             HHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhh
Confidence            998776678888999999999999999888876666666665543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0027  Score=61.21  Aligned_cols=133  Identities=17%  Similarity=0.157  Sum_probs=105.1

Q ss_pred             hhHHhHhh-ccccccHH----HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc
Q 025930            8 TISVKSED-IRAQSNQE----KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus         8 ~~~~~~~~-~~~~~~~~----~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~   82 (246)
                      ++..+.|+ ..+++...    ...--|-.+-++..++...++.++..|..++..++.+.+.-..+++.|.+..|+.++.+
T Consensus      1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS 1824 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS 1824 (2235)
T ss_pred             HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc
Confidence            45566666 33442222    12224778888888888778889999999999999998899999999999999999998


Q ss_pred             CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhc
Q 025930           83 AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAK  142 (246)
Q Consensus        83 ~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~  142 (246)
                        -|..++.++..|..|+++++......+.|++.-+.+++- +.+++.+.+++..+.-|..
T Consensus      1825 --~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1825 --QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             --ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence              377888999999999999999999889998888887775 4567777788877777664

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.67  E-value=0.00025  Score=50.12  Aligned_cols=66  Identities=23%  Similarity=0.286  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc--CCChhHHHHHHHHHHHhcc-CchhHHHHHh
Q 025930          129 VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN--NEASPIRRHIELALCHLAQ-HEVNAKDMIS  202 (246)
Q Consensus       129 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~--~~~~~v~~~a~~aL~~La~-~~~~~~~i~~  202 (246)
                      .+...+++++|||.        .++..++.+.+.|++|.+++.+.  +++|-+++.|..|+.+|+. ++++.+.+.+
T Consensus         2 ~K~~lvrlianl~~--------~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCY--------KNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHh--------CCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            35677899999994        67899999999999999999774  4489999999999999998 7778766654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.67  E-value=0.00018  Score=58.71  Aligned_cols=184  Identities=9%  Similarity=0.029  Sum_probs=107.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCc---chHHHHHh-c-CcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC--chhHHHHHhc
Q 025930           40 SSEDETIHRVAAGAIANLAMNE---TNQELIMT-Q-GGIGLLSTTAANAEDPQTLRMVAGAIANLCGN--DKLQLKLRGE  112 (246)
Q Consensus        40 ~~~~~~~~~~a~~~L~~la~~~---~~~~~i~~-~-g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~~~l~~~  112 (246)
                      +..+...+..|...|..+..+.   .....+.+ . ..+..+...+.+ ....+...|+.++..++..  ......  -.
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~   93 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPY--AD   93 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHH--HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHH--HH
Confidence            3357877888888888885443   33344432 1 233455555554 3456778899999998822  222222  22


Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC-hHHHHHcccCCChhHHHHHHHHHHHhc
Q 025930          113 GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA-LPWIVQNSNNEASPIRRHIELALCHLA  191 (246)
Q Consensus       113 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~-i~~Lv~ll~~~~~~v~~~a~~aL~~La  191 (246)
                      ..+|.|++.+.++...++..|..+|..++.+-        + .-     ... ++.+...+.+.++.+|..++.++..+.
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~--------~-~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l  159 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESC--------S-YS-----PKILLEILSQGLKSKNPQVREECAEWLAIIL  159 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----------H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHC--------C-cH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            36899999999988899999999999998421        1 00     123 667777888889999999999999886


Q ss_pred             cCch-hHHHHHh----CCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHHHHH
Q 025930          192 QHEV-NAKDMIS----GGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRR  241 (246)
Q Consensus       192 ~~~~-~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~~~  241 (246)
                      ..-. ....+..    ...++.+...+. +.+.++|..|.+++...-+.-+|-++
T Consensus       160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  160 EKWGSDSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             TT-----GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             HHccchHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            5222 1112211    235566666666 66778999999999877666665543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0064  Score=51.70  Aligned_cols=199  Identities=18%  Similarity=0.146  Sum_probs=124.5

Q ss_pred             HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHH--HHHHhcCCChHHHHHHHHHHHHh
Q 025930           22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLL--STTAANAEDPQTLRMVAGAIANL   99 (246)
Q Consensus        22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L--~~ll~~~~~~~~~~~a~~aL~~L   99 (246)
                      ...++.+|+++.++..+... |..+-+.|...+-.++.-+..-+.+.+.+....+  .++.-.. +.-.+-..+..+..+
T Consensus       121 illvvNaeilklildcIgge-ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIiei  198 (524)
T KOG4413|consen  121 ILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEI  198 (524)
T ss_pred             HHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHH
Confidence            44667899999999999886 6677888999999999998888888877666543  3333332 233444566666666


Q ss_pred             h-CCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH-----------
Q 025930          100 C-GNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP-----------  166 (246)
Q Consensus       100 ~-~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~-----------  166 (246)
                      + -+++.....-..|.+..|..=|+- +|.-+..+++.....|+..+         ++++-+.+.|.|.           
T Consensus       199 fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete---------HgreflaQeglIdlicnIIsGads  269 (524)
T KOG4413|consen  199 FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE---------HGREFLAQEGLIDLICNIISGADS  269 (524)
T ss_pred             HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh---------hhhhhcchhhHHHHHHHHhhCCCC
Confidence            5 567777777778888777776653 33334444444444444221         1111111111111           


Q ss_pred             --------------------------------------HHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCc--H
Q 025930          167 --------------------------------------WIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGA--L  206 (246)
Q Consensus       167 --------------------------------------~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~--i  206 (246)
                                                            --.......|++..+.|..+++.|.++.++.+.+..-|.  .
T Consensus       270 dPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaa  349 (524)
T KOG4413|consen  270 DPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAA  349 (524)
T ss_pred             CcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHH
Confidence                                                  112234446888999999999999998888776666554  3


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          207 WELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       207 ~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      ..++.-..+.+......++..+|+.
T Consensus       350 ehllarafdqnahakqeaaihaLaa  374 (524)
T KOG4413|consen  350 EHLLARAFDQNAHAKQEAAIHALAA  374 (524)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHH
Confidence            3444444444444456677777764

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.0027  Score=53.31  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=110.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHH-hcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930           32 TSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIM-TQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR  110 (246)
Q Consensus        32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~  110 (246)
                      -.++.++.+. +|.++..|+..+.+++.. ..+.... +.-.++.+.+++... ++  .+.|+.||-|++.+++.++.++
T Consensus         6 ~elv~ll~~~-sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    6 VELVELLHSL-SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHhccC-ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            4578888886 788999999999999766 2333222 233466788888863 33  5589999999999999999998


Q ss_pred             hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh------CCChHHHHHcccCC-Ch-hHHHH
Q 025930          111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID------DGALPWIVQNSNNE-AS-PIRRH  182 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~------~g~i~~Lv~ll~~~-~~-~v~~~  182 (246)
                      +. .++.++.++-.+...+....+.+|.||+..        ++.....+.+      .|.....+..+..+ +. .--.+
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~--------~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y  151 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRD--------DDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY  151 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccC--------chHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence            77 788888888888788899999999999953        2333333332      33344444444443 21 12244


Q ss_pred             HHHHHHHhccCchhHHHHHhCC
Q 025930          183 IELALCHLAQHEVNAKDMISGG  204 (246)
Q Consensus       183 a~~aL~~La~~~~~~~~i~~~g  204 (246)
                      -+..+.||+..+.+|+-+.+..
T Consensus       152 lA~vf~nls~~~~gR~l~~~~k  173 (353)
T KOG2973|consen  152 LAPVFANLSQFEAGRKLLLEPK  173 (353)
T ss_pred             HHHHHHHHhhhhhhhhHhcchh
Confidence            5678889998888888777654

>TIGR02270 conserved hypothetical protein

Probab=97.57  E-value=0.0038  Score=55.45  Aligned_cols=151  Identities=16%  Similarity=0.059  Sum_probs=101.5

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      ..+++.|+..|...+++.+...++.++  ...++..        ++..++..+.+ .++.++..++.+|..+        
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al--~~~~~~~--------~~~~L~~~L~d-~~~~vr~aaa~ALg~i--------  113 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALAL--LAQEDAL--------DLRSVLAVLQA-GPEGLCAGIQAALGWL--------  113 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHH--hccCChH--------HHHHHHHHhcC-CCHHHHHHHHHHHhcC--------
Confidence            345888999996655666544433333  3333211        37888888887 5677888888888753        


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                        -..+..+.|..+++++++.++..++.++....                    ....+.+..++++.++.++..|+.+|
T Consensus       114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------------------~~~~~~L~~~L~d~d~~Vra~A~raL  171 (410)
T TIGR02270       114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------------------HDPGPALEAALTHEDALVRAAALRAL  171 (410)
T ss_pred             --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------------------cChHHHHHHHhcCCCHHHHHHHHHHH
Confidence              12245788999999999998888876666533                    23467888999999999999999999


Q ss_pred             HHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          188 CHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       188 ~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      +.+...          ..++.|...+. +.++.+|..|...+.
T Consensus       172 G~l~~~----------~a~~~L~~al~-d~~~~VR~aA~~al~  203 (410)
T TIGR02270       172 GELPRR----------LSESTLRLYLR-DSDPEVRFAALEAGL  203 (410)
T ss_pred             Hhhccc----------cchHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            987542          13344554444 444555555555553

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=97.55  E-value=0.018  Score=55.08  Aligned_cols=220  Identities=16%  Similarity=0.162  Sum_probs=133.4

Q ss_pred             HHHHhCCHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh---cCCC----hHHHHHH
Q 025930           24 KIVEAGGLTSLLMLLGSSED----ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA---NAED----PQTLRMV   92 (246)
Q Consensus        24 ~i~~~g~i~~Li~ll~~~~~----~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~---~~~~----~~~~~~a   92 (246)
                      .+.++||+..|+.++.+-.+    ..........|..++.-..||+.+.+.|+++.|+..+.   ..+.    ..+.+..
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            45679999999999988432    33445567778888888999999999999999987764   2122    3455555


Q ss_pred             HHHHHHhhCCch-----hHHHHHhcC--------CHHHHHHHhcCC----CHHHHHHHHHHHHHhhcccccccc------
Q 025930           93 AGAIANLCGNDK-----LQLKLRGEG--------GIKALLGMVRCG----HPDVLAQVARGIANFAKCESRAST------  149 (246)
Q Consensus        93 ~~aL~~L~~~~~-----~~~~l~~~g--------~i~~L~~ll~~~----~~~~~~~a~~~L~nL~~~~~~~~~------  149 (246)
                      +.++-.+.....     .........        .+..+++.+.++    ++.+....+++|-+|+.....+..      
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F  271 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF  271 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence            555544431110     000001111        245555555432    455666666666666642111000      


Q ss_pred             -------------------------------cC---ChhhhHHHHhCCChHHHHHcccCCC--------hhH--------
Q 025930          150 -------------------------------QG---TKTGRSLLIDDGALPWIVQNSNNEA--------SPI--------  179 (246)
Q Consensus       150 -------------------------------~~---~~~~~~~l~~~g~i~~Lv~ll~~~~--------~~v--------  179 (246)
                                                     +.   ....|+.+++.|++...++.+...-        ++-        
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence                                           11   1577899999999998888775542        222        


Q ss_pred             HHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHH---HHHHHHHHHccChhHHHHHHHhh
Q 025930          180 RRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSRED---IRTLAHRTLTSSPAFQAEMRRLR  243 (246)
Q Consensus       180 ~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~---~~~~A~~~L~~~~~~~~e~~~~~  243 (246)
                      -..++..|.-||..+...+.++..+.++.+-++-+-++.+.   +.+...++|...+.....++.+|
T Consensus       352 Lp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~~lR  418 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQNLR  418 (802)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHHHHH
Confidence            24577888888886665566677778865555555443333   33444566677777666666654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.52  E-value=0.0022  Score=57.76  Aligned_cols=175  Identities=16%  Similarity=0.104  Sum_probs=120.3

Q ss_pred             HHHHHHhcCCcchHHHHHhcCcHHHHHHHH---------hcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHH
Q 025930           51 AGAIANLAMNETNQELIMTQGGIGLLSTTA---------ANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLG  120 (246)
Q Consensus        51 ~~~L~~la~~~~~~~~i~~~g~i~~L~~ll---------~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~  120 (246)
                      ..+|.-++.++.+...+....++..|....         ....+..+...|+.+|+|+. .++..++.+++.|..+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            456777788877888888777888777766         44457888889999999998 77888999999999999999


Q ss_pred             HhcCC-----CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC-CChHHHHHcccC-----------------CCh
Q 025930          121 MVRCG-----HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD-GALPWIVQNSNN-----------------EAS  177 (246)
Q Consensus       121 ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-g~i~~Lv~ll~~-----------------~~~  177 (246)
                      .++..     +.++.-...++|.-++.        ..++.+..+.+. +++..++..+..                 .+.
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa--------~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~  153 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTA--------LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDE  153 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhc--------CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchH
Confidence            99865     67888888888887774        446777776654 677766654421                 133


Q ss_pred             hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc--------CCHHHHHHHHHHHHccCh
Q 025930          178 PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD--------CSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       178 ~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~--------~~~~~~~~~A~~~L~~~~  233 (246)
                      ..-..+++.+.|+..+......-...+.++.|+.++..        .........+.-+|.+.|
T Consensus       154 ~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp  217 (446)
T PF10165_consen  154 EALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP  217 (446)
T ss_pred             HHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence            45666789999997633322221234455555555432        233444566666676654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.03  Score=49.31  Aligned_cols=205  Identities=16%  Similarity=0.182  Sum_probs=142.5

Q ss_pred             HhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc------chH----HHHHhcCcHHHHHHHHhc
Q 025930           13 SEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNE------TNQ----ELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus        13 ~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~------~~~----~~i~~~g~i~~L~~ll~~   82 (246)
                      .-+|.-++.--.+++-++++.|+++|.+. +-++....+..|-.|+..+      +..    ..+++.+.++.|++-+..
T Consensus       109 hvlAt~PdLYp~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR  187 (536)
T KOG2734|consen  109 HVLATMPDLYPILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER  187 (536)
T ss_pred             HhhhcChHHHHHHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH
Confidence            34566677777899999999999999996 6666676777777877542      222    456677888888887764


Q ss_pred             CCChHH------HHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhhcccccccccCCh
Q 025930           83 AEDPQT------LRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRC--GHPDVLAQVARGIANFAKCESRASTQGTK  153 (246)
Q Consensus        83 ~~~~~~------~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~~  153 (246)
                       -|+.+      .-++...+-|+. -.++....+++.|.+.-|++-+..  .-...+..|.-++.-+-        +.++
T Consensus       188 -LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaill--------q~s~  258 (536)
T KOG2734|consen  188 -LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILL--------QNSD  258 (536)
T ss_pred             -hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHh--------ccCc
Confidence             22322      335566677776 567888888888988888875542  33445677777777665        2456


Q ss_pred             hhhHHHHhCCChHHHHHcc---cCCC------hhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHH
Q 025930          154 TGRSLLIDDGALPWIVQNS---NNEA------SPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTL  224 (246)
Q Consensus       154 ~~~~~l~~~g~i~~Lv~ll---~~~~------~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~  224 (246)
                      +++..+.+-.++..+++-+   +..+      .+.-++--.+||.+-+.+.+|+.+....+++...-+++.  .+.-+..
T Consensus       259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~S  336 (536)
T KOG2734|consen  259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGS  336 (536)
T ss_pred             hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhh
Confidence            7888888888888887755   2222      234455567777777899999999998888877666663  3444455


Q ss_pred             HHHHH
Q 025930          225 AHRTL  229 (246)
Q Consensus       225 A~~~L  229 (246)
                      |.+.|
T Consensus       337 alkvL  341 (536)
T KOG2734|consen  337 ALKVL  341 (536)
T ss_pred             HHHHH
Confidence            55555

>PTZ00429 beta-adaptin; Provisional

Probab=97.46  E-value=0.018  Score=54.95  Aligned_cols=92  Identities=12%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      +|+.++..|++.|+++-. ++....     .++.+.+.+.+.++-+++.|+.++..+-.        .++   +.+.+.|
T Consensus       117 ~Np~IRaLALRtLs~Ir~-~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~--------~~p---elv~~~~  179 (746)
T PTZ00429        117 SSPVVRALAVRTMMCIRV-SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFH--------DDM---QLFYQQD  179 (746)
T ss_pred             CCHHHHHHHHHHHHcCCc-HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHh--------hCc---ccccccc
Confidence            356666555555554422 222222     24567777788899999999999998763        122   2334567


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      .++.|..++.+.++.|..+|+.+|..+..
T Consensus       180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        180 FKKDLVELLNDNNPVVASNAAAIVCEVND  208 (746)
T ss_pred             hHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            88999999999999999999999999975

>PTZ00429 beta-adaptin; Provisional

Probab=97.44  E-value=0.006  Score=58.11  Aligned_cols=179  Identities=11%  Similarity=0.074  Sum_probs=112.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR  110 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~  110 (246)
                      ++++.+.+.+. +|.+++.|+.++.++-..+.  +.+.+.|.++.|..++.+ .|+.+..+|+.+|..+....... .-.
T Consensus       142 ~~~lkk~L~D~-~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~-l~l  216 (746)
T PTZ00429        142 LEPLRRAVADP-DPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEK-IES  216 (746)
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchh-hHH
Confidence            45556666664 78888888888888854422  234455667778887776 67888888888888887332111 111


Q ss_pred             hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930          111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                      ..+.+..++..+..-++..+...+.+|....        |.++...     ...+..+...+++.++.|...|++++.++
T Consensus       217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--------P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        217 SNEWVNRLVYHLPECNEWGQLYILELLAAQR--------PSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--------CCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            2334555666666666777777777775433        1211111     24577777888888999999999999999


Q ss_pred             ccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          191 AQH--EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       191 a~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      ...  ++..+... ......|+.+..  ++.+++..+.+.+.
T Consensus       284 ~~~~~~~~~~~~~-~rl~~pLv~L~s--s~~eiqyvaLr~I~  322 (746)
T PTZ00429        284 ASRCSQELIERCT-VRVNTALLTLSR--RDAETQYIVCKNIH  322 (746)
T ss_pred             cCcCCHHHHHHHH-HHHHHHHHHhhC--CCccHHHHHHHHHH
Confidence            764  22211111 123356666643  44567777776664

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.39  E-value=0.014  Score=50.41  Aligned_cols=152  Identities=24%  Similarity=0.270  Sum_probs=91.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR  110 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~  110 (246)
                      ++.+...+.+. ++.++..|+.+|+.+-...          .++.++..+....+..++..+.++|..+-.-.       
T Consensus        76 v~~l~~~l~d~-~~~vr~~a~~aLg~~~~~~----------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------  137 (335)
T COG1413          76 VPLLRELLSDE-DPRVRDAAADALGELGDPE----------AVPPLVELLENDENEGVRAAAARALGKLGDER-------  137 (335)
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHccCChh----------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------
Confidence            55555666554 4555555555555554443          46677777775456778888888887763221       


Q ss_pred             hcCCHHHHHHHhcCCCH------------HHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChh
Q 025930          111 GEGGIKALLGMVRCGHP------------DVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASP  178 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~------------~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~  178 (246)
                         .+.+++..+..+..            .++..++..+..+-                   ....++.+...+...+..
T Consensus       138 ---a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-------------------~~~~~~~l~~~l~~~~~~  195 (335)
T COG1413         138 ---ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-------------------DPEAIPLLIELLEDEDAD  195 (335)
T ss_pred             ---hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-------------------ChhhhHHHHHHHhCchHH
Confidence               26667777765442            23444444444443                   235688899999988899


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          179 IRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       179 v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +|..+..+|..+....        ....+.+...+. .....++..+..+|..
T Consensus       196 vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~-~~~~~vr~~~~~~l~~  239 (335)
T COG1413         196 VRRAAASALGQLGSEN--------VEAADLLVKALS-DESLEVRKAALLALGE  239 (335)
T ss_pred             HHHHHHHHHHHhhcch--------hhHHHHHHHHhc-CCCHHHHHHHHHHhcc
Confidence            9999999999887754        123334444443 3334445555555543

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.37  E-value=0.0095  Score=45.58  Aligned_cols=131  Identities=11%  Similarity=0.141  Sum_probs=93.1

Q ss_pred             HHHHHhcCcHHHHHHHHhcCCC-----hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHH
Q 025930           64 QELIMTQGGIGLLSTTAANAED-----PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC--GHPDVLAQVARG  136 (246)
Q Consensus        64 ~~~i~~~g~i~~L~~ll~~~~~-----~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~--~~~~~~~~a~~~  136 (246)
                      ...++..||+..|+.++.++..     .+....++.+...|-......=...+...|..++.....  .+..+.+.|...
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            4567888999999999998653     356667788887776433211123333445566666653  268899999999


Q ss_pred             HHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHHHHHh
Q 025930          137 IANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAKDMIS  202 (246)
Q Consensus       137 L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~  202 (246)
                      |-+++.        .++...+.+.++=-++.|+..++..+++++.++...+-.|-.  +++.|+.+.+
T Consensus        84 LEs~Vl--------~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~  143 (160)
T PF11841_consen   84 LESIVL--------NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE  143 (160)
T ss_pred             HHHHHh--------CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            999985        345656666666669999999999999999999988888843  4455555543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.37  E-value=0.0069  Score=58.32  Aligned_cols=157  Identities=15%  Similarity=0.084  Sum_probs=121.9

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCcchHHHHHhcCcHHHHHHHHhcC--CChHHHHHHHHHHHHhh-CC
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANL-AMNETNQELIMTQGGIGLLSTTAANA--EDPQTLRMVAGAIANLC-GN  102 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~a~~aL~~L~-~~  102 (246)
                      .-|+.|-++++|+++ -.+++-.-+.+-+.+ +.|+..+..+++.+|-..++..+...  -+++-+..|+..|.-++ +.
T Consensus       510 sVGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf  588 (1387)
T KOG1517|consen  510 SVGIFPYVLKLLQSS-ARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF  588 (1387)
T ss_pred             ccchHHHHHHHhccc-hHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence            458999999999997 455555444444454 88899999999999988888777652  24577778999999998 55


Q ss_pred             chhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930          103 DKLQLKLRGEGGIKALLGMVRCG-HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR  181 (246)
Q Consensus       103 ~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~  181 (246)
                      +-.++...+.+.+..++..|.++ .+-+++=++-.|..|=.        +.++.|=.=...++.+.|..++.++-++||.
T Consensus       589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~--------d~~~Arw~G~r~~AhekL~~~LsD~vpEVRa  660 (1387)
T KOG1517|consen  589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE--------DYDEARWSGRRDNAHEKLILLLSDPVPEVRA  660 (1387)
T ss_pred             chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--------hcchhhhccccccHHHHHHHHhcCccHHHHH
Confidence            77788888999999999999875 46667777777776652        3345554445678899999999999999999


Q ss_pred             HHHHHHHHhcc
Q 025930          182 HIELALCHLAQ  192 (246)
Q Consensus       182 ~a~~aL~~La~  192 (246)
                      .|+.||..+-.
T Consensus       661 AAVFALgtfl~  671 (1387)
T KOG1517|consen  661 AAVFALGTFLS  671 (1387)
T ss_pred             HHHHHHHHHhc
Confidence            99999999854

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.34  E-value=0.0027  Score=51.71  Aligned_cols=153  Identities=12%  Similarity=0.066  Sum_probs=91.6

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH-HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      ..+..++..+.+. ...+...|+.++..++..-... ... -...+|.|+..+.+ ....+++.|..+|..++.+-....
T Consensus        53 ~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~  129 (228)
T PF12348_consen   53 QLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSP  129 (228)
T ss_dssp             ---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--
T ss_pred             HhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHH
Confidence            4455666666553 4557788999999998663222 222 12357777777777 457788899999999986544222


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                      .+    ..+.+.....++++.++..++..+..+...-+    ...+.......-...++.+...+.+.++++|..|-.++
T Consensus       130 ~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~----~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~  201 (228)
T PF12348_consen  130 KI----LLEILSQGLKSKNPQVREECAEWLAIILEKWG----SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECL  201 (228)
T ss_dssp             HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc----chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            22    14566667788999999999999988764210    00011111111134678889999999999999999999


Q ss_pred             HHhcc
Q 025930          188 CHLAQ  192 (246)
Q Consensus       188 ~~La~  192 (246)
                      +.+..
T Consensus       202 ~~l~~  206 (228)
T PF12348_consen  202 WALYS  206 (228)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99965

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.003  Score=58.08  Aligned_cols=172  Identities=15%  Similarity=0.148  Sum_probs=120.8

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH--HHHHhc---CcHHHHHHHHhcCCChHHHHHHHHHHHHhh--C
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ--ELIMTQ---GGIGLLSTTAANAEDPQTLRMVAGAIANLC--G  101 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~--~~i~~~---g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~  101 (246)
                      .++|.|.++|.++ |....+.|..+|..++.|....  ..+...   -.+|.++...++ .++.++..|.+++..+.  .
T Consensus       128 elLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecC
Confidence            3589999999986 6667888999999999883221  111110   137788888888 57999999998887765  2


Q ss_pred             CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhh-HHHH--hCCChHHHHHcccCCChh
Q 025930          102 NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGR-SLLI--DDGALPWIVQNSNNEASP  178 (246)
Q Consensus       102 ~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~-~~l~--~~g~i~~Lv~ll~~~~~~  178 (246)
                      ....-.++-.  .+..+..+...+++++++++++++.-|-.            .| +.+.  -.++++.+++.-+..+..
T Consensus       206 ~qal~~~iD~--Fle~lFalanD~~~eVRk~vC~alv~Lle------------vr~dkl~phl~~IveyML~~tqd~dE~  271 (885)
T KOG2023|consen  206 TQALYVHIDK--FLEILFALANDEDPEVRKNVCRALVFLLE------------VRPDKLVPHLDNIVEYMLQRTQDVDEN  271 (885)
T ss_pred             cHHHHHHHHH--HHHHHHHHccCCCHHHHHHHHHHHHHHHH------------hcHHhcccchHHHHHHHHHHccCcchh
Confidence            2222222222  36667777778899999999999998872            11 1121  135788888888989999


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHh--CCcHHHHHHHHhcC
Q 025930          179 IRRHIELALCHLAQHEVNAKDMIS--GGALWELVRISRDC  216 (246)
Q Consensus       179 v~~~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll~~~  216 (246)
                      |-..||.....+|..+-.+..+..  ...+|.|++=+..+
T Consensus       272 VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ys  311 (885)
T KOG2023|consen  272 VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYS  311 (885)
T ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccc
Confidence            999999999999998855555543  46677776665543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.29  E-value=0.00067  Score=42.30  Aligned_cols=55  Identities=22%  Similarity=0.118  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 025930           44 ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL   99 (246)
Q Consensus        44 ~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L   99 (246)
                      |.++..|+.+|++++........-.....++.|+.++.+ +++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence            457889999999998774333333445689999999987 5679999999999875

...

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.22  E-value=0.00075  Score=42.05  Aligned_cols=55  Identities=22%  Similarity=0.181  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 025930           86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANF  140 (246)
Q Consensus        86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL  140 (246)
                      +.++..|+++|.+++........-....+++.|+.+|.+++++++..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            3578899999999885544443335556899999999999999999999999875

...

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.19  E-value=0.0095  Score=53.67  Aligned_cols=173  Identities=16%  Similarity=0.118  Sum_probs=121.5

Q ss_pred             hHHhHhhccccccHHHHHHhCCHHHHHHHh---------cCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHH
Q 025930            9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLL---------GSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLST   78 (246)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll---------~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~   78 (246)
                      +..++-++.++.+-+.+....++..|+.+-         ....++.+...|.++|+|+... +..|..+++.|+.+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            455677778888889999999999999887         4455778889999999999766 789999999999999999


Q ss_pred             HHhcC----CChHHHHHHHHHHHHhh-CCchhHHHHH-hcCCHHHHHHHhcC-----------------CCHHHHHHHHH
Q 025930           79 TAANA----EDPQTLRMVAGAIANLC-GNDKLQLKLR-GEGGIKALLGMVRC-----------------GHPDVLAQVAR  135 (246)
Q Consensus        79 ll~~~----~~~~~~~~a~~aL~~L~-~~~~~~~~l~-~~g~i~~L~~ll~~-----------------~~~~~~~~a~~  135 (246)
                      .++..    .+.++.-...+.|+-++ ...+.+..++ +.+++..+...+..                 .+.+....++.
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK  161 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK  161 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence            99875    14667767888888777 5666776766 45788877776621                 13445677889


Q ss_pred             HHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-------C--CChhHHHHHHHHHHHh
Q 025930          136 GIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-------N--EASPIRRHIELALCHL  190 (246)
Q Consensus       136 ~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-------~--~~~~v~~~a~~aL~~L  190 (246)
                      ++.|+...-        +.... =.....++.++.++.       .  +......++..+|.++
T Consensus       162 llFNit~~~--------~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl  216 (446)
T PF10165_consen  162 LLFNITLHY--------PKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL  216 (446)
T ss_pred             HHHHhhhcc--------Ccccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence            999987631        11100 011233444444322       1  1345677788888887

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0022  Score=57.56  Aligned_cols=135  Identities=10%  Similarity=0.022  Sum_probs=107.8

Q ss_pred             HHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCH
Q 025930           50 AAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHP  127 (246)
Q Consensus        50 a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~  127 (246)
                      ++..|-+++.. .-.|..+.+...+++|++++++ ++-.+..-+..+++|+. -.+..+..+.+.|.+..++.++.++|.
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            34444455554 5577788888889999999998 44555556788888887 566778889999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          128 DVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       128 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      .++.+..+.++.+...       ...+-+-.+...-++..++.+..++.-.++..+...|.|+..
T Consensus       488 aLqans~wvlrHlmyn-------cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc  545 (743)
T COG5369         488 ALQANSEWVLRHLMYN-------CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC  545 (743)
T ss_pred             hhhhcchhhhhhhhhc-------CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence            9999999999998853       223444556666779999999999999999999999999966

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.12  E-value=0.019  Score=48.70  Aligned_cols=183  Identities=11%  Similarity=0.041  Sum_probs=123.8

Q ss_pred             hhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCC
Q 025930            8 TISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSE-DETIHRVAAGAIANLAMNETNQELIMT-QGGIGLLSTTAANAE   84 (246)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~-~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~   84 (246)
                      .++.+.++++..++|..+-.+ -+-..++..++..- +-.+|-+..-+++-++.+++..+.+-+ ..-+.-++++.++..
T Consensus       169 av~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~  248 (432)
T COG5231         169 AVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERA  248 (432)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347888999999999877644 45677888887742 356788899999999999877755543 345667788888755


Q ss_pred             ChHHHHHHHHHHHHhhC-Cc-hhHHHHHhcCCHHHHHHHhcC---CCHHHHHHHH-------------HHHHH-------
Q 025930           85 DPQTLRMVAGAIANLCG-ND-KLQLKLRGEGGIKALLGMVRC---GHPDVLAQVA-------------RGIAN-------  139 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~~-~~-~~~~~l~~~g~i~~L~~ll~~---~~~~~~~~a~-------------~~L~n-------  139 (246)
                      -+.+.+-+++++.|++. .+ .....+.-.|-+.+.+..|..   .|+++....-             ..+-+       
T Consensus       249 keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELds  328 (432)
T COG5231         249 KEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDS  328 (432)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            57788899999999985 32 233334444545556666642   2444432111             11100       


Q ss_pred             --hhccc-cc-ccc-------------------------------------------cCChhhhHHHHhCCChHHHHHcc
Q 025930          140 --FAKCE-SR-AST-------------------------------------------QGTKTGRSLLIDDGALPWIVQNS  172 (246)
Q Consensus       140 --L~~~~-~~-~~~-------------------------------------------~~~~~~~~~l~~~g~i~~Lv~ll  172 (246)
                        |++.+ +. +..                                           +..|+.+..+.+.|+=+.+..++
T Consensus       329 g~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~  408 (432)
T COG5231         329 GRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLI  408 (432)
T ss_pred             CcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHh
Confidence              11110 00 000                                           23489999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHh
Q 025930          173 NNEASPIRRHIELALCHL  190 (246)
Q Consensus       173 ~~~~~~v~~~a~~aL~~L  190 (246)
                      .+++++++..|+.++..+
T Consensus       409 nh~d~~VkfeAl~a~q~~  426 (432)
T COG5231         409 NHDDDDVKFEALQALQTC  426 (432)
T ss_pred             cCCCchhhHHHHHHHHHH
Confidence            999999999999998765

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.08  E-value=0.0012  Score=48.01  Aligned_cols=69  Identities=25%  Similarity=0.389  Sum_probs=59.5

Q ss_pred             CHHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930          114 GIKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       114 ~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                      .++.|+++| .+.++....-|+.-+..++.        ..|.+|..+.+.|+-+.+..++.++|++|++.|+.|+..+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr--------~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVR--------HYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHH--------H-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHH--------HChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            588899999 46678888899999999985        3479999999999999999999999999999999998766

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.08  E-value=0.035  Score=48.75  Aligned_cols=161  Identities=17%  Similarity=0.070  Sum_probs=112.3

Q ss_pred             cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHH
Q 025930           61 ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCG--HPDVLAQVARGIA  138 (246)
Q Consensus        61 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~  138 (246)
                      +..+..+.-....+-+..++-+ ++.+++..+.++++.+..+++.-+.+.+.++---++..|..+  ...=+++|...++
T Consensus        15 p~l~~~~~~~~~~~~i~~~lL~-~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR   93 (371)
T PF14664_consen   15 PTLKYDLVLSFFGERIQCMLLS-DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIR   93 (371)
T ss_pred             chhhhhhhHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHH
Confidence            4444443322233444334444 248999999999999999999999999988766666666533  3445789999998


Q ss_pred             HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCC
Q 025930          139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCS  217 (246)
Q Consensus       139 nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~  217 (246)
                      .+....         .+.+. ...|++..++.+....++..+..|..+|+.++. +|   +.+.++||+..|++.+.++.
T Consensus        94 ~~l~~~---------~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~  160 (371)
T PF14664_consen   94 AFLEIK---------KGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS  160 (371)
T ss_pred             HHHHhc---------CCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc
Confidence            877421         12221 245788999999999999999999999999998 44   45788999999999998755


Q ss_pred             HHHHHHHHHHHH---ccChhHH
Q 025930          218 REDIRTLAHRTL---TSSPAFQ  236 (246)
Q Consensus       218 ~~~~~~~A~~~L---~~~~~~~  236 (246)
                      .+ ..+....++   -+.|..+
T Consensus       161 ~~-~~~~l~~~lL~lLd~p~tR  181 (371)
T PF14664_consen  161 FS-ISESLLDTLLYLLDSPRTR  181 (371)
T ss_pred             Hh-HHHHHHHHHHHHhCCcchh
Confidence            44 444444433   3556554

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=97.00  E-value=0.0091  Score=45.93  Aligned_cols=145  Identities=19%  Similarity=0.275  Sum_probs=95.6

Q ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHH-HHHHhcCCChHHHHHHHHHHHHhh-CCchhHH
Q 025930           31 LTSLLMLLGS-SEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLL-STTAANAEDPQTLRMVAGAIANLC-GNDKLQL  107 (246)
Q Consensus        31 i~~Li~ll~~-~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L-~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~  107 (246)
                      ++.++..|.. ...+.++..+.-++..+-  +..++.+.+  .+.-+ -..+.+. +.+-...+..++..+- ..++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence            4455666654 334567888888888883  434444332  23333 3344432 2234446788888777 5667766


Q ss_pred             HHH-hcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CCChh-HHHH
Q 025930          108 KLR-GEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASP-IRRH  182 (246)
Q Consensus       108 ~l~-~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~-v~~~  182 (246)
                      .+. ..|.++.++.++.  +++......++.+|..-|         .+...|..+.++ ++++|-.+.+ ++++. +|..
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc---------~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~  149 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC---------IDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVL  149 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT---------TSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH---------ccHHHHHHHHHH-HHHHHHHHHccccchHHHHHH
Confidence            665 7888999999998  778888888888888777         345666666655 6999999995 44565 7888


Q ss_pred             HHHHHHHh
Q 025930          183 IELALCHL  190 (246)
Q Consensus       183 a~~aL~~L  190 (246)
                      |+..|+.|
T Consensus       150 A~v~L~Kl  157 (157)
T PF11701_consen  150 AAVGLCKL  157 (157)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            88887653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.00  E-value=0.012  Score=53.52  Aligned_cols=181  Identities=15%  Similarity=0.091  Sum_probs=116.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR  110 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~  110 (246)
                      +|+++.-+... ....+..++..++.++.....+-.......+|.+.+.+.+ .++++++.+..+|..+++..+|.... 
T Consensus       256 lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D-T~~evr~a~~~~l~~~~svidN~dI~-  332 (569)
T KOG1242|consen  256 LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD-TKPEVRKAGIETLLKFGSVIDNPDIQ-  332 (569)
T ss_pred             hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc-CCHHHHHHHHHHHHHHHHhhccHHHH-
Confidence            44555444442 3445777889999888887777777777889999999998 68999999999999999555554421 


Q ss_pred             hcCCHHHHHHHhcCCCHHHHHHHHHHHHH--hhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          111 GEGGIKALLGMVRCGHPDVLAQVARGIAN--FAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~n--L~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                        -.+|.|++.+.++...+. .+...|..  +..+-       +....     .-.+|.+.+-+...+..+++.++..++
T Consensus       333 --~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V-------~~psL-----almvpiL~R~l~eRst~~kr~t~~Iid  397 (569)
T KOG1242|consen  333 --KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEV-------DAPSL-----ALMVPILKRGLAERSTSIKRKTAIIID  397 (569)
T ss_pred             --HHHHHHHHHhcCcccchH-HHHHhhcceeeeeee-------cchhH-----HHHHHHHHHHHhhccchhhhhHHHHHH
Confidence              237889999987642322 22222221  11110       00000     112445555555558889999999999


Q ss_pred             HhccCchhHHHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          189 HLAQHEVNAKDMIS--GGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       189 ~La~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      |+|.--++.+.+..  ...+|.|-+.+... -+++|..|.++|.
T Consensus       398 Nm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~  440 (569)
T KOG1242|consen  398 NMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALG  440 (569)
T ss_pred             HHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHH
Confidence            99983333333332  23555666666655 6788999999984

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.98  E-value=0.011  Score=55.28  Aligned_cols=152  Identities=16%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHH-HHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIG-LLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL  109 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~-~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l  109 (246)
                      +...++.|++. .+.++.+|+..++.++.--..+......|-+. +|.+-+.. +++++.-..++||+.+.+.....+..
T Consensus       801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccC
Confidence            45567788875 77888889999998876643443222222333 23455555 67899888999998887554333322


Q ss_pred             H-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          110 R-GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       110 ~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                      - -.|.+|.|...|++.+..++++++..+.-+|...     +.....|+.|.   .---|+.+|+.++.++|.+|...++
T Consensus       879 pPi~dllPrltPILknrheKVqen~IdLvg~Iadrg-----pE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG  950 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRG-----PEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFG  950 (1172)
T ss_pred             CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcC-----cccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            2 2467899999999999999999999999988521     12233455444   3446788999999999999998888


Q ss_pred             Hhcc
Q 025930          189 HLAQ  192 (246)
Q Consensus       189 ~La~  192 (246)
                      .++.
T Consensus       951 ~Iak  954 (1172)
T KOG0213|consen  951 YIAK  954 (1172)
T ss_pred             HHHH
Confidence            8764

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.93  E-value=0.049  Score=44.51  Aligned_cols=144  Identities=11%  Similarity=0.012  Sum_probs=101.8

Q ss_pred             HHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh----cCCChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhc
Q 025930           50 AAGAIANLAMNETNQELIMTQGGIGLLSTTAA----NAEDPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVR  123 (246)
Q Consensus        50 a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~----~~~~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~  123 (246)
                      |...|--++.+++.|..+.+...--.|-..+.    +.+++-++-.+++.+..|.  .+.+.-..+...++||.+++.+.
T Consensus        99 aL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime  178 (293)
T KOG3036|consen   99 ALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME  178 (293)
T ss_pred             HHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence            33334445899999999998665444444443    3346778889999999998  45666677889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--------CCChHHHH-HcccCCChhHHHHHHHHHHHhccCc
Q 025930          124 CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--------DGALPWIV-QNSNNEASPIRRHIELALCHLAQHE  194 (246)
Q Consensus       124 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--------~g~i~~Lv-~ll~~~~~~v~~~a~~aL~~La~~~  194 (246)
                      .+++.-+.-|..++.-+-.         ++.+-.-+.+        .-.+..++ ++.+.+++.+-+++.++..+|+.++
T Consensus       179 ~GSelSKtvA~fIlqKIll---------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  179 SGSELSKTVATFILQKILL---------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             cccHHHHHHHHHHHHHHhh---------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            9988777777777765542         2233222221        11233333 3556679999999999999999999


Q ss_pred             hhHHHHHh
Q 025930          195 VNAKDMIS  202 (246)
Q Consensus       195 ~~~~~i~~  202 (246)
                      ..|..+.+
T Consensus       250 rar~aL~~  257 (293)
T KOG3036|consen  250 RARAALRS  257 (293)
T ss_pred             HHHHHHHh
Confidence            99888775

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.89  E-value=0.14  Score=41.96  Aligned_cols=144  Identities=15%  Similarity=0.137  Sum_probs=102.6

Q ss_pred             hhhHHhHhhccccccHHHHHHhCC---HHHHHH-HhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHH
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGG---LTSLLM-LLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~---i~~Li~-ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll   80 (246)
                      +.+.++.-.+.+++.|..+.++.+   +-+++. ..++...+..+-.+.++++.|.+.  ++.-..+...+.||..+.++
T Consensus        98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim  177 (293)
T KOG3036|consen   98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM  177 (293)
T ss_pred             HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence            456667777999999999999877   444443 333444677777899999999766  44556667889999999999


Q ss_pred             hcCCChHHHHHHHHHHHHhhCCchhHHHHH----hcCCHHHHHH-----HhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930           81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLR----GEGGIKALLG-----MVRCGHPDVLAQVARGIANFAKCESRASTQG  151 (246)
Q Consensus        81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~----~~g~i~~L~~-----ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  151 (246)
                      ..+ .+..+..|..++..+-.++..-..+.    +.-.|..++.     +.+.++..+.+.+++...+|+         +
T Consensus       178 e~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs---------d  247 (293)
T KOG3036|consen  178 ESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS---------D  247 (293)
T ss_pred             hcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---------C
Confidence            985 46667788888888876665543332    2223333322     334678899999999999999         5


Q ss_pred             ChhhhHHHH
Q 025930          152 TKTGRSLLI  160 (246)
Q Consensus       152 ~~~~~~~l~  160 (246)
                      ++..|.++.
T Consensus       248 nprar~aL~  256 (293)
T KOG3036|consen  248 NPRARAALR  256 (293)
T ss_pred             CHHHHHHHH
Confidence            567776665

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.85  E-value=0.026  Score=44.82  Aligned_cols=118  Identities=16%  Similarity=0.103  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhhCCchhHHHHHhcC----------------CHHHHHHHhcC------CCHHHHHHHHHHHHHhhcccc
Q 025930           88 TLRMVAGAIANLCGNDKLQLKLRGEG----------------GIKALLGMVRC------GHPDVLAQVARGIANFAKCES  145 (246)
Q Consensus        88 ~~~~a~~aL~~L~~~~~~~~~l~~~g----------------~i~~L~~ll~~------~~~~~~~~a~~~L~nL~~~~~  145 (246)
                      ....++..|+|++..+.....+.+.+                .+..|++.+..      ...+-....+.+|.|++    
T Consensus        11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS----   86 (192)
T PF04063_consen   11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS----   86 (192)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc----
Confidence            45578889999998777777554332                45666766654      23456778999999999    


Q ss_pred             cccccCChhhhHHHHhCC--C--hHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhC---CcHHHHHHHHh
Q 025930          146 RASTQGTKTGRSLLIDDG--A--LPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISG---GALWELVRISR  214 (246)
Q Consensus       146 ~~~~~~~~~~~~~l~~~g--~--i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~---g~i~~L~~ll~  214 (246)
                           ..+++|+.+.+..  .  +..|+......+..-|.-++.+|.|+|++.+....+...   +.++.|+--+.
T Consensus        87 -----~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   87 -----QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             -----CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence                 4579999999643  3  677777777777777777899999999988887777763   56666665554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.82  E-value=0.0014  Score=47.58  Aligned_cols=69  Identities=25%  Similarity=0.294  Sum_probs=57.2

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC  100 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~  100 (246)
                      +..|+.+|..++|+.+.-.||.=|+.+... |..|..+-+.|+=..+..++.+ +|++++..|+.++..+.
T Consensus        45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence            899999997766888777899999999866 7777777788888888899998 78999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.77  E-value=0.086  Score=45.45  Aligned_cols=152  Identities=25%  Similarity=0.314  Sum_probs=109.6

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      -.++.++..+.+. ++.++..|+..++.+...+          .++.+..++.+ .++.++..+..+|..+-.       
T Consensus        43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~~~----------av~~l~~~l~d-~~~~vr~~a~~aLg~~~~-------  103 (335)
T COG1413          43 EAADELLKLLEDE-DLLVRLSAAVALGELGSEE----------AVPLLRELLSD-EDPRVRDAAADALGELGD-------  103 (335)
T ss_pred             hhHHHHHHHHcCC-CHHHHHHHHHHHhhhchHH----------HHHHHHHHhcC-CCHHHHHHHHHHHHccCC-------
Confidence            4688899999886 7888888888876665554          68888899998 578889888887776522       


Q ss_pred             HHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCCh----------
Q 025930          109 LRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS----------  177 (246)
Q Consensus       109 l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~----------  177 (246)
                         ...++.++..+. +++..++..++.+|..+-.                   ...+..++..+.+...          
T Consensus       104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------------------~~a~~~l~~~l~~~~~~~a~~~~~~~  161 (335)
T COG1413         104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD-------------------ERALDPLLEALQDEDSGSAAAALDAA  161 (335)
T ss_pred             ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------------------hhhhHHHHHHhccchhhhhhhhccch
Confidence               125788999998 5889999999999998873                   2347777777766552          


Q ss_pred             --hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          178 --PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       178 --~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                        .++..+..+|..+..          ...++.+...+.+ ....++..|..+|..+
T Consensus       162 ~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~-~~~~vr~~Aa~aL~~~  207 (335)
T COG1413         162 LLDVRAAAAEALGELGD----------PEAIPLLIELLED-EDADVRRAAASALGQL  207 (335)
T ss_pred             HHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhC-chHHHHHHHHHHHHHh
Confidence              345555555444433          3366778888874 4457888888888653

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.70  E-value=0.078  Score=45.18  Aligned_cols=169  Identities=14%  Similarity=0.145  Sum_probs=110.9

Q ss_pred             CCHHHHH-HHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh--CCchh
Q 025930           29 GGLTSLL-MLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--GNDKL  105 (246)
Q Consensus        29 g~i~~Li-~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~~~~~  105 (246)
                      +.++.|| ..+++. ++.+++.|..+|+-++.-+.   .+. ...++.+...++. +++.++..|+.++..+.  .....
T Consensus        26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchh
Confidence            6777776 667775 78999999999999986653   111 1236778887866 47899999999999987  22222


Q ss_pred             HHH-------HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC---
Q 025930          106 QLK-------LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE---  175 (246)
Q Consensus       106 ~~~-------l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~---  175 (246)
                      ...       ......++.+.+.+.+.+++++..++..++-|-.+.      ...+      ...++..|+-+..++   
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~------~i~~------~~~vL~~Lll~yF~p~t~  167 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG------RISD------PPKVLSRLLLLYFNPSTE  167 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC------CCCc------HHHHHHHHHHHHcCcccC
Confidence            111       223456778888888889999999999998876431      0011      123444444443332   


Q ss_pred             -ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930          176 -ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       176 -~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~  215 (246)
                       ++.+|..-...+-..|+.....+..+....++.+..+...
T Consensus       168 ~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  168 DNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence             4566666666666667755544666666777777776654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.09  Score=47.79  Aligned_cols=155  Identities=18%  Similarity=0.153  Sum_probs=105.1

Q ss_pred             HhCCHHHHHHHhcCCCCH-HHHHHHHHH---HHHhcCCcchHHHHHhcC-cHHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 025930           27 EAGGLTSLLMLLGSSEDE-TIHRVAAGA---IANLAMNETNQELIMTQG-GIGLLSTTAANAEDPQTLRMVAGAIANLCG  101 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~-~~~~~a~~~---L~~la~~~~~~~~i~~~g-~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~  101 (246)
                      -.|++..++.++.+. ++ ..+..+..+   +..+...+..+.. ++.| .+..+...+++ +..+.+..++.-+..|-+
T Consensus       289 ~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~  365 (675)
T KOG0212|consen  289 LSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYH  365 (675)
T ss_pred             hhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHh
Confidence            467777888887664 33 233332222   3333333333333 3333 35566667776 567888888888888888


Q ss_pred             CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930          102 NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR  181 (246)
Q Consensus       102 ~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~  181 (246)
                      ...++-........+.|++-|++.+.++...+...+.++|..+      .++..+      .++..|.++...+..-+..
T Consensus       366 ~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~------~~~~~~------~fl~sLL~~f~e~~~~l~~  433 (675)
T KOG0212|consen  366 KAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS------NSPNLR------KFLLSLLEMFKEDTKLLEV  433 (675)
T ss_pred             hCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc------ccccHH------HHHHHHHHHHhhhhHHHHh
Confidence            8888777778889999999999999999999999999999642      222221      2345566666777777778


Q ss_pred             HHHHHHHHhcc--Cchh
Q 025930          182 HIELALCHLAQ--HEVN  196 (246)
Q Consensus       182 ~a~~aL~~La~--~~~~  196 (246)
                      .+...+..||.  +++.
T Consensus       434 Rg~lIIRqlC~lL~aE~  450 (675)
T KOG0212|consen  434 RGNLIIRQLCLLLNAER  450 (675)
T ss_pred             hhhHHHHHHHHHhCHHH
Confidence            88888888886  4444

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=96.63  E-value=0.23  Score=42.98  Aligned_cols=209  Identities=13%  Similarity=0.151  Sum_probs=143.5

Q ss_pred             HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-Cc-chHHHHHh-cCc-HHHHHHHHhc---C-CC--------hH
Q 025930           24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NE-TNQELIMT-QGG-IGLLSTTAAN---A-ED--------PQ   87 (246)
Q Consensus        24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~-~~~~~i~~-~g~-i~~L~~ll~~---~-~~--------~~   87 (246)
                      .|.+.. ++.+-..|++. .+.+...+.+.|.++.. +. ...+.+.. -+. .+.+..++..   . .+        +.
T Consensus        52 ~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s  129 (330)
T PF11707_consen   52 SILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS  129 (330)
T ss_pred             HHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence            344343 88888889886 56677789999999976 53 44444443 333 3344445421   1 11        16


Q ss_pred             HHHHHHHHHHHhh--CCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930           88 TLRMVAGAIANLC--GNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA  164 (246)
Q Consensus        88 ~~~~a~~aL~~L~--~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~  164 (246)
                      ++......+..+.  .++..+..+. +.+.+..+.+-|..++.++....+.+|..-...+.    .-....|..+.+...
T Consensus       130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~----~v~r~~K~~~fn~~~  205 (330)
T PF11707_consen  130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS----SVSRSTKCKLFNEWT  205 (330)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC----CCChhhhhhhcCHHH
Confidence            7766666665554  5677777766 45578888899989899999999999996443221    122566777788889


Q ss_pred             hHHHHHcccCCCh----hHHHHHHHHHHHhccCchhHHHHH------------------------hCCcHHHHHHHHhcC
Q 025930          165 LPWIVQNSNNEAS----PIRRHIELALCHLAQHEVNAKDMI------------------------SGGALWELVRISRDC  216 (246)
Q Consensus       165 i~~Lv~ll~~~~~----~v~~~a~~aL~~La~~~~~~~~i~------------------------~~g~i~~L~~ll~~~  216 (246)
                      +..|+.+....++    .+...+-..|..+|.++..--.+-                        ..+.+..++..++..
T Consensus       206 L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~  285 (330)
T PF11707_consen  206 LSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPW  285 (330)
T ss_pred             HHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCC
Confidence            9999999988888    899999999999987665422222                        124455566666667


Q ss_pred             CHHHHHHHHHHHHccChhHHHH
Q 025930          217 SREDIRTLAHRTLTSSPAFQAE  238 (246)
Q Consensus       217 ~~~~~~~~A~~~L~~~~~~~~e  238 (246)
                      ++..+++...+.+..-|++-+.
T Consensus       286 e~~~q~~Lvl~Il~~~PeLva~  307 (330)
T PF11707_consen  286 EDDRQQELVLKILKACPELVAP  307 (330)
T ss_pred             ccHHHHHHHHHHHHHChHHHHH
Confidence            7788899999999998887653

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.48  E-value=0.052  Score=43.13  Aligned_cols=119  Identities=15%  Similarity=0.116  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHhcC----------------cHHHHHHHHhc-----CCChHHHHHHHHHHHHhhCCch
Q 025930           46 IHRVAAGAIANLAMNETNQELIMTQG----------------GIGLLSTTAAN-----AEDPQTLRMVAGAIANLCGNDK  104 (246)
Q Consensus        46 ~~~~a~~~L~~la~~~~~~~~i~~~g----------------~i~~L~~ll~~-----~~~~~~~~~a~~aL~~L~~~~~  104 (246)
                      .-..++..|.|++..++....+.+.+                .+..|+..+..     .+...-..+.+..+.|++..++
T Consensus        11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~   90 (192)
T PF04063_consen   11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE   90 (192)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence            45568899999999887777555432                24466665554     1223446689999999999999


Q ss_pred             hHHHHHhc--CC--HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh---CCChHHHHHccc
Q 025930          105 LQLKLRGE--GG--IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID---DGALPWIVQNSN  173 (246)
Q Consensus       105 ~~~~l~~~--g~--i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~---~g~i~~Lv~ll~  173 (246)
                      .++.+.+.  +.  +..|+.+..+.+..=+.-+++++.|+|+.         .+....+..   .+.+|.|+--+.
T Consensus        91 gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd---------~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   91 GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD---------TDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc---------HhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999854  34  66777777777666677888999999974         244455554   356676655444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.46  E-value=0.062  Score=49.42  Aligned_cols=152  Identities=17%  Similarity=0.157  Sum_probs=106.2

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH---HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ---ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL  105 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~---~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~  105 (246)
                      -++...+.+|++. .|.++.+|+...+.|+.--.+.   +.+.+.|.|  |.+-+.. +++++.-..++|++.+.+....
T Consensus       604 ~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge-~ypEvLgsil~Ai~~I~sv~~~  679 (975)
T COG5181         604 MIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGE-DYPEVLGSILKAICSIYSVHRF  679 (975)
T ss_pred             HHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCc-ccHHHHHHHHHHHHHHhhhhcc
Confidence            3466778899986 7888999999988887553322   333343332  3344554 5788888888998888744433


Q ss_pred             HHHH-HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          106 QLKL-RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       106 ~~~l-~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                      .+.- =-.|++|.|...|++.+..+..+.+..+.-+|...     +.....|+.|.   .---|+++|++++.++|.+|.
T Consensus       680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~-----peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~  751 (975)
T COG5181         680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNS-----PEYIGVREWMR---ICFELVDSLKSWNKEIRRNAT  751 (975)
T ss_pred             cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcC-----cccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhh
Confidence            2111 12478999999999999999999998888888632     12234455544   334678889999999999999


Q ss_pred             HHHHHhcc
Q 025930          185 LALCHLAQ  192 (246)
Q Consensus       185 ~aL~~La~  192 (246)
                      ..++.++.
T Consensus       752 ~tfG~Is~  759 (975)
T COG5181         752 ETFGCISR  759 (975)
T ss_pred             hhhhhHHh
Confidence            88887754

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.14  Score=47.89  Aligned_cols=184  Identities=13%  Similarity=0.133  Sum_probs=117.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLK  108 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~  108 (246)
                      -+.++.+|+++ .|-+++.|+.+++.+-.. ++.   +.  ..+|.|..-|.+ +|+.++..|.+.++.|+ .+|.+.-.
T Consensus       146 a~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeD-pDp~V~SAAV~VICELArKnPknyL~  218 (877)
T KOG1059|consen  146 ADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLED-PDPSVVSAAVSVICELARKNPQNYLQ  218 (877)
T ss_pred             HHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccC-CCchHHHHHHHHHHHHHhhCCccccc
Confidence            45678888886 788899999999988544 322   11  257888888887 78999999999999999 67877544


Q ss_pred             HHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCCh-hHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS-PIRRHIELA  186 (246)
Q Consensus       109 l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~v~~~a~~a  186 (246)
                      +     .|.+.++|- +.+..+....+..+++|+-.+        |...     ...+|+|-.++++... .+-+.+..+
T Consensus       219 L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplE--------PRLg-----KKLieplt~li~sT~AmSLlYECvNT  280 (877)
T KOG1059|consen  219 L-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLE--------PRLG-----KKLIEPITELMESTVAMSLLYECVNT  280 (877)
T ss_pred             c-----cHHHHHHHhccCCCeehHHHHHHHhhccccC--------chhh-----hhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            3     577888886 566778899999999999432        3322     3578899998877643 444555544


Q ss_pred             HHHh--cc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH----HHHccChhHHHHHHHh
Q 025930          187 LCHL--AQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAH----RTLTSSPAFQAEMRRL  242 (246)
Q Consensus       187 L~~L--a~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~----~~L~~~~~~~~e~~~~  242 (246)
                      +..-  +. .+++-..+.-  +++.|-.++. ++++..+..+.    +.++.+|++--+=+.+
T Consensus       281 VVa~s~s~g~~d~~asiqL--CvqKLr~fie-dsDqNLKYlgLlam~KI~ktHp~~Vqa~kdl  340 (877)
T KOG1059|consen  281 VVAVSMSSGMSDHSASIQL--CVQKLRIFIE-DSDQNLKYLGLLAMSKILKTHPKAVQAHKDL  340 (877)
T ss_pred             heeehhccCCCCcHHHHHH--HHHHHhhhhh-cCCccHHHHHHHHHHHHhhhCHHHHHHhHHH
Confidence            4322  22 1122111111  3445555554 34444554444    3335677665554443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.40  E-value=0.062  Score=44.43  Aligned_cols=139  Identities=11%  Similarity=0.005  Sum_probs=95.8

Q ss_pred             HHhcCCcchHHHHHhcCcHHHHHHHHhcCC----ChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhcCCCHH
Q 025930           55 ANLAMNETNQELIMTQGGIGLLSTTAANAE----DPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVRCGHPD  128 (246)
Q Consensus        55 ~~la~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~~~~~~  128 (246)
                      --+|.|++.|..+.+.+..-.|...+....    .+.++-.+++.+..+.  .+++....+.+...+|.+++.|..+++-
T Consensus        75 Q~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel  154 (262)
T PF04078_consen   75 QCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL  154 (262)
T ss_dssp             HHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH
T ss_pred             HHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH
Confidence            355899999999999887766666665421    2556778899999998  4677778888999999999999988766


Q ss_pred             HHHHHHHHHHHhhcccccccccCChhhhHHHHh--------CCChHHHHH-cccCCChhHHHHHHHHHHHhccCchhHHH
Q 025930          129 VLAQVARGIANFAKCESRASTQGTKTGRSLLID--------DGALPWIVQ-NSNNEASPIRRHIELALCHLAQHEVNAKD  199 (246)
Q Consensus       129 ~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--------~g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~~~~~~  199 (246)
                      .+.-|..++..+-..         +.+-+-+.+        ..++..++. +...+++++-++..+|...|+.++..|..
T Consensus       155 SKtvAtfIlqKIL~d---------d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a  225 (262)
T PF04078_consen  155 SKTVATFILQKILLD---------DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA  225 (262)
T ss_dssp             HHHHHHHHHHHHHHS---------HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HHHHHHHHHHHHHcc---------hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence            666666666554421         232222221        123444443 45667999999999999999999999988


Q ss_pred             HHh
Q 025930          200 MIS  202 (246)
Q Consensus       200 i~~  202 (246)
                      +.+
T Consensus       226 L~~  228 (262)
T PF04078_consen  226 LRQ  228 (262)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.37  E-value=0.35  Score=41.94  Aligned_cols=197  Identities=12%  Similarity=0.049  Sum_probs=141.6

Q ss_pred             HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHH-----HHHhcCcHHHHHHHHhcCCChHHHHHHHHHH
Q 025930           23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQE-----LIMTQGGIGLLSTTAANAEDPQTLRMVAGAI   96 (246)
Q Consensus        23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~-----~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL   96 (246)
                      +.+...|.+..|+..|..- +-+.++.++.+..++-.. .+.+.     .+. ...-.++..++...+++++--.+-..|
T Consensus        70 ~Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~ml  147 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHH
Confidence            4566789999999999886 677788888888888655 22322     222 222445556666666777776788888


Q ss_pred             HHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC---ChHHHHHccc
Q 025930           97 ANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG---ALPWIVQNSN  173 (246)
Q Consensus        97 ~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g---~i~~Lv~ll~  173 (246)
                      +.++..+...+.+.....+..+.+....++-++..-|..++..+-.        ............+   .+.....|+.
T Consensus       148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt--------~hk~~~a~fl~~n~d~ff~~~~~Ll~  219 (335)
T PF08569_consen  148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLT--------RHKKLVAEFLSNNYDRFFQKYNKLLE  219 (335)
T ss_dssp             HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH--------SSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred             HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            8888888888888888889999999999999999999999997542        2245555555443   4667788999


Q ss_pred             CCChhHHHHHHHHHHHhccCchhHHHHHh----CCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          174 NEASPIRRHIELALCHLAQHEVNAKDMIS----GGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       174 ~~~~~v~~~a~~aL~~La~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      +++=-+|..++..|+.+-.++.+-..|..    ..-+..++.+++ +..+.++-.|.-..+
T Consensus       220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFK  279 (335)
T PF08569_consen  220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFK  279 (335)
T ss_dssp             -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHH
T ss_pred             CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHH
Confidence            99999999999999999998888766653    244455566666 455567777776654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.23  E-value=0.045  Score=42.95  Aligned_cols=91  Identities=18%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             ChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           85 DPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      |+.++.+++.++.-|+ ..+...+.     .++.+...|+++++.+++.|+..|..|...+       ....      .|
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-------~ik~------k~   62 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILED-------MIKV------KG   62 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------ceee------hh
Confidence            5778889999999998 44443333     3788999999999999999999999987421       1111      23


Q ss_pred             C-hHHHHHcccCCChhHHHHHHHHHHHhccC
Q 025930          164 A-LPWIVQNSNNEASPIRRHIELALCHLAQH  193 (246)
Q Consensus       164 ~-i~~Lv~ll~~~~~~v~~~a~~aL~~La~~  193 (246)
                      - +..++.++.+++++++..|..++..+...
T Consensus        63 ~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   63 QLFSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            3 47788888999999999999999999774

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.17  Score=47.37  Aligned_cols=144  Identities=14%  Similarity=0.103  Sum_probs=89.3

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchh
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKL  105 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~  105 (246)
                      ...+|.|.+-|..+ ||.++..|+.+++.||.. +.+.-.     .-|.+..++....+.=+.........+|+ .-|..
T Consensus       180 r~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL  253 (877)
T KOG1059|consen  180 RPCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL  253 (877)
T ss_pred             hhhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence            45689999999986 999999999999999865 544433     35788888876555545555666666666 34554


Q ss_pred             HHHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHH--HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHH
Q 025930          106 QLKLRGEGGIKALLGMVRCGH-PDVLAQVARGIA--NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRH  182 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~--nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~  182 (246)
                      .+.+     ++++..++.+.. ..+...++.++.  |++..       ++++.....   =+++.|-.++.+.|+.+++.
T Consensus       254 gKKL-----ieplt~li~sT~AmSLlYECvNTVVa~s~s~g-------~~d~~asiq---LCvqKLr~fiedsDqNLKYl  318 (877)
T KOG1059|consen  254 GKKL-----IEPITELMESTVAMSLLYECVNTVVAVSMSSG-------MSDHSASIQ---LCVQKLRIFIEDSDQNLKYL  318 (877)
T ss_pred             hhhh-----hhHHHHHHHhhHHHHHHHHHHHHheeehhccC-------CCCcHHHHH---HHHHHHhhhhhcCCccHHHH
Confidence            4443     677888777653 224444444333  33321       111111111   13556666666667777777


Q ss_pred             HHHHHHHhcc
Q 025930          183 IELALCHLAQ  192 (246)
Q Consensus       183 a~~aL~~La~  192 (246)
                      ++.|+..++.
T Consensus       319 gLlam~KI~k  328 (877)
T KOG1059|consen  319 GLLAMSKILK  328 (877)
T ss_pred             HHHHHHHHhh
Confidence            7777776654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.18  E-value=0.22  Score=45.25  Aligned_cols=171  Identities=12%  Similarity=0.133  Sum_probs=115.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC---hHHHHHHHHHHHHhhCCchhHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED---PQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~---~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      ...+.+.+.++ +...+..|...|..++.+......++...|+..|..++.++..   ..+....+.+...+-...-..=
T Consensus        85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            46678888887 4455777999999999999999999999999999999998654   3445455555555541111100


Q ss_pred             HHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL  185 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~  185 (246)
                      ..+....|.....+..  ..+..+...|+..|-++..        +++..++.+.++--++.|+..+...+..++..|..
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl--------~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia  235 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVL--------GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA  235 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh--------CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence            0111122233333332  3345577888888888885        45678888888888999999999999999888777


Q ss_pred             HHHHhcc--CchhHHHHHhCCcHHHHH
Q 025930          186 ALCHLAQ--HEVNAKDMISGGALWELV  210 (246)
Q Consensus       186 aL~~La~--~~~~~~~i~~~g~i~~L~  210 (246)
                      .+-.|-.  .++-|+.+.+.-....+.
T Consensus       236 l~nal~~~a~~~~R~~~~~~l~~~~~R  262 (713)
T KOG2999|consen  236 LLNALFRKAPDDKRFEMAKSLEQKQFR  262 (713)
T ss_pred             HHHHHHhhCChHHHHHHHHHHHHHHHH
Confidence            7766632  444566666543333333

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.18  Score=43.18  Aligned_cols=176  Identities=13%  Similarity=0.077  Sum_probs=129.6

Q ss_pred             HHHHHHHhcCC---CCHHHHHHHHHHHHHhcCC-cchH----HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 025930           31 LTSLLMLLGSS---EDETIHRVAAGAIANLAMN-ETNQ----ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN  102 (246)
Q Consensus        31 i~~Li~ll~~~---~~~~~~~~a~~~L~~la~~-~~~~----~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~  102 (246)
                      +|.+.-.|+.+   +|..++..++..++.+..+ +.|.    ..++..|..+.++..+.. +|.++-..|...+..++..
T Consensus        80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrialf  158 (524)
T KOG4413|consen   80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIALF  158 (524)
T ss_pred             chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhc
Confidence            44444444432   3667788899999988777 3222    234567778888888876 5677888899999999998


Q ss_pred             chhHHHHHhcCCHHHHHH--HhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-CChhH
Q 025930          103 DKLQLKLRGEGGIKALLG--MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-EASPI  179 (246)
Q Consensus       103 ~~~~~~l~~~g~i~~L~~--ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~v  179 (246)
                      +..-+.+.+....+.+-.  +....+.-.+..+...+-.+.+        -+++.-....+.|.+..|..-++. .|.-+
T Consensus       159 paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifS--------iSpesaneckkSGLldlLeaElkGteDtLV  230 (524)
T KOG4413|consen  159 PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFS--------ISPESANECKKSGLLDLLEAELKGTEDTLV  230 (524)
T ss_pred             HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHh--------cCHHHHhHhhhhhHHHHHHHHhcCCcceee
Confidence            888888887776655422  2223334566777777777664        346777777778999988887776 57778


Q ss_pred             HHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930          180 RRHIELALCHLAQHEVNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       180 ~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~  215 (246)
                      +..+......|+..+-.++-+.+.|.++.+..++..
T Consensus       231 ianciElvteLaeteHgreflaQeglIdlicnIIsG  266 (524)
T KOG4413|consen  231 IANCIELVTELAETEHGREFLAQEGLIDLICNIISG  266 (524)
T ss_pred             hhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence            888999999999888888888899999999999975

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.11  E-value=0.38  Score=44.12  Aligned_cols=164  Identities=12%  Similarity=0.054  Sum_probs=98.4

Q ss_pred             HHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHH
Q 025930           10 SVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTL   89 (246)
Q Consensus        10 ~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~   89 (246)
                      .++..++.+....-..-...+||.+.+.|-+. .+.+++.+..+|.+++.--+|.....   .+|.|++.+.+. ...+.
T Consensus       276 ellg~m~~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~~---~ip~Lld~l~dp-~~~~~  350 (569)
T KOG1242|consen  276 ELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQK---IIPTLLDALADP-SCYTP  350 (569)
T ss_pred             HHHHHHHHhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHHhcCc-ccchH
Confidence            33444443333344455678999999999885 89999999999999977765665332   577888887763 22233


Q ss_pred             HHHHHHHHHhhCCchhHHHHHhcCC----HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh
Q 025930           90 RMVAGAIANLCGNDKLQLKLRGEGG----IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL  165 (246)
Q Consensus        90 ~~a~~aL~~L~~~~~~~~~l~~~g~----i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i  165 (246)
                       .+...|..=.--.+     ++.-.    +|.|-+-+...+..+++.++.++.|+|.--      .++..-..+.. ..+
T Consensus       351 -e~~~~L~~ttFV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv------eDp~~lapfl~-~Ll  417 (569)
T KOG1242|consen  351 -ECLDSLGATTFVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV------EDPKDLAPFLP-SLL  417 (569)
T ss_pred             -HHHHhhcceeeeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh------cCHHHHhhhHH-HHh
Confidence             22223222110000     11122    444444555567788899999999999631      01221221221 234


Q ss_pred             HHHHHcccCCChhHHHHHHHHHHHhc
Q 025930          166 PWIVQNSNNEASPIRRHIELALCHLA  191 (246)
Q Consensus       166 ~~Lv~ll~~~~~~v~~~a~~aL~~La  191 (246)
                      |-+-..+....|++|..+.++|+.+-
T Consensus       418 p~lk~~~~d~~PEvR~vaarAL~~l~  443 (569)
T KOG1242|consen  418 PGLKENLDDAVPEVRAVAARALGALL  443 (569)
T ss_pred             hHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            55555555568999999999997763

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.08  E-value=0.051  Score=38.19  Aligned_cols=84  Identities=13%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhh-CCc-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--CCC
Q 025930           89 LRMVAGAIANLC-GND-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--DGA  164 (246)
Q Consensus        89 ~~~a~~aL~~L~-~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~g~  164 (246)
                      +..++.+|...+ .-+ .....+  .-.+++++..+.++++.++..|+.+|.|++.           ..+..+..  ...
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k-----------~~~~~~l~~f~~I   69 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISK-----------VARGEILPYFNEI   69 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            345566666665 222 222222  2368999999999999999999999999994           55555553  356


Q ss_pred             hHHHHHcccCCChhHHHHHHH
Q 025930          165 LPWIVQNSNNEASPIRRHIEL  185 (246)
Q Consensus       165 i~~Lv~ll~~~~~~v~~~a~~  185 (246)
                      ++.|..++.+.++.||..|..
T Consensus        70 F~~L~kl~~D~d~~Vr~~a~~   90 (97)
T PF12755_consen   70 FDALCKLSADPDENVRSAAEL   90 (97)
T ss_pred             HHHHHHHHcCCchhHHHHHHH
Confidence            788889999999999877743

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.06  E-value=0.37  Score=45.87  Aligned_cols=92  Identities=11%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      +|+.++-.|.+++..+ ..++.-..     .++++.+++.++++.+++.|+-++..+=.           -.++...+.|
T Consensus       104 ~N~~iR~~AlR~ls~l-~~~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~-----------ld~~l~~~~g  166 (757)
T COG5096         104 PNEEIRGFALRTLSLL-RVKELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYR-----------LDKDLYHELG  166 (757)
T ss_pred             CCHHHHHHHHHHHHhc-ChHHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHh-----------cCHhhhhccc
Confidence            5788888877777754 22222222     47889999999999999999999998762           3344555678


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      .+..+..++.+.+|.+..+|+.+|..+.-
T Consensus       167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         167 LIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            89999999999999999999999988754

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.97  E-value=0.052  Score=41.71  Aligned_cols=145  Identities=14%  Similarity=0.129  Sum_probs=90.9

Q ss_pred             HHHHHHHHhc-CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930           73 IGLLSTTAAN-AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQG  151 (246)
Q Consensus        73 i~~L~~ll~~-~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  151 (246)
                      +..++..+.. ...++++..+.-++..+-  +..++...+ -.-+-+-..+..++.+-...+..++..+=        |+
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lf--------p~   73 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALF--------PG   73 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHC--------TT
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHh--------CC
Confidence            3444443332 234668888888887773  333333222 12222333334433445667777777665        45


Q ss_pred             ChhhhHHHH-hCCChHHHHHccc--CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHH-HHHHHHH
Q 025930          152 TKTGRSLLI-DDGALPWIVQNSN--NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSRED-IRTLAHR  227 (246)
Q Consensus       152 ~~~~~~~l~-~~g~i~~Lv~ll~--~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~-~~~~A~~  227 (246)
                      .++.-..+. .+|..+.+..++.  ..+..++..++.+|..=|.+...| ..+...++++|.++.+.++++. +|..|.-
T Consensus        74 ~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v  152 (157)
T PF11701_consen   74 PPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAV  152 (157)
T ss_dssp             THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred             CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence            566666655 7888999999998  778889888999888777776665 5555678899999997666665 6766655


Q ss_pred             HH
Q 025930          228 TL  229 (246)
Q Consensus       228 ~L  229 (246)
                      .|
T Consensus       153 ~L  154 (157)
T PF11701_consen  153 GL  154 (157)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.91  E-value=0.068  Score=35.41  Aligned_cols=68  Identities=12%  Similarity=-0.003  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCC
Q 025930           47 HRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGG  114 (246)
Q Consensus        47 ~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~  114 (246)
                      .+.|.+++++++..+..-..+.+.+.++.++++..+.+...++-.+..+|.-++...+..+.+.+.|.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            56789999999999888888888899999999999877778898899999999999999998888774

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.094  Score=47.68  Aligned_cols=157  Identities=14%  Similarity=0.125  Sum_probs=105.0

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHH---HHHHHhhCCchh
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVA---GAIANLCGNDKL  105 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~---~aL~~L~~~~~~  105 (246)
                      ..++.++..+.++ ++.++..|..-+.....-....-...-.|.+..++.++.+.+...+.+.+.   +-|..+++.+..
T Consensus       250 ~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~  328 (675)
T KOG0212|consen  250 DMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL  328 (675)
T ss_pred             cchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh
Confidence            3477788888876 788888887777776655433333333455566666666633223443332   234445555555


Q ss_pred             HHHHHhcC-CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          106 QLKLRGEG-GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       106 ~~~l~~~g-~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                      ++. ++.| .+..+.+.++++..+.+..+..-+.-|-..         ..++-.......++.|..-+.+.++++-..++
T Consensus       329 ~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~---------~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L  398 (675)
T KOG0212|consen  329 KEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK---------APGQLLVHNDSIFLTLLKTLSDRSDEVVLLAL  398 (675)
T ss_pred             ccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh---------CcchhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence            544 5555 688899999999999999998777766521         12333333566889999999999999999999


Q ss_pred             HHHHHhccCchh
Q 025930          185 LALCHLAQHEVN  196 (246)
Q Consensus       185 ~aL~~La~~~~~  196 (246)
                      ..+.++|.+++.
T Consensus       399 ~lla~i~~s~~~  410 (675)
T KOG0212|consen  399 SLLASICSSSNS  410 (675)
T ss_pred             HHHHHHhcCccc
Confidence            999999986654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.82  E-value=0.036  Score=38.95  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchH--HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ--ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL   99 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L   99 (246)
                      .-++++++..+.+. |+.++..|+.+|.|++..-...  ..+.  ..++.|..++.+ .|+.++ .++..|-++
T Consensus        26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~D-~d~~Vr-~~a~~Ld~l   94 (97)
T PF12755_consen   26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSAD-PDENVR-SAAELLDRL   94 (97)
T ss_pred             HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcC-CchhHH-HHHHHHHHH
Confidence            45699999999886 8889999999999998663221  1222  356667777776 567777 566666554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.78  E-value=0.14  Score=49.80  Aligned_cols=176  Identities=16%  Similarity=0.157  Sum_probs=128.0

Q ss_pred             hccccccHHHHHHhCCHHHHHHHhcCC-C-CHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHH
Q 025930           15 DIRAQSNQEKIVEAGGLTSLLMLLGSS-E-DETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRM   91 (246)
Q Consensus        15 ~~~~~~~~~~i~~~g~i~~Li~ll~~~-~-~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~   91 (246)
                      +|..++....++..+|-.-.++.|..+ . ++.-+--|+.+|+.+..+ .-.++...+.+.+.+.+..+.+..++-++..
T Consensus       540 LAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW  619 (1387)
T KOG1517|consen  540 LAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQW  619 (1387)
T ss_pred             HhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHH
Confidence            466677777888888888888887762 1 234344489999999877 6688888888889988899988545777888


Q ss_pred             HHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhH-----------HH
Q 025930           92 VAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRS-----------LL  159 (246)
Q Consensus        92 a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~-----------~l  159 (246)
                      .+-+|..|= ..++.+=.=++.++...|..+|+.+.++++..|+.+|..+-..-+.    ..++...           .+
T Consensus       620 ~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d----~fde~~~~~~~~~~l~~~~~  695 (1387)
T KOG1517|consen  620 LCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD----NFDEQTLVVEEEIDLDDERT  695 (1387)
T ss_pred             HHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc----ccchhhhhhhhhhcchhhhh
Confidence            888888886 4566655556788999999999999999999999999977542000    0111111           11


Q ss_pred             HhCCChH----HHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930          160 IDDGALP----WIVQNSNNEASPIRRHIELALCHLAQHE  194 (246)
Q Consensus       160 ~~~g~i~----~Lv~ll~~~~~~v~~~a~~aL~~La~~~  194 (246)
                      .-+..++    .++.+++.+.+-++.+...+|.+.....
T Consensus       696 ~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  696 SIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             hHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence            1122233    7788889999999999999999887743

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.77  E-value=0.014  Score=31.73  Aligned_cols=28  Identities=25%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             hHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          165 LPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      +|.+++++.+++++||..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=1.3  Score=41.66  Aligned_cols=168  Identities=9%  Similarity=0.092  Sum_probs=100.1

Q ss_pred             hhhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC---CCHH---HHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHH
Q 025930            5 ILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS---EDET---IHRVAAGAIANLAMN-ETNQELIMTQGGIGLLS   77 (246)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~---~~~~---~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~   77 (246)
                      +.+.++++..+...++.-....-..+++.+++..+.+   .++.   .+.....-.-+++.+ +...+.++.  .+..|-
T Consensus       258 ~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg  335 (938)
T KOG1077|consen  258 QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLG  335 (938)
T ss_pred             HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHH
Confidence            3456666777755555544444445556666665522   1222   111122222345544 444444443  566666


Q ss_pred             HHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhh
Q 025930           78 TTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGR  156 (246)
Q Consensus        78 ~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~  156 (246)
                      +++++. ...++=-|+.-++.|++.+.....+-..  .+.++..|+ ..|..+++.|+..|-.+|-          .++.
T Consensus       336 ~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD----------~~Na  402 (938)
T KOG1077|consen  336 QFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD----------VSNA  402 (938)
T ss_pred             HHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc----------hhhH
Confidence            666653 3556666777777777665555555443  567777887 7789999999999998882          2333


Q ss_pred             HHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          157 SLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       157 ~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      +.     .+.-|++.+...+..+|+....=...|+.
T Consensus       403 k~-----IV~elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  403 KQ-----IVAELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            32     35567777777888999987766666653

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.65  E-value=0.56  Score=36.68  Aligned_cols=91  Identities=18%  Similarity=0.255  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCC-HHHHHHH
Q 025930           43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGG-IKALLGM  121 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~-i~~L~~l  121 (246)
                      +|.++..++.+++-|+..-++   +++ ..++.+...+++ +++.+++.|+.+|..|...+-.+-+    |. +..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~ve-~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---LVE-PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---HHH-hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence            467888899999988765321   121 247788888888 5899999999999999854332211    22 3667788


Q ss_pred             hcCCCHHHHHHHHHHHHHhhc
Q 025930          122 VRCGHPDVLAQVARGIANFAK  142 (246)
Q Consensus       122 l~~~~~~~~~~a~~~L~nL~~  142 (246)
                      +.+++++++..|...+..+..
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~   92 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLK   92 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHH
Confidence            889999999999999999884

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.61  E-value=0.1  Score=34.56  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           89 LRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        89 ~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      .+.+++|+.++++.+.....+.+.+.++.++++.. ++...++-.|..+|.-++         .+.++.+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis---------~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS---------STEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh---------CCHHHHHHHHHcC
Confidence            45899999999999888888888899999999997 667788999999999988         4568888777665

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.60  E-value=1.5  Score=38.76  Aligned_cols=102  Identities=15%  Similarity=0.305  Sum_probs=76.7

Q ss_pred             HHHHH-hCCHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHh-cC--CChHHHHHHHHH
Q 025930           23 EKIVE-AGGLTSLLMLLGSSE--DETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAA-NA--EDPQTLRMVAGA   95 (246)
Q Consensus        23 ~~i~~-~g~i~~Li~ll~~~~--~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~-~~--~~~~~~~~a~~a   95 (246)
                      ..+++ ......|-..+++..  .+.+-..|+.++..+-.+ +..-..+.|.|.++.+++.+. .+  ...++....-.+
T Consensus        99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~  178 (379)
T PF06025_consen   99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV  178 (379)
T ss_pred             ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            34556 455666666666642  355667789999988666 666677788999999998877 32  346677677789


Q ss_pred             HHHhhCCchhHHHHHhcCCHHHHHHHhcC
Q 025930           96 IANLCGNDKLQLKLRGEGGIKALLGMVRC  124 (246)
Q Consensus        96 L~~L~~~~~~~~~l~~~g~i~~L~~ll~~  124 (246)
                      +..+|.|....+.+.+.+.++.+++++.+
T Consensus       179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  179 LSAICLNNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence            99999999999999999999999887743

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.52  E-value=0.28  Score=46.81  Aligned_cols=175  Identities=14%  Similarity=0.047  Sum_probs=112.0

Q ss_pred             HHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCH--HHHHHHhcCCCH-H
Q 025930           53 AIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGI--KALLGMVRCGHP-D  128 (246)
Q Consensus        53 ~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i--~~L~~ll~~~~~-~  128 (246)
                      +|++.+.+ +++.+.+.+.||...+...++..++.+.+..+.+.+.|++...+.+.......-+  ..+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            78899877 8899999999999999999997777888999999999999555443332221111  233334444444 7


Q ss_pred             HHHHHHHHHHHhhcc-cccccccCC--------------hhhhHHHHhCCChHH-HHHccc-CCChhHHHHHHHHHHHhc
Q 025930          129 VLAQVARGIANFAKC-ESRASTQGT--------------KTGRSLLIDDGALPW-IVQNSN-NEASPIRRHIELALCHLA  191 (246)
Q Consensus       129 ~~~~a~~~L~nL~~~-~~~~~~~~~--------------~~~~~~l~~~g~i~~-Lv~ll~-~~~~~v~~~a~~aL~~La  191 (246)
                      ....+++.|+.+... +.....+..              +...........+.+ +..++. +..+..+.-|++++.++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            888899999987653 211000000              111111111222223 433443 346677888999999997


Q ss_pred             c-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHH
Q 025930          192 Q-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHR  227 (246)
Q Consensus       192 ~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~  227 (246)
                      . +++.++.+.+.|+.+.+..+-........+..+..
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (699)
T KOG3665|consen  654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL  690 (699)
T ss_pred             HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence            7 77788888999999998887764444444444433

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.52  E-value=0.27  Score=40.80  Aligned_cols=95  Identities=9%  Similarity=0.124  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930           89 LRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP  166 (246)
Q Consensus        89 ~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~  166 (246)
                      ...|+..|.-++ .++..+..+.+...+..+++++. ...+.++..++.+|..+..        +++.+...+.+.+++.
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLl--------d~p~N~r~FE~~~Gl~  179 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILL--------DSPENQRDFEELNGLS  179 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHH--------cChHHHHHHHHhCCHH
Confidence            446778888888 78889999999999999999994 5678889999988887663        6678888999999999


Q ss_pred             HHHHcccCC--ChhHHHHHHHHHHHhc
Q 025930          167 WIVQNSNNE--ASPIRRHIELALCHLA  191 (246)
Q Consensus       167 ~Lv~ll~~~--~~~v~~~a~~aL~~La  191 (246)
                      .++.++++.  +.+++..+...|.-.-
T Consensus       180 ~v~~llk~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  180 TVCSLLKSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             HHHHHHccccccHHHhHHHHHHHHHHH
Confidence            999999876  6688888877776553

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.49  E-value=0.22  Score=46.96  Aligned_cols=189  Identities=17%  Similarity=0.113  Sum_probs=125.3

Q ss_pred             ccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHH--HHH
Q 025930           16 IRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIA-NLAMNETNQELIMTQGGIGLLSTTAANAEDPQTL--RMV   92 (246)
Q Consensus        16 ~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~-~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~--~~a   92 (246)
                      |....-+...|..|+...|+.+...+ .+..+.++..+|. .+...- .+    ....++++...+..  |....  -.+
T Consensus       491 A~~K~~~~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~~-~~----~~~v~~~~~s~~~~--d~~~~en~E~  562 (748)
T KOG4151|consen  491 AKEKYERAKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFPG-ER----SYEVVKPLDSALHN--DEKGLENFEA  562 (748)
T ss_pred             hhhHHhcCccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCCC-Cc----hhhhhhhhcchhhh--hHHHHHHHHH
Confidence            45666677888999999999998876 4566777777777 222221 11    01245566565554  23222  257


Q ss_pred             HHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh-CCChHHHHH
Q 025930           93 AGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID-DGALPWIVQ  170 (246)
Q Consensus        93 ~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~-~g~i~~Lv~  170 (246)
                      +.++.||+ .++..++.+.+.-+++-+-..+..+++-++..++..+.||.+++        .-....+.+ ...++....
T Consensus       563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~--------~~~e~si~e~~~~l~~w~~  634 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP--------LLYERSIVEYKDRLKLWNL  634 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH--------HHHHHHhhccccCchHHHH
Confidence            88999998 45666777887777777777788888999999999999999753        233333444 345777777


Q ss_pred             cccCCChhHHHHHHHHHHHhcc-CchhHHHHH-hCCcHHHHHHHHhcCCHHH
Q 025930          171 NSNNEASPIRRHIELALCHLAQ-HEVNAKDMI-SGGALWELVRISRDCSRED  220 (246)
Q Consensus       171 ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~-~~g~i~~L~~ll~~~~~~~  220 (246)
                      ++...+.....++++++..++. ....+..+. -..+...++.++.+.....
T Consensus       635 ~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~  686 (748)
T KOG4151|consen  635 NLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEI  686 (748)
T ss_pred             HHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhh
Confidence            7776777888888888886655 444444233 3467777788887544443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.45  E-value=0.37  Score=39.99  Aligned_cols=94  Identities=9%  Similarity=0.167  Sum_probs=76.4

Q ss_pred             HHHHHHHHhc-CCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCC-
Q 025930           49 VAAGAIANLA-MNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCG-  125 (246)
Q Consensus        49 ~a~~~L~~la-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~-  125 (246)
                      .|..+|--++ .|+..|..+.+..++..++.++....++.++..++.+|..+. .++.|...+.+.+|+..++.++++. 
T Consensus       110 ~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~  189 (257)
T PF08045_consen  110 LALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKS  189 (257)
T ss_pred             HHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccc
Confidence            3566776664 668999999999999999999976567888888888887765 8899999999999999999999854 


Q ss_pred             -CHHHHHHHHHHHHHhhc
Q 025930          126 -HPDVLAQVARGIANFAK  142 (246)
Q Consensus       126 -~~~~~~~a~~~L~nL~~  142 (246)
                       +.+++-+++-.|.-+..
T Consensus       190 ~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  190 TDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccHHHhHHHHHHHHHHHc
Confidence             67787777777665543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=0.071  Score=49.94  Aligned_cols=182  Identities=15%  Similarity=0.135  Sum_probs=116.6

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh-HHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL-QLK  108 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~-~~~  108 (246)
                      ...+|...+++. ++.+++.|+....++-.  .+.+.....|.++.|..++.+ +++.+..+|+.+|..+...+.+ ..-
T Consensus       122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSD-SNPMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHhccCC-ChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCCCCcc
Confidence            467888888875 78878776666666533  345667778889999999996 6899999999999999833322 111


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                      ....-.+..++..+..-++.-+......+.+..        +.++  +++   ...+..+...+.+.++.+...+..++.
T Consensus       198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~--------p~d~--~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l  264 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYV--------PKDS--REA---EDICERLTPRLQHANSAVVLSAVKVIL  264 (734)
T ss_pred             cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC--------CCCc--hhH---HHHHHHhhhhhccCCcceEeehHHHHH
Confidence            111112344455554444555555555555444        2222  111   124556666777778888888999999


Q ss_pred             HhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       189 ~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      ++...........-....++|+.++...+  ++.-+|.+-+.
T Consensus       265 ~~~~~~~~~~~~~~~K~~~pl~tlls~~~--e~qyvaLrNi~  304 (734)
T KOG1061|consen  265 QLVKYLKQVNELLFKKVAPPLVTLLSSES--EIQYVALRNIN  304 (734)
T ss_pred             HHHHHHHHHHHHHHHHhcccceeeecccc--hhhHHHHhhHH
Confidence            88775444555555667777888886444  56666665554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.40  E-value=0.087  Score=41.35  Aligned_cols=78  Identities=9%  Similarity=0.027  Sum_probs=62.1

Q ss_pred             HHHHHhcCcHHHHHHHHhc--------CCChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHH
Q 025930           64 QELIMTQGGIGLLSTTAAN--------AEDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVA  134 (246)
Q Consensus        64 ~~~i~~~g~i~~L~~ll~~--------~~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~  134 (246)
                      -+.|++.||+..|+.++..        ..+......++.++..+.++..+...++ ..+++..++..+.+++..++..++
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            3577788999999988754        1345677788999999998888877777 477999999999999999999999


Q ss_pred             HHHHHhh
Q 025930          135 RGIANFA  141 (246)
Q Consensus       135 ~~L~nL~  141 (246)
                      .+|..+|
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.29  E-value=0.96  Score=43.18  Aligned_cols=153  Identities=14%  Similarity=0.101  Sum_probs=101.7

Q ss_pred             HHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHH
Q 025930           50 AAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDV  129 (246)
Q Consensus        50 a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~  129 (246)
                      +=.+|..++.+++....      ++-+++...+ .|.++++-..--|...+........+    ++..+.+=+.++++.+
T Consensus        40 mK~iIa~M~~G~dmssL------f~dViK~~~t-rd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~d~N~~i  108 (757)
T COG5096          40 MKKIIAQMSLGEDMSSL------FPDVIKNVAT-RDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQDPNEEI  108 (757)
T ss_pred             HHHHHHHHhcCCChHHH------HHHHHHHHHh-cCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhccCCCHHH
Confidence            33456666666542222      2223333333 57788877777777776333322222    3566778888999999


Q ss_pred             HHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHH
Q 025930          130 LAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWEL  209 (246)
Q Consensus       130 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L  209 (246)
                      +-.|+++++.+=.          ++    +. ...++++.+++.++++.||+.|+.|+..+=.-  .+...-+.|.+..+
T Consensus       109 R~~AlR~ls~l~~----------~e----l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l  171 (757)
T COG5096         109 RGFALRTLSLLRV----------KE----LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDIL  171 (757)
T ss_pred             HHHHHHHHHhcCh----------HH----HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHH
Confidence            9999988887652          12    11 24688999999999999999999999999542  23445567888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHcc
Q 025930          210 VRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       210 ~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      ..++.+. ++.+.+.|..+|..
T Consensus       172 ~~l~~D~-dP~Vi~nAl~sl~~  192 (757)
T COG5096         172 KELVADS-DPIVIANALASLAE  192 (757)
T ss_pred             HHHhhCC-CchHHHHHHHHHHH
Confidence            8888854 45566777777764

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.19  E-value=1.1  Score=41.38  Aligned_cols=119  Identities=16%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930          101 GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR  180 (246)
Q Consensus       101 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~  180 (246)
                      .+|+. ..+++ |.+..+++-..+++..++..++..|+-++-+-         .--....-+|.+..|..-+.+..+.||
T Consensus        81 ~dpeg-~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v---------~eIDe~l~N~L~ekl~~R~~DRE~~VR  149 (885)
T COG5218          81 DDPEG-EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVV---------REIDEVLANGLLEKLSERLFDREKAVR  149 (885)
T ss_pred             CChhh-hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            45555 44433 56777777788999999999999999888321         111133446778888887777889999


Q ss_pred             HHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       181 ~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      ..|+.+|+.+-....+-+..    ..-.|+.+++.+...++|.+|.--+-..++
T Consensus       150 ~eAv~~L~~~Qe~~~neen~----~~n~l~~~vqnDPS~EVRr~allni~vdns  199 (885)
T COG5218         150 REAVKVLCYYQEMELNEENR----IVNLLKDIVQNDPSDEVRRLALLNISVDNS  199 (885)
T ss_pred             HHHHHHHHHHHhccCChHHH----HHHHHHHHHhcCcHHHHHHHHHHHeeeCCC
Confidence            99999999986533332222    233677888888888899988877765444

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.07  E-value=2.1  Score=37.86  Aligned_cols=158  Identities=13%  Similarity=0.152  Sum_probs=106.3

Q ss_pred             HHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC-------------------------CC--------hHHHHHHHHH
Q 025930           50 AAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA-------------------------ED--------PQTLRMVAGA   95 (246)
Q Consensus        50 a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~-------------------------~~--------~~~~~~a~~a   95 (246)
                      |+..|-.+... +..-..+.+.||+..+++.+..+                         .+        ..+.+..+.+
T Consensus         4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~   83 (379)
T PF06025_consen    4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF   83 (379)
T ss_pred             HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence            44555555443 44556677788888776665320                         01        1223334444


Q ss_pred             HHHhhC-CchhHHH---HHhcC-CHHHHHHHhcCC---CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHH
Q 025930           96 IANLCG-NDKLQLK---LRGEG-GIKALLGMVRCG---HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPW  167 (246)
Q Consensus        96 L~~L~~-~~~~~~~---l~~~g-~i~~L~~ll~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~  167 (246)
                      +..+.. +......   +++.+ ....|...+++.   -+.+...|+.++..+-.        ..|..-..+.+.|.++.
T Consensus        84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~--------nePT~~~~l~e~Gl~~~  155 (379)
T PF06025_consen   84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIH--------NEPTSFSILQEAGLIDA  155 (379)
T ss_pred             HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHh--------cCCchhHHHHHcCChHH
Confidence            444445 3433333   44523 445555555543   46788889999998885        44788889999999999


Q ss_pred             HHHccc-CC---ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930          168 IVQNSN-NE---ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       168 Lv~ll~-~~---~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~  215 (246)
                      ++..+. .+   +.++-...-.+|..+|-|.++.+.+.+.+.++.+.+++.+
T Consensus       156 ~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  156 FLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence            988887 44   5566666678999999999999999999999999999964

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=95.04  E-value=1.1  Score=37.30  Aligned_cols=171  Identities=17%  Similarity=0.167  Sum_probs=102.8

Q ss_pred             HHHHHHHhcCCcchHHHHHhcC-c-HHHHHHHHhcC---CChHHHHHHHHHHHHhhCCchhHHHHHhc-C-CHHHHHHHh
Q 025930           50 AAGAIANLAMNETNQELIMTQG-G-IGLLSTTAANA---EDPQTLRMVAGAIANLCGNDKLQLKLRGE-G-GIKALLGMV  122 (246)
Q Consensus        50 a~~~L~~la~~~~~~~~i~~~g-~-i~~L~~ll~~~---~~~~~~~~a~~aL~~L~~~~~~~~~l~~~-g-~i~~L~~ll  122 (246)
                      +...++-+..++..-..+...+ + ...+..++...   ..+..+..++++++|+..++..+..+... + .+-..+..+
T Consensus        83 ~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~  162 (268)
T PF08324_consen   83 ALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSL  162 (268)
T ss_dssp             HHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCC
T ss_pred             HHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHH
Confidence            4445555566665555554433 2 34444444433   34666778999999999888888777643 2 333333333


Q ss_pred             cCC----CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc-cC-CChhHHHHHHHHHHHhccCchh
Q 025930          123 RCG----HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS-NN-EASPIRRHIELALCHLAQHEVN  196 (246)
Q Consensus       123 ~~~----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll-~~-~~~~v~~~a~~aL~~La~~~~~  196 (246)
                      ...    +..++..++..+.|++..-...  +.+.+.+     ...+..+...+ .. .++++...++.||++|...+..
T Consensus       163 ~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~--~~~~~~~-----~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  163 LSSLLDSNKNVRIALATLLLNLSVLLHKN--RSDEEWQ-----SELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             CTTS-HHHHHHHHHHHHHHHHHHHHHHHC--TS-CCHH-----HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             hhccccccHHHHHHHHHHHHHHHHHHHhc--CCChHHH-----HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            333    6778889999999998631000  0011111     11345555533 22 5899999999999999986666


Q ss_pred             HHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHH
Q 025930          197 AKDMIS-GGALWELVRISRDCSREDIRTLAHR  227 (246)
Q Consensus       197 ~~~i~~-~g~i~~L~~ll~~~~~~~~~~~A~~  227 (246)
                      .....+ -|....+........++.+++.+.+
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e  267 (268)
T PF08324_consen  236 AKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE  267 (268)
T ss_dssp             HHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence            566665 3555555555555666666666654

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.01  E-value=0.51  Score=36.93  Aligned_cols=83  Identities=17%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             CCchhHHHHHhcCCHHHHHHHhcC---------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh-CCChHHHHH
Q 025930          101 GNDKLQLKLRGEGGIKALLGMVRC---------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID-DGALPWIVQ  170 (246)
Q Consensus       101 ~~~~~~~~l~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~-~g~i~~Lv~  170 (246)
                      ......+.+++.||+..|+.+|..         .+.+....++.++..+..         +..+...+.. .+.+..|+.
T Consensus        95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n---------~~~G~~~v~~~~~~v~~i~~  165 (187)
T PF06371_consen   95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN---------TKYGLEAVLSHPDSVNLIAL  165 (187)
T ss_dssp             S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS---------SHHHHHHHHCSSSHHHHHHH
T ss_pred             CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc---------cHHHHHHHHcCcHHHHHHHH
Confidence            344667888899999999998851         345778888899998884         4577777775 678999999


Q ss_pred             cccCCChhHHHHHHHHHHHhcc
Q 025930          171 NSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       171 ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      .+.+++..++..++..|..+|.
T Consensus       166 ~L~s~~~~~r~~~leiL~~lc~  187 (187)
T PF06371_consen  166 SLDSPNIKTRKLALEILAALCL  187 (187)
T ss_dssp             T--TTSHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHHHC
Confidence            9999999999999999988873

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.91  E-value=0.49  Score=46.70  Aligned_cols=140  Identities=14%  Similarity=0.069  Sum_probs=106.3

Q ss_pred             CHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCch
Q 025930           30 GLTSLLMLLGS---SEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDK  104 (246)
Q Consensus        30 ~i~~Li~ll~~---~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~  104 (246)
                      ..|-++..++.   ..||.+|..|.-+|+.+..- .+..+     ...|.|+.++...+++.++.++.-+++-|+ ..+.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            46777788754   24799999999999998543 32222     257899999997788999999999999988 4443


Q ss_pred             hHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          105 LQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       105 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                      ..+.     .-+.|...|+.+++.+++.|.-+|..|-..             ..+--.|.++.++.++.+++++++..|-
T Consensus       995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn-------------dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen  995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN-------------DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred             ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh-------------hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence            3222     245678888899999999999999998742             1222368899999999999999999988


Q ss_pred             HHHHHhcc
Q 025930          185 LALCHLAQ  192 (246)
Q Consensus       185 ~aL~~La~  192 (246)
                      .....|+.
T Consensus      1057 ~FF~Els~ 1064 (1251)
T KOG0414|consen 1057 SFFKELSS 1064 (1251)
T ss_pred             HHHHHhhh
Confidence            66666654

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.89  E-value=0.43  Score=45.12  Aligned_cols=190  Identities=18%  Similarity=0.119  Sum_probs=122.5

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      .++++.+.+.......-.-.+..++.||+.. +..|..+.+.-+++.+-..+.. +++..+..++..+.||...+....+
T Consensus       542 v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~  620 (748)
T KOG4151|consen  542 VVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTE-ENPALQRAALESIINLLWSPLLYER  620 (748)
T ss_pred             hhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4566666654421111122388889999765 6778788887788877777666 5788999999999999987777655


Q ss_pred             -HHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhH-HHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930          109 -LRG-EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRS-LLIDDGALPWIVQNSNNEASPIRRHIEL  185 (246)
Q Consensus       109 -l~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~v~~~a~~  185 (246)
                       +++ ....+.....+...++.....+++++..+..-        +...+. ...-......++.++.+++++++...+.
T Consensus       621 si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv--------~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~  692 (748)
T KOG4151|consen  621 SIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV--------VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV  692 (748)
T ss_pred             HhhccccCchHHHHHHHhhhhHHhhhccccccchhhc--------chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence             445 34667666666655555666666666644321        112222 2333456788999999999999999999


Q ss_pred             HHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          186 ALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       186 aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      .+.|+.. ..+....+......+.+..+-+. .....++.+...|
T Consensus       693 ~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~-~~a~~~~~~~~~l  736 (748)
T KOG4151|consen  693 IILNLFEALFEIAEKIFETEVMELLSGLQKL-NRAPKREDAAPCL  736 (748)
T ss_pred             hhhhHHHHHHHHHHHhccchHHHHHHHHHHh-hhhhhhhhhhhHH
Confidence            9999765 44555556555555555555442 3333444444444

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.87  E-value=0.051  Score=29.41  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAM   59 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~   59 (246)
                      +|.++++++++ ++.+|..|+.+|++++.
T Consensus         2 lp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            78999999986 89999999999999865

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.76  E-value=0.92  Score=42.67  Aligned_cols=111  Identities=13%  Similarity=0.068  Sum_probs=79.8

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          113 GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       113 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      |.+..+++...+++..++..++..++-+.-+         ......-+-++....|..-+.+..|.||..|+.||+.+-.
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~---------~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~  155 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDE---------NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG  155 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhcc---------ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence            4555666666688899999999999988831         1112222224566777777788899999999999999975


Q ss_pred             CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHH
Q 025930          193 HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQ  236 (246)
Q Consensus       193 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~  236 (246)
                      ++.+-    +...+-.+..+++.++.+++|.+|.-.+...+++.
T Consensus       156 d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTl  195 (892)
T KOG2025|consen  156 DPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTL  195 (892)
T ss_pred             CCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccc
Confidence            33221    12356678889999899999999998887655543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.60  E-value=0.86  Score=37.80  Aligned_cols=172  Identities=13%  Similarity=0.124  Sum_probs=107.6

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHH
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSE----DETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~----~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll   80 (246)
                      +.++++.-.|.+++.|..++++.+.--|-..|+...    -+.++-.+.++++.+.+.  .+.-..+.+.+.+|..+..+
T Consensus        69 naLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m  148 (262)
T PF04078_consen   69 NALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM  148 (262)
T ss_dssp             HHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence            567777778999999999999998444444443321    144666689999999875  45556777889999999999


Q ss_pred             hcCCChHHHHHHHHHHHHhhCCchhHHHHHhc--------CCHHHHHH-HhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930           81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGE--------GGIKALLG-MVRCGHPDVLAQVARGIANFAKCESRASTQG  151 (246)
Q Consensus        81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~--------g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  151 (246)
                      ..+ ++-.+..|...+..+-.++..-..+.+.        .++..++. +...+++.+.+.+++....|+         +
T Consensus       149 e~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs---------d  218 (262)
T PF04078_consen  149 EFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS---------D  218 (262)
T ss_dssp             HHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT---------T
T ss_pred             Hhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc---------c
Confidence            985 4666667888888777666554443211        12233333 234678899999999999999         5


Q ss_pred             ChhhhHHHHhCCChHHHHH-----cccCCChhHHHHHHHHHHHh
Q 025930          152 TKTGRSLLIDDGALPWIVQ-----NSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       152 ~~~~~~~l~~~g~i~~Lv~-----ll~~~~~~v~~~a~~aL~~L  190 (246)
                      ++..|+++.+  .+|..+.     -+-.+|+.++.--...+.|+
T Consensus       219 nprar~aL~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  219 NPRAREALRQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             STTHHHHHHH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            5677877774  3443211     11123666665544444443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.59  E-value=0.89  Score=38.87  Aligned_cols=186  Identities=13%  Similarity=0.061  Sum_probs=124.4

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHhcCc-HHHHHHHHhcC-CChHHHHHHHHHHHHhhCCchhHHHHHh-cCCHHHHH
Q 025930           43 DETIHRVAAGAIANLAMNETNQELIMTQGG-IGLLSTTAANA-EDPQTLRMVAGAIANLCGNDKLQLKLRG-EGGIKALL  119 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~-i~~L~~ll~~~-~~~~~~~~a~~aL~~L~~~~~~~~~l~~-~g~i~~L~  119 (246)
                      ++-.+-.|+.++.++..+.+.|..+-..+. -..++++++.. .+.+++=+.+-.++-|+-++.+.+-+-. .+.+.-|+
T Consensus       162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            555677799999999999999987765443 33666777642 3467777888888988888887754432 23566667


Q ss_pred             HHhcCC-CHHHHHHHHHHHHHhhcccccccc-------------------------------------------------
Q 025930          120 GMVRCG-HPDVLAQVARGIANFAKCESRAST-------------------------------------------------  149 (246)
Q Consensus       120 ~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~-------------------------------------------------  149 (246)
                      .+.+.. .+.+.+-+++++.|++...++.+.                                                 
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            777643 455777888888888753322222                                                 


Q ss_pred             ----------cCC---------hhhhHHHHhCC--ChHHHHHcccCCChh-HHHHHHHHHHHhcc-CchhHHHHHhCCcH
Q 025930          150 ----------QGT---------KTGRSLLIDDG--ALPWIVQNSNNEASP-IRRHIELALCHLAQ-HEVNAKDMISGGAL  206 (246)
Q Consensus       150 ----------~~~---------~~~~~~l~~~g--~i~~Lv~ll~~~~~~-v~~~a~~aL~~La~-~~~~~~~i~~~g~i  206 (246)
                                .++         ..+-+.+.+.+  .+..|..+++..++. .-..||.-|..+.. .|+.+..+...|+-
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k  401 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK  401 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence                      000         23344444333  366777777766554 33445666666654 88899999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 025930          207 WELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       207 ~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      ..++.++. .++++++-.|..++
T Consensus       402 ~~im~L~n-h~d~~VkfeAl~a~  423 (432)
T COG5231         402 EIIMNLIN-HDDDDVKFEALQAL  423 (432)
T ss_pred             HHHHHHhc-CCCchhhHHHHHHH
Confidence            99999998 45566676666655

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.48  E-value=1.6  Score=41.08  Aligned_cols=106  Identities=16%  Similarity=0.085  Sum_probs=70.1

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      -+|.+..++.-..+. +-.++..++..|..+.........-+-.+....+..-+.+ ..+.++.+|..+|+.+=.++..-
T Consensus        83 V~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D-rep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   83 VAGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD-REPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhcCCCCC
Confidence            356677777777765 6778888899988887753333333333445555555555 34789999999999987433221


Q ss_pred             HHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhh
Q 025930          107 LKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFA  141 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~  141 (246)
                          +..++..+..+++ .++++++..|+   .|++
T Consensus       161 ----e~~v~n~l~~liqnDpS~EVRRaaL---snI~  189 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQNDPSDEVRRAAL---SNIS  189 (892)
T ss_pred             ----cccHHHHHHHHHhcCCcHHHHHHHH---Hhhc
Confidence                2245677888887 56788888776   5555

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.47  E-value=0.45  Score=44.38  Aligned_cols=131  Identities=17%  Similarity=0.181  Sum_probs=87.0

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      .+|+++++++++ .|.++.+|..++-..-.... +..+.. ...++.+..+..+ ++++++++.|.++..|.....-+-.
T Consensus       175 mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~-qal~~~iD~Fle~lFalanD-~~~eVRk~vC~alv~Llevr~dkl~  251 (885)
T KOG2023|consen  175 MIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQT-QALYVHIDKFLEILFALAND-EDPEVRKNVCRALVFLLEVRPDKLV  251 (885)
T ss_pred             hHHHHHHHHhCC-ChhHHHHHHhhhhheeecCc-HHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhcHHhcc
Confidence            489999999997 88899998888876655432 222222 2356677777765 6899999999999988732211111


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--CCChHHHHHcc
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--DGALPWIVQNS  172 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~g~i~~Lv~ll  172 (246)
                      =.-.+++.-++..-...++++.-.|+.....++..         +..++.+..  ...+|.|++-+
T Consensus       252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeq---------pi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ---------PICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC---------cCcHHHHHHHHHHHHHHHHccC
Confidence            11224566677777788889999999888888853         233443332  24677776644

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.37  E-value=1.7  Score=41.15  Aligned_cols=192  Identities=16%  Similarity=0.109  Sum_probs=122.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--Cc---hh
Q 025930           32 TSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--ND---KL  105 (246)
Q Consensus        32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~---~~  105 (246)
                      +...+.-++ .|..++..|..+|..+..- .+.-..-.+...+.+-+.-+++ +++++..++...=+++|.  .+   +.
T Consensus       220 qvvcEatq~-~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-~~deValQaiEFWsticeEEiD~~~e~  297 (859)
T KOG1241|consen  220 QVVCEATQS-PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-DNDEVALQAIEFWSTICEEEIDLAIEY  297 (859)
T ss_pred             eeeeecccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444 4788888899999998544 4444444444456666677776 678888888888888871  11   11


Q ss_pred             HHH-----------HH---hcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930          106 QLK-----------LR---GEGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA  164 (246)
Q Consensus       106 ~~~-----------l~---~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~  164 (246)
                      .+.           +.   -.+++|.|+.+|-.       ++..+.+.|-..|.-++.           -.++.|+. -+
T Consensus       298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-----------~~~D~Iv~-~V  365 (859)
T KOG1241|consen  298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-----------CVGDDIVP-HV  365 (859)
T ss_pred             HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-----------Hhcccchh-hh
Confidence            111           11   12567888888853       123344555444544442           22223333 57


Q ss_pred             hHHHHHcccCCChhHHHHHHHHHHHhccCch-hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHH
Q 025930          165 LPWIVQNSNNEASPIRRHIELALCHLAQHEV-NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAE  238 (246)
Q Consensus       165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e  238 (246)
                      +|++-+-+++++=+-|+.++.+++..-..++ .+-.=+..++++.++.++.+ +.--++..+.+++.-+-++-+|
T Consensus       366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D-~sl~VkdTaAwtlgrI~d~l~e  439 (859)
T KOG1241|consen  366 LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD-PSLWVKDTAAWTLGRIADFLPE  439 (859)
T ss_pred             HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC-chhhhcchHHHHHHHHHhhchh
Confidence            8888888988999999999999999877444 34444556799999999994 4445568888888765554443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.31  E-value=0.7  Score=43.58  Aligned_cols=91  Identities=18%  Similarity=0.191  Sum_probs=67.1

Q ss_pred             ChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930           85 DPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA  164 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~  164 (246)
                      ++.++..|.+.+..+ ..+.....+     ..++.+.++++++.+++.++..+.++=           +...+.....|.
T Consensus        99 np~iR~lAlrtm~~l-~v~~i~ey~-----~~Pl~~~l~d~~~yvRktaa~~vakl~-----------~~~~~~~~~~gl  161 (734)
T KOG1061|consen   99 NPLIRALALRTMGCL-RVDKITEYL-----CDPLLKCLKDDDPYVRKTAAVCVAKLF-----------DIDPDLVEDSGL  161 (734)
T ss_pred             CHHHHHHHhhceeeE-eehHHHHHH-----HHHHHHhccCCChhHHHHHHHHHHHhh-----------cCChhhccccch
Confidence            455554444443322 333333333     578999999999999999998888776           244555667899


Q ss_pred             hHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          165 LPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      ++.|.+++.+.+|.|.-+|+.+|..+..
T Consensus       162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e  189 (734)
T KOG1061|consen  162 VDALKDLLSDSNPMVVANALAALSEIHE  189 (734)
T ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999965

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.24  E-value=1  Score=40.56  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=79.4

Q ss_pred             ccccHHHHHHhCCHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCcchH--HHHHhcCcHHHHHHHHhcCCChH--
Q 025930           18 AQSNQEKIVEAGGLTSLLMLLGSSE------DETIHRVAAGAIANLAMNETNQ--ELIMTQGGIGLLSTTAANAEDPQ--   87 (246)
Q Consensus        18 ~~~~~~~i~~~g~i~~Li~ll~~~~------~~~~~~~a~~~L~~la~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~--   87 (246)
                      .-.||+.+-++=|.+-+=.+|.+.+      |..++..+..+|.-.+.+++..  +.++  +.||.|+.+++...|++  
T Consensus        45 ~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e  122 (698)
T KOG2611|consen   45 VALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYE  122 (698)
T ss_pred             hhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchh
Confidence            3457778889988888888887642      2224445788888888886543  2333  36999999998766655  


Q ss_pred             ----HHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc
Q 025930           88 ----TLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR  123 (246)
Q Consensus        88 ----~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~  123 (246)
                          +.+.+..+|...++.+.....++..|+++.+..+-.
T Consensus       123 ~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen  123 DNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             hhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence                788899999999988999999999999999986554

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.01  E-value=0.61  Score=44.03  Aligned_cols=148  Identities=14%  Similarity=0.112  Sum_probs=91.1

Q ss_pred             hCCHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 025930           28 AGGLTSLLMLLGSSE------DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG  101 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~------~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~  101 (246)
                      .+.+|.|+++|...+      +....+.|..+|.-++..-  +..|+. ..+|.+-+-+++ +|-.-++.++.|....-.
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~-~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~  393 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVP-HVLPFIEENIQN-PDWRNREAAVMAFGSILE  393 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchh-hhHHHHHHhcCC-cchhhhhHHHHHHHhhhc
Confidence            477899999997731      2224455555555443321  111221 223333345555 455566677777776653


Q ss_pred             -CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC----CChHHHHHcccCCC
Q 025930          102 -NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD----GALPWIVQNSNNEA  176 (246)
Q Consensus       102 -~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~----g~i~~Lv~ll~~~~  176 (246)
                       .+..+..=+..+++|.++.++..++-.++..++++|..++..           .-+.....    +.++.++.=++ +.
T Consensus       394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~-----------l~e~~~n~~~l~~~l~~l~~gL~-De  461 (859)
T KOG1241|consen  394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF-----------LPEAIINQELLQSKLSALLEGLN-DE  461 (859)
T ss_pred             CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh-----------chhhcccHhhhhHHHHHHHHHhh-hC
Confidence             334444434557899999999988888999999999998842           11222222    33444444443 58


Q ss_pred             hhHHHHHHHHHHHhc
Q 025930          177 SPIRRHIELALCHLA  191 (246)
Q Consensus       177 ~~v~~~a~~aL~~La  191 (246)
                      |.+-.++||++.+|+
T Consensus       462 Prva~N~CWAf~~La  476 (859)
T KOG1241|consen  462 PRVASNVCWAFISLA  476 (859)
T ss_pred             chHHHHHHHHHHHHH
Confidence            899999999999997

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.99  E-value=0.34  Score=45.02  Aligned_cols=183  Identities=18%  Similarity=0.156  Sum_probs=99.1

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC------Cchh-H
Q 025930           34 LLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG------NDKL-Q  106 (246)
Q Consensus        34 Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~------~~~~-~  106 (246)
                      |+.+.... |..++.+|+..|..|...-..-...     ....++.+++ ++..+++.|..+++-..+      ..++ .
T Consensus       203 l~~~~~~~-D~~Vrt~A~eglL~L~eg~kL~~~~-----Y~~A~~~lsD-~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQ-DFRVRTHAVEGLLALSEGFKLSKAC-----YSRAVKHLSD-DYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCC-CcchHHHHHHHHHhhcccccccHHH-----HHHHHHHhcc-hHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            55555554 5555666666665555432222222     2244556666 467788777655544331      1111 1


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-------------------------------------ccccccc
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-------------------------------------CESRAST  149 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-------------------------------------~~~~~~~  149 (246)
                      .++.+ .+...+.+.+...+..++..|+.+|+.+..                                     ..+++..
T Consensus       276 ~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~  354 (823)
T KOG2259|consen  276 EKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN  354 (823)
T ss_pred             hhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence            12222 234455555555555555555544443321                                     1000000


Q ss_pred             -----cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 025930          150 -----QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRT  223 (246)
Q Consensus       150 -----~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~  223 (246)
                           ..+++.-..++..|+-..+|.-+.++--+||++|+..++.|+. .+.-..     .++..|+.++. ++-+++|.
T Consensus       355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN-DE~~~VRL  428 (823)
T KOG2259|consen  355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN-DEIEVVRL  428 (823)
T ss_pred             ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc-cHHHHHHH
Confidence                 0123444557777888888888887888999999999999987 343321     14566677665 45555666


Q ss_pred             HHHHHHc
Q 025930          224 LAHRTLT  230 (246)
Q Consensus       224 ~A~~~L~  230 (246)
                      -|.-+|.
T Consensus       429 ~ai~aL~  435 (823)
T KOG2259|consen  429 KAIFALT  435 (823)
T ss_pred             HHHHHHH
Confidence            5555554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.91  E-value=1  Score=42.60  Aligned_cols=69  Identities=17%  Similarity=0.091  Sum_probs=46.5

Q ss_pred             HHHHHHH-hcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhcc
Q 025930          115 IKALLGM-VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQ  192 (246)
Q Consensus       115 i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~  192 (246)
                      |+.|+.. .++.+.++++.|..+|.-.+.        +++         ...|..|.+|... ++.||.-++.+|+.-|.
T Consensus       556 ir~lLh~aVsD~nDDVrRaAVialGFVl~--------~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCA  618 (929)
T KOG2062|consen  556 IRRLLHVAVSDVNDDVRRAAVIALGFVLF--------RDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACA  618 (929)
T ss_pred             HHHhhcccccccchHHHHHHHHHheeeEe--------cCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence            4444444 234567777777777776654        223         3467778877554 89999999999999888


Q ss_pred             CchhHHHH
Q 025930          193 HEVNAKDM  200 (246)
Q Consensus       193 ~~~~~~~i  200 (246)
                      ...+++.+
T Consensus       619 GtG~~eAi  626 (929)
T KOG2062|consen  619 GTGLKEAI  626 (929)
T ss_pred             CCCcHHHH
Confidence            66665443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=93.90  E-value=1.1  Score=43.44  Aligned_cols=157  Identities=12%  Similarity=0.091  Sum_probs=85.6

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHh-cCcHH--------HHHHHHhcC-CC--hHHHHHHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMT-QGGIG--------LLSTTAANA-ED--PQTLRMVAG   94 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~-~g~i~--------~L~~ll~~~-~~--~~~~~~a~~   94 (246)
                      +.-..+++.++++ .++++..|+.+|++++.+.  ..-..+.+ ...=|        .|...+.+. .|  ....+..-.
T Consensus       857 e~~~~iieaf~sp-~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~  935 (1233)
T KOG1824|consen  857 ELKDTIIEAFNSP-SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWA  935 (1233)
T ss_pred             hhHHHHHHHcCCC-hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            4445678999986 8889999999999998752  21111111 00000        111111111 11  011111222


Q ss_pred             HHHHhh-CCchhHHHH-Hhc----------CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           95 AIANLC-GNDKLQLKL-RGE----------GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        95 aL~~L~-~~~~~~~~l-~~~----------g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      .|++=| ..++..+-+ .++          ..+|.|-..++++.+..+..+..++.-.-..        .+.--+.+. .
T Consensus       936 lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd--------~p~~id~~l-k 1006 (1233)
T KOG1824|consen  936 LLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISD--------QPQPIDPLL-K 1006 (1233)
T ss_pred             HHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecC--------CCCccCHHH-H
Confidence            222223 122221111 111          1356666677788788777777777643321        122222222 2


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhccCch
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEV  195 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~  195 (246)
                      ..+..+..++++++.+||..|+.++-.-++|..
T Consensus      1007 ~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1007 QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH
Confidence            357788889999999999999999999988654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=93.88  E-value=3.8  Score=35.18  Aligned_cols=189  Identities=13%  Similarity=0.093  Sum_probs=106.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhc--CcHHHHHHHHhcCCChHHHHHHHHHHHHhhC---Cchh
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQ--GGIGLLSTTAANAEDPQTLRMVAGAIANLCG---NDKL  105 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~--g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~---~~~~  105 (246)
                      +...|..+... ....|..+...|.++-......+.+.+.  -.+..+...++++.. +-+..|+.++.-++.   ..+.
T Consensus        45 L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence            45556666654 5677888999998886553333333221  124566666776543 334467777777762   2344


Q ss_pred             HHHHHhcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH--HHHHccc--------
Q 025930          106 QLKLRGEGGIKALLGMVRCGH--PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP--WIVQNSN--------  173 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~--~Lv~ll~--------  173 (246)
                      ...+++ ...|+|...+..++  +..+..++.+|+-+++.-     -.+.+......  ..+.  +.....+        
T Consensus       123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~-----~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~  194 (309)
T PF05004_consen  123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVG-----GSDEEETEELM--ESLESIFLLSILKSDGNAPVV  194 (309)
T ss_pred             HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh-----cCChhHHHHHH--HHHHHHHHHHhcCcCCCcccc
Confidence            455554 35778888887543  445556666666655410     01122222111  1222  1111121        


Q ss_pred             --CCChhHHHHHHHHHHHhcc-Cchh-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          174 --NEASPIRRHIELALCHLAQ-HEVN-AKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       174 --~~~~~v~~~a~~aL~~La~-~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                        .+++.+...|+.+-+-|.. -+.. .... -...++.|..++. +++..+|.+|.++|+.
T Consensus       195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~-s~d~~VRiAAGEaiAl  254 (309)
T PF05004_consen  195 AAEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLD-SDDVDVRIAAGEAIAL  254 (309)
T ss_pred             cCCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence              2245788888777666654 3331 2222 2346899999998 5678899999999974

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=93.84  E-value=0.39  Score=45.33  Aligned_cols=135  Identities=17%  Similarity=0.167  Sum_probs=92.2

Q ss_pred             CChHHHHHHHHHHHHhhCCchhH--HH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQ--LK-LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI  160 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~--~~-l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~  160 (246)
                      ..+.++++|+..+..++---..+  .. +...|+  .|...|..+.+++.-..+++++.++.-          .+-..+.
T Consensus       811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nv----------igm~km~  878 (1172)
T KOG0213|consen  811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNV----------IGMTKMT  878 (1172)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHh----------ccccccC
Confidence            45778888888888776221111  22 223343  367777788899999988888887641          0000000


Q ss_pred             --hCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cchh---HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          161 --DDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVN---AKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       161 --~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~---~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                        -.+.+|.|..+|++.+..+++++...++.+|. .++.   |+-|+   .--.|+++++ ..++.+|.+|..++.++.+
T Consensus       879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLk-ahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLK-AHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHH-HHHHHHHHHHHhhhhHHHH
Confidence              14789999999999999999999999999987 3332   33333   3445778887 5678899999988887654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.82  E-value=1.6  Score=41.49  Aligned_cols=118  Identities=8%  Similarity=0.073  Sum_probs=76.8

Q ss_pred             CChHHHHHHHHHHHHhhCC-chhHHHHHhc----------CCH----HHHHHHhcCCCHHHHHHHHHHHHHhhccccccc
Q 025930           84 EDPQTLRMVAGAIANLCGN-DKLQLKLRGE----------GGI----KALLGMVRCGHPDVLAQVARGIANFAKCESRAS  148 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~----------g~i----~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~  148 (246)
                      ++..++.-|+.+|..+-.+ +.|-+.+.-.          .++    ..++++|+++|..+++.|.-...-|...     
T Consensus       306 ~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-----  380 (866)
T KOG1062|consen  306 SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-----  380 (866)
T ss_pred             CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-----
Confidence            4577888899999888744 3333332111          111    2467788888888888888888777742     


Q ss_pred             ccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhH---HHH----------HhCCcHHHHHHHH
Q 025930          149 TQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNA---KDM----------ISGGALWELVRIS  213 (246)
Q Consensus       149 ~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~---~~i----------~~~g~i~~L~~ll  213 (246)
                           .+..     ..+..|+..|...+++.+...+.-+..++.  .|+++   +.|          +....+..+++++
T Consensus       381 -----~Nv~-----~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LI  450 (866)
T KOG1062|consen  381 -----SNVR-----VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLI  450 (866)
T ss_pred             -----ccHH-----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence                 2222     234567777777799999999999999875  55542   111          2455677788888


Q ss_pred             hcC
Q 025930          214 RDC  216 (246)
Q Consensus       214 ~~~  216 (246)
                      .++
T Consensus       451 a~~  453 (866)
T KOG1062|consen  451 ANA  453 (866)
T ss_pred             hcC
Confidence            754

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.73  E-value=1.4  Score=40.75  Aligned_cols=129  Identities=19%  Similarity=0.214  Sum_probs=81.9

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLK  108 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~  108 (246)
                      ...++..-+.  ++..++-|+..+...-.+ ++.++.-     +..++.++.+ +|..++.+|...|-.+| .+++...+
T Consensus        25 y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~k   96 (556)
T PF05918_consen   25 YKEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSK   96 (556)
T ss_dssp             HHHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred             HHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence            3445555553  566788899999999777 7666654     6788899998 68999999999999999 45677666


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc---CCChhHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN---NEASPIRRHIEL  185 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~v~~~a~~  185 (246)
                      +     +++|+.+|.++++.-...+-.+|..|-..+        +        .+.+..|...+.   .+++.+|+.++.
T Consensus        97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d--------~--------k~tL~~lf~~i~~~~~~de~~Re~~lk  155 (556)
T PF05918_consen   97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD--------P--------KGTLTGLFSQIESSKSGDEQVRERALK  155 (556)
T ss_dssp             H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH---------H--------HHHHHHHHHHHH---HS-HHHHHHHHH
T ss_pred             H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC--------c--------HHHHHHHHHHHHhcccCchHHHHHHHH
Confidence            6     678999999888776666666666665321        1        123333333332   456677777776


Q ss_pred             HHH
Q 025930          186 ALC  188 (246)
Q Consensus       186 aL~  188 (246)
                      .|.
T Consensus       156 Fl~  158 (556)
T PF05918_consen  156 FLR  158 (556)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PRK14707 hypothetical protein; Provisional

Probab=93.52  E-value=2.7  Score=44.43  Aligned_cols=195  Identities=16%  Similarity=0.130  Sum_probs=124.3

Q ss_pred             hHHhHhhccccccHHHHHHhCCHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChH
Q 025930            9 ISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGS-SEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQ   87 (246)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~-~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~   87 (246)
                      +.+-..+....+.++.+= .-++...++.|+. ++++.+...|...-..++.+++.+..+- ..|+.-.++-+++=++..
T Consensus       312 ~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~  389 (2710)
T PRK14707        312 IALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTP  389 (2710)
T ss_pred             HHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCch
Confidence            334444555545443332 3334445555544 5455555555555567788887777765 346777778888766777


Q ss_pred             HHHHHHHHHHH-hhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHH-hhcccccccccCChhhhHHHHhCCCh
Q 025930           88 TLRMVAGAIAN-LCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIAN-FAKCESRASTQGTKTGRSLLIDDGAL  165 (246)
Q Consensus        88 ~~~~a~~aL~~-L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~~~~~~~l~~~g~i  165 (246)
                      ....++.+|.. +..+++.++.+--.|+--.|-.+-+=++..+...++..|.. ++         ++.+.++.|--.++.
T Consensus       390 ~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la---------~d~~l~~~~~p~~va  460 (2710)
T PRK14707        390 VCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLA---------HDTELCKALDPINVT  460 (2710)
T ss_pred             HHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHh---------ccHHHHhhcChHHHH
Confidence            77777777744 44777887777666655544444445677777778877775 45         567889888888888


Q ss_pred             HHHHHcccCCChhHHHHHHHHHH-HhccCchhHHHHHhCCcHHHHHHHHh
Q 025930          166 PWIVQNSNNEASPIRRHIELALC-HLAQHEVNAKDMISGGALWELVRISR  214 (246)
Q Consensus       166 ~~Lv~ll~~~~~~v~~~a~~aL~-~La~~~~~~~~i~~~g~i~~L~~ll~  214 (246)
                      ..|-.+.+.++..++..+...|. .|+.+++.++.|--.+....|-.+.+
T Consensus       461 ~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK  510 (2710)
T PRK14707        461 QALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSK  510 (2710)
T ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhc
Confidence            88888888888888876665554 56767666666654444444444444

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.40  E-value=0.74  Score=45.50  Aligned_cols=136  Identities=15%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             cHHHHHHHHhc---CCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhccccc
Q 025930           72 GIGLLSTTAAN---AEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESR  146 (246)
Q Consensus        72 ~i~~L~~ll~~---~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~  146 (246)
                      ..|.+++.++.   ..||+++..|.-||..+. -+.+..    + .-+|.|+..|. ++++-++.++.-+++-|+.+   
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----e-s~l~llftimeksp~p~IRsN~VvalgDlav~---  991 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----E-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR---  991 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----H-HHHHHHHHHHhcCCCceeeecchheccchhhh---
Confidence            45666677743   357999999999999886 333221    1 23688999997 88999999999999988863   


Q ss_pred             ccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 025930          147 ASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAH  226 (246)
Q Consensus       147 ~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~  226 (246)
                           -+..-+     -.-+.|-+.+++.++.+|+.|..+|.+|-.+    ..+.-.|-+..+..++- ++++.++.+|.
T Consensus       992 -----fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~-D~~~~IsdlAk 1056 (1251)
T KOG0414|consen  992 -----FPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLE-DPNAEISDLAK 1056 (1251)
T ss_pred             -----cccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhc-CCcHHHHHHHH
Confidence                 122111     2356788888999999999999999999774    34445788888888887 56677888888


Q ss_pred             HHHc
Q 025930          227 RTLT  230 (246)
Q Consensus       227 ~~L~  230 (246)
                      ...+
T Consensus      1057 ~FF~ 1060 (1251)
T KOG0414|consen 1057 SFFK 1060 (1251)
T ss_pred             HHHH
Confidence            4443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=93.26  E-value=0.61  Score=43.22  Aligned_cols=144  Identities=16%  Similarity=0.121  Sum_probs=93.7

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHhhCCch-h--HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCCh
Q 025930           77 STTAANAEDPQTLRMVAGAIANLCGNDK-L--QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTK  153 (246)
Q Consensus        77 ~~ll~~~~~~~~~~~a~~aL~~L~~~~~-~--~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~  153 (246)
                      +.++++ ..+.+++.|+..+..|+---. +  -+.+...|.  .|..-+....+++.-..+.+++.+.+--      +-+
T Consensus       610 L~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~------~~~  680 (975)
T COG5181         610 LKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVH------RFR  680 (975)
T ss_pred             HHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhh------ccc
Confidence            345555 457788888887777761111 1  122233333  3566667778999998888888876321      111


Q ss_pred             hhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cch---hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          154 TGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEV---NAKDMISGGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       154 ~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~---~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      ..+--  -.|.+|.|..+|++.+..+..+....++.+|. .++   .|+-|+   .--.|+..++ +.++++|..|..++
T Consensus       681 ~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lk-s~nKeiRR~A~~tf  754 (975)
T COG5181         681 SMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLK-SWNKEIRRNATETF  754 (975)
T ss_pred             ccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHH-HhhHHHHHhhhhhh
Confidence            11111  15889999999999999999999988888887 333   233333   3345677777 67788999999998


Q ss_pred             ccChhH
Q 025930          230 TSSPAF  235 (246)
Q Consensus       230 ~~~~~~  235 (246)
                      .++.+.
T Consensus       755 G~Is~a  760 (975)
T COG5181         755 GCISRA  760 (975)
T ss_pred             hhHHhh
Confidence            876543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=93.24  E-value=3.1  Score=40.65  Aligned_cols=121  Identities=11%  Similarity=0.101  Sum_probs=73.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhcc
Q 025930          114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQ  192 (246)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~  192 (246)
                      ....++.-+.++...++++++.+|..++.+       .+.+.-     .+.++.|+.-|.+. .+....--..+|..+|.
T Consensus       175 il~~l~~ql~s~R~aVrKkai~~l~~la~~-------~~~~ly-----~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r  242 (1233)
T KOG1824|consen  175 ILKCLLPQLQSPRLAVRKKAITALGHLASS-------CNRDLY-----VELIEHLLKGLSNRTQMSATRTYIQCLAAICR  242 (1233)
T ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHHHh-------cCHHHH-----HHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            344555555677788999999999999863       122211     13455565555433 44444444566666655


Q ss_pred             CchhHHHHHhCCcHHHHHHHHhc--CCHHHHHHHHHHHHc--------cChhHHHHHHHhhhcC
Q 025930          193 HEVNAKDMISGGALWELVRISRD--CSREDIRTLAHRTLT--------SSPAFQAEMRRLRIDY  246 (246)
Q Consensus       193 ~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~A~~~L~--------~~~~~~~e~~~~~~~~  246 (246)
                      ....|.----...++.+..++..  .++++.|+....++.        .+..+-+|+-++-+.|
T Consensus       243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~y  306 (1233)
T KOG1824|consen  243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSY  306 (1233)
T ss_pred             HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHH
Confidence            43333332335688888998832  567788888777764        3555666766665544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=93.16  E-value=4  Score=37.78  Aligned_cols=186  Identities=8%  Similarity=0.005  Sum_probs=110.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHH--HHHHHHhcCCChHHHHHHHHHHHHhh-------CC
Q 025930           32 TSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIG--LLSTTAANAEDPQTLRMVAGAIANLC-------GN  102 (246)
Q Consensus        32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~--~L~~ll~~~~~~~~~~~a~~aL~~L~-------~~  102 (246)
                      ..++.....+.....+.++..++++.+....-...+...+.+-  +....++.+++..++-.++++|.+-+       .+
T Consensus       136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~  215 (858)
T COG5215         136 EEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCY  215 (858)
T ss_pred             HHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3334444444345567778888988877754444444444433  22345566667778878888887722       22


Q ss_pred             chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHH
Q 025930          103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRH  182 (246)
Q Consensus       103 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~  182 (246)
                      ++.+..+     +....+.-..++.+++..+.+.|+-+..-        .-++-+...+.-......+.+++.++++...
T Consensus       216 E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~L--------yY~fm~~ymE~aL~alt~~~mks~nd~va~q  282 (858)
T COG5215         216 EEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMML--------YYKFMQSYMENALAALTGRFMKSQNDEVAIQ  282 (858)
T ss_pred             hhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence            3333333     44555666788999999999999977641        1133334444444555677889999999999


Q ss_pred             HHHHHHHhccCc-hhHHHHH----------------hCCcHHHHHHHHhc------CCHHHHHHHHHHHHc
Q 025930          183 IELALCHLAQHE-VNAKDMI----------------SGGALWELVRISRD------CSREDIRTLAHRTLT  230 (246)
Q Consensus       183 a~~aL~~La~~~-~~~~~i~----------------~~g~i~~L~~ll~~------~~~~~~~~~A~~~L~  230 (246)
                      +...-..+|..+ +..-.+.                -+..+|.|+.++..      +++.....+|..+|-
T Consensus       283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq  353 (858)
T COG5215         283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ  353 (858)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH
Confidence            887665555411 1111111                12367888888854      234445566666663

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.83  E-value=0.93  Score=43.33  Aligned_cols=161  Identities=17%  Similarity=0.155  Sum_probs=103.3

Q ss_pred             ccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHH--HHHHHHhcCCChHHHHHHH
Q 025930           16 IRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIG--LLSTTAANAEDPQTLRMVA   93 (246)
Q Consensus        16 ~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~--~L~~ll~~~~~~~~~~~a~   93 (246)
                      -.+++++..+++.||+..+...++..+....+..+.+.+.|++...+.+........+.  .+-.++.+.++.+.--.++
T Consensus       500 ~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~  579 (699)
T KOG3665|consen  500 DENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAA  579 (699)
T ss_pred             cCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHH
Confidence            34678899999999999999999988777788889999999987765554443322233  4434555544435555777


Q ss_pred             HHHHHhhCCch-h---------HHHH--------------HhcCCHHH-HHHHhc-CCCHHHHHHHHHHHHHhhcccccc
Q 025930           94 GAIANLCGNDK-L---------QLKL--------------RGEGGIKA-LLGMVR-CGHPDVLAQVARGIANFAKCESRA  147 (246)
Q Consensus        94 ~aL~~L~~~~~-~---------~~~l--------------~~~g~i~~-L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~  147 (246)
                      +.|+.+..+.+ .         .+.+              .....+.+ ...+++ +..++.+--|..++.++..     
T Consensus       580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~-----  654 (699)
T KOG3665|consen  580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLE-----  654 (699)
T ss_pred             HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHH-----
Confidence            88877764321 1         1111              11122233 444454 4566777888889999884     


Q ss_pred             cccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHH
Q 025930          148 STQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIE  184 (246)
Q Consensus       148 ~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~  184 (246)
                         .++++...+.+.|+++.+..+-... ...++..+.
T Consensus       655 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (699)
T KOG3665|consen  655 ---QNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAV  689 (699)
T ss_pred             ---cChhhhhhhHhccchhhhhhcchhHHHHHHHHHHH
Confidence               4467888888899988887655332 333444433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.79  E-value=3.1  Score=39.39  Aligned_cols=127  Identities=15%  Similarity=0.069  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHHHhc-CCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHH
Q 025930           42 EDETIHRVAAGAIANLA-MNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKAL  118 (246)
Q Consensus        42 ~~~~~~~~a~~~L~~la-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L  118 (246)
                      .|+.++..|.-.|..+. ...+...     ...|.++..+.+.++|.++.+|.-.|..+.  -|.. ....     -.-|
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~-~de~-----t~yL  976 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT-ADEH-----THYL  976 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhh-hHHH-----HHHH
Confidence            58899999888888873 3322221     257889998987789999999998888775  2221 1111     2446


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      .+-|...+.++++.|..++.+|-..           ++-  --.|-++.++.++.++|.++...|-..+..+|.
T Consensus       977 yrrL~De~~~V~rtclmti~fLila-----------gq~--KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         977 YRRLGDEDADVRRTCLMTIHFLILA-----------GQL--KVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             HHHhcchhhHHHHHHHHHHHHHHHc-----------cce--eeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            6677788899999999999988642           111  114778999999999999999999988888876

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.71  E-value=3.9  Score=36.96  Aligned_cols=139  Identities=9%  Similarity=-0.011  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC---chhHHHHHhcCCHHHH
Q 025930           43 DETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN---DKLQLKLRGEGGIKAL  118 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~---~~~~~~l~~~g~i~~L  118 (246)
                      +...+.-|++.|+|.+.. ++..+.... -.+..++--+.+..+.++.-.+..+|..+...   ......+.+  +.-.+
T Consensus       271 ~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~--ialrl  347 (533)
T KOG2032|consen  271 SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLN--IALRL  347 (533)
T ss_pred             hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchh--HHHHH
Confidence            334555599999999887 432222221 12333333333435666766677777665532   222222222  33456


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--CCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--DGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      ..+..+.+++++.++..++..|+...       ....+..+.+  .+...+++-.+++.+|.+ ..||+.....|.
T Consensus       348 R~l~~se~~~~R~aa~~Lfg~L~~l~-------g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~  415 (533)
T KOG2032|consen  348 RTLFDSEDDKMRAAAFVLFGALAKLA-------GGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY  415 (533)
T ss_pred             HHHHHhcChhhhhhHHHHHHHHHHHc-------CCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence            66777889999999999888887531       1222332221  123345555666677765 445666555554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.70  E-value=4.8  Score=36.46  Aligned_cols=155  Identities=14%  Similarity=0.110  Sum_probs=96.8

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHhhC----CchhHHHHHhcCCHHHHHHHhcCC-----CHH--HHHHHHHHHHHhhcccc
Q 025930           77 STTAANAEDPQTLRMVAGAIANLCG----NDKLQLKLRGEGGIKALLGMVRCG-----HPD--VLAQVARGIANFAKCES  145 (246)
Q Consensus        77 ~~ll~~~~~~~~~~~a~~aL~~L~~----~~~~~~~l~~~g~i~~L~~ll~~~-----~~~--~~~~a~~~L~nL~~~~~  145 (246)
                      ..+.+...|.+ +-.|+-....++.    +..+++.+.+.=|.+-+-+++.++     .++  .+..++..|..+|..  
T Consensus        17 ~~L~~~k~D~e-~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~--   93 (698)
T KOG2611|consen   17 LKLLKGKRDEE-RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV--   93 (698)
T ss_pred             HHHhcccChHH-HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC--
Confidence            34444433433 3245555566662    345677788888888777887632     333  345666777788843  


Q ss_pred             cccccCChhh--hHHHHhCCChHHHHHcccCC-Chh------HHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcC
Q 025930          146 RASTQGTKTG--RSLLIDDGALPWIVQNSNNE-ASP------IRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDC  216 (246)
Q Consensus       146 ~~~~~~~~~~--~~~l~~~g~i~~Lv~ll~~~-~~~------v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~  216 (246)
                             ++.  .+.++  +.||.|...+..+ +++      +-..+-.+|...+..+.+-..++..|+++.+.++....
T Consensus        94 -------pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~  164 (698)
T KOG2611|consen   94 -------PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP  164 (698)
T ss_pred             -------hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence                   222  22333  4589998888554 333      67778899999999999999999999999998877543


Q ss_pred             CHHHHHHHHHHHHc-----------cChhHHHHHHHhh
Q 025930          217 SREDIRTLAHRTLT-----------SSPAFQAEMRRLR  243 (246)
Q Consensus       217 ~~~~~~~~A~~~L~-----------~~~~~~~e~~~~~  243 (246)
                      +...-.++|...+-           ..+.|-+-++++-
T Consensus       165 ~~~~d~alal~Vlll~~~~~~cw~e~~~~flali~~va  202 (698)
T KOG2611|consen  165 DGSHDMALALKVLLLLVSKLDCWSETIERFLALIAAVA  202 (698)
T ss_pred             CCchhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHH
Confidence            33222344443331           2555655555543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.68  E-value=4.6  Score=38.24  Aligned_cols=121  Identities=11%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ccccccccC
Q 025930           73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-CESRASTQG  151 (246)
Q Consensus        73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~  151 (246)
                      ...++..++.+.|..+++.|+..|..+|..+ |.+.+     |.-|+..|.+-+..+++..+-=++-|+. +..  +..+
T Consensus       370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAt--Dy~W  441 (938)
T KOG1077|consen  370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYAT--DYSW  441 (938)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC--Ccch
Confidence            4466677775678889999999999988544 44444     3446667766666665544433333332 100  0000


Q ss_pred             Chhhh-H------HHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHh
Q 025930          152 TKTGR-S------LLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMIS  202 (246)
Q Consensus       152 ~~~~~-~------~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~  202 (246)
                      ..+.- +      ....+++-..+++..- ++++++.+|+..+...-..+...+.|+.
T Consensus       442 yVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVK  498 (938)
T KOG1077|consen  442 YVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVK  498 (938)
T ss_pred             hHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence            01110 1      1112334445555553 5788888888777766554555555554

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.66  E-value=1.1  Score=36.43  Aligned_cols=144  Identities=13%  Similarity=0.041  Sum_probs=93.6

Q ss_pred             HHHHHHHhcCCcchHHHHHhcCcHHHHHHH---Hh-cCCChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhc
Q 025930           50 AAGAIANLAMNETNQELIMTQGGIGLLSTT---AA-NAEDPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVR  123 (246)
Q Consensus        50 a~~~L~~la~~~~~~~~i~~~g~i~~L~~l---l~-~~~~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~  123 (246)
                      |...|--++.+++.|..+.+...--.+...   .+ +...+-++..+++.+..|.  .++.....+....++|.+++.+.
T Consensus       120 aL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme  199 (315)
T COG5209         120 ALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIME  199 (315)
T ss_pred             HHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence            344444558889999999876542222222   22 2234557888999999998  44566677788889999999998


Q ss_pred             CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--------CCChHHHHH-cccCCChhHHHHHHHHHHHhccCc
Q 025930          124 CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--------DGALPWIVQ-NSNNEASPIRRHIELALCHLAQHE  194 (246)
Q Consensus       124 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--------~g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~  194 (246)
                      .+++--+.-++.++.-+-         +++.+-+-+.+        ..++..++. +...+..++-+.+.++-..||.++
T Consensus       200 ~gSElSktvaifI~qkil---------~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p  270 (315)
T COG5209         200 LGSELSKTVAIFIFQKIL---------GDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP  270 (315)
T ss_pred             hhhHHHHHHHHHHHHHHh---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence            876655555665555444         33444333332        122333332 345567788899999999999988


Q ss_pred             hhHHHHHh
Q 025930          195 VNAKDMIS  202 (246)
Q Consensus       195 ~~~~~i~~  202 (246)
                      ..|..+..
T Consensus       271 ~aR~lL~~  278 (315)
T COG5209         271 HARALLSS  278 (315)
T ss_pred             hHHHHHhc
Confidence            88776653

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=92.43  E-value=1.3  Score=31.20  Aligned_cols=86  Identities=15%  Similarity=0.155  Sum_probs=60.6

Q ss_pred             hHHhHhhccccccHHHHH-HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChH
Q 025930            9 ISVKSEDIRAQSNQEKIV-EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQ   87 (246)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~-~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~   87 (246)
                      -++...+...--....+. +.+.+..|+.|++.+ ++.....+...|..+..++.....+.+.|++..|.++-.. .++.
T Consensus         9 ~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~-~~~~   86 (98)
T PF14726_consen    9 ESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPN-VEPN   86 (98)
T ss_pred             HHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhc-CCHH
Confidence            334444433333344444 678899999999987 4446788899999999999999999999999997777654 4555


Q ss_pred             HHHHHHHHH
Q 025930           88 TLRMVAGAI   96 (246)
Q Consensus        88 ~~~~a~~aL   96 (246)
                      .+...-..+
T Consensus        87 ~~~~id~il   95 (98)
T PF14726_consen   87 LQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHH
Confidence            554443333

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.36  E-value=3.3  Score=39.43  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=52.1

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      +...|+.+..+|.+. ++.+.-.|+..|.+++.++..-+.-     ...++.++-+.+|..+.--...-|..+.  +.+ 
T Consensus       241 ~~~~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~--~~~-  311 (948)
T KOG1058|consen  241 KARYIRCIYNLLSST-SSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELK--ALH-  311 (948)
T ss_pred             hhHHHHHHHHHHhcC-CchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHh--hhh-
Confidence            344577777888775 6666777777777777765322221     2233343333333333222222222222  111 


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK  142 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  142 (246)
                      +.+.+ |.+--++++|++++-++++++.....-|+.
T Consensus       312 ~~il~-~l~mDvLrvLss~dldvr~Ktldi~ldLvs  346 (948)
T KOG1058|consen  312 EKILQ-GLIMDVLRVLSSPDLDVRSKTLDIALDLVS  346 (948)
T ss_pred             HHHHH-HHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence            11111 223334556666666666666666555553

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.34  E-value=7.9  Score=34.60  Aligned_cols=191  Identities=20%  Similarity=0.190  Sum_probs=113.4

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC----ChHHHHHHHHHHHHhh-CCc
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE----DPQTLRMVAGAIANLC-GND  103 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~aL~~L~-~~~  103 (246)
                      ..++.++.+..+.+++..+..++..++.+...-.....+-  +.+..+..-..+..    .....+...|....+. .+.
T Consensus       189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH--HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            3788899988887777778888888888875511111111  12333332221111    2334445556666665 333


Q ss_pred             hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ccccccc----CChhhhHHHHhCCChHHHHHcccCCChh
Q 025930          104 KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKC-ESRASTQ----GTKTGRSLLIDDGALPWIVQNSNNEASP  178 (246)
Q Consensus       104 ~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~~----~~~~~~~~l~~~g~i~~Lv~ll~~~~~~  178 (246)
                      .....+     +..|+.++.+  +++...++..+.-+... ++.....    -..-+|+++... .+|.|++-.++.+.+
T Consensus       267 ~~~~~~-----~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~  338 (415)
T PF12460_consen  267 PLATEL-----LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDE  338 (415)
T ss_pred             chHHHH-----HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChh
Confidence            222222     4557777776  56778888888877742 1111100    012335555533 688888888888888


Q ss_pred             HHHHHHHHHHHhccCchhHHHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          179 IRRHIELALCHLAQHEVNAKDMIS--GGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       179 v~~~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .+..-+.+|.++-.+-.. ..+..  ...+|.|++-+. .++.+++..+..+|..
T Consensus       339 ~k~~yL~ALs~ll~~vP~-~vl~~~l~~LlPLLlqsL~-~~~~~v~~s~L~tL~~  391 (415)
T PF12460_consen  339 IKSNYLTALSHLLKNVPK-SVLLPELPTLLPLLLQSLS-LPDADVLLSSLETLKM  391 (415)
T ss_pred             hHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            888889999999663332 22222  357777888886 4455688888888863

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=92.29  E-value=4.7  Score=39.11  Aligned_cols=154  Identities=15%  Similarity=0.100  Sum_probs=106.8

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      +++.-|+++.... ...+...-..+|...+.-+.......+....|.++.+.. ..+||.+...+-..+..++....|..
T Consensus       530 ~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g  608 (1005)
T KOG2274|consen  530 MILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG  608 (1005)
T ss_pred             HHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence            4566777776655 344555567778877666656666667777888777654 44688888888888888887666665


Q ss_pred             HHHhcCCHHHHHHHhcCCC----HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHH-cccCCChhHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGH----PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQ-NSNNEASPIRRH  182 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~-ll~~~~~~v~~~  182 (246)
                      .+.+ -.+|.++..|..+.    ..+...++..|..+..+       ..+..-+.+... ++|++.+ .++.++..+-.+
T Consensus       609 ~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-------tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~  679 (1005)
T KOG2274|consen  609 PMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-------TPSPLPNLLICY-AFPAVAKITLHSDDHETLQN  679 (1005)
T ss_pred             chHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-------CCCCccHHHHHH-HhHHhHhheeecCChHHHHh
Confidence            5543 46899999998664    66777788777766653       123344445433 5776666 457778888889


Q ss_pred             HHHHHHHhcc
Q 025930          183 IELALCHLAQ  192 (246)
Q Consensus       183 a~~aL~~La~  192 (246)
                      +-.||..+-+
T Consensus       680 ~~EcLra~Is  689 (1005)
T KOG2274|consen  680 ATECLRALIS  689 (1005)
T ss_pred             HHHHHHHHHh
Confidence            9999998855

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.13  E-value=2.8  Score=37.45  Aligned_cols=110  Identities=13%  Similarity=0.103  Sum_probs=73.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chh-------------HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 025930           73 IGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKL-------------QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA  138 (246)
Q Consensus        73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~-------------~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  138 (246)
                      +..|+.++.+   +++...++.++.-+..+ ++.             ++++... .+|.++...+..+.+.+.+-..+|.
T Consensus       273 ~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs  348 (415)
T PF12460_consen  273 LDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHH
Confidence            3345555554   55677778777777644 222             4444432 5778888877766668888888888


Q ss_pred             HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930          139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE  194 (246)
Q Consensus       139 nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~  194 (246)
                      ++..+        .|...-.---...+|.+++-+.-++++++..++.+|..+..+.
T Consensus       349 ~ll~~--------vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  349 HLLKN--------VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHhh--------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            88753        1211111111347899999999999999999999999987743

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.08  E-value=7.1  Score=34.27  Aligned_cols=93  Identities=18%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh-hCCchhHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL-CGNDKLQLKL  109 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L-~~~~~~~~~l  109 (246)
                      +..+++-++++....+++.++--|+.-+.++.-+..+.++|.+..+++.+....+..+...++.++..+ +.+..+-..+
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~  102 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL  102 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence            677777777555566777788888888899999999999999999998886534333444444444444 4555444445


Q ss_pred             HhcCCHHHHHHHhc
Q 025930          110 RGEGGIKALLGMVR  123 (246)
Q Consensus       110 ~~~g~i~~L~~ll~  123 (246)
                      .+.+....++.++.
T Consensus       103 ~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  103 LDRDSLRLLLKLLK  116 (361)
T ss_pred             hchhHHHHHHHHhc
Confidence            56667777788887

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.95  E-value=2.8  Score=38.82  Aligned_cols=94  Identities=18%  Similarity=0.182  Sum_probs=64.3

Q ss_pred             ChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           85 DPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      +.+....|+..+.... ..|+.+...     +..++++..+++..++..|+..|-.+|.        ++++...     .
T Consensus        35 ~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck--------~~~~~v~-----k   96 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCK--------DNPEHVS-----K   96 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG----------T--T-HH-----H
T ss_pred             CHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHH--------hHHHHHh-----H
Confidence            5778888888888776 778887665     5679999999999999999999999995        2334333     3


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhcc-Cchh
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVN  196 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~  196 (246)
                      +...|+++|..+++......-.+|..|-. ++..
T Consensus        97 vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~  130 (556)
T PF05918_consen   97 VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG  130 (556)
T ss_dssp             HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH
Confidence            56789999999988777777777776643 4443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=91.93  E-value=4.6  Score=39.19  Aligned_cols=134  Identities=13%  Similarity=0.188  Sum_probs=83.2

Q ss_pred             HHHHhcCcHHHHHHHHhcCCC----hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc----CCC----HHHHHH
Q 025930           65 ELIMTQGGIGLLSTTAANAED----PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR----CGH----PDVLAQ  132 (246)
Q Consensus        65 ~~i~~~g~i~~L~~ll~~~~~----~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~----~~~----~~~~~~  132 (246)
                      ..+.+.||+..++.++.+..+    .......+..|...+.-+.|++++.+.|+++.|++.+.    .+.    .++.+.
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            345678999999988876333    45666777888888888999999999999999999884    333    455555


Q ss_pred             HHHHHHHhhcccccccccCChhhhHHHHhC-------CChHHHHHcccCC----ChhHHHHHHHHHHHhccCchh-HHHH
Q 025930          133 VARGIANFAKCESRASTQGTKTGRSLLIDD-------GALPWIVQNSNNE----ASPIRRHIELALCHLAQHEVN-AKDM  200 (246)
Q Consensus       133 a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-------g~i~~Lv~ll~~~----~~~v~~~a~~aL~~La~~~~~-~~~i  200 (246)
                      ...++..+....+....   ..........       .-+..|++.+...    ++.+....++.|-.|+..... .+.+
T Consensus       191 LL~IiE~ll~ea~~~~~---~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L  267 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSS---SESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL  267 (802)
T ss_pred             HHHHHHHHHHHHhhhhh---hhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence            55555544421100000   0000000001       1255555555443    688888999999999985443 3444


Q ss_pred             H
Q 025930          201 I  201 (246)
Q Consensus       201 ~  201 (246)
                      +
T Consensus       268 v  268 (802)
T PF13764_consen  268 V  268 (802)
T ss_pred             H
Confidence            3

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.84  E-value=3.6  Score=38.70  Aligned_cols=171  Identities=18%  Similarity=0.141  Sum_probs=94.9

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc---CCChHHHHHHHHHHHHhh----C
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN---AEDPQTLRMVAGAIANLC----G  101 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~---~~~~~~~~~a~~aL~~L~----~  101 (246)
                      +..+.+++.+..-.  ...|...|..+...  ....+.+      ..+..++++   ..++.+...|.-++..+.    .
T Consensus       397 v~~i~~~I~~~~~~--~~ea~~~l~~l~~~~~~Pt~e~l------~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  397 VKFIKDLIKSKKLT--DDEAAQLLASLPFHVRRPTEELL------KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHHH------HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCC--HHHHHHHHHHHHhhcCCCCHHHH------HHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            77777888774222  34456667666443  2233332      233333332   234667767776666665    2


Q ss_pred             Cc------hhHHHHHhcCCHHHHHHHhc----CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHc
Q 025930          102 ND------KLQLKLRGEGGIKALLGMVR----CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN  171 (246)
Q Consensus       102 ~~------~~~~~l~~~g~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~l  171 (246)
                      ..      ......+....++.+...+.    .++.+-+..++.+|+|+..                   ...++.|..+
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------------------~~~i~~l~~~  529 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------------------PESIPVLLPY  529 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------GGGHHHHHTT
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------------------chhhHHHHhH
Confidence            21      11111222234566666554    4567788889999999873                   2468888888


Q ss_pred             ccCC---ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHc-cChhH
Q 025930          172 SNNE---ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTLT-SSPAF  235 (246)
Q Consensus       172 l~~~---~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~-~~~~~  235 (246)
                      +...   ...+|..|+.+|..++......       ..+.|..+..+ ..+.++|-+|...|- +.|..
T Consensus       530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~  591 (618)
T PF01347_consen  530 IEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLILMRCNPSP  591 (618)
T ss_dssp             STTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred             hhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCH
Confidence            8766   6789999999999887633221       45667777765 456677877776664 44543

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.65  E-value=5.2  Score=38.86  Aligned_cols=171  Identities=11%  Similarity=0.107  Sum_probs=106.4

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHH-HhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHH
Q 025930           43 DETIHRVAAGAIANLAMNETNQELI-MTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLG  120 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i-~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~  120 (246)
                      +...+..|+..+........ .... ...|-+..++.+.....+..+...++..|..++ ..... ..=...++.+.+++
T Consensus       266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~lld  343 (815)
T KOG1820|consen  266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPSLLD  343 (815)
T ss_pred             chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcchHHH
Confidence            66666667777777766654 1111 122334455555555456777888888888887 22222 22223356788999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHH
Q 025930          121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAK  198 (246)
Q Consensus       121 ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~  198 (246)
                      .+....+.++.....++--.+..        .+       -....+.+...+++.+|.++..+...+...-.  ++....
T Consensus       344 ~lkekk~~l~d~l~~~~d~~~ns--------~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~  408 (815)
T KOG1820|consen  344 RLKEKKSELRDALLKALDAILNS--------TP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE  408 (815)
T ss_pred             HhhhccHHHHHHHHHHHHHHHhc--------cc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence            99877777776666555544421        01       13467888999999999999998777766643  222222


Q ss_pred             HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          199 DMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       199 ~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .---.+.++.++.... +..+++|.+|.++++-
T Consensus       409 ~~t~~~l~p~~~~~~~-D~~~~VR~Aa~e~~~~  440 (815)
T KOG1820|consen  409 KETVKTLVPHLIKHIN-DTDKDVRKAALEAVAA  440 (815)
T ss_pred             hhhHHHHhHHHhhhcc-CCcHHHHHHHHHHHHH
Confidence            2223456677777776 5667789999988863

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=91.53  E-value=2.2  Score=36.27  Aligned_cols=108  Identities=10%  Similarity=0.144  Sum_probs=73.0

Q ss_pred             HHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ccccccccCChhh
Q 025930           78 TTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-CESRASTQGTKTG  155 (246)
Q Consensus        78 ~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~~~~  155 (246)
                      ..+++ .++.+++.|..+|.-.| .+.+.....     ++.+...+..+++.++..|+.++..+.. +. ..........
T Consensus        34 P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g-~~~~~~~~~~  106 (298)
T PF12719_consen   34 PAVQS-SDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHG-IDIFDSESDN  106 (298)
T ss_pred             HHhcC-CCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-chhccchhcc
Confidence            55666 57899999999999888 444333322     5677888877789999999999998764 21 0000000000


Q ss_pred             hHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          156 RSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       156 ~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      .........+..+...+.+.+++++..++..++.|-.
T Consensus       107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL  143 (298)
T PF12719_consen  107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL  143 (298)
T ss_pred             CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            0111224567788888888899999999999999843

>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]

Probab=91.30  E-value=0.15  Score=45.97  Aligned_cols=177  Identities=16%  Similarity=0.184  Sum_probs=94.5

Q ss_pred             HHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHH
Q 025930           51 AGAIANLAMNETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDV  129 (246)
Q Consensus        51 ~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~  129 (246)
                      +..+..-..++.++..+.+ .++|..+.....+  |..+.+.++.++..++.+.....+++....+.+--..++...+++
T Consensus       226 ~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS--~~hvVek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~~~~I  303 (763)
T KOG4231|consen  226 ASTFVKKMEDEGNRSVIGKDENAIRQLISMIES--DQHVVEKACVALSSLARDVGVTMQLMKCDLMKPTETVLKLSSPDI  303 (763)
T ss_pred             HHHHHHHhhCcccceeecccchhhhhhcccccc--cchhhcccccccccHHHHHHHHHHHHHHHhcCcchhhhhhccccH
Confidence            4456666677777766654 2345555544444  455666677666665544444444444333333322222111111


Q ss_pred             HHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCC-cHHH
Q 025930          130 LAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGG-ALWE  208 (246)
Q Consensus       130 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g-~i~~  208 (246)
                      . .....+..+..        .++..-+.+........+-.+....+++++.++..++.+++.+.++|...+.+- .-..
T Consensus       304 ~-~l~~~v~~~~~--------~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~  374 (763)
T KOG4231|consen  304 I-SLLQVVVTLAF--------VSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLREL  374 (763)
T ss_pred             h-hHHHHHhcCCc--------hhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHH
Confidence            0 11111112221        122333333333345666777777899999999999999999888887655543 3334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccChhHHHHHHH
Q 025930          209 LVRISRDCSREDIRTLAHRTLTSSPAFQAEMRR  241 (246)
Q Consensus       209 L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e~~~  241 (246)
                      +++++.- .....-+.|.++++-..+  .|+-|
T Consensus       375 ~~~~i~~-~~~~~~~~~~~a~~~~~~--~eil~  404 (763)
T KOG4231|consen  375 LMRLIVT-PEPRVNKAAARALAILGE--NEILR  404 (763)
T ss_pred             HHHHhcc-cccccchhhhHHHHHhhh--hHHHH
Confidence            4666653 333445666666665554  35544

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.20  E-value=0.72  Score=37.80  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHhcCcHH-------HHHHHHhcCCChHHHHHHHHHHHHhhCCc-hhHHH-HHhcCCHH
Q 025930           46 IHRVAAGAIANLAMNETNQELIMTQGGIG-------LLSTTAANAEDPQTLRMVAGAIANLCGND-KLQLK-LRGEGGIK  116 (246)
Q Consensus        46 ~~~~a~~~L~~la~~~~~~~~i~~~g~i~-------~L~~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~~-l~~~g~i~  116 (246)
                      -|+.|..+|+.|+..+.|-+.+...+-..       .|+.++...+++-.++.|...|.+|+..+ ..... -.+.+.|.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            47889999999999988887777665544       55566666678889999999999999544 33333 34788999


Q ss_pred             HHHHHhcCC
Q 025930          117 ALLGMVRCG  125 (246)
Q Consensus       117 ~L~~ll~~~  125 (246)
                      .|+.++...
T Consensus       220 ~Li~FiE~a  228 (257)
T PF12031_consen  220 HLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHH
Confidence            999999643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=90.87  E-value=3  Score=32.04  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=27.0

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCc
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANL-AMNE   61 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~~   61 (246)
                      .++.|++.++.+.++.+++++.++||.| |.|+
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP   43 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDP   43 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc
Confidence            4678889999987789999999999999 5554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=90.73  E-value=2.8  Score=39.46  Aligned_cols=138  Identities=17%  Similarity=0.142  Sum_probs=97.8

Q ss_pred             HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc
Q 025930           24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND  103 (246)
Q Consensus        24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~  103 (246)
                      .-+.+.++|.|...++.. +..+|+.++..+..++..-+  ..+++.-.+|.+..+.....+..++.+++-++..+.   
T Consensus       384 e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---  457 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---  457 (700)
T ss_pred             HHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---
Confidence            344566788888888775 88889999999999876633  445555668888887766677788888888888887   


Q ss_pred             hhHHHHHhcCC---HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhH
Q 025930          104 KLQLKLRGEGG---IKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPI  179 (246)
Q Consensus       104 ~~~~~l~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v  179 (246)
                         +.+-...+   +.++.+..+..++.+.-...++..++...        ...+ +.+....++|.++.+...+.-..
T Consensus       458 ---q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~--------~~~g-~ev~~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  458 ---QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALI--------IYSG-VEVMAENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             ---HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh--------cccc-eeeehhhhhhhhhhhhhcccccH
Confidence               22222233   45556666678899998888888888752        2233 44555779999999887775433

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=90.69  E-value=7.9  Score=34.91  Aligned_cols=146  Identities=18%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHH-HHHHHhhCCchhHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVA-GAIANLCGNDKLQLKL  109 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~-~aL~~L~~~~~~~~~l  109 (246)
                      +..+++.|+...++..+..|.++|..++.+...+-.=.-.=+|..+++.-.+. +.++...|. .++.-+++....+.  
T Consensus       331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~~--  407 (516)
T KOG2956|consen  331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQC--  407 (516)
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCchhH--
Confidence            34566666665566667777777777766643331111011233444444443 333333333 33444443322222  


Q ss_pred             HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHH
Q 025930          110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCH  189 (246)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~  189 (246)
                           |..+..++...|......++..+.-++..       -+.+.---++ ....|.+++-..+....||+.|+.||..
T Consensus       408 -----I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~-------l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVa  474 (516)
T KOG2956|consen  408 -----IVNISPLILTADEPRAVAVIKMLTKLFER-------LSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVA  474 (516)
T ss_pred             -----HHHHhhHHhcCcchHHHHHHHHHHHHHhh-------cCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence                 22233333334444444444455555531       0011111112 3578999999999999999999999987


Q ss_pred             hcc
Q 025930          190 LAQ  192 (246)
Q Consensus       190 La~  192 (246)
                      +-.
T Consensus       475 mv~  477 (516)
T KOG2956|consen  475 MVN  477 (516)
T ss_pred             HHH
Confidence            743

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=90.65  E-value=2.4  Score=41.05  Aligned_cols=185  Identities=15%  Similarity=0.085  Sum_probs=114.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcc---hHH------HHHh----cCcHHHHHHHHhcCCChHHHHHHHHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNET---NQE------LIMT----QGGIGLLSTTAANAEDPQTLRMVAGAIA   97 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~---~~~------~i~~----~g~i~~L~~ll~~~~~~~~~~~a~~aL~   97 (246)
                      -..|+.+|+.+   .+-..++.++.-+..|.+   +|.      .+.+    ...+|.|+..... .+...+-+-..+|.
T Consensus       817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t-~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFET-APGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhcc-CCccchhHHHHHHH
Confidence            45677777653   334445555555555521   111      1222    2456777766663 33445556677888


Q ss_pred             HhhCCchhHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCC
Q 025930           98 NLCGNDKLQLKLRG-EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA  176 (246)
Q Consensus        98 ~L~~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~  176 (246)
                      +.-.+...+..+=+ ....|.|+..|+.+|..++..+..++.-+....        +.....- -.-.+|.+..+-.+++
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~--------~tL~t~~-~~Tlvp~lLsls~~~~  963 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES--------ETLQTEH-LSTLVPYLLSLSSDND  963 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc--------cccchHH-HhHHHHHHHhcCCCCC
Confidence            77655433333223 246888899999999999999998888765310        1111111 1246888888887775


Q ss_pred             ---hhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          177 ---SPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       177 ---~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                         ..+|+.|+.+|..|.. -|-..-.-.+...++.|+..+. +..+.+|+.|.++-
T Consensus       964 n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld-DkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  964 NNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD-DKKRLVRKEAVDTR 1019 (1030)
T ss_pred             cchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC-cHHHHHHHHHHHHh
Confidence               6799999999999987 4444333344556777888886 56667778777653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=90.62  E-value=1  Score=43.51  Aligned_cols=140  Identities=15%  Similarity=0.158  Sum_probs=97.5

Q ss_pred             hHHHHHhcCcHHHHHHHHhcCC-------ChHHHHHHHHHHHHhhCCchhHHHHHhc--------CCHHHHHHHhc----
Q 025930           63 NQELIMTQGGIGLLSTTAANAE-------DPQTLRMVAGAIANLCGNDKLQLKLRGE--------GGIKALLGMVR----  123 (246)
Q Consensus        63 ~~~~i~~~g~i~~L~~ll~~~~-------~~~~~~~a~~aL~~L~~~~~~~~~l~~~--------g~i~~L~~ll~----  123 (246)
                      ..+.+.+.+++..++++..-..       -.+....|++.|.-+..-|..+..+...        .|+.+++....    
T Consensus       593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~  672 (1516)
T KOG1832|consen  593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS  672 (1516)
T ss_pred             HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence            4467888899998888876422       1345668888888777888888776432        25555555442    


Q ss_pred             CCCHHHHHHHHHHHHHhhccc--ccccc------------------cCC-------hhhhHHHHhCCChHHHHHcccCC-
Q 025930          124 CGHPDVLAQVARGIANFAKCE--SRAST------------------QGT-------KTGRSLLIDDGALPWIVQNSNNE-  175 (246)
Q Consensus       124 ~~~~~~~~~a~~~L~nL~~~~--~~~~~------------------~~~-------~~~~~~l~~~g~i~~Lv~ll~~~-  175 (246)
                      -.++++++.|++++-|+..-+  +.++.                  +++       ......+..+++|..|+.|++-. 
T Consensus       673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~  752 (1516)
T KOG1832|consen  673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN  752 (1516)
T ss_pred             ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence            238999999999999965422  11111                  011       22345566788999999999655 


Q ss_pred             ----ChhHHHHHHHHHHHhccCchhHHHHHh
Q 025930          176 ----ASPIRRHIELALCHLAQHEVNAKDMIS  202 (246)
Q Consensus       176 ----~~~v~~~a~~aL~~La~~~~~~~~i~~  202 (246)
                          -..+|..|+.+|.-|+.++..|+.+..
T Consensus       753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltK  783 (1516)
T KOG1832|consen  753 PPTTADCIRALACRVLLGLARDDTVRQILTK  783 (1516)
T ss_pred             CCCcHHHHHHHHHHHHhccccCcHHHHHHHh
Confidence                346899999999999999999877753

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.37  E-value=5.9  Score=38.31  Aligned_cols=172  Identities=13%  Similarity=0.084  Sum_probs=105.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHh
Q 025930           32 TSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRG  111 (246)
Q Consensus        32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~  111 (246)
                      +.-+..+.++ .+.++-.+...|..+....+....+...+.+.+.++.+++ +|.-+.-+|...+..||.-       ..
T Consensus       730 qeai~sl~d~-qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcev-------y~  800 (982)
T KOG4653|consen  730 QEAISSLHDD-QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEV-------YP  800 (982)
T ss_pred             HHHHHHhcCC-cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHh-------cc
Confidence            3344444443 5667888999999999887777888888899999999998 5677777888877777732       23


Q ss_pred             cCCHHHHHH-HhcC---CCHHHHH-------HHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930          112 EGGIKALLG-MVRC---GHPDVLA-------QVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR  180 (246)
Q Consensus       112 ~g~i~~L~~-ll~~---~~~~~~~-------~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~  180 (246)
                      ..++|.+.+ ....   ..++.+-       +.+.+++.|+.           ..+.     -.+...+...++++...|
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~-----------~y~~-----~Li~tfl~gvrepd~~~R  864 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF-----------KYKA-----VLINTFLSGVREPDHEFR  864 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH-----------HHHH-----HHHHHHHHhcCCchHHHH
Confidence            345666655 2221   1122222       23333333331           1111     123444555565666778


Q ss_pred             HHHHHHHHHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          181 RHIELALCHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       181 ~~a~~aL~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      -.++..+++||.  .-.....+.+  ....++.+.+.++..-.|++|...+.
T Consensus       865 aSS~a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~  914 (982)
T KOG4653|consen  865 ASSLANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLA  914 (982)
T ss_pred             HhHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHH
Confidence            888999999876  2122233333  45566667766777777777776665

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=90.34  E-value=16  Score=34.42  Aligned_cols=122  Identities=10%  Similarity=0.041  Sum_probs=76.8

Q ss_pred             ChHHHHHHHHHHHHhhCCchhHHHHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           85 DPQTLRMVAGAIANLCGNDKLQLKLRGE--GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~~~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      ++..+..+++.|.|+..++.+++.+...  -.+..+...-..++..++...+....|++..           .-+.-.+.
T Consensus       601 ~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~-----------l~~~~~~~  669 (745)
T KOG0301|consen  601 DPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVL-----------LIQDNEQL  669 (745)
T ss_pred             chhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH-----------HHhccccc
Confidence            3555668899999999888888777643  1222222222234456666666666687742           11111123


Q ss_pred             CChHHHHHcc----cCC-ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCC
Q 025930          163 GALPWIVQNS----NNE-ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCS  217 (246)
Q Consensus       163 g~i~~Lv~ll----~~~-~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~  217 (246)
                      +..+.+...+    .+- +-+....++.||.+|+..+.....+.+.-.+..+..-+++..
T Consensus       670 ~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~  729 (745)
T KOG0301|consen  670 EGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAV  729 (745)
T ss_pred             chHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhc
Confidence            4444444333    222 335677788999999998888888888888888888887643

>PRK14707 hypothetical protein; Provisional

Probab=90.20  E-value=13  Score=39.80  Aligned_cols=203  Identities=15%  Similarity=0.072  Sum_probs=120.7

Q ss_pred             hccccccHHHHHHhCCHHHHHHHh-cCCCCHHHHHHHHHHH-HHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHH
Q 025930           15 DIRAQSNQEKIVEAGGLTSLLMLL-GSSEDETIHRVAAGAI-ANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMV   92 (246)
Q Consensus        15 ~~~~~~~~~~i~~~g~i~~Li~ll-~~~~~~~~~~~a~~~L-~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a   92 (246)
                      ++..+..+..+--+| +-..++.| +.++.+.. ..|+..| ..++.+...+..+-. -.+...++-+++-.|..+...|
T Consensus       234 l~~~~~l~~~~~~q~-va~~lN~lsKwp~~~~C-~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd~~vc~~A  310 (2710)
T PRK14707        234 LADESRLRNELKPQE-LGNALNALSKWADTPVC-AAAASALAERLVDDPGLRKALDP-INVTQALNALSKWADLPVCAEA  310 (2710)
T ss_pred             HcCcHHHHHhCChHH-HHHHHHHHhcCCCchHH-HHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHH
Confidence            344444444443344 44444444 44434443 3344444 456666666665543 2345556667766677776666


Q ss_pred             HHHHH-HhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHH-HhhcccccccccCChhhhHHHHhCCChHHHH
Q 025930           93 AGAIA-NLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIA-NFAKCESRASTQGTKTGRSLLIDDGALPWIV  169 (246)
Q Consensus        93 ~~aL~-~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv  169 (246)
                      +.+|. .|..+++..+.+--.++ ..++.-|+ =++..+...++.+|. -|+         ++++.++.+-..|+-..|-
T Consensus       311 a~~la~rl~~d~~l~~~~~~~~~-~~~LNalsKWpd~~~C~~Aa~~LA~rl~---------~d~~l~~~l~~q~~a~~lN  380 (2710)
T PRK14707        311 AIALAERLADDPELCKALNARGL-STALNALSKWPDNPVCAAAVSALAERLV---------ADPELRKDLEPQGVSSVLN  380 (2710)
T ss_pred             HHHHHHHHhccHhhhhccchHHH-HHHHHHhhcCCCchhHHHHHHHHHHHhc---------cCHhhhcccchhHHHHHHh
Confidence            66664 45577777666544444 44555554 345555666666666 566         6688999998888888888


Q ss_pred             HcccCCChhHHHHHHHHHHH-hccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          170 QNSNNEASPIRRHIELALCH-LAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       170 ~ll~~~~~~v~~~a~~aL~~-La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .+.+.++..++..++.+|.. |..+.+.++.+--.|.. .++.-++.=.+...-..|...|+.
T Consensus       381 alsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~va-n~lnalsKWPd~~~C~~aa~~lA~  442 (2710)
T PRK14707        381 ALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVS-NALNALAKWPDLPICGQAVSALAG  442 (2710)
T ss_pred             hhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHH-HHHHHhhcCCcchhHHHHHHHHHH
Confidence            89998888888888877764 46677777777655544 444444333333344555555543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.16  E-value=5.9  Score=30.57  Aligned_cols=109  Identities=15%  Similarity=0.221  Sum_probs=66.7

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCc--HHHHHHHHhcCCChHHHHHHHHHHHHhh----CC
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGG--IGLLSTTAANAEDPQTLRMVAGAIANLC----GN  102 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~--i~~L~~ll~~~~~~~~~~~a~~aL~~L~----~~  102 (246)
                      ..+..+.++|++. ++.-+..++. |.....++...+.+.+.++  +..++.++++.+++.+.+.++.+|..+.    ..
T Consensus        25 ~l~~ri~~LL~s~-~~~~rw~G~~-Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSK-SAYSRWAGLC-LLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCC-ChhhHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3456677888875 5554554444 4444433333455555444  6677888888777788889998888887    45


Q ss_pred             chhHHHHHhc---CCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930          103 DKLQLKLRGE---GGIKALLGMVRCGHPDVLAQVARGIANFA  141 (246)
Q Consensus       103 ~~~~~~l~~~---g~i~~L~~ll~~~~~~~~~~a~~~L~nL~  141 (246)
                      ++..+++.-.   +.++.++.++..  ......++.+|..+-
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll  142 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL  142 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence            6655555422   245555555553  355666777776654

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=90.03  E-value=11  Score=32.68  Aligned_cols=173  Identities=9%  Similarity=0.017  Sum_probs=118.0

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLK  108 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~  108 (246)
                      ++..|+.--.   ++++--.+..+|..+..++...+.+.+...+..+.+.... ++-++...|...+..+- .+......
T Consensus       126 il~~L~~gy~---~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~  201 (335)
T PF08569_consen  126 ILDILLRGYE---NPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAE  201 (335)
T ss_dssp             HHHHHHHGGG---STTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred             HHHHHHHHhc---CccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHH
Confidence            3555555444   3344566788999999999888888888888888888776 57888888998888865 56666555


Q ss_pred             HHhcC---CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh----CCChHHHHHcccCCChhHHH
Q 025930          109 LRGEG---GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID----DGALPWIVQNSNNEASPIRR  181 (246)
Q Consensus       109 l~~~g---~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~----~g~i~~Lv~ll~~~~~~v~~  181 (246)
                      .....   .+...-.++.+++--.+.+++..|+.+-..         +.+...|..    ..-+..++.+|++.+..+|.
T Consensus       202 fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld---------r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~  272 (335)
T PF08569_consen  202 FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD---------RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQF  272 (335)
T ss_dssp             HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS---------GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc---------hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhH
Confidence            55443   355677788899999999999999998743         455444443    23477889999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHh--CCcHHHHHHHHhc
Q 025930          182 HIELALCHLAQHEVNAKDMIS--GGALWELVRISRD  215 (246)
Q Consensus       182 ~a~~aL~~La~~~~~~~~i~~--~g~i~~L~~ll~~  215 (246)
                      .|-.++--...+|..-..+.+  ..--..|++++.+
T Consensus       273 eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~  308 (335)
T PF08569_consen  273 EAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD  308 (335)
T ss_dssp             HHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence            999888777655544333322  1233455555543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.82  E-value=8.8  Score=37.18  Aligned_cols=203  Identities=14%  Similarity=0.052  Sum_probs=117.8

Q ss_pred             hhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCC--
Q 025930            8 TISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAED--   85 (246)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~--   85 (246)
                      ++.++..+....+.+..+-..+.+...++.+++. |+-+--.|+..+..|+.-       .....+|.+.+-..+..+  
T Consensus       747 gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s~k~k~  818 (982)
T KOG4653|consen  747 GLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLSEKKKL  818 (982)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccCC
Confidence            4455556654445556666778888888888874 666555566655555533       122456666664433221  


Q ss_pred             -hHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChh-hhHHHHh
Q 025930           86 -PQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKT-GRSLLID  161 (246)
Q Consensus        86 -~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~-~~~~l~~  161 (246)
                       .+.+-..-.|+.++.  ..+-......  -.+..++...++++..-+..+++.+++||--        ..- +.+.+. 
T Consensus       819 ~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~--------~a~~vsd~~~-  887 (982)
T KOG4653|consen  819 QTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQL--------LAFQVSDFFH-  887 (982)
T ss_pred             CccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH--------HhhhhhHHHH-
Confidence             112222335555554  2222222221  2345566666777777799999999999831        111 111222 


Q ss_pred             CCChHHHHHcccCC-ChhHHHHHHHHHHHhcc--CchhHHHHH---hCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          162 DGALPWIVQNSNNE-ASPIRRHIELALCHLAQ--HEVNAKDMI---SGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       162 ~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~--~~~~~~~i~---~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                       .++..++.+...+ ...+|+.|+..+..+-.  ..+. -.+.   -......+..+.....++..+..|..++..
T Consensus       888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl-Lpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL-LPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh-HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence             2455666666655 67899999999988844  3222 2222   224556677777777888888888877654

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=89.81  E-value=9.1  Score=31.96  Aligned_cols=64  Identities=14%  Similarity=0.184  Sum_probs=39.8

Q ss_pred             HHhCCHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930           26 VEAGGLTSLLMLLGSSE-DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC  100 (246)
Q Consensus        26 ~~~g~i~~Li~ll~~~~-~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~  100 (246)
                      ..+..+|.|+..+...+ .|.++..|+.+|+++. ++.         ..+.+-+..++ +...+.+.+..|+..+-
T Consensus        64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~~d-p~~~v~ETc~lAi~rle  128 (289)
T KOG0567|consen   64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKD-PCKEVRETCELAIKRLE  128 (289)
T ss_pred             ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcC-CccccchHHHHHHHHHH
Confidence            34566899999887753 4666777999999988 432         34444444422 34455555555555553

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.61  E-value=20  Score=34.50  Aligned_cols=104  Identities=14%  Similarity=0.106  Sum_probs=64.6

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQL  107 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~  107 (246)
                      ..|.+-++|++. ++.+++.|+.+...+-.. ++.-+.+     ++....++.+ .|..+...++..+..+| .+++.-.
T Consensus       143 lapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~  215 (866)
T KOG1062|consen  143 LAPEVERLLQHR-DPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCE-KHHGVLIAGLHLITELCKISPDALS  215 (866)
T ss_pred             hhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHH
Confidence            456667777775 888999988888887544 4433333     4455556665 35666666666777777 4455544


Q ss_pred             HHHhcCCHHHHHHHhcC---------------CCHHHHHHHHHHHHHhhc
Q 025930          108 KLRGEGGIKALLGMVRC---------------GHPDVLAQVARGIANFAK  142 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~nL~~  142 (246)
                      .+-+  .++-++..|+.               ++|-++...++.|+-|-.
T Consensus       216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq  263 (866)
T KOG1062|consen  216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ  263 (866)
T ss_pred             HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence            4443  45555555531               266677777777776663

>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain

Probab=89.60  E-value=2.3  Score=30.74  Aligned_cols=71  Identities=11%  Similarity=0.040  Sum_probs=48.9

Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhC---------CcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISG---------GALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~---------g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      +++.|++-|.+.+++|...|..+|.+.|.++...+.++..         -|.+.+.++++.       ..+.+.|....+
T Consensus         9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~-------~~Gf~~L~~~~~   81 (115)
T PF14663_consen    9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLGDIGSPLLLRFLST-------PSGFRYLNEIGY   81 (115)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHHHcCHHHHHHHHcc-------hHHHHHhcchhH
Confidence            4889999999999999999999999999877665555532         234445555531       122345566666


Q ss_pred             HHHHHHH
Q 025930          235 FQAEMRR  241 (246)
Q Consensus       235 ~~~e~~~  241 (246)
                      ...|+++
T Consensus        82 v~~El~~   88 (115)
T PF14663_consen   82 VEKELDK   88 (115)
T ss_pred             HHHHHHH
Confidence            7777654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.45  E-value=25  Score=35.38  Aligned_cols=182  Identities=10%  Similarity=0.054  Sum_probs=93.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHH----HHHhcCCChHHHHHHHHHHHHhh--CCchhH
Q 025930           33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLS----TTAANAEDPQTLRMVAGAIANLC--GNDKLQ  106 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~----~ll~~~~~~~~~~~a~~aL~~L~--~~~~~~  106 (246)
                      .+.....+..+..+|+.+-..|..++..++......+  -+..+.    +-+++ .+.-.+...+.+|..+-  .+.+..
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q--~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~  733 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQ--RIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHC  733 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHH--HHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHH
Confidence            4455555555778899999999999877544433332  233333    33333 23445556667776665  332333


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--ChhHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASPIRRHIE  184 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~v~~~a~  184 (246)
                      .-+..  .|+-++-.++..+...++.+..+|.+++....     ..+++.+.  ....+..++..+..+  .++.+..+.
T Consensus       734 ~~i~k--~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~-----~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as  804 (1176)
T KOG1248|consen  734 DLIPK--LIPEVILSLKEVNVKARRNAFALLVFIGAIQS-----SLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVAS  804 (1176)
T ss_pred             HHHHH--HHHHHHHhcccccHHHHhhHHHHHHHHHHHHh-----hhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHH
Confidence            33322  24444444477788889999988888872100     00111110  011344444444444  333433333


Q ss_pred             --HHHHHhccCchhHHHHHhCCcHHHH----HHHHhcCCHHHHHHHHHHHHc
Q 025930          185 --LALCHLAQHEVNAKDMISGGALWEL----VRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       185 --~aL~~La~~~~~~~~i~~~g~i~~L----~~ll~~~~~~~~~~~A~~~L~  230 (246)
                        .++..+...   -+.+.+.+.+..+    ..++. ++.++++.+|.+.++
T Consensus       805 ~Ivai~~il~e---~~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fik  852 (1176)
T KOG1248|consen  805 DIVAITHILQE---FKNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIK  852 (1176)
T ss_pred             HHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence              344443331   1233333333333    33343 566777888887775

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.32  E-value=1.9  Score=41.77  Aligned_cols=159  Identities=18%  Similarity=0.177  Sum_probs=104.2

Q ss_pred             HHHHHhCCHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcCCcchHHHHHhc--------CcHHHHHHHHh---cCC
Q 025930           23 EKIVEAGGLTSLLMLLGSSEDET-------IHRVAAGAIANLAMNETNQELIMTQ--------GGIGLLSTTAA---NAE   84 (246)
Q Consensus        23 ~~i~~~g~i~~Li~ll~~~~~~~-------~~~~a~~~L~~la~~~~~~~~i~~~--------g~i~~L~~ll~---~~~   84 (246)
                      +.+..-|++..+++++..+.+..       ...+|..+|.-+..-++.+..+...        .|+.+++....   +.-
T Consensus       595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~  674 (1516)
T KOG1832|consen  595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV  674 (1516)
T ss_pred             HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence            46777899999999988754322       3455777777776678788776542        25555554332   223


Q ss_pred             ChHHHHHHHHHHHHhhCCc-hh-----------------------------------HHHHHhcCCHHHHHHHhcCC---
Q 025930           85 DPQTLRMVAGAIANLCGND-KL-----------------------------------QLKLRGEGGIKALLGMVRCG---  125 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~~~~-~~-----------------------------------~~~l~~~g~i~~L~~ll~~~---  125 (246)
                      |++++..|+++|.|+.-.+ ++                                   ...+...+||.+|+++|...   
T Consensus       675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~  754 (1516)
T KOG1832|consen  675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP  754 (1516)
T ss_pred             CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence            7999999999999875222 22                                   12233457899999999743   


Q ss_pred             --CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH--HHHHcccCC--------ChhHHHHHHHHHHHh
Q 025930          126 --HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP--WIVQNSNNE--------ASPIRRHIELALCHL  190 (246)
Q Consensus       126 --~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~--~Lv~ll~~~--------~~~v~~~a~~aL~~L  190 (246)
                        -..++.-|+++|..|+         .++..|+.+.+--.+.  .+-.++..+        +...++.|...|...
T Consensus       755 t~aD~IRalAc~~L~GLa---------R~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~  822 (1516)
T KOG1832|consen  755 TTADCIRALACRVLLGLA---------RDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEA  822 (1516)
T ss_pred             CcHHHHHHHHHHHHhccc---------cCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHH
Confidence              2348899999999999         5578999888765443  333444333        345566666665554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.05  E-value=4.3  Score=39.64  Aligned_cols=157  Identities=11%  Similarity=0.100  Sum_probs=95.0

Q ss_pred             cHHHHHHHHhc-------CCChHHHHHHHHHHHHhh---CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930           72 GIGLLSTTAAN-------AEDPQTLRMVAGAIANLC---GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA  141 (246)
Q Consensus        72 ~i~~L~~ll~~-------~~~~~~~~~a~~aL~~L~---~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~  141 (246)
                      .++.+++++.+       ..++.....|+.++.+++   ....--+-.++.=.+..+...++++---++.+||..+..++
T Consensus       411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~  490 (1010)
T KOG1991|consen  411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFS  490 (1010)
T ss_pred             HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHH
Confidence            45566677762       124566778888888887   12222222334445677777888888889999999999998


Q ss_pred             cccccccccCChhhhHHHHhCCChHHHHHccc-CCChhHHHHHHHHHHHhccCchhH-HHHHh--CCcHHHHHHHHhcCC
Q 025930          142 KCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASPIRRHIELALCHLAQHEVNA-KDMIS--GGALWELVRISRDCS  217 (246)
Q Consensus       142 ~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a~~aL~~La~~~~~~-~~i~~--~g~i~~L~~ll~~~~  217 (246)
                      .-          +.+..-.-..+++.-...+. +.+-.|+-.|+.||..+-++.+.. ..+..  -+..+.|+.+.+.-+
T Consensus       491 ~~----------df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E  560 (1010)
T KOG1991|consen  491 SI----------DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE  560 (1010)
T ss_pred             hc----------cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence            42          11111111234455555555 566789999999999997755443 33443  356667777777666


Q ss_pred             HHHHHHHHHHHHccChhHHHHHHH
Q 025930          218 REDIRTLAHRTLTSSPAFQAEMRR  241 (246)
Q Consensus       218 ~~~~~~~A~~~L~~~~~~~~e~~~  241 (246)
                      .+++...-..   ..-+|.+|++-
T Consensus       561 nd~Lt~vme~---iV~~fseElsP  581 (1010)
T KOG1991|consen  561 NDDLTNVMEK---IVCKFSEELSP  581 (1010)
T ss_pred             hhHHHHHHHH---HHHHHHHhhch
Confidence            6655322222   23445555543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=88.89  E-value=16  Score=34.06  Aligned_cols=192  Identities=13%  Similarity=0.095  Sum_probs=113.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC---CchhHH
Q 025930           32 TSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG---NDKLQL  107 (246)
Q Consensus        32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~---~~~~~~  107 (246)
                      +...+.-+. +|..++..|..+|..+..- .+.-....|.-........+++ .+.++..++...-..+|.   +.+.-.
T Consensus       224 qvvceatq~-~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~  301 (858)
T COG5215         224 QVVCEATQG-NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMED  301 (858)
T ss_pred             eeeehhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            344444444 5888999999999988544 3333445554444455566777 567787788877777761   111110


Q ss_pred             --------------HHHhcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChH
Q 025930          108 --------------KLRGEGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALP  166 (246)
Q Consensus       108 --------------~l~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~  166 (246)
                                    +-.-.+++|.|+++|..       ++..+...|...|--++.           -....+. ..++.
T Consensus       302 ~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq-----------~~gd~i~-~pVl~  369 (858)
T COG5215         302 KYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ-----------LKGDKIM-RPVLG  369 (858)
T ss_pred             hhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH-----------HhhhHhH-HHHHH
Confidence                          01123478899999953       233344445444444441           1222233 23666


Q ss_pred             HHHHcccCCChhHHHHHHHHHHHhccCch-hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHH
Q 025930          167 WIVQNSNNEASPIRRHIELALCHLAQHEV-NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAE  238 (246)
Q Consensus       167 ~Lv~ll~~~~~~v~~~a~~aL~~La~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e  238 (246)
                      +.-+-+.+++=.-|+.++.+++..-..+. ....-+-..++|.+...+.+ +.--++..+.+++.-+..+-++
T Consensus       370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D-~~l~vk~ttAwc~g~iad~va~  441 (858)
T COG5215         370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD-SCLWVKSTTAWCFGAIADHVAM  441 (858)
T ss_pred             HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc-ceeehhhHHHHHHHHHHHHHHH
Confidence            77777888888889999999999876332 22222334578888888874 3334455666666655554443

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.83  E-value=1.6  Score=40.88  Aligned_cols=108  Identities=16%  Similarity=0.190  Sum_probs=75.9

Q ss_pred             HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 025930           65 ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKC  143 (246)
Q Consensus        65 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~  143 (246)
                      ..|+..|+...++.=+.+ +--++++.|...++.|+ +.|.....-     +.-|++++..+..+++..|..+|..++..
T Consensus       367 ~siI~sGACGA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  367 ESIIPSGACGALVHGLED-EFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             cccccccccceeeeechH-HHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            445666667777666665 34679999999999998 566665443     56789999988899999999999998842


Q ss_pred             cccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          144 ESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                                    .-+++.-++.+...+.+.++++|+..-..|.+.-.
T Consensus       441 --------------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~  475 (823)
T KOG2259|consen  441 --------------LAIREEQLRQILESLEDRSVDVREALRELLKNARV  475 (823)
T ss_pred             --------------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence                          11223346666677766777777766666555533

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=87.42  E-value=17  Score=33.70  Aligned_cols=131  Identities=14%  Similarity=0.145  Sum_probs=85.5

Q ss_pred             hHhhccccccHHHHHHhCCHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChH
Q 025930           12 KSEDIRAQSNQEKIVEAGGLTSLLMLLGSSED---ETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQ   87 (246)
Q Consensus        12 ~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~---~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~   87 (246)
                      +..++........++...++..|.+++.+++.   ..+...+..++..+..+--.....+...+|.....+.. ...+..
T Consensus       107 l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~~fV~~~a~~V~~~~~~a~  186 (713)
T KOG2999|consen  107 LDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSNDFVVSMASYVNAKREDAN  186 (713)
T ss_pred             HhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeecccHHHHHHHHHHhhhhhccc
Confidence            34556677778899999999999999998754   22333455555555444322333333333333333332 113455


Q ss_pred             HHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930           88 TLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK  142 (246)
Q Consensus        88 ~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  142 (246)
                      +...|+..|-++. .++.....+.+.--+..|+..+...+..+...|...+..|-.
T Consensus       187 ~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  187 TLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             chHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            6778888888887 445566777788889999999998888888887776666653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=87.16  E-value=11  Score=38.10  Aligned_cols=206  Identities=14%  Similarity=0.047  Sum_probs=101.4

Q ss_pred             hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-----cchHHHHHhcCcHHHHHHHH
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-----ETNQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-----~~~~~~i~~~g~i~~L~~ll   80 (246)
                      ++++.++..|+..-+.-.++  .-++|-++.++..+ ...+|-.|..+|..+-..     +.+...+.| =.+|-|-.++
T Consensus       441 ~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~  516 (1431)
T KOG1240|consen  441 LAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLL  516 (1431)
T ss_pred             HHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhh
Confidence            45677788776554433333  67799999999886 777888888888876322     334444433 1344444445


Q ss_pred             hcCCChHHHHHHHHHHHHhh-------------------CCchh-----------HHHHHhcCCHHHHHHHhcCCCHHHH
Q 025930           81 ANAEDPQTLRMVAGAIANLC-------------------GNDKL-----------QLKLRGEGGIKALLGMVRCGHPDVL  130 (246)
Q Consensus        81 ~~~~~~~~~~~a~~aL~~L~-------------------~~~~~-----------~~~l~~~g~i~~L~~ll~~~~~~~~  130 (246)
                      .+.+...++..-+..|..|+                   +++.+           ...+. .++-+....++..+++.++
T Consensus       517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~~~v~sLlsd~~~~Vk  595 (1431)
T KOG1240|consen  517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVEQMVSSLLSDSPPIVK  595 (1431)
T ss_pred             ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHHHHHHHHHcCCchHHH
Confidence            44222223322233333332                   11111           00111 1122233445555555666


Q ss_pred             HHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHH
Q 025930          131 AQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELV  210 (246)
Q Consensus       131 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~  210 (246)
                      ..-+..+.-||..           +-+.=.+.=.++.|...|++.|..+|..=-.-|..+|..-.-|  -.+++.+|.|.
T Consensus       596 r~Lle~i~~LC~F-----------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~  662 (1431)
T KOG1240|consen  596 RALLESIIPLCVF-----------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQ  662 (1431)
T ss_pred             HHHHHHHHHHHHH-----------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHH
Confidence            6666667777741           1111112234667777777666666655555555444311111  12333455555


Q ss_pred             HHHhcCCHHHHHHHHHHHHc
Q 025930          211 RISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       211 ~ll~~~~~~~~~~~A~~~L~  230 (246)
                      +-+.++ ++.+..-|.+++.
T Consensus       663 Q~ltD~-EE~Viv~aL~~ls  681 (1431)
T KOG1240|consen  663 QGLTDG-EEAVIVSALGSLS  681 (1431)
T ss_pred             HhccCc-chhhHHHHHHHHH
Confidence            555532 3333444444443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=86.74  E-value=13  Score=36.83  Aligned_cols=154  Identities=16%  Similarity=0.069  Sum_probs=93.4

Q ss_pred             HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc
Q 025930           24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND  103 (246)
Q Consensus        24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~  103 (246)
                      ..+-++++..|++.+++. |-.++..|++-++.++...+  ..+++ ..+.-.+.++.-.++...--.++-||..|+...
T Consensus       336 ~eivE~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rG  411 (1133)
T KOG1943|consen  336 PEIVEFVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRG  411 (1133)
T ss_pred             HHHHHHHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence            445578899999999986 67788889999999987743  22221 245555565554444555448999999998332


Q ss_pred             hhHHHHHhcCCHHHHHHHhcC--------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHH-HHcccC
Q 025930          104 KLQLKLRGEGGIKALLGMVRC--------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWI-VQNSNN  174 (246)
Q Consensus       104 ~~~~~l~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~L-v~ll~~  174 (246)
                      -..-...+ .++|.+++-+..        ....++..|+-.++.++.+       +.+..-+-+.+ ...+.| ..-+.+
T Consensus       412 lLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-------ys~~~l~p~l~-~L~s~LL~~AlFD  482 (1133)
T KOG1943|consen  412 LLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-------YSPSDLKPVLQ-SLASALLIVALFD  482 (1133)
T ss_pred             CcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-------CChhhhhHHHH-HHHHHHHHHHhcC
Confidence            22111111 256777766642        2456899999999998853       11111111111 112222 223344


Q ss_pred             CChhHHHHHHHHHHHh
Q 025930          175 EASPIRRHIELALCHL  190 (246)
Q Consensus       175 ~~~~v~~~a~~aL~~L  190 (246)
                      ..-.+|..|..|+...
T Consensus       483 revncRRAAsAAlqE~  498 (1133)
T KOG1943|consen  483 REVNCRRAASAALQEN  498 (1133)
T ss_pred             chhhHhHHHHHHHHHH
Confidence            5667888888888866

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=86.66  E-value=2.1  Score=38.66  Aligned_cols=171  Identities=13%  Similarity=0.145  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHhcCCcchHHHHH-hcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-----CCchhHHHHHhcCCHHHHH
Q 025930           46 IHRVAAGAIANLAMNETNQELIM-TQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-----GNDKLQLKLRGEGGIKALL  119 (246)
Q Consensus        46 ~~~~a~~~L~~la~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-----~~~~~~~~l~~~g~i~~L~  119 (246)
                      ++..|.++++-...++..|.... -.+....+...+.+ ..-..++.++|++.|++     .-|.....-....++ .+.
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~  484 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLL  484 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHH
Confidence            33446666666666665554332 12333344444443 23457888999999997     222212221121111 122


Q ss_pred             HHhc------CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC-------CChHHHHH-cccCCChhHHHHHHH
Q 025930          120 GMVR------CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD-------GALPWIVQ-NSNNEASPIRRHIEL  185 (246)
Q Consensus       120 ~ll~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~-------g~i~~Lv~-ll~~~~~~v~~~a~~  185 (246)
                      +++.      .....++.++.++|.|+.            ...+.+.+.       |.+..+.. -..++...||=++|.
T Consensus       485 ~~~~~A~~~~Ad~dkV~~navraLgnll------------Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCy  552 (728)
T KOG4535|consen  485 KMLRSAIEASADKDKVKSNAVRALGNLL------------QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACY  552 (728)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhHH------------HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHH
Confidence            2222      234568899999999988            333333322       22222222 234557889999999


Q ss_pred             HHHHhccCchhH-HHHHhC-CcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          186 ALCHLAQHEVNA-KDMISG-GALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       186 aL~~La~~~~~~-~~i~~~-g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      ++.||-.|+... +.+.-+ -..+.|..++.+..+=.+|--|..+|.
T Consensus       553 a~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  553 AMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS  599 (728)
T ss_pred             HHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence            999998876652 222223 345667778877766666666666664

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=86.51  E-value=20  Score=30.77  Aligned_cols=149  Identities=17%  Similarity=0.174  Sum_probs=85.0

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---cchHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhh----C
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN---ETNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLC----G  101 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~---~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~----~  101 (246)
                      .++.+...++.+.. .-+..|+.+++-++..   ......+.+ ...|.|..++.+.. ...++..++.+|.-++    .
T Consensus        87 L~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~  164 (309)
T PF05004_consen   87 LLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGS  164 (309)
T ss_pred             HHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence            47777888888743 3355677777766544   233444443 36778888887643 3455555555655443    3


Q ss_pred             CchhHHHHHhcCCHHHHHHH--hc----------CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHH
Q 025930          102 NDKLQLKLRGEGGIKALLGM--VR----------CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIV  169 (246)
Q Consensus       102 ~~~~~~~l~~~g~i~~L~~l--l~----------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv  169 (246)
                      +++.....++  .+..+...  .+          .+++.+...|+.+-+-|...-      ...... ... ...+|.|+
T Consensus       165 d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~------~~~~~~-~~~-~~~~~~l~  234 (309)
T PF05004_consen  165 DEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTL------PDSKLE-DLL-EEALPALS  234 (309)
T ss_pred             ChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcC------CHHHHH-HHH-HHHHHHHH
Confidence            3333332211  12211111  11          123567777776666655321      111122 222 34699999


Q ss_pred             HcccCCChhHHHHHHHHHHHh
Q 025930          170 QNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       170 ~ll~~~~~~v~~~a~~aL~~L  190 (246)
                      .+|...+.++|..|-.+|.-|
T Consensus       235 ~lL~s~d~~VRiAAGEaiAll  255 (309)
T PF05004_consen  235 ELLDSDDVDVRIAAGEAIALL  255 (309)
T ss_pred             HHhcCCCHHHHHHHHHHHHHH
Confidence            999999999999998887766

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=86.37  E-value=11  Score=33.05  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=59.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccC
Q 025930           73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQG  151 (246)
Q Consensus        73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~  151 (246)
                      +..+++=+.+.....++..++--|..-+.++..+.++...|.++.+++.+.. ++..+...++.++.-+-.        .
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~--------~   94 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLS--------R   94 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHc--------c
Confidence            4555555554445567777777777778999999999999999999999953 333244444444443332        1


Q ss_pred             ChhhhHHHHhCCChHHHHHccc
Q 025930          152 TKTGRSLLIDDGALPWIVQNSN  173 (246)
Q Consensus       152 ~~~~~~~l~~~g~i~~Lv~ll~  173 (246)
                      +...-..+.+.+....++.++.
T Consensus        95 d~~~~~l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen   95 DGLNMHLLLDRDSLRLLLKLLK  116 (361)
T ss_pred             CCcchhhhhchhHHHHHHHHhc
Confidence            1223333344556666677776

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=86.01  E-value=3.3  Score=31.30  Aligned_cols=84  Identities=12%  Similarity=0.092  Sum_probs=62.3

Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc---------
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS---------  231 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~---------  231 (246)
                      .++..|..-+.+.++.++..|+..|-.+..|..  -...+.+...+..|++++....+..++.-....+..         
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~  116 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP  116 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            357778888888999999999999999977443  467777888999999999875677777777666642         


Q ss_pred             ----ChhHHHHHHHhhhcC
Q 025930          232 ----SPAFQAEMRRLRIDY  246 (246)
Q Consensus       232 ----~~~~~~e~~~~~~~~  246 (246)
                          +.++-.++++.|+.|
T Consensus       117 ~l~~i~~~y~~L~~~G~~f  135 (144)
T cd03568         117 SLSLMSDLYKKLKNEGPDL  135 (144)
T ss_pred             ccHHHHHHHHHHHHcCCCC
Confidence                244455666666553

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=85.96  E-value=3.5  Score=31.07  Aligned_cols=84  Identities=10%  Similarity=0.031  Sum_probs=62.1

Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc---------
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQH--EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS---------  231 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~---------  231 (246)
                      .++..|..-+..+++.++..|+..|-.+..|  ..-...+.+.+.+..|+.++....+..++.-+...+.+         
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~  120 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP  120 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            4677888888889999999999999888775  33467777889999999999866666677666655532         


Q ss_pred             ----ChhHHHHHHHhhhcC
Q 025930          232 ----SPAFQAEMRRLRIDY  246 (246)
Q Consensus       232 ----~~~~~~e~~~~~~~~  246 (246)
                          +.++-.++++-|+.+
T Consensus       121 ~l~~i~~~y~~L~~~G~~F  139 (142)
T cd03569         121 QLKYVVDTYQILKAEGHKF  139 (142)
T ss_pred             ccHHHHHHHHHHHHcCCCC
Confidence                223556677766653

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=85.89  E-value=3.8  Score=30.98  Aligned_cols=72  Identities=11%  Similarity=0.078  Sum_probs=60.7

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-CChhHHHHHHHHHHHhcc
Q 025930          114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-EASPIRRHIELALCHLAQ  192 (246)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~v~~~a~~aL~~La~  192 (246)
                      ++..+.+-+.++++.++..|+.+|-.+..+       ....+...+....++..|+.++.. .++.|+..++..+...+.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkN-------CG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAEN-------CGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------CCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            467788888899999999999888887763       346788888888999999999988 688999999999988864

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=85.87  E-value=27  Score=31.66  Aligned_cols=191  Identities=13%  Similarity=0.104  Sum_probs=109.3

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCcchHHH--HHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANL-AMNETNQEL--IMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~~~~~~~--i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      .+..++.-++......-++.|..-|..+ +.+...-+.  +.+  .+..+++.+++..++..++.|++.|..++.+..- 
T Consensus       287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~--iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-  363 (516)
T KOG2956|consen  287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAE--ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-  363 (516)
T ss_pred             HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-
Confidence            3556666666543444455566655555 444222221  222  3556778888766788899999999999965533 


Q ss_pred             HHHHh--cCCHHHHHHHhcCCCHHHHHHHH-HHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930          107 LKLRG--EGGIKALLGMVRCGHPDVLAQVA-RGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       107 ~~l~~--~g~i~~L~~ll~~~~~~~~~~a~-~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                       ++.+  +-++..+++.-+..+.++...|. .++.-++.+        .+.        ..|..+..++...|...-..+
T Consensus       364 -~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~--------~P~--------~~I~~i~~~Ilt~D~~~~~~~  426 (516)
T KOG2956|consen  364 -RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH--------LPL--------QCIVNISPLILTADEPRAVAV  426 (516)
T ss_pred             -hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh--------Cch--------hHHHHHhhHHhcCcchHHHHH
Confidence             2222  12455566666666666655555 344455543        222        234555555555666565666


Q ss_pred             HHHHHHhccCchhHHHHH--hCCcHHHHHHHHhcCCHHHHHHHHHHHHcc------ChhHHHHHHHh
Q 025930          184 ELALCHLAQHEVNAKDMI--SGGALWELVRISRDCSREDIRTLAHRTLTS------SPAFQAEMRRL  242 (246)
Q Consensus       184 ~~aL~~La~~~~~~~~i~--~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~------~~~~~~e~~~~  242 (246)
                      +..+..+...-.. +.+.  -....|.+++-.. +....+|+.|.=+|..      ..+|.+++++|
T Consensus       427 iKm~Tkl~e~l~~-EeL~~ll~diaP~~iqay~-S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L  491 (516)
T KOG2956|consen  427 IKMLTKLFERLSA-EELLNLLPDIAPCVIQAYD-STSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL  491 (516)
T ss_pred             HHHHHHHHhhcCH-HHHHHhhhhhhhHHHHHhc-CchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence            6677777653222 2222  2457777777776 4556677777766653      34566666554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=85.73  E-value=5.6  Score=37.88  Aligned_cols=85  Identities=13%  Similarity=0.098  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHh
Q 025930           43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV  122 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll  122 (246)
                      +.++++.|+.+|+=+...+.        ..++-.+.+|++.-|+.++-.++.||.-.|....++..+      ..|-.+.
T Consensus       568 nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~  633 (929)
T KOG2062|consen  568 NDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLT  633 (929)
T ss_pred             chHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhh
Confidence            34455555555554433321        124566777877678999988888998777666555443      4444445


Q ss_pred             cCCCHHHHHHHHHHHHHhh
Q 025930          123 RCGHPDVLAQVARGIANFA  141 (246)
Q Consensus       123 ~~~~~~~~~~a~~~L~nL~  141 (246)
                      +++..-+++-|+.++..+.
T Consensus       634 ~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  634 SDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             cChHHHHHHHHHHHHHHHH
Confidence            5555557777777766543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=85.57  E-value=16  Score=35.36  Aligned_cols=168  Identities=15%  Similarity=0.095  Sum_probs=103.3

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCchhHHHHHhcCCHHHHH
Q 025930           43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDKLQLKLRGEGGIKALL  119 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~~~~~l~~~g~i~~L~  119 (246)
                      .+.+++.++.-+++++..-..  .....+.++-+..+..+. ...++..|...+.++.   ..+.   -. .....+.++
T Consensus       250 ~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~---d~-~~~~~~~l~  322 (759)
T KOG0211|consen  250 TPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD---DV-VKSLTESLV  322 (759)
T ss_pred             chhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch---hh-hhhhhHHHH
Confidence            455555566666666554222  444455666777777763 3456777777776665   2221   11 112457788


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhH
Q 025930          120 GMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNA  197 (246)
Q Consensus       120 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~  197 (246)
                      ....+++..++.........|+.           ..-.....-..+++...+++....+.+..+..-...++.  +.+..
T Consensus       323 ~~~~d~~~~v~~~~~~~~~~L~~-----------~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  323 QAVEDGSWRVSYMVADKFSELSS-----------AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             HHhcChhHHHHHHHhhhhhhHHH-----------HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence            88888888888888877777763           222223334457788888888888888888777777765  44455


Q ss_pred             HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 025930          198 KDMISGGALWELVRISRDCSREDIRTLAHRT  228 (246)
Q Consensus       198 ~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~  228 (246)
                      ..+.....++.+..++.+.......+.|.-.
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~  422 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVI  422 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence            6666666778887777654444433444433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=85.35  E-value=18  Score=33.69  Aligned_cols=53  Identities=19%  Similarity=0.124  Sum_probs=31.5

Q ss_pred             CChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          175 EASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       175 ~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      ++..+|..|+.||...+.+.+.  .+......-.|.+.+ ++.++++|..|.-++.
T Consensus       499 EN~ivRsaAv~aLskf~ln~~d--~~~~~sv~~~lkRcl-nD~DdeVRdrAsf~l~  551 (898)
T COG5240         499 ENNIVRSAAVQALSKFALNISD--VVSPQSVENALKRCL-NDQDDEVRDRASFLLR  551 (898)
T ss_pred             hhhHHHHHHHHHHHHhccCccc--cccHHHHHHHHHHHh-hcccHHHHHHHHHHHH
Confidence            4778999999999888775433  111112223344444 4666677776665554

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=84.79  E-value=3.8  Score=28.36  Aligned_cols=70  Identities=16%  Similarity=0.096  Sum_probs=52.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cc
Q 025930          116 KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HE  194 (246)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~  194 (246)
                      ...+..+.++.+.++..+...|+.|....         . .......+++..+...++++++-+-.+|...|..|+. .+
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~---------~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESK---------S-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcC---------C-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence            44556667888889999999999998531         1 1122224567788889999999999999999999987 44


Q ss_pred             h
Q 025930          195 V  195 (246)
Q Consensus       195 ~  195 (246)
                      +
T Consensus        76 ~   76 (92)
T PF10363_consen   76 D   76 (92)
T ss_pred             H
Confidence            4

>KOG2676 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.77  E-value=1.1  Score=38.74  Aligned_cols=62  Identities=19%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             HHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhh-CCchhHHHHHh
Q 025930           50 AAGAIANLAM-NETNQELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLC-GNDKLQLKLRG  111 (246)
Q Consensus        50 a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~  111 (246)
                      ..+.+++++. +++++..+.+.||++.++.-.. +..||-+++....++++|. .|.+|++.+..
T Consensus       376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k  440 (478)
T KOG2676|consen  376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK  440 (478)
T ss_pred             HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence            5668899964 4889999999999998875433 4467999999999999998 67888887743

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=84.73  E-value=4.6  Score=37.42  Aligned_cols=100  Identities=13%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      |++..|+..--+..+.++++.|+.+|+-++.++.        +.++-.++++++..++.++-..+-+|.-.|.....+. 
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-  621 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-  621 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-
Confidence            4466666652233356678888888887776642        3456667778766678888778888887775443322 


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK  142 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  142 (246)
                           ++..|-.++.....-+++.|+.++..+..
T Consensus       622 -----a~diL~~L~~D~~dfVRQ~AmIa~~mIl~  650 (926)
T COG5116         622 -----ATDILEALMYDTNDFVRQSAMIAVGMILM  650 (926)
T ss_pred             -----HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence                 24555666667777788888877776554

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=84.69  E-value=10  Score=30.97  Aligned_cols=134  Identities=14%  Similarity=0.105  Sum_probs=85.9

Q ss_pred             hhhHHhHhhccccccHHHHHHhCC---HHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHH
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGG---LTSLLMLLGSS-EDETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~---i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll   80 (246)
                      +.+.++.=++.+++.|..++++.+   +-+.+...++. .-+.++-.+.++++.|.+++  ..-..+.....+|.++.++
T Consensus       119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm  198 (315)
T COG5209         119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM  198 (315)
T ss_pred             HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence            445566667889999999999876   45555554443 23556677999999998874  3445566778899999999


Q ss_pred             hcCCChHHHHHHHHHHHHhhCCchhHHHHH----hcCCHHHHHHH-----hcCCCHHHHHHHHHHHHHhh
Q 025930           81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLR----GEGGIKALLGM-----VRCGHPDVLAQVARGIANFA  141 (246)
Q Consensus        81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~----~~g~i~~L~~l-----l~~~~~~~~~~a~~~L~nL~  141 (246)
                      ..++ +-.+-.|..++..+-.++..-+.+.    ..-++..++.-     .+.+...+.+.+++.-..||
T Consensus       199 e~gS-ElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs  267 (315)
T COG5209         199 ELGS-ELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS  267 (315)
T ss_pred             Hhhh-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence            8743 4445456666666665554433332    22233322222     23455667788887777777

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=84.54  E-value=23  Score=33.49  Aligned_cols=146  Identities=14%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHH---HhcCCChHHHHHHHHHHHHhhC
Q 025930           25 IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT---AANAEDPQTLRMVAGAIANLCG  101 (246)
Q Consensus        25 i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~l---l~~~~~~~~~~~a~~aL~~L~~  101 (246)
                      ...+..+..++..+. + ++..+.-++++|.|+-.++..++.+...  ...+...   .++.++..++...+....|.+-
T Consensus       585 ~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv  660 (745)
T KOG0301|consen  585 EEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSV  660 (745)
T ss_pred             hhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHH
Confidence            333456777777776 3 6677888999999999888888777653  2222221   2233455665433333344440


Q ss_pred             CchhHHHHHhcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-
Q 025930          102 NDKLQLKLRGEGGIKALLGMVRC-----GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-  175 (246)
Q Consensus       102 ~~~~~~~l~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-  175 (246)
                        -..+.-.+.++.+.|...+..     ++-+-....+.++.+|+..         +.....+.+.-.+..++.-+++. 
T Consensus       661 --~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~---------~~~~~~~A~~~~v~sia~~~~~~~  729 (745)
T KOG0301|consen  661 --LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV---------DASVIQLAKNRSVDSIAKKLKEAV  729 (745)
T ss_pred             --HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc---------cHHHHHHHHhcCHHHHHHHHHHhc
Confidence              000001125666666666642     2333445666788888843         45666677666677777766543 


Q ss_pred             ChhHHHHHHH
Q 025930          176 ASPIRRHIEL  185 (246)
Q Consensus       176 ~~~v~~~a~~  185 (246)
                      .....+..+.
T Consensus       730 ~~~~~k~~a~  739 (745)
T KOG0301|consen  730 SNPSGKNIAR  739 (745)
T ss_pred             cCchhhHHHH
Confidence            3333344333

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=83.74  E-value=23  Score=29.02  Aligned_cols=137  Identities=17%  Similarity=0.115  Sum_probs=83.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNE-TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLK  108 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~  108 (246)
                      ++.|+.-+....++..+......|..++.++ .+...+     +..+..+... .+....-.+.+.+..+- .++...  
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f--   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF--   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH--
Confidence            5667776777778999999999999998887 443333     3445555554 34444334455555554 222221  


Q ss_pred             HHhcCCHHHHHHH-----h---c--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc-cCCCh
Q 025930          109 LRGEGGIKALLGM-----V---R--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS-NNEAS  177 (246)
Q Consensus       109 l~~~g~i~~L~~l-----l---~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll-~~~~~  177 (246)
                          +.+..++..     .   +  +...+.....+..+..+|..        .++     .....++.+-.++ ++.++
T Consensus        74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~--------~p~-----~g~~ll~~ls~~L~~~~~~  136 (234)
T PF12530_consen   74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS--------RPD-----HGVDLLPLLSGCLNQSCDE  136 (234)
T ss_pred             ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh--------Chh-----hHHHHHHHHHHHHhccccH
Confidence                223333333     0   1  12334445555677788742        122     2234688888888 78888


Q ss_pred             hHHHHHHHHHHHhcc
Q 025930          178 PIRRHIELALCHLAQ  192 (246)
Q Consensus       178 ~v~~~a~~aL~~La~  192 (246)
                      .++..++.+|..||.
T Consensus       137 ~~~alale~l~~Lc~  151 (234)
T PF12530_consen  137 VAQALALEALAPLCE  151 (234)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999984

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.57  E-value=61  Score=33.86  Aligned_cols=186  Identities=16%  Similarity=0.127  Sum_probs=94.2

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh---H
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIAN-LAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL---Q  106 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~-la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~---~  106 (246)
                      ||.|...=-. +++.+|.. ..-+|| |..|...--.-.-.....-|+.-+.+. .=.+++.+|.||..|-..+..   .
T Consensus      1000 IPrLyRY~yD-P~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~k-ewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 1000 IPRLYRYQYD-PDKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSK-EWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred             hHHHhhhccC-CcHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHcCCChHHHH
Confidence            4444444222 36666665 445555 455532111111011233333333432 346899999999999855433   2


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHH---HHHHHHhhc--ccccccccCChhhhHHHHhCCChHHHHH--cccCCChhH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQV---ARGIANFAK--CESRASTQGTKTGRSLLIDDGALPWIVQ--NSNNEASPI  179 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a---~~~L~nL~~--~~~~~~~~~~~~~~~~l~~~g~i~~Lv~--ll~~~~~~v  179 (246)
                      +.+-+  .-..+++.+.+=.+.+++.+   +.++.-+|.  ++.    .....+++.+  ..++|+|..  .+ +.-+++
T Consensus      1077 e~lpe--lw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~----~~~~~~~~~l--~~iLPfLl~~gim-s~v~ev 1147 (1702)
T KOG0915|consen 1077 EKLPE--LWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV----TNGAKGKEAL--DIILPFLLDEGIM-SKVNEV 1147 (1702)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCcccHHHHH--HHHHHHHhccCcc-cchHHH
Confidence            22221  22333444433344555544   455555553  110    0112223322  245676654  33 567899


Q ss_pred             HHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 025930          180 RRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRT  228 (246)
Q Consensus       180 ~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~  228 (246)
                      |..+..++..|+.+....-.=--...++.|+.....-++..+-..+.++
T Consensus      1148 r~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1148 RRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred             HHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence            9999999999987433311111234566667766655666555666655

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=83.32  E-value=44  Score=34.00  Aligned_cols=196  Identities=11%  Similarity=0.034  Sum_probs=110.4

Q ss_pred             HHHhCC---HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-
Q 025930           25 IVEAGG---LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-  100 (246)
Q Consensus        25 i~~~g~---i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-  100 (246)
                      ..+.|.   ++.+...+++=.....+..|...|..|+..-..-..+-  ..+|.++.++.+ ....++..|+.+|..+- 
T Consensus       415 ~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD--RVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~  491 (1431)
T KOG1240|consen  415 PKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD--RVLPYFVHLLMD-SEADVRATALETLTELLA  491 (1431)
T ss_pred             ccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh--hhHHHHHHHhcC-chHHHHHHHHHHHHHHHh
Confidence            344554   56666666554445668889999999987733322232  258899999988 56889989988887775 


Q ss_pred             ----CCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcc-------------------cccccc--cCChh
Q 025930          101 ----GNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKC-------------------ESRAST--QGTKT  154 (246)
Q Consensus       101 ----~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~-------------------~~~~~~--~~~~~  154 (246)
                          -.+.+...+.++ ..|.|-.++.+ ....++..-+..|..|+..                   ++.++.  +..+.
T Consensus       492 ~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~  570 (1431)
T KOG1240|consen  492 LVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNT  570 (1431)
T ss_pred             hccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccch
Confidence                223333444444 56777777765 2233443333333333310                   000000  11122


Q ss_pred             hhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          155 GRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       155 ~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      ..+++.+ ++=+..+.++.++.+-|+..-+..|.-||.  ..+..    +.=.+++|+.++.+. ++.+|.+-.+.+.
T Consensus       571 ~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks----ND~iLshLiTfLNDk-Dw~LR~aFfdsI~  642 (1431)
T KOG1240|consen  571 ELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS----NDVILSHLITFLNDK-DWRLRGAFFDSIV  642 (1431)
T ss_pred             HHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc----ccchHHHHHHHhcCc-cHHHHHHHHhhcc
Confidence            3333331 222233456666667788777888888874  22111    122577888888744 6667766666654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.05  E-value=47  Score=32.22  Aligned_cols=158  Identities=13%  Similarity=0.154  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHh-cCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHH
Q 025930           42 EDETIHRVAAGAIANL-AMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLG  120 (246)
Q Consensus        42 ~~~~~~~~a~~~L~~l-a~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~  120 (246)
                      ..+-+++.|+.++-.| +.+++.+..+.     +.+-.++.+ .++.+.-.|+.|.-..|-  +.-+.+.  +-.+.+..
T Consensus       155 ~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD-~splVvgsAv~AF~evCP--erldLIH--knyrklC~  224 (968)
T KOG1060|consen  155 PSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLAD-RSPLVVGSAVMAFEEVCP--ERLDLIH--KNYRKLCR  224 (968)
T ss_pred             CcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcC-CCCcchhHHHHHHHHhch--hHHHHhh--HHHHHHHh
Confidence            3677888899999988 45555555543     345556666 457777677777766661  1111121  12345556


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcc--cccccc----cCCh----------hhhHHHHhCCC----hHHHHHcccCCChhHH
Q 025930          121 MVRCGHPDVLAQVARGIANFAKC--ESRAST----QGTK----------TGRSLLIDDGA----LPWIVQNSNNEASPIR  180 (246)
Q Consensus       121 ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~----~~~~----------~~~~~l~~~g~----i~~Lv~ll~~~~~~v~  180 (246)
                      ++..-++.-+...+..|...|.+  +++...    .++.          ..+.-+...--    ++..-.++++.++.+-
T Consensus       225 ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVV  304 (968)
T KOG1060|consen  225 LLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVV  304 (968)
T ss_pred             hccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHH
Confidence            66555555566666666666542  111000    0000          00000011111    2233346777899999


Q ss_pred             HHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc
Q 025930          181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       181 ~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~  215 (246)
                      ..++.+.+.||-..+..      +.+..|++++.+
T Consensus       305 mA~aql~y~lAP~~~~~------~i~kaLvrLLrs  333 (968)
T KOG1060|consen  305 MAVAQLFYHLAPKNQVT------KIAKALVRLLRS  333 (968)
T ss_pred             HHHHhHHHhhCCHHHHH------HHHHHHHHHHhc
Confidence            99999999998744332      247789999975

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=82.84  E-value=14  Score=34.93  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHH
Q 025930          110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCH  189 (246)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~  189 (246)
                      .+.+.+|.+++++++.|..++-.-+.-+-++.           +...+.+.+..++|.+..-+.+.++.+|+..+.++..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i-----------~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~  395 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI-----------DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAV  395 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHh-----------hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHH
Confidence            45568999999999998887766655555544           4666677788899999999999999999999999998


Q ss_pred             hcc
Q 025930          190 LAQ  192 (246)
Q Consensus       190 La~  192 (246)
                      |+.
T Consensus       396 La~  398 (690)
T KOG1243|consen  396 LAP  398 (690)
T ss_pred             HHh
Confidence            865

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=82.81  E-value=22  Score=34.74  Aligned_cols=144  Identities=10%  Similarity=0.065  Sum_probs=90.8

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      .+-.++.......+-.+...|+..|..++..  +..+...  .+..+.++.-+.+ .-..++..+..++...+...    
T Consensus       295 ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~--~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~----  367 (815)
T KOG1820|consen  295 LLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA--KNVFPSLLDRLKE-KKSELRDALLKALDAILNST----  367 (815)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH--HhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhcc----
Confidence            3444555444433555566678888888665  2222222  3467777777776 34667766666666555311    


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-CESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                        .-....+.+..+++++++..+..+...+..... .+        +.....-.-.+.+|.++....+.+.+||..|..+
T Consensus       368 --~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~--------~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~  437 (815)
T KOG1820|consen  368 --PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG--------PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEA  437 (815)
T ss_pred             --cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC--------CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHH
Confidence              112346778889999999998887766665442 21        1111111224678999999999999999999999


Q ss_pred             HHHh
Q 025930          187 LCHL  190 (246)
Q Consensus       187 L~~L  190 (246)
                      +..+
T Consensus       438 ~~~v  441 (815)
T KOG1820|consen  438 VAAV  441 (815)
T ss_pred             HHHH
Confidence            8877

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=82.65  E-value=17  Score=30.36  Aligned_cols=105  Identities=13%  Similarity=0.106  Sum_probs=70.9

Q ss_pred             ccccccHHHHH--HhCC---HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-cCCChHHH
Q 025930           16 IRAQSNQEKIV--EAGG---LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-NAEDPQTL   89 (246)
Q Consensus        16 ~~~~~~~~~i~--~~g~---i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~   89 (246)
                      +..+.++.++.  .-|+   |..|++-+..+ ..-.+..++.+++.|-...          .|+.|.+.|. ..+++-++
T Consensus       169 ~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVR  237 (289)
T KOG0567|consen  169 PLFERYRAMFYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVR  237 (289)
T ss_pred             hHHHHHhhhhHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHH
Confidence            44444555443  3344   66667666654 5556667888888775554          5788877665 44567788


Q ss_pred             HHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930           90 RMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA  141 (246)
Q Consensus        90 ~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~  141 (246)
                      -.|+.||..++..+          ++++|.+.+..+++-+.+.|..+|-.+.
T Consensus       238 hEaAeALGaIa~e~----------~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  238 HEAAEALGAIADED----------CVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHhhcCHH----------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            88999998765432          4677888888887778888887776655

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=82.31  E-value=36  Score=31.71  Aligned_cols=170  Identities=18%  Similarity=0.113  Sum_probs=92.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcC---CChHHHHHHHHHHHHhh----C
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANA---EDPQTLRMVAGAIANLC----G  101 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~---~~~~~~~~a~~aL~~L~----~  101 (246)
                      +..+.+++.++.-..  ..|+..+..+...  ....+      .+..+..++.+.   .++.+...+..++.++.    .
T Consensus       359 ~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~~------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~  430 (574)
T smart00638      359 LKFIKQWIKNKKITP--LEAAQLLAVLPHTARYPTEE------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV  430 (574)
T ss_pred             HHHHHHHHHcCCCCH--HHHHHHHHHHHHhhhcCCHH------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence            667777777753221  2233333333211  11222      244555565542   34556666666666665    2


Q ss_pred             CchhHHHHHhcCCHHHHHHHhc----CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-C--
Q 025930          102 NDKLQLKLRGEGGIKALLGMVR----CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-N--  174 (246)
Q Consensus       102 ~~~~~~~l~~~g~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~--  174 (246)
                      +.......+-...++.+...+.    ..+.+-+...+.+|+|+..                   ...++.+...+. .  
T Consensus       431 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-------------------~~~i~~l~~~l~~~~~  491 (574)
T smart00638      431 NTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-------------------PSSIKVLEPYLEGAEP  491 (574)
T ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-------------------hhHHHHHHHhcCCCCC
Confidence            2221101111224555555443    3456666778888888873                   134555655554 2  


Q ss_pred             CChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHH-ccChhH
Q 025930          175 EASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTL-TSSPAF  235 (246)
Q Consensus       175 ~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L-~~~~~~  235 (246)
                      ....+|..|+++|..++. +++.        ..+.|+.+..+ ..+.++|-+|.-.| .+.|..
T Consensus       492 ~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~  547 (574)
T smart00638      492 LSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSV  547 (574)
T ss_pred             CCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCH
Confidence            256899999999999975 4433        34556666654 45666777777666 444654

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=82.16  E-value=9  Score=28.35  Aligned_cols=72  Identities=15%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC---CChhHHHHHHHHHHHh
Q 025930          114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN---EASPIRRHIELALCHL  190 (246)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~---~~~~v~~~a~~aL~~L  190 (246)
                      +++.|-+-++++++.++..|+.+|-.+..+       +.+.+...+.....+..|+.++.+   .+++++..++..+...
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkN-------cg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W  110 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKN-------CGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW  110 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-------CChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence            467788888899999999999988888763       335677888877788889999975   3788999999998887


Q ss_pred             cc
Q 025930          191 AQ  192 (246)
Q Consensus       191 a~  192 (246)
                      +.
T Consensus       111 ~~  112 (133)
T cd03561         111 SE  112 (133)
T ss_pred             HH
Confidence            64

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=82.12  E-value=28  Score=28.88  Aligned_cols=107  Identities=15%  Similarity=0.200  Sum_probs=68.6

Q ss_pred             HHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCcchHHHHHhcCc--HHHHHHHHhcCC---ChHHHHHHHHHHHHhh--
Q 025930           31 LTSLLMLLGSS---EDETIHRVAAGAIANLAMNETNQELIMTQGG--IGLLSTTAANAE---DPQTLRMVAGAIANLC--  100 (246)
Q Consensus        31 i~~Li~ll~~~---~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~--i~~L~~ll~~~~---~~~~~~~a~~aL~~L~--  100 (246)
                      ...+...+...   ..+..+..++++++|+-.++..+..+.+...  +.-.+..+....   +..++..++..+.|++  
T Consensus       108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~  187 (268)
T PF08324_consen  108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVL  187 (268)
T ss_dssp             HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            44444444443   3567788899999999888888888876433  222222222222   5778888889999998  


Q ss_pred             ---C--CchhHHHHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Q 025930          101 ---G--NDKLQLKLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAK  142 (246)
Q Consensus       101 ---~--~~~~~~~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~  142 (246)
                         .  +.+.+..+     +..+...+.  ..+++.....+.++++|..
T Consensus       188 ~~~~~~~~~~~~~l-----l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~  231 (268)
T PF08324_consen  188 LHKNRSDEEWQSEL-----LSSIIEVLSREESDEEALYRLLVALGTLLS  231 (268)
T ss_dssp             HHHCTS-CCHHHHH-----HHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred             HHhcCCChHHHHHH-----HHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence               1  12222222     344455332  3689999999999999995

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=81.55  E-value=36  Score=33.44  Aligned_cols=148  Identities=9%  Similarity=0.051  Sum_probs=87.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhccccccccc
Q 025930           73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQ  150 (246)
Q Consensus        73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~  150 (246)
                      +..|.++... ...++......+|+-.+..+.-...-.+..+.|..+.++.  +++|.+...+-.++-.++-        
T Consensus       532 ld~L~qlas~-~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q--------  602 (1005)
T KOG2274|consen  532 LDGLLQLASK-SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ--------  602 (1005)
T ss_pred             HHHHHHHccc-ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH--------
Confidence            4455555555 3456666778888888754433344556666676665553  6677776666666666662        


Q ss_pred             CChhhhHHHHhCCChHHHHHcccCCC----hhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 025930          151 GTKTGRSLLIDDGALPWIVQNSNNEA----SPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLA  225 (246)
Q Consensus       151 ~~~~~~~~l~~~g~i~~Lv~ll~~~~----~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A  225 (246)
                       ...+..-+. ...+|.++..+..++    +..+..+...|..+-. .+.--....-+-+.|.+.++.--+++...--.|
T Consensus       603 -~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~  680 (1005)
T KOG2274|consen  603 -IAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNA  680 (1005)
T ss_pred             -HHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhH
Confidence             112222222 346999999997775    6777777777776644 222222333334566666666444445555677


Q ss_pred             HHHHcc
Q 025930          226 HRTLTS  231 (246)
Q Consensus       226 ~~~L~~  231 (246)
                      .++|+.
T Consensus       681 ~EcLra  686 (1005)
T KOG2274|consen  681 TECLRA  686 (1005)
T ss_pred             HHHHHH
Confidence            777754

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=81.47  E-value=38  Score=31.85  Aligned_cols=103  Identities=17%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCch
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDK  104 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~  104 (246)
                      +|.+..++.-+.+. |-.++..++..|+.+...-.--......|.+..|..-+.+ ..+.++..|..+|+.+-   .+++
T Consensus        90 ~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~D-RE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFD-REKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhccCChH
Confidence            56677777777665 6677777888887776553222233333445555554444 24778889999998875   4555


Q ss_pred             hHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhc
Q 025930          105 LQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAK  142 (246)
Q Consensus       105 ~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~  142 (246)
                      |.       .+-.|+..++ .++.+++..|.   .|+..
T Consensus       168 n~-------~~n~l~~~vqnDPS~EVRr~al---lni~v  196 (885)
T COG5218         168 NR-------IVNLLKDIVQNDPSDEVRRLAL---LNISV  196 (885)
T ss_pred             HH-------HHHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence            43       2335666776 45677777665   56654

>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins

Probab=81.43  E-value=2  Score=30.65  Aligned_cols=41  Identities=20%  Similarity=0.273  Sum_probs=35.5

Q ss_pred             HHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHH
Q 025930           91 MVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLA  131 (246)
Q Consensus        91 ~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~  131 (246)
                      .....+..|+..|+....+++.|+++.|+.+|.+++.++..
T Consensus        65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai  105 (108)
T PF08216_consen   65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI  105 (108)
T ss_pred             HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence            45667888889999999999999999999999998877543

A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=81.24  E-value=13  Score=34.67  Aligned_cols=141  Identities=16%  Similarity=0.062  Sum_probs=78.5

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh-c
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS---EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA-N   82 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~---~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~-~   82 (246)
                      +.-+++...|.+...+...+-...++.|.+.|...   .+...+..+..+|+|+....          .++.+...+. +
T Consensus       420 ~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~  489 (574)
T smart00638      420 AYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----------SIKVLEPYLEGA  489 (574)
T ss_pred             HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----------HHHHHHHhcCCC
Confidence            34445555555555443233344666666655431   23333444788888887654          3444544444 2


Q ss_pred             -CCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHH
Q 025930           83 -AEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSL  158 (246)
Q Consensus        83 -~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~  158 (246)
                       ..+..++..|++||..++ ..+.-        +-+.++.++.  ..+++++..|...|...-           |.    
T Consensus       490 ~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~-----------P~----  546 (574)
T smart00638      490 EPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLMETK-----------PS----  546 (574)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhcC-----------CC----
Confidence             234678889999999886 33322        2345666665  456778877776665531           11    


Q ss_pred             HHhCCChHHHHHcccCC-ChhHHHHH
Q 025930          159 LIDDGALPWIVQNSNNE-ASPIRRHI  183 (246)
Q Consensus       159 l~~~g~i~~Lv~ll~~~-~~~v~~~a  183 (246)
                         ...+..++..+..+ +.+|....
T Consensus       547 ---~~~l~~ia~~l~~E~~~QV~sfv  569 (574)
T smart00638      547 ---VALLQRIAELLNKEPNLQVASFV  569 (574)
T ss_pred             ---HHHHHHHHHHHhhcCcHHHHHHh
Confidence               23466666666544 45554443

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=80.81  E-value=8.2  Score=28.97  Aligned_cols=72  Identities=10%  Similarity=-0.015  Sum_probs=57.7

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC------CChhHHHHHHHHH
Q 025930          114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN------EASPIRRHIELAL  187 (246)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~------~~~~v~~~a~~aL  187 (246)
                      ++..+.+-+.++++.++-.|+.+|-.+..+       ..+.+...+...+++..|+.++.+      .++.|+...+..+
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkN-------CG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li  111 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKN-------CGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL  111 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------cCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence            567788888899999999999888877753       336788888888999999999964      3678999988888


Q ss_pred             HHhcc
Q 025930          188 CHLAQ  192 (246)
Q Consensus       188 ~~La~  192 (246)
                      ..-+.
T Consensus       112 ~~W~~  116 (139)
T cd03567         112 YSWTL  116 (139)
T ss_pred             HHHHH
Confidence            76653

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.25  E-value=65  Score=31.97  Aligned_cols=109  Identities=8%  Similarity=-0.019  Sum_probs=69.5

Q ss_pred             hCCHHHHHHHhc------CC-CCHHHHHHHHHHHHHhcCC---cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHH
Q 025930           28 AGGLTSLLMLLG------SS-EDETIHRVAAGAIANLAMN---ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIA   97 (246)
Q Consensus        28 ~g~i~~Li~ll~------~~-~~~~~~~~a~~~L~~la~~---~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~   97 (246)
                      .|.++-+++.|.      .+ +++.-+..|..++++++.-   +.--+...|.=.+..++..+++ +-..++..||+.+.
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~  487 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLS  487 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHH
Confidence            677888888887      22 2344455588888888732   1111222232234455566666 45778999999999


Q ss_pred             Hhh----CCchhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhc
Q 025930           98 NLC----GNDKLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAK  142 (246)
Q Consensus        98 ~L~----~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~  142 (246)
                      .++    .++.+-..     ++......|. +.+-.++..|+-+|..+-+
T Consensus       488 ~~~~~df~d~~~l~~-----ale~t~~~l~~d~~lPV~VeAalALq~fI~  532 (1010)
T KOG1991|consen  488 QFSSIDFKDPNNLSE-----ALELTHNCLLNDNELPVRVEAALALQSFIS  532 (1010)
T ss_pred             HHHhccCCChHHHHH-----HHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence            998    23333222     3555666676 6666789999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-23
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-19
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-20
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-20
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-17
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-21
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-20
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-20
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-17
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-19
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-15
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-13
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	9e-13
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-19
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-17
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-15
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-12
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-10
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-17
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-14
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-17
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-13
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-09
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-09
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-16
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-13
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-15
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-14
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-14
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-13
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-12
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-09
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-12
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-05
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 96.4 bits (240), Expect = 4e-23
 Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 11/215 (5%)

Query: 18  AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGG-IGLL 76
                +  +    +  L  LL + ED+ +   AA  +  L+  E ++  IM     +  +
Sbjct: 6   INYQDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64

Query: 77  STTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARG 136
             T  N  D +T R  AG + NL  + +  L +   GGI AL+ M+      VL      
Sbjct: 65  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 137 IANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVN 196
           + N    +  A        +  +   G L  +V   N             L  LA     
Sbjct: 125 LHNLLLHQEGA--------KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 197 AKDMI-SGGALWELVRISRDCSREDIRTLAHRTLT 230
           +K +I + G    LV I R  + E +     R L 
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 87.9 bits (218), Expect = 4e-20
 Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 17/231 (7%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLS 77
           +  +  +  AGGL  ++ LL +  +     +    +  LA  N+ ++ +I+  GG   L 
Sbjct: 133 EGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191

Query: 78  TTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGI 137
                    + L   +  +  L      +  +   GG++AL   +      ++      +
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251

Query: 138 ANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNA 197
            N +   ++               +G L  +VQ   ++   +       L +L  +    
Sbjct: 252 RNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 198 KDMI-SGGALWELVRISRDCS-REDIRTLAHRTLT--SSPAFQAEMRRLRI 244
           K M+   G +  LVR       REDI   A   L   +S   +AEM +  +
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 86.0 bits (213), Expect = 2e-19
 Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 19/229 (8%)

Query: 19  QSNQEKIVEAGGLTSLL-MLLGSSEDETIHRVAAGAIANLA----MNETNQELIMTQGGI 73
             N+  + + GG+ +L+  +L + + E I   A  A+ +L       E  Q  +    G+
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 357

Query: 74  GLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQV 133
            ++            ++   G I NL         LR +G I  L+ ++   H D   + 
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417

Query: 134 ARGIANFAKCESRASTQ-------------GTKTGRSLLIDDGALPWIVQNSNNEASPIR 180
           + G       E     +                  R ++     +P  VQ   +    I+
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 477

Query: 181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229
           R     LC LAQ +  A+ + + GA   L  +      E + T A   L
Sbjct: 478 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 30/195 (15%)

Query: 18  AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLL- 76
           A+  Q  +    GL  ++ LL       + +   G I NLA+   N   +  QG I  L 
Sbjct: 344 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 403

Query: 77  --------------------STTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIK 116
                                         + +    GA+  L  +   ++ +RG   I 
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463

Query: 117 ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA 176
             + ++     ++    A  +   A+ +              +  +GA   + +  ++  
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQDKE---------AAEAIEAEGATAPLTELLHSRN 514

Query: 177 SPIRRHIELALCHLA 191
             +  +    L  ++
Sbjct: 515 EGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 15/204 (7%)

Query: 18  AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLL 76
           + +  ++    G L +L+ LLGS  D  +   AAG ++NL   N  N+ ++   GGI  L
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313

Query: 77  STTAANAED-PQTLRMVAGAIANLC----GNDKLQLKLRGEGGIKALLGMVRCGHPDVLA 131
             T   A D          A+ +L       +  Q  +R   G+  ++ ++       L 
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373

Query: 132 QVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLA 191
           +   G+                   + L + GA+P +VQ         +R   +      
Sbjct: 374 KATVGLIRNLALCPAN--------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425

Query: 192 QHEVNAKDMISGGALWELVRISRD 215
             E    + I  G    L  ++RD
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARD 449

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 54.8 bits (132), Expect = 7e-09
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 17  RAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLL 76
           R   N+  I     +   + LL  S  E I RVAAG +  LA ++   E I  +G    L
Sbjct: 448 RDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506

Query: 77  STTAANAEDPQTLRMVAGAIANL 99
            T   ++ +       A  +  +
Sbjct: 507 -TELLHSRNEGVATYAAAVLFRM 528

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 94.6 bits (235), Expect = 2e-22
 Identities = 47/211 (22%), Positives = 76/211 (36%), Gaps = 11/211 (5%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGG-IGLLSTT 79
             +  +    +  L  LL + ED+ +   AA  +  L+  E ++  IM     +  +  T
Sbjct: 6   QDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 80  AANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIAN 139
             N  D +T R  AG + NL  + +  L +   GGI AL+ M+      VL      + N
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 140 FAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKD 199
                        +  +  +   G L  +V   N             L  LA     +K 
Sbjct: 125 LL--------LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176

Query: 200 MI-SGGALWELVRISRDCSREDIRTLAHRTL 229
           +I + G    LV I R  + E +     R L
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 88.8 bits (220), Expect = 2e-20
 Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 20/232 (8%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           Q ++  I+ +GG  +L+ ++ +   E +    +  +  L++  +N+  I+  GG+  L  
Sbjct: 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL-G 230

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
                   + ++     + NL      Q  +  EG +  L+ ++     +V+   A  ++
Sbjct: 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILS 288

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQN--SNNEASPIRRHIELALCHLA----Q 192
           N      +         + ++   G +  +V+      +   I      AL HL     +
Sbjct: 289 NLTCNNYKN--------KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 340

Query: 193 HEVNAKDMISGGALWELVRISRDCSREDIR---TLAHRTLTSSPAFQAEMRR 241
            E+    +     L  +V++    S   +        R L   PA  A +R 
Sbjct: 341 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 392

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.9 bits (215), Expect = 9e-20
 Identities = 31/205 (15%), Positives = 71/205 (34%), Gaps = 11/205 (5%)

Query: 20  SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT 79
           S    +     +++++  + ++ D    R  AG + NL+ +      I   GGI  L   
Sbjct: 47  SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL-VK 105

Query: 80  AANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
              +     L      + NL    +  ++ +R  GG++ ++ ++   +   LA     + 
Sbjct: 106 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQN-SNNEASPIRRHIELALCHLAQHEVNA 197
             A         G +  + +++  G    +V          +       L  L+    N 
Sbjct: 166 ILA--------YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 217

Query: 198 KDMISGGALWELVRISRDCSREDIR 222
             ++  G +  L     D S+  ++
Sbjct: 218 PAIVEAGGMQALGLHLTDPSQRLVQ 242

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.5 bits (214), Expect = 1e-19
 Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 19/229 (8%)

Query: 19  QSNQEKIVEAGGLTSLL-MLLGSSEDETIHRVAAGAIANLA----MNETNQELIMTQGGI 73
             N+  + + GG+ +L+  +L + + E I   A  A+ +L       E  Q  +    G+
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 354

Query: 74  GLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQV 133
            ++            ++   G I NL         LR +G I  L+ ++   H D   + 
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414

Query: 134 ARGIANFAKCESRASTQ-------------GTKTGRSLLIDDGALPWIVQNSNNEASPIR 180
           + G       E     +                  R ++     +P  VQ   +    I+
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 474

Query: 181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229
           R     LC LAQ +  A+ + + GA   L  +      E + T A   L
Sbjct: 475 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVL 522

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 80.0 bits (197), Expect = 2e-17
 Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 31/216 (14%)

Query: 18  AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLL- 76
           A+  Q  +    GL  ++ LL       + +   G I NLA+   N   +  QG I  L 
Sbjct: 341 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 400

Query: 77  --------------------STTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIK 116
                                         + +    GA+  L  +   ++ +RG   I 
Sbjct: 401 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 460

Query: 117 ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA 176
             + ++     ++    A  +   A+ +              +  +GA   + +  ++  
Sbjct: 461 LFVQLLYSPIENIQRVAAGVLCELAQDKE---------AAEAIEAEGATAPLTELLHSRN 511

Query: 177 SPIRRHIELALCHLAQHEV-NAKDMISGGALWELVR 211
             +  +    L  +++ +  + K  +S      L R
Sbjct: 512 EGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 90.5 bits (224), Expect = 7e-21
 Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 11/211 (5%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGG-IGLLSTT 79
             +  +    +  L  LL + ED+ +   AA  +  L+  E ++  IM     +  +  T
Sbjct: 142 QDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 200

Query: 80  AANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIAN 139
             N  D +T R  +G + NL  + +  L +   GGI AL+ M+      VL      + N
Sbjct: 201 MQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260

Query: 140 FAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKD 199
                        +  +  +   G L  +V   N             L  LA     +K 
Sbjct: 261 LL--------LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312

Query: 200 MI-SGGALWELVRISRDCSREDIRTLAHRTL 229
           +I + G    LV I R  + E +     R L
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 88.6 bits (219), Expect = 2e-20
 Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 15/214 (7%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLS 77
           +  +  +  AGGL  ++ LL +  +     +    +  LA  N+ ++ +I+  GG   L 
Sbjct: 266 EGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 324

Query: 78  TTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGI 137
                    + L   +  +  L      +  +   GG++AL   +      ++      +
Sbjct: 325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

Query: 138 ANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNA 197
            N +   ++               +G L  +VQ   ++   +       L +L  +    
Sbjct: 385 RNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433

Query: 198 KDMI-SGGALWELVR-ISRDCSREDIRTLAHRTL 229
           K M+   G +  LVR + R   REDI   A   L
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 87.8 bits (217), Expect = 5e-20
 Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 11/202 (5%)

Query: 20  SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT 79
           S    +     +++++  + ++ D    R  +G + NL+ +      I   GGI  L   
Sbjct: 183 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPAL-VN 241

Query: 80  AANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
              +     L      + NL    +  ++ +R  GG++ ++ ++   +   LA     + 
Sbjct: 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQN-SNNEASPIRRHIELALCHLAQHEVNA 197
             A         G +  + +++  G    +V          +       L  L+    N 
Sbjct: 302 ILAY--------GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353

Query: 198 KDMISGGALWELVRISRDCSRE 219
             ++  G +  L     D S+ 
Sbjct: 354 PAIVEAGGMQALGLHLTDPSQR 375

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 79.3 bits (195), Expect = 4e-17
 Identities = 35/257 (13%), Positives = 77/257 (29%), Gaps = 33/257 (12%)

Query: 5   ILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ 64
            L  ++ + +D  A+  Q  +    GL  ++ LL       + +   G I NLA+   N 
Sbjct: 466 ALRHLTSRHQD--AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523

Query: 65  ELIMTQGGIGLL---------------------STTAANAEDPQTLRMVAGAIANLCGND 103
             +  QG I  L                               + +    GA+  L  + 
Sbjct: 524 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583

Query: 104 KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG 163
             ++ +RG   I   + ++     ++    A  +   A+ +              +  +G
Sbjct: 584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE---------AAEAIEAEG 634

Query: 164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEV-NAKDMISGGALWELVRISRDCSREDIR 222
           A   + +  ++    +  +    L  +++ +  + K  +S      L R       E   
Sbjct: 635 ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGD 694

Query: 223 TLAHRTLTSSPAFQAEM 239
                     P    + 
Sbjct: 695 LGLDIGAQGEPLGYRQD 711

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 69.7 bits (170), Expect = 6e-14
 Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 17/205 (8%)

Query: 18  AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNET-NQELIMTQGGIG-L 75
           + +  ++    G L +L+ LL  S+D  +   AAG ++NL  N   N+ ++   GGI  L
Sbjct: 388 SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 446

Query: 76  LSTTAANAEDPQTLRMVAGAIANLC----GNDKLQLKLRGEGGIKALLGMVRCGHPDVLA 131
           + T     +          A+ +L       +  Q  +R   G+  ++ ++       L 
Sbjct: 447 VRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 506

Query: 132 QVARG-IANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190
           +   G I N A C +           + L + GA+P +VQ         +R   +     
Sbjct: 507 KATVGLIRNLALCPAN---------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557

Query: 191 AQHEVNAKDMISGGALWELVRISRD 215
              E    + I       L  ++RD
Sbjct: 558 QFVEGVRMEEIVEACTGALHILARD 582

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 39/175 (22%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-ELIMTQGGIGLLSTT 79
             + +++AG L +L+ LL SS +E I + A  A++N+A     Q + ++  G +  L   
Sbjct: 88  QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146

Query: 80  AANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
            ++  + Q L+    A++N+  G ++    +   G + AL+ ++   +  +L +    ++
Sbjct: 147 LSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 205

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQH 193
           N A         G    +  + + GAL  + Q  ++E   I++  + AL  L  H
Sbjct: 206 NIAS--------GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 14/212 (6%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-ELIMTQGGIGLLSTT 79
             + +++AG L +L+ LL SS +E I + A  A++N+A     Q + ++  G +  L   
Sbjct: 46  QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL-VQ 103

Query: 80  AANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
             ++ + Q L+    A++N+  G ++    +   G + AL+ ++   +  +L +    ++
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
           N A         G       +ID GALP +VQ  ++    I +    AL ++A      K
Sbjct: 164 NIAS--------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215

Query: 199 DMIS-GGALWELVRISRDCSREDIRTLAHRTL 229
             +   GAL +L ++    + E I+  A   L
Sbjct: 216 QAVKEAGALEKLEQLQSHEN-EKIQKEAQEAL 246

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 38/208 (18%), Positives = 79/208 (37%), Gaps = 21/208 (10%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLA-MNETNQELIMTQGGI---- 73
           + +         L  +   L +S+D      A    + +        + ++  G +    
Sbjct: 2   RGSHHHHHHGSELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60

Query: 74  GLLSTTAANAEDPQTLRMVAGAIANL-CGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQ 132
            LLS+      + Q L+    A++N+  G ++    +   G + AL+ ++   +  +L +
Sbjct: 61  QLLSS-----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115

Query: 133 VARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192
               ++N A         G       +ID GALP +VQ  ++    I +    AL ++A 
Sbjct: 116 ALWALSNIAS--------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167

Query: 193 HEVNAKDMI-SGGALWELVRISRDCSRE 219
                   +   GAL  LV++    + +
Sbjct: 168 GGNEQIQAVIDAGALPALVQLLSSPNEQ 195

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 65.0 bits (159), Expect = 9e-13
 Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-ELIMTQGGIGLLS 77
               + +++AG L +L+ LL S  ++ + + A  A++N+A     Q + ++  G +  L 
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQIL-QEALWALSNIASGGNEQIQAVIDAGALPALV 186

Query: 78  TTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARG 136
               ++ + Q L+    A++N+  G ++ +  ++  G ++ L  +    +  +  +    
Sbjct: 187 -QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245

Query: 137 IANFAK 142
           +     
Sbjct: 246 LEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 11/165 (6%)

Query: 63  NQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGM 121
           +         +  + T   N++D Q         + +    ++    +   G + AL+ +
Sbjct: 4   SHHHHHHGSELPQM-TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL 62

Query: 122 VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181
           +   +  +L +    ++N A         G       +ID GALP +VQ  ++    I +
Sbjct: 63  LSSPNEQILQEALWALSNIAS--------GGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114

Query: 182 HIELALCHLAQHEVNAKDMI-SGGALWELVRISRDCSREDIRTLA 225
               AL ++A         +   GAL  LV++    + + ++   
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 82.8 bits (204), Expect = 6e-19
 Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 13/201 (6%)

Query: 3   IQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLA-MNE 61
              L  ++   E++    N     +  G+  L+     +    +   AA  I   +    
Sbjct: 58  EGALELLADLCENM---DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA 114

Query: 62  TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLG 120
             QE ++  G +  L                  AI+ L    +   L+     G   L+ 
Sbjct: 115 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 174

Query: 121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180
            ++     +  + A  + N           G    +  L   G +  +V     E SP  
Sbjct: 175 AMQQQVQKLKVKSAFLLQNLL--------VGHPEHKGTLCSMGMVQQLVALVRTEHSPFH 226

Query: 181 RHIELALCHLAQHEVNAKDMI 201
            H+  ALC L           
Sbjct: 227 EHVLGALCSLVTDFPQGVREC 247

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 82.0 bits (202), Expect = 1e-18
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTT 79
            QE+++  G L  LL LL     +T+   A  AI+ L    E      +   G  +L   
Sbjct: 116 IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR- 174

Query: 80  AANAEDPQTLRMVAGAIANLCGNDK-LQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
           A   +  +     A  + NL       +  L   G ++ L+ +VR  H      V   + 
Sbjct: 175 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC 234

Query: 139 NFAKCESRASTQGTKTGRSLL 159
           +      +   +  +    L 
Sbjct: 235 SLVTDFPQGVRECREPELGLE 255

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 70  QGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLG-MVRCGHPD 128
              +   +  A  A D Q        +A+LC N           G+  L+G  +  G   
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 129 VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASP-IRRHIELAL 187
           +  + A+ I   ++  +          +  ++  GAL  +++  + +A   +R     A+
Sbjct: 98  LRWRAAQLIGTCSQNVAAI--------QEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 149

Query: 188 CHLAQH-EVNAKDMISGGALWELVRISRD 215
             L +  E      +       L+R  + 
Sbjct: 150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 80.3 bits (198), Expect = 1e-17
 Identities = 35/228 (15%), Positives = 77/228 (33%), Gaps = 17/228 (7%)

Query: 1   MTIQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN 60
             +  L  I+  S   R     + +++   L  LL L       T+ R A  A++NL   
Sbjct: 126 QAVWALGNIAGDSTMCR-----DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180

Query: 61  ETNQ-ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKAL 118
           ++   E       + +LS       D   L     A++ L  G +     +   G  + L
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239

Query: 119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASP 178
           + ++      V++   R + N           G      ++++  AL  ++   ++    
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVT--------GDDIQTQVILNCSALQSLLHLLSSPKES 291

Query: 179 IRRHIELALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLA 225
           I++     + ++        + +I       L+ I +       +  A
Sbjct: 292 IKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 37/201 (18%), Positives = 69/201 (34%), Gaps = 14/201 (6%)

Query: 18  AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETN---QELIMTQGGIG 74
           AQ N  ++   G +TS ++ +  S+       A      L   E N    E+I T G + 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 75  LLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQV 133
                    E+       A  + N+  GN      +   G +   + ++     DV  Q 
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127

Query: 134 ARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASP-IRRHIELALCHLAQ 192
              + N A   +          R  ++D   LP ++Q  + +    + R+   AL +L +
Sbjct: 128 VWALGNIAGDSTMC--------RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179

Query: 193 HEVNAKDMIS-GGALWELVRI 212
            +    +       L  L  +
Sbjct: 180 GKSPPPEFAKVSPCLNVLSWL 200

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 12/211 (5%)

Query: 22  QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA 81
            E I   G +   +  L   E+ T+   +A  + N+A   + Q  I+ Q G   +     
Sbjct: 57  DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL 116

Query: 82  NAEDPQTLRMVAGAIANLCG-NDKLQLKLRGEGGIKALLGMVRCGHP-DVLAQVARGIAN 139
           ++E          A+ N+ G +   +  +     +  LL +    +   +       ++N
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176

Query: 140 FAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKD 199
             +        G             L  +        + +      AL +L+    +   
Sbjct: 177 LCR--------GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228

Query: 200 MI-SGGALWELVRISRDCSREDIRTLAHRTL 229
            +   G    LV +        + + A R +
Sbjct: 229 AVIDAGVCRRLVELLMHND-YKVVSPALRAV 258

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 26/187 (13%), Positives = 64/187 (34%), Gaps = 11/187 (5%)

Query: 20  SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLST 78
              + +++AG    L+ LL    D  +   A  A+ N+   ++   ++I+    +  L  
Sbjct: 225 DKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKLQLK-LRGEGGIKALLGMVRCGHPDVLAQVARGI 137
             ++       +     I+N+   ++ Q++ +       AL+ +++        + A  I
Sbjct: 284 LLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342

Query: 138 ANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNA 197
            N     S    +        L++ G +  +        S I +     L ++ +     
Sbjct: 343 TNATSGGSAEQIK-------YLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 395

Query: 198 KDMISGG 204
                 G
Sbjct: 396 AKRNGTG 402

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ--ELIMTQGGIGLL 76
           ++  + +++A    +L+ +L ++E     + AA AI N     + +  + ++  G I  L
Sbjct: 308 RAQIQTVIDANIFPALISILQTAEFR-TRKEAAWAITNATSGGSAEQIKYLVELGCIKPL 366

Query: 77  STTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCG 125
                   D + +++    + N+    + + K  G G       +    
Sbjct: 367 CDLL-TVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 39/175 (22%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-ELIMTQGGIGLLSTT 79
             + +++AG L +L+ LL SS +E I + A  A++N+A     Q + ++  G +  L   
Sbjct: 46  QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL-VQ 103

Query: 80  AANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
             ++ + Q L+    A++N+  G ++    +   G + AL+ ++   +  +L +    ++
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQH 193
           N A         G    +  + + GAL  + Q  ++E   I++  + AL  L  H
Sbjct: 164 NIAS--------GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 43/218 (19%), Positives = 88/218 (40%), Gaps = 22/218 (10%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLA-MNETNQELIMTQGGI---- 73
           + +         L  ++  L +S D+   + A   ++ +A       + ++  G +    
Sbjct: 2   RGSHHHHHHGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60

Query: 74  GLLSTTAANAEDPQTLRMVAGAIANL-CGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQ 132
            LLS+      + Q L+    A++N+  G ++    +   G + AL+ ++   +  +L +
Sbjct: 61  QLLSS-----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115

Query: 133 VARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192
               ++N A         G       +ID GALP +VQ  ++    I +    AL ++A 
Sbjct: 116 ALWALSNIAS--------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167

Query: 193 HEVNAKDMI-SGGALWELVRISRDCSREDIRTLAHRTL 229
                K  +   GAL +L ++    + E I+  A   L
Sbjct: 168 GGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEAL 204

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 78.5 bits (193), Expect = 6e-17
 Identities = 38/214 (17%), Positives = 85/214 (39%), Gaps = 11/214 (5%)

Query: 19  QSNQEKIV-EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM--NETNQELIMTQGGIGL 75
            +N+  +    G + +L+  L  SE E + +V A  + NL+   +  +++ +   G +  
Sbjct: 232 VANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290

Query: 76  LSTTAANAEDPQTLRMVAGAIANL---CGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQ 132
           L   A   +   TL+ V  A+ NL   C  +K  +    +G +  L+G +          
Sbjct: 291 LMECALEVKKESTLKSVLSALWNLSAHCTENKADI-CAVDGALAFLVGTLTYRSQTNTLA 349

Query: 133 VARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL-A 191
           +        +  S       +  R +L ++  L  ++Q+  + +  I  +    L +L A
Sbjct: 350 IIESGGGILRNVSSLIA-TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408

Query: 192 QHEVNAKDMISGGALWELVRISRDCSREDIRTLA 225
           ++  + + +   GA+  L  +      + I   +
Sbjct: 409 RNPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGS 441

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 31/191 (16%), Positives = 70/191 (36%), Gaps = 18/191 (9%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLL 76
            ++++ + E G + +L+      + E+  +    A+ NL+ +  E   ++    G +  L
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335

Query: 77  STTAANAEDPQTLRMV---AGAIANLC----GNDKLQLKLRGEGGIKALLGMVRCGHPDV 129
             T        TL ++    G + N+      N+  +  LR    ++ LL  ++     +
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395

Query: 130 LAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCH 189
           ++     + N +              +  L D GA+  +    +++   I      AL +
Sbjct: 396 VSNACGTLWNLSA--------RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

Query: 190 LAQ-HEVNAKD 199
           L        KD
Sbjct: 448 LMANRPAKYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 64.2 bits (156), Expect = 4e-12
 Identities = 38/255 (14%), Positives = 79/255 (30%), Gaps = 30/255 (11%)

Query: 14  EDIRAQSNQEK--IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQG 71
           E IRA                        +  E     A   +  L+ +E ++  +   G
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG 189

Query: 72  GIGLL----------STTAANAEDPQTLRMVAGAIANLCGND--KLQLKLRGEGGIKALL 119
           G+  +               +       R    A+ NL   D          +G ++AL+
Sbjct: 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 249

Query: 120 GMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN-SNNEASP 178
             ++    D+   +A  + N +      S       +  L + G++  +++     +   
Sbjct: 250 AQLKSESEDLQQVIASVLRNLSWRADVNS-------KKTLREVGSVKALMECALEVKKES 302

Query: 179 IRRHIELALCHLAQHEVNAKDMI--SGGA---LWELVRISRDCSREDIRTLAH---RTLT 230
             + +  AL +L+ H    K  I    GA   L   +      +   I        R ++
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

Query: 231 SSPAFQAEMRRLRID 245
           S  A   + R++  +
Sbjct: 363 SLIATNEDHRQILRE 377

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 30/237 (12%), Positives = 73/237 (30%), Gaps = 11/237 (4%)

Query: 3   IQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM--- 59
           IQ+L+     S  +      ++        +L  ++ S  D+   R     +  L     
Sbjct: 76  IQLLHGNDKDSVLLGNSRGSKEARARA-SAALHNIIHSQPDDKRGRREIRVLHLLEQIRA 134

Query: 60  -NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKAL 118
             ET  E                 A     +      +  L  +++ +  +   GG++A+
Sbjct: 135 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI 194

Query: 119 LGMVRCGHPDVLAQVARGIANFAKCESRA----STQGTKTGRSLLIDDGALPWIVQNSNN 174
             +++                  +    A    +        +L    G +  +V    +
Sbjct: 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 254

Query: 175 EASPIRRHIELALCHLA--QHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229
           E+  +++ I   L +L+      + K +   G++  L+  + +  +E         L
Sbjct: 255 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 78.5 bits (192), Expect = 6e-17
 Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 16/204 (7%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM--NETNQELIMTQGGIGLL 76
              +  + +  G+  L+ LL     + +H  A GA+ N++   ++ N+  I    G+  L
Sbjct: 80  DKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 77  STTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGG-------IKALLGMVRCGHPDV 129
                 A D     ++ G + NL  +D +++++            I    G  R  + D 
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC 198

Query: 130 LA---QVARGIANFAKCESRASTQGTKTGRSLLIDDG---ALPWIVQNSNNEASPIRRHI 183
                +    + N A C    S++ ++  R L   DG   AL +IVQ    +     + +
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 184 ELALCHLAQHEVNAKDMISGGALW 207
           E  +C L          I     +
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERY 282

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 64.6 bits (156), Expect = 4e-12
 Identities = 38/194 (19%), Positives = 80/194 (41%), Gaps = 26/194 (13%)

Query: 18  AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLL- 76
            +  +  + +   L+++  LL ++E E + + A+GA+ NLA++  N+ELI       L+ 
Sbjct: 344 GRYIRSALRQEKALSAIADLL-TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVK 402

Query: 77  -----STTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVL 130
                   ++      T+  +   I  +   N +   KLR   GI+ L+ + + G+    
Sbjct: 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEK 462

Query: 131 AQ-VARGI----------------ANFAKCESRAS-TQGTKTGRSLLIDDGALPWIVQNS 172
               A  +                  + K + + +    +++  S   DD  LP I +N 
Sbjct: 463 EVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQ 522

Query: 173 NNEASPIRRHIELA 186
            ++  P R  I+++
Sbjct: 523 KSDKKPDREEIQMS 536

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 58.4 bits (140), Expect = 4e-10
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 24/198 (12%)

Query: 58  AMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL-----QLKLRGE 112
                  EL+     + +  +    ++ P  L   AGAI NLC          +  LR E
Sbjct: 295 TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE 354

Query: 113 GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQ-- 170
             + A+  ++   H  V+   +  + N A                 LI   A+P +V+  
Sbjct: 355 KALSAIADLLTNEHERVVKAASGALRNLAVDARNKE----------LIGKHAIPNLVKNL 404

Query: 171 ---NSNNEASPIRRHIELALCHL----AQHEVNAKDMISGGALWELVRISRDCSREDIRT 223
                N+  +     +   L  +    A++   AK +     + +LV I++  +R +   
Sbjct: 405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEV 464

Query: 224 LAHRTLTSSPAFQAEMRR 241
            A   +  +     E+R+
Sbjct: 465 RAAALVLQTIWGYKELRK 482

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 16  IRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLA-MNETNQELIMTQGGIG 74
           +R             L  ++ +L     + +   AA  + +L   N+  +  +    GI 
Sbjct: 35  LRKGGPPPPNWRQPELPEVIAML-GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIP 93

Query: 75  LLSTTAANAEDPQTLRMVAGAIANL--CGNDKLQLKLRGEGGIKALLGMVRCGH-PDVLA 131
           +L     +    +      GA+ N+    +   ++ ++   G+ AL+ ++R     D+  
Sbjct: 94  VL-VGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTE 152

Query: 132 QVARGIANFAKCES 145
            +   + N +  +S
Sbjct: 153 VITGTLWNLSSHDS 166

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 54.6 bits (130), Expect = 8e-09
 Identities = 22/160 (13%), Positives = 52/160 (32%), Gaps = 10/160 (6%)

Query: 47  HRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKL 105
           H   + A  +             Q  +  +                A  + +LC  NDK+
Sbjct: 24  HERGSLASLDSLRKGGPPPPNWRQPELPEV-IAMLGFRLDAVKSNAAAYLQHLCYRNDKV 82

Query: 106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL 165
           +  +R   GI  L+G++     +V       + N +    + +       +  + +   +
Sbjct: 83  KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN-------KIAIKNCDGV 135

Query: 166 PWIVQN-SNNEASPIRRHIELALCHLAQHEVNAKDMISGG 204
           P +V+         +   I   L +L+ H+    +++   
Sbjct: 136 PALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA 175

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 31/247 (12%), Positives = 71/247 (28%), Gaps = 39/247 (15%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLS- 77
           Q N+  I    G+ +L+ LL  + D  +  V  G + NL+ +++ +  I+      L   
Sbjct: 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDE 182

Query: 78  ---------------TTAANAEDPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLG 120
                              + E    L   AG + N+    ++  +     +G + AL+ 
Sbjct: 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242

Query: 121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180
           +V            +        +S+         R+L         + +          
Sbjct: 243 IV------------QAEIGQKDSDSKLVENCVCLLRNL------SYQVHREIPQAERYQE 284

Query: 181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIR---TLAHRTLTSSPAFQA 237
               +A           + +     +   + + ++     I      A + L +      
Sbjct: 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344

Query: 238 EMRRLRI 244
              R  +
Sbjct: 345 RYIRSAL 351

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 15/122 (12%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 112 EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN 171
           +  +  ++ M+      V +  A  + +      +         ++ +     +P +V  
Sbjct: 47  QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV--------KTDVRKLKGIPVLVGL 98

Query: 172 SNNEASPIRRHIELALCHLA--QHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229
            ++    +      AL +++  + + N   + +   +  LVR+ R     D+  +   TL
Sbjct: 99  LDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTL 158

Query: 230 TS 231
            +
Sbjct: 159 WN 160

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 40/256 (15%), Positives = 85/256 (33%), Gaps = 32/256 (12%)

Query: 14  EDIRAQSNQEK---IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQ 70
           E IRA              G+      + +  +      A   +  L+ +E ++  +   
Sbjct: 14  EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEH-QICPAVCVLMKLSFDEEHRHAMNEL 72

Query: 71  GGIGLL----------STTAANAEDPQTLRMVAGAIANLCGND--KLQLKLRGEGGIKAL 118
           GG+  +               +       R    A+ NL   D          +G ++AL
Sbjct: 73  GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 132

Query: 119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN-SNNEAS 177
           +  ++    D+   +A  + N +      S       +  L + G++  +++     +  
Sbjct: 133 VAQLKSESEDLQQVIASVLRNLSWRADVNS-------KKTLREVGSVKALMECALEVKKE 185

Query: 178 PIRRHIELALCHLAQHEVNAKDMIS--GGALWELVRISRDCSREDIRTLAH------RTL 229
              + +  AL +L+ H    K  I    GAL  LV      S+ +   +        R +
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245

Query: 230 TSSPAFQAEMRRLRID 245
           +S  A   + R++  +
Sbjct: 246 SSLIATNEDHRQILRE 261

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 33/199 (16%), Positives = 73/199 (36%), Gaps = 21/199 (10%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETN--QELIMTQGGIGLLST 78
           +++ + E G + +L+      + E+  +    A+ NL+ + T    ++    G +  L  
Sbjct: 162 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 221

Query: 79  TAANAEDPQTLRMV---AGAIANLC----GNDKLQLKLRGEGGIKALLGMVRCGHPDVLA 131
           T        TL ++    G + N+      N+  +  LR    ++ LL  ++     +++
Sbjct: 222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281

Query: 132 QVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLA 191
                + N +              +  L D GA+  +    +++   I      AL +L 
Sbjct: 282 NACGTLWNLSA--------RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

Query: 192 ----QHEVNAKDMISGGAL 206
                   +A  M  G +L
Sbjct: 334 ANRPAKYKDANIMSPGSSL 352

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLS 77
           + +++ + E   L +LL  L  S   TI   A G + NL+  N  +QE +   G + +L 
Sbjct: 253 EDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML- 310

Query: 78  TTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR 110
               +++        A A+ NL  N   + K  
Sbjct: 311 KNLIHSKHKMIAMGSAAALRNLMANRPAKYKDA 343

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 15/200 (7%)

Query: 3   IQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNET 62
           I  L  ++  S D R       +++   +  +L L  +S   ++ R A   ++NL   + 
Sbjct: 194 IWALGNVAGDSTDYRDY-----VLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKK 247

Query: 63  NQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGE-GGIKALLGM 121
            Q                  + D +TL     AI+ L    +  ++   +    K L+ +
Sbjct: 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307

Query: 122 VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR 181
           +      V     R + N           G      ++I+ G LP +    ++    I++
Sbjct: 308 LSHESTLVQTPALRAVGNIV--------TGNDLQTQVVINAGVLPALRLLLSSPKENIKK 359

Query: 182 HIELALCHLAQHEVNAKDMI 201
                + ++          +
Sbjct: 360 EACWTISNITAGNTEQIQAV 379

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 13/198 (6%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ--ELIMTQGGIGLL 76
              Q        L  +   L +S+D      A      +   E     ++++  G +  L
Sbjct: 77  ADQQFYSQLQQELPQMTQQL-NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRL 135

Query: 77  STTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVAR 135
                  +        A A+ N+  G       +     +   + ++  G  +V  Q   
Sbjct: 136 VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIW 195

Query: 136 GIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEV 195
            + N A          +   R  ++   A+  I+   N+    + R     L +L + + 
Sbjct: 196 ALGNVAG--------DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247

Query: 196 NAKDMI-SGGALWELVRI 212
              D      AL  L ++
Sbjct: 248 PQPDWSVVSQALPTLAKL 265

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 19/191 (9%)

Query: 17  RAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGG---- 72
           R +  Q            L  L  S D      A  AI+ L+         +        
Sbjct: 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303

Query: 73  -IGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVL 130
            + LLS      E          A+ N+  GND     +   G + AL  ++     ++ 
Sbjct: 304 LVELLSH-----ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIK 358

Query: 131 AQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190
            +    I+N           G       +ID   +P +V+         ++    A+ + 
Sbjct: 359 KEACWTISNIT--------AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410

Query: 191 AQHEVNAKDMI 201
           +   +   D+I
Sbjct: 411 SSGGLQRPDII 421

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 70.4 bits (172), Expect = 3e-14
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 16/218 (7%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           Q   + I+ AG +   +  LG ++   I   +A A+ N+A   + Q   +  GG      
Sbjct: 90  QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI 149

Query: 79  TAANAEDPQTLRMVAGAIANLCG-NDKLQLKLRGEGGIKALLGMVRCGHPD-----VLAQ 132
           +   +           A+ N+ G     +  +   G I  LL ++            L  
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209

Query: 133 VARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ 192
           +   ++N  + ++ A          L   +  LP +V+  ++    +      A+ +L  
Sbjct: 210 LTWTLSNLCRNKNPA--------PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261

Query: 193 HEVNAKDMI-SGGALWELVRISRDCSREDIRTLAHRTL 229
                 +M+   G + +LV++        I T A R +
Sbjct: 262 GPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAI 298

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 69.7 bits (170), Expect = 7e-14
 Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 20/234 (8%)

Query: 3   IQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIH----RVAAGAIANLA 58
           +  L  I+           ++ +++ G +  LL LL   +  T+     R     ++NL 
Sbjct: 164 VWALGNIAGDGSA-----FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218

Query: 59  MNETNQ-ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIK 116
            N+     L   +  +  L     +  DP+ L     AI+ L  G ++    +  +G + 
Sbjct: 219 RNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVP 277

Query: 117 ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA 176
            L+ ++      ++    R I N           GT      +ID GAL        N  
Sbjct: 278 QLVKLLGATELPIVTPALRAIGNIV--------TGTDEQTQKVIDAGALAVFPSLLTNPK 329

Query: 177 SPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT 230
           + I++     + ++     +    +    L   +      +    +  A   +T
Sbjct: 330 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 67.7 bits (165), Expect = 3e-13
 Identities = 27/204 (13%), Positives = 70/204 (34%), Gaps = 13/204 (6%)

Query: 13  SEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLA-MNETNQELIMTQG 71
           S   R ++    +     +   L+ L    D  +   +  AI+ L        E+++ +G
Sbjct: 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG 274

Query: 72  GIGLLSTTAANAEDPQTLRMVAGAIANL-CGNDKLQLKLRGEGGIKALLGMVRCGHPDVL 130
            +  L      A +   +     AI N+  G D+   K+   G +     ++     ++ 
Sbjct: 275 VVPQL-VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333

Query: 131 AQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL 190
            +    ++N           G +     +++ G +P++V   +      ++    A+ + 
Sbjct: 334 KEATWTMSNITA--------GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385

Query: 191 AQHEVN--AKDMISGGALWELVRI 212
                      ++  G +  L+ +
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNL 409

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 18/222 (8%)

Query: 7   NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ-- 64
           +  +   +   A     +      +  ++  + +S +      A  A   L   E     
Sbjct: 35  DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPI 93

Query: 65  ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR 123
           + I+  G I    +     +        A A+ N+  G  +    +   G I A + ++ 
Sbjct: 94  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153

Query: 124 CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQ-----NSNNEASP 178
             H  +  Q    + N A              R L+I  GA+  ++      + +  A  
Sbjct: 154 SPHAHISEQAVWALGNIA--------GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205

Query: 179 IRRHIELALCHLAQHEVNAKDMIS-GGALWELVRISRDCSRE 219
             R++   L +L +++  A  + +    L  LVR+      E
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 61.9 bits (150), Expect = 8e-12
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 16/133 (12%)

Query: 16  IRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGL 75
                N+ ++ E  G+  LL +L  + D    +   G + NL+ N+  + L++T+  + L
Sbjct: 81  FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTL 140

Query: 76  L--------------STTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGG-IKALL 119
                             A    D      V G + N+       +  +R   G I +L+
Sbjct: 141 TENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLV 200

Query: 120 GMVRCGHPDVLAQ 132
             VR    D    
Sbjct: 201 HYVRGTIADYQPD 213

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTT 79
            ++++ +  G+  LL LL   ++E + R   GA+ NL   +  N+  +    G+  L   
Sbjct: 44  ARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQV 102

Query: 80  AANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMV 122
                D +T + + G + NL  NDKL+  +     +  L   +
Sbjct: 103 LKQTRDLETKKQITGLLWNLSSNDKLKNLMI-TEALLTLTENI 144

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 12/195 (6%)

Query: 36  MLLGSSEDETIHRVAAGAIANLA-MNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAG 94
           ML       +    AA  I +        ++ +    GI  L       ++    R V G
Sbjct: 16  MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKL-LQLLKVQNEDVQRAVCG 74

Query: 95  AIANLC-GNDKLQLKLRGEGGIKALLGMVRCGH-PDVLAQVARGIANFAKCES---RAST 149
           A+ NL   ++  +L++    G+  LL +++     +   Q+   + N +  +       T
Sbjct: 75  ALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT 134

Query: 150 QGTKTGRSLLIDDGALPWIVQNSNNEASP---IRRHIELALCHLAQHEVNAKDMI--SGG 204
           +   T    +I   +                 I  ++   L +++    + +  +    G
Sbjct: 135 EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDG 194

Query: 205 ALWELVRISRDCSRE 219
            +  LV   R    +
Sbjct: 195 LIDSLVHYVRGTIAD 209

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 10/164 (6%)

Query: 75  LLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQV 133
            +S   A+   P  +   A  I + C    + + ++    GI  LL +++  + DV   V
Sbjct: 13  AVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAV 72

Query: 134 ARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN-SNNEASPIRRHIELALCHLAQ 192
              + N                +  + +   +P ++Q          ++ I   L +L+ 
Sbjct: 73  CGALRNLVF--------EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 193 HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQ 236
           ++     MI+   L     I    S                   
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 63.3 bits (153), Expect = 9e-12
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 11/178 (6%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST 78
           +S +++I++  G++ +   L   +   + R AA  + NL M+E   ++            
Sbjct: 613 ESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA 671

Query: 79  TAANAEDPQTLRMVAGAIANLCGNDKL--QLKLRGEGGIKALLGMVRCGHPDVLAQVARG 136
                ED +T    AGA+A +        +  L     +  L  ++    P V  +    
Sbjct: 672 LLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731

Query: 137 IANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE 194
           I N                   L +   +  +            +  E+A   LA  E
Sbjct: 732 ILNMINAGEEI--------AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 60.2 bits (145), Expect = 1e-10
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 13/236 (5%)

Query: 14  EDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGI 73
           +D+   + +  ++   G+T+ L  L  +E      + A  +  +   +  +  ++ +GG+
Sbjct: 479 DDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGV 538

Query: 74  GLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLA-- 131
             L    A     +  R    A+A +      ++   G+  +  +  ++     D  A  
Sbjct: 539 KAL-LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 132 --QVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCH 189
             +    + N A              R  +I +  +  I      +   + R     LC+
Sbjct: 598 NFESLMALTNLASMNESV--------RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649

Query: 190 LAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRID 245
           L   E   K         + + +  +   E+  T     L    +   +     + 
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILA 705

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 61.0 bits (147), Expect = 4e-11
 Identities = 26/239 (10%), Positives = 62/239 (25%), Gaps = 27/239 (11%)

Query: 6   LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQE 65
           L  +  +S       N+ +     G+   + LL  + +  I +   G + NL+  +  +E
Sbjct: 68  LRNLVFRSTT-----NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 66  LIMTQ--------------GGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRG 111
            ++                G     S  +    DP+      G + NL   D  +  +R 
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 112 EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN 171
             G+   L               + + N        S +      +              
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 172 SNNEASPIR--------RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIR 222
             +               + +  L     +   +  +    A+   + +     ++   
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 60.2 bits (145), Expect = 9e-11
 Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 15/221 (6%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTT 79
            ++++ + GG+  L+ LL  S ++ + + AAGA+ NL   + TN+     Q GI    + 
Sbjct: 36  AKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94

Query: 80  AANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIAN 139
                + +  + + G + NL   D+L+ +L     +  L   V           +     
Sbjct: 95  LRRTGNAEIQKQLTGLLWNLSSTDELKEEL-IADALPVLADRVIIPFSGWCDGNSNMSRE 153

Query: 140 FAKCESRASTQGT-------KTGRSLLIDDGALP----WIVQNSNNEASPIRRHIELALC 188
               E   +  G          GR  + +   L       VQN    +    + +E  +C
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213

Query: 189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL 229
            +  +     D        +L   +R+   E   T      
Sbjct: 214 -VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNK 253

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 57.9 bits (139), Expect = 6e-10
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 9   ISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIM 68
           ++     + +  +Q   ++  GL  +  LL  S +  + R  A  ++N++ +     ++ 
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPLLHRVMG 369

Query: 69  TQGGIGLL----STTAANAEDPQTLRMVAGAIANLCGNDKLQLK-LRGEGGIKALLGMVR 123
            Q    +     S T   +     L      + NL  +     K       +  ++ + R
Sbjct: 370 NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429

Query: 124 CGHPDVLAQVARG 136
                  A+ AR 
Sbjct: 430 SSASPKAAEAARL 442

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 36/203 (17%), Positives = 77/203 (37%), Gaps = 12/203 (5%)

Query: 28  AGGLTSLLMLLGSSEDETIHRVAAGAIANLA-MNETNQELIMTQGGIGLLSTTAANAEDP 86
              +   +  L SS+DE    + A  I +    +E+ ++ +   GGI  L      + + 
Sbjct: 1   GLTIPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKL-VDLLRSPNQ 58

Query: 87  QTLRMVAGAIANL-CGNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCE 144
              +  AGA+ NL   +   +L+ R + GI+  + ++R  G+ ++  Q+   + N +  +
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 145 SRASTQGTKTGRSL--LIDDGALPWIVQNSNNEASP----IRRHIELALCHLAQHEVNAK 198
                        L   +      W   NSN         +  +    L +L+  +   +
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 199 DMIS-GGALWELVRISRDCSRED 220
            M +  G +  L+   ++C    
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAAS 201

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 52.1 bits (124), Expect = 5e-08
 Identities = 30/200 (15%), Positives = 63/200 (31%), Gaps = 11/200 (5%)

Query: 39  GSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIAN 98
            +  D+ ++      +     N      +     I         ++   TL   AGA+ N
Sbjct: 251 SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310

Query: 99  LCGNDKLQ------LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT 152
           L  +  L       L    E G+  +  +++ G+ DV+   A  ++N ++        G 
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN 370

Query: 153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVR 211
           +    +      L      + + +  I       + +L       AK   S   L  ++ 
Sbjct: 371 QVFPEVT----RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN 426

Query: 212 ISRDCSREDIRTLAHRTLTS 231
           + R  +       A   L+ 
Sbjct: 427 LCRSSASPKAAEAARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 23/228 (10%)

Query: 18  AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLS 77
           A + ++ +    GL   LM           R    ++ N      N    +         
Sbjct: 173 ADAGRQTMRNYSGLIDSLMAY-VQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231

Query: 78  TTAANAEDPQTLRMVAGA----------------IANLCGNDKLQLKLRGEGGIKALLGM 121
               NA +  T +   G                 +     N K    L     I+  L +
Sbjct: 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291

Query: 122 VRCGHPDVLAQVARG-IANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180
           +     D   +   G + N    +   S+      + + + +  LP I +   +  S + 
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSG---MSQLIGLKEKGLPQIARLLQSGNSDVV 348

Query: 181 RHIELALCHLAQHEVNAKDMISGG--ALWELVRISRDCSREDIRTLAH 226
           R     L ++++H +  + M +     +  L+      +      L+ 
Sbjct: 349 RSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 27/202 (13%), Positives = 64/202 (31%), Gaps = 23/202 (11%)

Query: 12  KSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQG 71
            +++     N++ I+    L S L     +      +     I N+  ++     +  QG
Sbjct: 440 AAKEDILLFNEKYILRTE-LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQG 498

Query: 72  GIG-LLSTTAANAEDPQTLRMVAG-AIANLCGNDKLQL---KLRGEGGIKALLGMVRCGH 126
            +  +L   A   +  + +R++   A+  +       L   K      I  L  ++    
Sbjct: 499 AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRST 558

Query: 127 PDVLAQVA--------------RGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS 172
           P     +                 + N A   S  ++ G +  + ++        I    
Sbjct: 559 PVDDNPLHNDEQIKLTDNYEALLALTNLA---SSETSDGEEVCKHIVSTKVYWSTIENLM 615

Query: 173 NNEASPIRRHIELALCHLAQHE 194
            +E  P++R     + ++  H 
Sbjct: 616 LDENVPLQRSTLELISNMMSHP 637

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.94
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.94
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.93
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.93
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.93
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.93
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.92
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.91
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.91
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.9
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.89
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.88
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.88
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.87
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.87
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.85
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.81
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.79
3grl_A	651	General vesicular transport factor P115; vesicle t	99.4
3grl_A	651	General vesicular transport factor P115; vesicle t	99.36
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.36
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.23
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.22
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.21
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.17
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.08
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.02
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.02
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.67
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.64
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.51
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.5
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.47
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.31
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.29
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.23
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.23
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.21
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.15
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.12
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.09
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.06
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.02
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.99
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.88
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.83
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.81
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.78
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.76
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.75
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.7
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.65
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.62
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.55
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.52
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.36
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.35
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.34
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.96
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.92
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.65
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.65
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.24
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.97
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.91
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.54
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.46
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.42
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.11
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.04
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.92
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.61
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.15
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.95
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.07
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	92.9
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	92.59
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.0
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	91.81
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	91.81
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.89
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	90.54
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.35
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	89.56
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	89.21
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	88.82
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	88.12
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	86.62
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	86.61
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	86.37
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	85.79
2x1g_F	971	Cadmus; transport protein, developmental protein,	85.17
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	84.81
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	84.36
3gae_A	253	Protein DOA1; UFD3, CDC48, armadillo repeat, nucle	82.5
2x19_B	963	Importin-13; nuclear transport, protein transport;	81.96
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	81.45

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=4.6e-30  Score=221.72  Aligned_cols=226  Identities=16%  Similarity=0.176  Sum_probs=193.7

Q ss_pred             hhhhHHhHhhccccc-cHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHh
Q 025930            6 LNTISVKSEDIRAQS-NQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAA   81 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~   81 (246)
                      .++.+.+.|++..++ +|..+... |.||+|+++|+++ ++.+++.|+++|+||+.+  +++|..+++.|++|.|+.++.
T Consensus       102 ~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~  180 (354)
T 3nmw_A          102 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL  180 (354)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh
Confidence            467889999997765 77777655 5599999999986 888999999999999974  679999999999999999865


Q ss_pred             cCCChHHHHHHHHHHHHhhC-CchhHHHHH-hcCCHHHHHHHhcCCCH----HHHHHHHHHHHHhhcccccccccCChhh
Q 025930           82 NAEDPQTLRMVAGAIANLCG-NDKLQLKLR-GEGGIKALLGMVRCGHP----DVLAQVARGIANFAKCESRASTQGTKTG  155 (246)
Q Consensus        82 ~~~~~~~~~~a~~aL~~L~~-~~~~~~~l~-~~g~i~~L~~ll~~~~~----~~~~~a~~~L~nL~~~~~~~~~~~~~~~  155 (246)
                      +..++.+++.++++|+||+. +++++..++ ..|+++.|+.+|.++++    ++++.|+++|+||+.+-     .++++.
T Consensus       181 ~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~-----a~~~~~  255 (354)
T 3nmw_A          181 EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI-----ATNEDH  255 (354)
T ss_dssp             HCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH-----TTCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc-----cCCHHH
Confidence            44678899999999999997 778988888 78999999999987654    59999999999999410     035799


Q ss_pred             hHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          156 RSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       156 ~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      ++.+.+.|++|.|+.+|.+++.++++.|+++|+||+. ++++++.+++.|+++.|+++++++ ++.+++.|.++|.++..
T Consensus       256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999995 888999999999999999999855 45678888888876555


Q ss_pred             HHHH
Q 025930          235 FQAE  238 (246)
Q Consensus       235 ~~~e  238 (246)
                      ..++
T Consensus       335 ~~~~  338 (354)
T 3nmw_A          335 NRPA  338 (354)
T ss_dssp             TCCG
T ss_pred             CCHH
Confidence            4433

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.2e-29  Score=216.41  Aligned_cols=231  Identities=21%  Similarity=0.239  Sum_probs=197.3

Q ss_pred             ehhhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC----------CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCc
Q 025930            4 QILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS----------EDETIHRVAAGAIANLAMNE-TNQELIMTQGG   72 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~----------~~~~~~~~a~~~L~~la~~~-~~~~~i~~~g~   72 (246)
                      |+-++++.+.|++.++++|+.|++.|++++|+.+|...          .++.+++.|+++|.||+.++ +++..+.+.+|
T Consensus        48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G  127 (354)
T 3nmw_A           48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  127 (354)
T ss_dssp             THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence            44578999999999999999999999999999999521          23678999999999999875 48888866655


Q ss_pred             -HHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhccccccc
Q 025930           73 -IGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRAS  148 (246)
Q Consensus        73 -i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~  148 (246)
                       +|.|+.++++ +++++++.|+++|+||+.  +++++..+++.|++++|+++| +++++++++.++++|+||+.      
T Consensus       128 aIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~------  200 (354)
T 3nmw_A          128 CMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA------  200 (354)
T ss_dssp             HHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT------
T ss_pred             cHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc------
Confidence             9999999998 679999999999999995  478999999999999999975 67789999999999999995      


Q ss_pred             ccCChhhhHHHH-hCCChHHHHHcccCCCh----hHHHHHHHHHHHhcc----CchhHHHHHhCCcHHHHHHHHhcCCHH
Q 025930          149 TQGTKTGRSLLI-DDGALPWIVQNSNNEAS----PIRRHIELALCHLAQ----HEVNAKDMISGGALWELVRISRDCSRE  219 (246)
Q Consensus       149 ~~~~~~~~~~l~-~~g~i~~Lv~ll~~~~~----~v~~~a~~aL~~La~----~~~~~~~i~~~g~i~~L~~ll~~~~~~  219 (246)
                        ..++++..+. ..|++|.|+.++..+++    ++++.|+++|.+|+.    ++++++.++++|+++.|++++++++ .
T Consensus       201 --~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~  277 (354)
T 3nmw_A          201 --HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-L  277 (354)
T ss_dssp             --TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-H
T ss_pred             --cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-h
Confidence              2467888887 79999999999987755    599999999999985    8889999999999999999999655 4


Q ss_pred             HHHHHHHHHHcc----ChhHHHHHHHhhh
Q 025930          220 DIRTLAHRTLTS----SPAFQAEMRRLRI  244 (246)
Q Consensus       220 ~~~~~A~~~L~~----~~~~~~e~~~~~~  244 (246)
                      .+++.|.++|.+    .++.+..+.+.|+
T Consensus       278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~  306 (354)
T 3nmw_A          278 TIVSNACGTLWNLSARNPKDQEALWDMGA  306 (354)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence            467777777764    5667777766664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=2.7e-28  Score=216.79  Aligned_cols=231  Identities=21%  Similarity=0.238  Sum_probs=196.5

Q ss_pred             ehhhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcC----------CCCHHHHHHHHHHHHHhcCCcc-hHHHHHhcCc
Q 025930            4 QILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGS----------SEDETIHRVAAGAIANLAMNET-NQELIMTQGG   72 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~----------~~~~~~~~~a~~~L~~la~~~~-~~~~i~~~g~   72 (246)
                      |+-++++.+.|++.++++|+.|++.|++++|+.+|..          ..++.+++.|+++|.||+.+++ ++..+.+.+|
T Consensus       164 ~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          164 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             TTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            3448899999999999999999999999999999952          1246789999999999998754 6777766555


Q ss_pred             -HHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhccccccc
Q 025930           73 -IGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRAS  148 (246)
Q Consensus        73 -i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~  148 (246)
                       +|.|+.++++ +++++++.|+++|+||+.  +++++..+++.|++++|+.+| +++++++++.++++|+||+.      
T Consensus       244 aIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~------  316 (458)
T 3nmz_A          244 CMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA------  316 (458)
T ss_dssp             HHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH------
T ss_pred             cHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc------
Confidence             9999999997 679999999999999995  478999999999999999975 56788999999999999995      


Q ss_pred             ccCChhhhHHHH-hCCChHHHHHcccCCCh----hHHHHHHHHHHHhcc----CchhHHHHHhCCcHHHHHHHHhcCCHH
Q 025930          149 TQGTKTGRSLLI-DDGALPWIVQNSNNEAS----PIRRHIELALCHLAQ----HEVNAKDMISGGALWELVRISRDCSRE  219 (246)
Q Consensus       149 ~~~~~~~~~~l~-~~g~i~~Lv~ll~~~~~----~v~~~a~~aL~~La~----~~~~~~~i~~~g~i~~L~~ll~~~~~~  219 (246)
                        ..++++..+. ..|++|.|+.++..+++    ++++.|+++|.||+.    ++++++.++++|+++.|+.++++++. 
T Consensus       317 --~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~-  393 (458)
T 3nmz_A          317 --HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL-  393 (458)
T ss_dssp             --HCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCH-
T ss_pred             --CCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCCh-
Confidence              2357788887 79999999999987755    499999999999984    88899999999999999999996554 


Q ss_pred             HHHHHHHHHHcc----ChhHHHHHHHhhh
Q 025930          220 DIRTLAHRTLTS----SPAFQAEMRRLRI  244 (246)
Q Consensus       220 ~~~~~A~~~L~~----~~~~~~e~~~~~~  244 (246)
                      .+++.|.++|.+    .++.+.++.+.|+
T Consensus       394 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~  422 (458)
T 3nmz_A          394 TIVSNACGTLWNLSARNPKDQEALWDMGA  422 (458)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            467777777764    5777777777664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=217.99  Aligned_cols=222  Identities=16%  Similarity=0.174  Sum_probs=191.4

Q ss_pred             hhhhhHHhHhhccccc-cHHHHHH-hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHH
Q 025930            5 ILNTISVKSEDIRAQS-NQEKIVE-AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         5 ~~~~~~~~~~~~~~~~-~~~~i~~-~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll   80 (246)
                      ..++.+.+.|++..++ +|..+.. .|.||+|+++|+++ ++.++..|+++|+||+.+  +++|..+++.|+++.|+.++
T Consensus       217 ~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL  295 (458)
T 3nmz_A          217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA  295 (458)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence            3467899999998766 6666655 45599999999986 888999999999999974  67999999999999999986


Q ss_pred             hcCCChHHHHHHHHHHHHhhC-CchhHHHHH-hcCCHHHHHHHhcCCCH----HHHHHHHHHHHHhhcccccccccCChh
Q 025930           81 ANAEDPQTLRMVAGAIANLCG-NDKLQLKLR-GEGGIKALLGMVRCGHP----DVLAQVARGIANFAKCESRASTQGTKT  154 (246)
Q Consensus        81 ~~~~~~~~~~~a~~aL~~L~~-~~~~~~~l~-~~g~i~~L~~ll~~~~~----~~~~~a~~~L~nL~~~~~~~~~~~~~~  154 (246)
                      .+..++.+++.++++|+||+. +++++..++ ..|+++.|+.+|.++++    ++++.|+++|+||+.+-     .++++
T Consensus       296 l~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~-----a~~~~  370 (458)
T 3nmz_A          296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI-----ATNED  370 (458)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH-----TTCHH
T ss_pred             hcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc-----cCCHH
Confidence            554678899999999999997 888998888 79999999999987654    58999999999999410     03579


Q ss_pred             hhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          155 GRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       155 ~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      .++.+.+.|++|.|+.+|.+++.++++.|+++|+||+. +++++..+++.|+++.|+.++++. +..+++.|.++|.++.
T Consensus       371 ~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~  449 (458)
T 3nmz_A          371 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLM  449 (458)
T ss_dssp             HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999995 889999999999999999999854 5567888888887643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=6.7e-27  Score=191.15  Aligned_cols=218  Identities=24%  Similarity=0.379  Sum_probs=197.8

Q ss_pred             hhhhHHhHhhcccc-ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIRAQ-SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++.+.+++... +++..+++.|+++.|+++|+++ ++.++..|+.+|++++.+ ++++..+.+.|+++.|+.++++ 
T Consensus        20 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-   97 (252)
T 4hxt_A           20 KEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-   97 (252)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-
Confidence            45678888887655 4999999999999999999996 788999999999999988 8899999999999999999998 


Q ss_pred             CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           84 EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      +++.++..++++|.+++ .+++++..+.+.|+++.|+.+++++++.++..++.+|+|++.        +.+..++.+.+.
T Consensus        98 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~~  169 (252)
T 4hxt_A           98 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--------GPDEAIKAIVDA  169 (252)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------CCHHHHHHHHHC
Confidence            67999999999999999 788999999999999999999999999999999999999995        456778899999


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      |+++.|+.++.++++.++..++++|.+|+. +++.++.+.+.|+++.|+++++++ +..++..|.++|.++..
T Consensus       170 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          170 GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKS  241 (252)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999998 677788999999999999999855 45788999999986543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=5.6e-27  Score=192.41  Aligned_cols=216  Identities=22%  Similarity=0.301  Sum_probs=193.5

Q ss_pred             hhhHHhHh-hccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcCC
Q 025930            7 NTISVKSE-DIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANAE   84 (246)
Q Consensus         7 ~~~~~~~~-~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~~   84 (246)
                      .+++.+.+ ++..++++..+++.|+++.|+++|+++ ++.++..|+.+|++++. +++++..+++.|+++.|+.++++ +
T Consensus        31 ~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~  108 (252)
T 4db8_A           31 SATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-P  108 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-S
T ss_pred             HHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-C
Confidence            44455533 444778899999999999999999997 78899999999999997 58899999999999999999998 5


Q ss_pred             ChHHHHHHHHHHHHhhCCchhH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           85 DPQTLRMVAGAIANLCGNDKLQ-LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      ++.++..++++|.|++.+++.+ ..+.+.|+++.|+.++.++++.++..++.+|.||+.        ++++.++.+.+.|
T Consensus       109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~~~  180 (252)
T 4db8_A          109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--------GGNEQIQAVIDAG  180 (252)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc--------CChHHHHHHHHCC
Confidence            7999999999999999888888 889999999999999999999999999999999995        4578888899999


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      ++|.|+.++.++++.++..|+++|.+|+. +++.++.+.+.|+++.|+++++++ +..++..|.++|.++.
T Consensus       181 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             CHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999986 777888999999999999999854 4567899999998764

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=1.8e-25  Score=178.62  Aligned_cols=195  Identities=21%  Similarity=0.299  Sum_probs=175.5

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCch
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDK  104 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~  104 (246)
                      ..|+.+.|+.+|+++ ++.++..|+++|.+++. +++.+..+++.|+++.|+.++++ +++.++..|+++|.|++ .+++
T Consensus        10 ~~~~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           10 HGSELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ---CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcH
Confidence            468899999999986 88999999999999994 57889999999999999999998 57999999999999999 6788


Q ss_pred             hHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          105 LQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       105 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                      ++..+++.|+++.|+.+|.++++.++..|+.+|+|++.        ++++.++.+.+.|++|.|+.++.+++++++..|+
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  159 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL  159 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc--------CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence            89999999999999999999999999999999999995        4578888899999999999999999999999999


Q ss_pred             HHHHHhccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          185 LALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       185 ~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      ++|.+|+.+ ++.+..+.+.|+++.|++++.+ ++..+++.|.++|.++
T Consensus       160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l  207 (210)
T 4db6_A          160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKL  207 (210)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence            999999985 7888999999999999999985 5566788888888654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.94  E-value=7.6e-25  Score=195.45  Aligned_cols=223  Identities=18%  Similarity=0.242  Sum_probs=181.4

Q ss_pred             hhhhHHhHhhccccc-cHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIRAQS-NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++.+.+++..++ ++..+++.|+||+|+++|+++ ++.++..|+++|.||+.+ ++++..|++.|++|.|+.+++..
T Consensus        20 ~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~   98 (457)
T 1xm9_A           20 AIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT   98 (457)
T ss_dssp             HHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC
Confidence            467788889886654 577999999999999999985 888999999999999987 89999999999999999999943


Q ss_pred             CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc--------C--------CCHHHHHHHHHHHHHhhcccccc
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR--------C--------GHPDVLAQVARGIANFAKCESRA  147 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~--------~--------~~~~~~~~a~~~L~nL~~~~~~~  147 (246)
                      .++++++.++++|+||+.+++++..+++ |++|+|+.++.        +        .++++.+.|+++|+|||.     
T Consensus        99 ~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~-----  172 (457)
T 1xm9_A           99 GNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS-----  172 (457)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT-----
T ss_pred             CCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc-----
Confidence            6899999999999999988999999999 99999999993        2        246677899999999994     


Q ss_pred             cccCChhhhHHHHhC-CChHHHHHcccC----------------------------------------------------
Q 025930          148 STQGTKTGRSLLIDD-GALPWIVQNSNN----------------------------------------------------  174 (246)
Q Consensus       148 ~~~~~~~~~~~l~~~-g~i~~Lv~ll~~----------------------------------------------------  174 (246)
                          .++.++.+.+. |++|.|+.++.+                                                    
T Consensus       173 ----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (457)
T 1xm9_A          173 ----ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG  248 (457)
T ss_dssp             ----SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------
T ss_pred             ----CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccc
Confidence                37889999887 889988877752                                                    


Q ss_pred             -----------------------------------------------CChhHHHHHHHHHHHhccCc-h----h-HHHHH
Q 025930          175 -----------------------------------------------EASPIRRHIELALCHLAQHE-V----N-AKDMI  201 (246)
Q Consensus       175 -----------------------------------------------~~~~v~~~a~~aL~~La~~~-~----~-~~~i~  201 (246)
                                                                     .++.+++.|+++|+||+... .    . +..+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~  328 (457)
T 1xm9_A          249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL  328 (457)
T ss_dssp             -----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHT
T ss_pred             hhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHH
Confidence                                                           13567778899999998733 2    2 33444


Q ss_pred             hCCcHHHHHHHHhcCCHHHHHHHHHHHHcc---ChhHHHHHH
Q 025930          202 SGGALWELVRISRDCSREDIRTLAHRTLTS---SPAFQAEMR  240 (246)
Q Consensus       202 ~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~---~~~~~~e~~  240 (246)
                      +.|+++.|++++.+++. .++..|.++|.+   .+.....+.
T Consensus       329 ~~~~l~~Lv~LL~~~~~-~v~~~A~~aL~nls~~~~~~~~i~  369 (457)
T 1xm9_A          329 KEKGLPQIARLLQSGNS-DVVRSGASLLSNMSRHPLLHRVMG  369 (457)
T ss_dssp             TSCCHHHHHHHTTCSCH-HHHHHHHHHHHHHHTSGGGHHHHH
T ss_pred             HcCCchHHHHHHhCCCH-hHHHHHHHHHHHHhcCHHHHHHHH
Confidence            68999999999996655 556667777764   444444443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.94  E-value=3.5e-25  Score=197.67  Aligned_cols=220  Identities=18%  Similarity=0.236  Sum_probs=177.7

Q ss_pred             hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh---
Q 025930            6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA---   81 (246)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~---   81 (246)
                      ..+.+.+.|++.. +++|..|++.|+||+|+++|+...++.+++.|+++|+||+.++++|..+++ |++|.|+.++.   
T Consensus        62 ~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~  140 (457)
T 1xm9_A           62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPF  140 (457)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccc
Confidence            5678999999876 999999999999999999999334888999999999999999999999999 99999999993   


Q ss_pred             -----cC-------CChHHHHHHHHHHHHhhCCchhHHHHHhc-CCHHHHHHHhcC------C-----------------
Q 025930           82 -----NA-------EDPQTLRMVAGAIANLCGNDKLQLKLRGE-GGIKALLGMVRC------G-----------------  125 (246)
Q Consensus        82 -----~~-------~~~~~~~~a~~aL~~L~~~~~~~~~l~~~-g~i~~L~~ll~~------~-----------------  125 (246)
                           +.       .++.+.+.|+++|+|||.+++++..+.+. |+++.|+.++.+      .                 
T Consensus       141 s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~  220 (457)
T 1xm9_A          141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY  220 (457)
T ss_dssp             HTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred             cccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhccc
Confidence                 21       25667779999999999889999999997 999999988863      1                 


Q ss_pred             ----------------------------------------------------------------------------CHHH
Q 025930          126 ----------------------------------------------------------------------------HPDV  129 (246)
Q Consensus       126 ----------------------------------------------------------------------------~~~~  129 (246)
                                                                                                  ++.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~  300 (457)
T 1xm9_A          221 RLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT  300 (457)
T ss_dssp             THHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred             chhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHH
Confidence                                                                                        2344


Q ss_pred             HHHHHHHHHHhhcccccccccCC--hhh-hHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcH
Q 025930          130 LAQVARGIANFAKCESRASTQGT--KTG-RSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGAL  206 (246)
Q Consensus       130 ~~~a~~~L~nL~~~~~~~~~~~~--~~~-~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i  206 (246)
                      ++.|+++|.|++...      +.  ... +..+.+.|++|.|++++.+++.++++.|+++|.||+.+++++..+. .|++
T Consensus       301 ~e~a~~aL~nl~~~~------~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i  373 (457)
T 1xm9_A          301 LEACAGALQNLTASK------GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVF  373 (457)
T ss_dssp             HHHHHHHHHHHTTCS------SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTH
T ss_pred             HHHHHHHHHHhccCc------CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-Hhhh
Confidence            555666777776421      01  122 3445578999999999999999999999999999999888866554 5899


Q ss_pred             HHHHHHHhcCC-----HHHHHHHHHHHHccCh
Q 025930          207 WELVRISRDCS-----REDIRTLAHRTLTSSP  233 (246)
Q Consensus       207 ~~L~~ll~~~~-----~~~~~~~A~~~L~~~~  233 (246)
                      +.|++++..++     .+++...+.++|.++.
T Consensus       374 ~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~  405 (457)
T 1xm9_A          374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLM  405 (457)
T ss_dssp             HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999998653     3566778888776543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.94  E-value=1.4e-25  Score=210.19  Aligned_cols=227  Identities=17%  Similarity=0.179  Sum_probs=198.7

Q ss_pred             hhhhHHhHhhccccccHHHHH-HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcc----------------------
Q 025930            6 LNTISVKSEDIRAQSNQEKIV-EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNET----------------------   62 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~-~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~----------------------   62 (246)
                      .++++.++.++..++.|..++ +.|++|+|+++|+++ ++.++..|+++|+|++.+++                      
T Consensus       397 ~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~  475 (810)
T 3now_A          397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE  475 (810)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc
Confidence            367889999999999999999 479999999999986 78889999999999987531                      


Q ss_pred             --------hH---HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHH
Q 025930           63 --------NQ---ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLA  131 (246)
Q Consensus        63 --------~~---~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~  131 (246)
                              .+   +.+++.|++|.|+.++++ +++.+++.|+++|.|++.+++++..+++.|++|+|+.+++++++..++
T Consensus       476 ~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~  554 (810)
T 3now_A          476 HELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKR  554 (810)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             cccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHH
Confidence                    23   678899999999999998 579999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccc----------c---------------------------cCChhhhHHHHhCCChHHHHHcccC
Q 025930          132 QVARGIANFAKCESRAS----------T---------------------------QGTKTGRSLLIDDGALPWIVQNSNN  174 (246)
Q Consensus       132 ~a~~~L~nL~~~~~~~~----------~---------------------------~~~~~~~~~l~~~g~i~~Lv~ll~~  174 (246)
                      .|+++|.||+...+++.          .                           ..+++.++.+++.|++|.|+.++.+
T Consensus       555 ~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s  634 (810)
T 3now_A          555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME  634 (810)
T ss_dssp             HHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC
Confidence            99999999986422111          0                           1236778899999999999999999


Q ss_pred             CChhHHHHHHHHHHHhccCchhHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHHHHccChhH
Q 025930          175 EASPIRRHIELALCHLAQHEVNAKDMIS-GGALWELVRISRDCSREDIRTLAHRTLTSSPAF  235 (246)
Q Consensus       175 ~~~~v~~~a~~aL~~La~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~  235 (246)
                      +++.+++.|+++|+||+.+++.+..+.+ .|.++.|+.++.+ ++..++..|.++|+++...
T Consensus       635 ~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s-~d~~vq~~Aa~ALanLt~~  695 (810)
T 3now_A          635 DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED-EDEETATACAGALAIITSV  695 (810)
T ss_dssp             CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999888886 7999999999985 4567888889999987764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=1e-24  Score=197.16  Aligned_cols=218  Identities=18%  Similarity=0.252  Sum_probs=189.5

Q ss_pred             hhhhhHHhHhhc-cccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhc
Q 025930            5 ILNTISVKSEDI-RAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~   82 (246)
                      +..++|++.|++ .++++++.+++.|+||.|+.+|+++ ++.+++.|+++|+|++.+ ++.|..+.+.|+++.|+.++.+
T Consensus       118 q~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~  196 (510)
T 3ul1_B          118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV  196 (510)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCS
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHh
Confidence            356789999995 5778999999999999999999986 888999999999999987 7789999999999998888753


Q ss_pred             C----------------------------------------------CChHHHHHHHHHHHHhhCCc-hhHHHHHhcCCH
Q 025930           83 A----------------------------------------------EDPQTLRMVAGAIANLCGND-KLQLKLRGEGGI  115 (246)
Q Consensus        83 ~----------------------------------------------~~~~~~~~a~~aL~~L~~~~-~~~~~l~~~g~i  115 (246)
                      .                                              ++++++..++++|.+|+..+ +....+.+.|++
T Consensus       197 ~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i  276 (510)
T 3ul1_B          197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV  276 (510)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCH
T ss_pred             ccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccc
Confidence            2                                              26778889999999999554 455667799999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cc
Q 025930          116 KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HE  194 (246)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~  194 (246)
                      +.|+.++.++++.++..++++|+|++.        +++..+..+.+.|+++.|+.++.++++.+++.|+++|+||+. ++
T Consensus       277 ~~Lv~lL~~~~~~v~~~al~aL~nl~~--------~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~  348 (510)
T 3ul1_B          277 PQLVKLLGATELPIVTPALRAIGNIVT--------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ  348 (510)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             hhhhhhhcCCChhhhhHHHHHHHHhhc--------CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH
Confidence            999999999999999999999999985        567889999999999999999999999999999999999987 66


Q ss_pred             hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          195 VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       195 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      +.+..+.+.|+++.|+.++++++ .+++..|.++|.+.
T Consensus       349 ~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl  385 (510)
T 3ul1_B          349 DQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNY  385 (510)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence            77889999999999999999655 55677778888753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=182.00  Aligned_cols=191  Identities=18%  Similarity=0.158  Sum_probs=164.5

Q ss_pred             CHHHHHHHhcCCCCH--HHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-Cchh
Q 025930           30 GLTSLLMLLGSSEDE--TIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-NDKL  105 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~--~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~~  105 (246)
                      .+|+|+++|+++ ++  .++..|+.+|.+++. +++++..+++.|+||.|+.+|++ +++++++.|+++|.||+. ++++
T Consensus         9 ~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHH
Confidence            489999999997 55  778889999999985 57899999999999999999998 679999999999999995 7899


Q ss_pred             HHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-----------
Q 025930          106 QLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-----------  173 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-----------  173 (246)
                      +..+.+.|+||+|+++|+ +++.++++.++++|+||+.+         +++|..+.+. ++|.|++++.           
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~---------~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~  156 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN---------DKLKNLMITE-ALLTLTENIIIPFSGWPEGDY  156 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS---------GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC---------hhhHHHHHhc-cHHHHHHHHhccccCCccccc
Confidence            999999999999999998 57899999999999999954         5888888875 6999998763           


Q ss_pred             -----CCChhHHHHHHHHHHHhcc-CchhHHHHHhC-CcHHHHHHHHhcC-----CHHHHHHHHHHHHccC
Q 025930          174 -----NEASPIRRHIELALCHLAQ-HEVNAKDMISG-GALWELVRISRDC-----SREDIRTLAHRTLTSS  232 (246)
Q Consensus       174 -----~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~-g~i~~L~~ll~~~-----~~~~~~~~A~~~L~~~  232 (246)
                           ..+++++++|..+|.||+. +++.|+.|+++ |.++.|+.+++.+     .+....+.|..+|.++
T Consensus       157 ~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL  227 (233)
T 3tt9_A          157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL  227 (233)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence                 1267999999999999988 67999999986 6789999999863     1334567777777653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.93  E-value=1.8e-24  Score=196.21  Aligned_cols=217  Identities=18%  Similarity=0.260  Sum_probs=188.3

Q ss_pred             hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..++|++.|++. +++++..+++.|+||.|+.+|+++ ++.+++.|+++|+|++.+ +++|..+++.|+++.|+.++...
T Consensus       138 ~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~  216 (529)
T 3tpo_A          138 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVP  216 (529)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhcc
Confidence            457889999975 456778999999999999999996 888999999999999987 78999999999999888776431


Q ss_pred             ----------------------------------------------CChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHH
Q 025930           84 ----------------------------------------------EDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIK  116 (246)
Q Consensus        84 ----------------------------------------------~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~  116 (246)
                                                                    ++++++..++++|.+++.. ++....+++.|+++
T Consensus       217 ~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~  296 (529)
T 3tpo_A          217 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVP  296 (529)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHH
T ss_pred             chhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchH
Confidence                                                          2677888899999999955 45556678999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cch
Q 025930          117 ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEV  195 (246)
Q Consensus       117 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~  195 (246)
                      .|+.++.++++.++..++++|+|++.        +++..+..+.+.|+++.|+.++.++++.+++.|+++|+|++. +++
T Consensus       297 ~Lv~lL~~~~~~v~~~a~~aL~nl~~--------~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~  368 (529)
T 3tpo_A          297 QLVKLLGATELPIVTPALRAIGNIVT--------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD  368 (529)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHc--------cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH
Confidence            99999999999999999999999984        567899999999999999999999999999999999999987 667


Q ss_pred             hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          196 NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       196 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      .+..+++.|+++.|+.++++++ ..++..|.++|.+.
T Consensus       369 ~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl  404 (529)
T 3tpo_A          369 QIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNY  404 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            7888999999999999999655 45677777788653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.93  E-value=2.4e-25  Score=202.33  Aligned_cols=217  Identities=16%  Similarity=0.192  Sum_probs=181.4

Q ss_pred             hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhc
Q 025930            6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~   82 (246)
                      ..+++.+.+++. ++++|..|++.|+||+||++|+++ ++.+++.|+++|+||+.+  +++|..|++.|+|+.|+.++++
T Consensus        66 ~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s  144 (584)
T 3l6x_A           66 SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK  144 (584)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence            345678899985 889999999999999999999996 889999999999999984  8899999999999999999998


Q ss_pred             CCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc------------------CCCHHHHHHHHHHHHHhhccc
Q 025930           83 AEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR------------------CGHPDVLAQVARGIANFAKCE  144 (246)
Q Consensus        83 ~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~------------------~~~~~~~~~a~~~L~nL~~~~  144 (246)
                      ..+.++++.++++|+||+.+++++..+++ +++++|+.++.                  +.+++++++|+++|+||+.  
T Consensus       145 ~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~--  221 (584)
T 3l6x_A          145 ARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSS--  221 (584)
T ss_dssp             CCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTS--
T ss_pred             CCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhc--
Confidence            66788999999999999999999999986 57999999872                  2357999999999999995  


Q ss_pred             ccccccCChhhhHHHHhC-CChHHHHHcccC------CChhHHHHHHHHHHHhccCchh---------------------
Q 025930          145 SRASTQGTKTGRSLLIDD-GALPWIVQNSNN------EASPIRRHIELALCHLAQHEVN---------------------  196 (246)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~-g~i~~Lv~ll~~------~~~~v~~~a~~aL~~La~~~~~---------------------  196 (246)
                            .++++|+.+.+. |+++.|+.+++.      .+...++.|+++|+||+...+.                     
T Consensus       222 ------~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~  295 (584)
T 3l6x_A          222 ------ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGT  295 (584)
T ss_dssp             ------SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------
T ss_pred             ------CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccc
Confidence                  346789999985 456799999874      4668999999999999875211                     


Q ss_pred             -----HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          197 -----AKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       197 -----~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                           .+.+.+.++++.|+.+++.++...+++.|.++|.+.
T Consensus       296 ~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL  336 (584)
T 3l6x_A          296 SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNL  336 (584)
T ss_dssp             CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             cCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence                 111122345677899998777788999999999654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.93  E-value=8.1e-25  Score=197.78  Aligned_cols=207  Identities=17%  Similarity=0.221  Sum_probs=174.5

Q ss_pred             HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930           22 QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC  100 (246)
Q Consensus        22 ~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~  100 (246)
                      .+.++++|+||+||++|++++++.+|..|+++|+|++.+ ++++..+++.|++|.|+.++++ ++..+++.|+++|.|++
T Consensus        93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa  171 (510)
T 3ul1_B           93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIA  171 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence            689999999999999999877899999999999999765 7789999999999999999998 67999999999999999


Q ss_pred             C-CchhHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC
Q 025930          101 G-NDKLQLKLRGEGGIKALLGMVRCGH-----PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN  174 (246)
Q Consensus       101 ~-~~~~~~~l~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~  174 (246)
                      . +++++..+.+.|++++|+.++.+++     ..++..++.++.|++..        ...........+++|.|+.++.+
T Consensus       172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~--------~~~~~~~~~~~~~lp~L~~LL~~  243 (510)
T 3ul1_B          172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN--------KNPAPPLDAVEQILPTLVRLLHH  243 (510)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC--------CSSCCCHHHHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc--------ccchhHHHHHHhHHHHHHHHHhc
Confidence            5 5788899999999999999998653     35678999999999953        22333333345789999999999


Q ss_pred             CChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhHHHH
Q 025930          175 EASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAE  238 (246)
Q Consensus       175 ~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~e  238 (246)
                      ++++++..++++|.+|+.++ +..+.+.+.|+++.|+.++.++ +..++..|.++|.++....++
T Consensus       244 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~  307 (510)
T 3ul1_B          244 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDE  307 (510)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred             CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHH
Confidence            99999999999999999855 4556777899999999999854 455778888888765433333

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.93  E-value=2.8e-25  Score=208.14  Aligned_cols=218  Identities=12%  Similarity=0.081  Sum_probs=185.7

Q ss_pred             hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHH---HhcCcHHHHHHHHhc
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELI---MTQGGIGLLSTTAAN   82 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i---~~~g~i~~L~~ll~~   82 (246)
                      -+++|++.|++.++++|..++++|++|+|+.+|+++ ++..++.|+++|+|++.+.+....+   ...|++|+|+.++.+
T Consensus       513 e~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~  591 (810)
T 3now_A          513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ  591 (810)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence            367899999999999999999999999999999997 6778999999999998653333222   124699999999986


Q ss_pred             CCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930           83 AEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID  161 (246)
Q Consensus        83 ~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~  161 (246)
                      ..+...+..|++||.||+.. ++++..+++.|+++.|+.++.++++.+++.|+.+++||+.+         ++.+..+.+
T Consensus       592 ~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~---------~~~~~~~v~  662 (810)
T 3now_A          592 DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS---------EDVIKMFEG  662 (810)
T ss_dssp             TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS---------HHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---------hHHHHHHHh
Confidence            43444556899999999955 68899999999999999999999999999999999999953         567777775


Q ss_pred             -CCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          162 -DGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMIS-GGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       162 -~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                       .|.++.|+.++..++..+++.|+++|.+|+. ++...+.+++ .|+++.|++++.+ ++..++..|.+++.++..
T Consensus       663 ~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred             ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHh
Confidence             7899999999999999999999999999998 7888899998 8999999999995 556677888888865443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=2.6e-24  Score=181.32  Aligned_cols=216  Identities=16%  Similarity=0.148  Sum_probs=180.4

Q ss_pred             hhhhHHhHhhccccccHHHHHHhCCHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLM-LLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~-ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..++-.+.++..+.+|...+...|++|+|+. +|+++ ++.++..|+++|++++.+ +..+..+++.|+++.|+.++++.
T Consensus        58 ~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~  136 (296)
T 1xqr_A           58 EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD  136 (296)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC
Confidence            3567788888888899999999999999999 99986 889999999999999876 67899999999999999999975


Q ss_pred             CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           84 EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      ++..+++.|++||+|++ .++..++.+.+.|+++.|+.+|+++++.++..|+++|.+++.        ++++.++.+.+.
T Consensus       137 ~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~--------~~~~~~~~vv~~  208 (296)
T 1xqr_A          137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV--------GHPEHKGTLCSM  208 (296)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------CChHHHHHHHHc
Confidence            57889999999999999 567777889999999999999999999999999999999995        457899999999


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhccC-chhHHHHHhC-CcH-HH---HHHHHhcCC-HHHHHHHHHHHHc
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQH-EVNAKDMISG-GAL-WE---LVRISRDCS-REDIRTLAHRTLT  230 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~-~~~~~~i~~~-g~i-~~---L~~ll~~~~-~~~~~~~A~~~L~  230 (246)
                      |++|.|+.+|..+++.+++.++.+|.+|+.. +..++.+... ..+ ..   -++-++..+ .++..+.|.+++.
T Consensus       209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~  283 (296)
T 1xqr_A          209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ  283 (296)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999885 3333333321 112 11   233344232 4667777877774

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.93  E-value=7e-25  Score=178.12  Aligned_cols=178  Identities=19%  Similarity=0.259  Sum_probs=155.1

Q ss_pred             hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ...++.+.+++. ++++|..|++.|+||+|+++|+++ ++.+++.|+++|.||+.+ ++++..|++.|+||.|+.++++.
T Consensus        28 ~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~  106 (233)
T 3tt9_A           28 SAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT  106 (233)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccC
Confidence            345677888884 678999999999999999999996 889999999999999975 88999999999999999999864


Q ss_pred             CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc----------------CCCHHHHHHHHHHHHHhhcccccc
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR----------------CGHPDVLAQVARGIANFAKCESRA  147 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~----------------~~~~~~~~~a~~~L~nL~~~~~~~  147 (246)
                      .+.+++++++++|+||+..++++..+++. ++++|+.++.                +.+++++.+|+++|+||+.     
T Consensus       107 ~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss-----  180 (233)
T 3tt9_A          107 RDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS-----  180 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT-----
T ss_pred             CCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc-----
Confidence            67899999999999999999999998875 6999988663                1267899999999999995     


Q ss_pred             cccCChhhhHHHHhC-CChHHHHHcccCC------ChhHHHHHHHHHHHhccC
Q 025930          148 STQGTKTGRSLLIDD-GALPWIVQNSNNE------ASPIRRHIELALCHLAQH  193 (246)
Q Consensus       148 ~~~~~~~~~~~l~~~-g~i~~Lv~ll~~~------~~~v~~~a~~aL~~La~~  193 (246)
                         .++++|+.|.+. |.|+.|+.+++..      +...+++|+.+|+||++.
T Consensus       181 ---~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          181 ---AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             ---SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ---CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence               346999999976 5689999999753      568999999999999874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.92  E-value=6.5e-24  Score=173.33  Aligned_cols=193  Identities=22%  Similarity=0.381  Sum_probs=175.6

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chhH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKLQ  106 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~  106 (246)
                      |+++.|+++|+++ ++.++..|+.+|.+++.+ ++++..+++.|+++.|+.++++ +++.++..++++|.+++.+ ++++
T Consensus         2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHH
Confidence            6799999999997 688999999999999877 4599999999999999999998 5799999999999999965 8999


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                      ..+.+.|+++.++.++++++++++..++.+|.|++.        .+++.+..+.+.|+++.|+.++.++++.++..++++
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~  151 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--------GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA  151 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999994        457899999999999999999999999999999999


Q ss_pred             HHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          187 LCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       187 L~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      |++|+. +++.++.+.+.|+++.|+.++.+ +++.++..|.++|.++
T Consensus       152 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l  197 (252)
T 4hxt_A          152 LANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANI  197 (252)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHH
Confidence            999998 56667889999999999999995 4567888888888753

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.92  E-value=1.3e-23  Score=190.62  Aligned_cols=211  Identities=18%  Similarity=0.289  Sum_probs=178.0

Q ss_pred             cHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 025930           21 NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANL   99 (246)
Q Consensus        21 ~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L   99 (246)
                      ..+.+++.|+||+|+++|+.++++.++..|+++|+|++.+ ++++..+++.|++|.|+.++.+ +++.+++.|+++|.||
T Consensus       111 ~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nL  189 (529)
T 3tpo_A          111 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNI  189 (529)
T ss_dssp             CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence            3688999999999999998877899999999999999876 5677899999999999999998 6799999999999999


Q ss_pred             hC-CchhHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcccccccc------------------------
Q 025930          100 CG-NDKLQLKLRGEGGIKALLGMVRCGH-----PDVLAQVARGIANFAKCESRAST------------------------  149 (246)
Q Consensus       100 ~~-~~~~~~~l~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~nL~~~~~~~~~------------------------  149 (246)
                      +. +++++..+.+.|++++|+.++..++     ..++..++.++.|++........                        
T Consensus       190 a~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~  269 (529)
T 3tpo_A          190 AGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA  269 (529)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred             hccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHH
Confidence            95 6788999999999999999987543     34567777888887764221110                        


Q ss_pred             ----------cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCH
Q 025930          150 ----------QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSR  218 (246)
Q Consensus       150 ----------~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~  218 (246)
                                .+.++..+.+.+.|++|.|+.++.++++.++..++.+|++++. ++..+..+++.|+++.|+.++.+ .+
T Consensus       270 ~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~  348 (529)
T 3tpo_A          270 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PK  348 (529)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SS
T ss_pred             HHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CC
Confidence                      2345667778899999999999999999999999999999987 66778899999999999999985 45


Q ss_pred             HHHHHHHHHHHccCh
Q 025930          219 EDIRTLAHRTLTSSP  233 (246)
Q Consensus       219 ~~~~~~A~~~L~~~~  233 (246)
                      ..++..|.++|.++.
T Consensus       349 ~~i~~~a~~aL~nl~  363 (529)
T 3tpo_A          349 TNIQKEATWTMSNIT  363 (529)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            667888888887643

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1e-23  Score=168.36  Aligned_cols=177  Identities=21%  Similarity=0.319  Sum_probs=162.7

Q ss_pred             hhhhHHhHhhc-cccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDI-RAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++.+.+++ .+++++..+++.|+++.|+++|+++ ++.++..|+++|+|++. +++++..+++.|+++.|+.++++ 
T Consensus        30 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-  107 (210)
T 4db6_A           30 QSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-  107 (210)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC-
Confidence            46788899998 6788999999999999999999986 88899999999999985 57889999999999999999998 


Q ss_pred             CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           84 EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      .++.++..|+++|.|++ .+++.+..+++.|+++.|+.++.++++.++..|+.+|.|++.        .+++.+..+.+.
T Consensus       108 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~--------~~~~~~~~~~~~  179 (210)
T 4db6_A          108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--------GGNEQKQAVKEA  179 (210)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--------SCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------CCcHHHHHHHHC
Confidence            57999999999999999 566777888999999999999999999999999999999995        447889999999


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      |+++.|+.++.++++++++.|+++|.+|+.
T Consensus       180 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          180 GALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999986

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.91  E-value=7.6e-23  Score=185.05  Aligned_cols=219  Identities=16%  Similarity=0.243  Sum_probs=192.5

Q ss_pred             hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++.+.+++.. ++++..+++.|++++|+.+|+++ ++.++..|+++|++++.+ +..+..+.+.|+++.|+.++.+.
T Consensus       136 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~  214 (528)
T 4b8j_A          136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH  214 (528)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC
Confidence            4567888999875 78999999999999999999986 889999999999999877 67899999999999999999655


Q ss_pred             CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      .++.++..++++|.+|+.+..........|+++.|+.++.+++++++..++.+|.+++.        +.++..+.+.+.|
T Consensus       215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~--------~~~~~~~~~~~~g  286 (528)
T 4b8j_A          215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD--------GTNDKIQAVIEAG  286 (528)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS--------SCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc--------CCHHHHHHHHHcC
Confidence            78999999999999999664444445568999999999999999999999999999994        4466677888999


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      ++|.|+.++.++++.++..|+++|++|+. ++..++.+++.|+++.|+.++.++.+..++..|.++|.++.
T Consensus       287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~  357 (528)
T 4b8j_A          287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT  357 (528)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 66778889999999999999996646778888999887654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.91  E-value=4.5e-23  Score=187.43  Aligned_cols=195  Identities=15%  Similarity=0.171  Sum_probs=168.0

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--Cc
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--ND  103 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~  103 (246)
                      ..+.||.||++|+++ ++.++..|+.+|.+++. +++++..|++.|+||.|+.+|++ .++.+++.|+++|.||+.  ++
T Consensus        46 ~~~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           46 RQPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCH
T ss_pred             ccccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCH
Confidence            467899999999986 78899999999999996 68899999999999999999998 579999999999999996  58


Q ss_pred             hhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc---------
Q 025930          104 KLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN---------  173 (246)
Q Consensus       104 ~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~---------  173 (246)
                      +++..+++.|+|++|+.+|++ ++.++++.++.+|+||+.+         ++++..+.+ +++|.|++++.         
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~---------~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~  193 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH---------DSIKMEIVD-HALHALTDEVIIPHSGWERE  193 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS---------GGGHHHHHH-HTHHHHHHHTHHHHHCCC--
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---------chhhHHHHh-ccHHHHHHHHhccccccccc
Confidence            999999999999999999996 6789999999999999954         688999985 57999999871         


Q ss_pred             ---------CCChhHHHHHHHHHHHhccCc-hhHHHHHhC-CcHHHHHHHHhcC-----CHHHHHHHHHHHHccCh
Q 025930          174 ---------NEASPIRRHIELALCHLAQHE-VNAKDMISG-GALWELVRISRDC-----SREDIRTLAHRTLTSSP  233 (246)
Q Consensus       174 ---------~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~-g~i~~L~~ll~~~-----~~~~~~~~A~~~L~~~~  233 (246)
                               ..++++++.|+++|.||+.+. +.|+.++++ |+++.|+++++++     .+....+.|..+|.+..
T Consensus       194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs  269 (584)
T 3l6x_A          194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS  269 (584)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence                     236799999999999999854 569999985 6667999999752     34456677888876633

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.91  E-value=2.1e-22  Score=164.99  Aligned_cols=203  Identities=19%  Similarity=0.255  Sum_probs=176.6

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-Cchh
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANL-AMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-NDKL  105 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~l-a~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~~  105 (246)
                      ....+.++..|+++ ++.++..|+.+|.++ +.+++++..+++.|+++.|+.++++ +++.++..|+++|.+++. ++++
T Consensus        11 ~~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~   88 (252)
T 4db8_A           11 GSELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQ   88 (252)
T ss_dssp             TCSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHH
Confidence            34589999999996 778899999999876 4467788999999999999999998 469999999999999995 7899


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhh-HHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGR-SLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~-~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                      +..+++.|+++.|+.+++++++.++..|+.+|.|++..         ++.+ ..+.+.|++|.|+.++.++++.++..++
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---------~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~  159 (252)
T 4db8_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---------GNEQIQAVIDAGALPALVQLLSSPNEQILQEAL  159 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---------CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---------CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999999999999999999999943         4555 8899999999999999999999999999


Q ss_pred             HHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc----ChhHHHHHHHh
Q 025930          185 LALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS----SPAFQAEMRRL  242 (246)
Q Consensus       185 ~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~----~~~~~~e~~~~  242 (246)
                      ++|++|+. +++.+..+.+.|+++.|++++.++ +..++..|.++|.+    .+.....+.+.
T Consensus       160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  221 (252)
T 4db8_A          160 WALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEA  221 (252)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence            99999998 567778889999999999999855 66778888888875    34444444443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=7.2e-23  Score=172.53  Aligned_cols=192  Identities=17%  Similarity=0.171  Sum_probs=167.9

Q ss_pred             HHHHHHHhcCCC-----------CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHH-HHhcCCChHHHHHHHHHHHH
Q 025930           31 LTSLLMLLGSSE-----------DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST-TAANAEDPQTLRMVAGAIAN   98 (246)
Q Consensus        31 i~~Li~ll~~~~-----------~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~~a~~aL~~   98 (246)
                      ++..+..|.++.           +...+..|+..|.++..+.+++..+.+.|+++.|+. ++.+ +++.+++.|+++|.+
T Consensus        30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~  108 (296)
T 1xqr_A           30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGT  108 (296)
T ss_dssp             HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence            567778887641           123466699999999999889999999999999999 9987 689999999999999


Q ss_pred             hh-CCchhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCC
Q 025930           99 LC-GNDKLQLKLRGEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEA  176 (246)
Q Consensus        99 L~-~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~  176 (246)
                      ++ .++.++..+++.|++++|+.+|++ +++.+++.|+++|.|++.        +.+...+.+.+.|++|.|+.++++++
T Consensus       109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~--------~~~~~~~~~~~~ggi~~L~~lL~~~d  180 (296)
T 1xqr_A          109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR--------EQEAGLLQFLRLDGFSVLMRAMQQQV  180 (296)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--------CCcHHHHHHHHCCCHHHHHHHHcCCC
Confidence            99 567889999999999999999995 478999999999999994        56788888999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          177 SPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       177 ~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      +.++..|+++|.+|+. +++.+..+++.|+++.|+.++... +..+++.|.++|.++
T Consensus       181 ~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l  236 (296)
T 1xqr_A          181 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSL  236 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHH
Confidence            9999999999999987 678899999999999999999855 456778888888653

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.90  E-value=5.7e-22  Score=179.28  Aligned_cols=218  Identities=16%  Similarity=0.201  Sum_probs=184.7

Q ss_pred             hhhhHHhHhhc-ccc-ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhc
Q 025930            6 LNTISVKSEDI-RAQ-SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus         6 ~~~~~~~~~~~-~~~-~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~   82 (246)
                      ..+++.+.++. ... .++..+++.|++|.|+.+|++++++.++..|+++|++++.+ ++++..+++.|+++.|+.++.+
T Consensus        92 ~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~  171 (528)
T 4b8j_A           92 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS  171 (528)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC
Confidence            34556666663 333 67899999999999999999875589999999999999987 7899999999999999999998


Q ss_pred             CCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH
Q 025930           83 AEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI  160 (246)
Q Consensus        83 ~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~  160 (246)
                       +++.++..|+++|.+++ .++.++..+.+.|++++|+.++ .++++.++..++.+|.+|+...         .......
T Consensus       172 -~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~---------~~~~~~~  241 (528)
T 4b8j_A          172 -SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK---------PQPSFEQ  241 (528)
T ss_dssp             -SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS---------SCCCHHH
T ss_pred             -CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---------CCCcHHH
Confidence             57999999999999999 5577889999999999999999 5778999999999999999531         2222334


Q ss_pred             hCCChHHHHHcccCCChhHHHHHHHHHHHhccCch-hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          161 DDGALPWIVQNSNNEASPIRRHIELALCHLAQHEV-NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       161 ~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      ..|++|.|+.++.+++++++..++++|.+|+...+ ..+.+++.|+++.|+.++.+++ ..++..|.++|.++..
T Consensus       242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVT  315 (528)
T ss_dssp             HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHc
Confidence            48899999999999999999999999999998554 4578889999999999998654 6778889998876443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.89  E-value=5.4e-22  Score=178.68  Aligned_cols=215  Identities=20%  Similarity=0.225  Sum_probs=184.9

Q ss_pred             hhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCc-c---hHHHHHhcCcHHHHHHHH
Q 025930            7 NTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSS-EDETIHRVAAGAIANLAMNE-T---NQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         7 ~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~~-~---~~~~i~~~g~i~~L~~ll   80 (246)
                      .+.+++.+++.. +++++.+.+.|+++.|+++|.+. +++.++..|+.+|+|++.+. +   .+..+.+.|+++.|+.++
T Consensus       285 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL  364 (529)
T 1jdh_A          285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL  364 (529)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHh
Confidence            467788888775 46999999999999999999863 34788999999999998762 2   577899999999999999


Q ss_pred             hcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHH----------------------HHHHHHH
Q 025930           81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLA----------------------QVARGIA  138 (246)
Q Consensus        81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~----------------------~a~~~L~  138 (246)
                      .+..++.++..++++|.|++.+++++..+.+.|+++.|+.++.++++++++                      .++.+|+
T Consensus       365 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~  444 (529)
T 1jdh_A          365 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH  444 (529)
T ss_dssp             STTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHH
Confidence            986556899999999999999888998999999999999999876555554                      5556667


Q ss_pred             HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 025930          139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSR  218 (246)
Q Consensus       139 nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~  218 (246)
                      +|+         .+++.+..+.+.|+++.|+.++.++++.++..++++|.+|+.+++.+..+.+.|+++.|..++. +++
T Consensus       445 ~L~---------~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~-~~~  514 (529)
T 1jdh_A          445 ILA---------RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRN  514 (529)
T ss_dssp             HHT---------TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG-CSS
T ss_pred             HHh---------cCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhc-CCC
Confidence            777         3468889999999999999999999999999999999999998889999999999999999987 556


Q ss_pred             HHHHHHHHHHHcc
Q 025930          219 EDIRTLAHRTLTS  231 (246)
Q Consensus       219 ~~~~~~A~~~L~~  231 (246)
                      ++++..|.++|..
T Consensus       515 ~~v~~~a~~aL~~  527 (529)
T 1jdh_A          515 EGVATYAAAVLFR  527 (529)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            7788888888854

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.89  E-value=1.3e-21  Score=177.18  Aligned_cols=218  Identities=15%  Similarity=0.198  Sum_probs=191.1

Q ss_pred             hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++.+.+++.. ++++..+++.|+++.|+.+|+++ ++.++..|+++|++++.+ ++.+..+.+.|+++.|+.++.+ 
T Consensus       149 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-  226 (530)
T 1wa5_B          149 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-  226 (530)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-
Confidence            4567888888764 56888899999999999999986 889999999999999987 6789999999999999999998 


Q ss_pred             CChHHHHHHHHHHHHhhCCc-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           84 EDPQTLRMVAGAIANLCGND-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      .+..++..++++|.+|+.+. .........|+++.|+.++.+++++++..++.+|.+|+.        +.++..+.+.+.
T Consensus       227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--------~~~~~~~~~~~~  298 (530)
T 1wa5_B          227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--------GPQEAIQAVIDV  298 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--------SCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC--------CCHHHHHHHHhc
Confidence            67899999999999999554 444556678999999999999999999999999999994        446778888999


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      |++|.|+.++.++++.++..|+++|++++. ++...+.+.+.|+++.|+.+++++ +..++..|.++|.++..
T Consensus       299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA  370 (530)
T ss_dssp             TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999997 566778888999999999999865 56788889999976543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.89  E-value=4.6e-22  Score=179.14  Aligned_cols=216  Identities=15%  Similarity=0.196  Sum_probs=189.1

Q ss_pred             hhhhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE   84 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~   84 (246)
                      .+++..+.+++..++++..++.. |++++|+.+|++++++.++..|+.+|++++.+++++..+.+.|+++.|+.++++ +
T Consensus        35 ~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~-~  113 (529)
T 1jdh_A           35 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS-P  113 (529)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC-S
T ss_pred             HHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC-C
Confidence            35677889999998998888864 899999999987668889999999999999998899999999999999999998 5


Q ss_pred             ChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           85 DPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      ++.++..++++|.+++.+ +..+..+.+.|+++.|+.++++++++++..++.+|.+++.        ++++.+..+.+.|
T Consensus       114 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--------~~~~~~~~i~~~~  185 (529)
T 1jdh_A          114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--------GNQESKLIILASG  185 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--------CCHHHHHHHHHCC
Confidence            799999999999999954 6677888899999999999999999999999999999994        5679999999999


Q ss_pred             ChHHHHHcccCCCh-hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          164 ALPWIVQNSNNEAS-PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~-~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +++.|+.+++.+++ ..+..++.+|++|+.+++++..+.+.|+++.|+.++.+++ ..++..|.++|.+
T Consensus       186 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~L~~  253 (529)
T 1jdh_A          186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN  253 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence            99999999987754 5667789999999999999999999999999999998654 4455566666643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.89  E-value=3e-21  Score=174.82  Aligned_cols=217  Identities=13%  Similarity=0.173  Sum_probs=185.4

Q ss_pred             hhhHHhHhhccc--cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            7 NTISVKSEDIRA--QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         7 ~~~~~~~~~~~~--~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      .++..+.++...  ..+++.+++.|++|.|+++|++++++.++..|+++|++++.+ ++.+..+++.|+++.|+.++++ 
T Consensus       106 ~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-  184 (530)
T 1wa5_B          106 SATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-  184 (530)
T ss_dssp             HHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred             HHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-
Confidence            455666666433  456788999999999999999865788999999999999886 6788889999999999999998 


Q ss_pred             CChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           84 EDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      +++.+++.|+++|.+++.+ ++++..+...|+++.|+.++.++++.++..++.+|.+|+..        ...........
T Consensus       185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~--------~~~~~~~~~~~  256 (530)
T 1wa5_B          185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG--------KKPQPDWSVVS  256 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC--------SSSCCCHHHHG
T ss_pred             CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC--------CCCCCcHHHHH
Confidence            5799999999999999955 78888899999999999999999999999999999999953        21223344557


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      +++|.|+.++.++++.++..++++|.+|+. +++.+..+.+.|+++.|+.++.+ .+..++..|.++|.++.
T Consensus       257 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~  327 (530)
T 1wa5_B          257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIV  327 (530)
T ss_dssp             GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHH
Confidence            899999999999999999999999999997 45677888999999999999985 45677888888887644

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.88  E-value=4.7e-21  Score=169.11  Aligned_cols=217  Identities=16%  Similarity=0.199  Sum_probs=186.0

Q ss_pred             hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++++.+++. +++++..+++.|++|.|+++|+++ ++.+++.|+++|++++.+ ++.+..+++.|+++.|+.++.+.
T Consensus        83 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~  161 (450)
T 2jdq_A           83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ  161 (450)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            356778888876 356777888999999999999986 889999999999999987 57888999999999999999965


Q ss_pred             CChHHHHHHHHHHHHhhCC--chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930           84 EDPQTLRMVAGAIANLCGN--DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID  161 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~  161 (246)
                      .+..++..++++|.+++.+  +.....++ .|+++.|+.++.+++++++..++.+|.+++.        ..++.+..+.+
T Consensus       162 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~  232 (450)
T 2jdq_A          162 NRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSD--------GPNDKIQAVID  232 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS--------SSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHC--------CCcHHHHHHHH
Confidence            6789999999999999954  33333333 7899999999999999999999999999995        34677888889


Q ss_pred             CCChHHHHHcccCCChhHHHHHHHHHHHhccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          162 DGALPWIVQNSNNEASPIRRHIELALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       162 ~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      .|++|.|+.++.+++++++..|+++|.+++.+ +..++.+.+.|+++.|+.++.++ +..++..|.++|.++.
T Consensus       233 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~  304 (450)
T 2jdq_A          233 AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNIT  304 (450)
T ss_dssp             TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999984 45567788899999999999864 5678888999887644

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.88  E-value=2.6e-21  Score=179.26  Aligned_cols=216  Identities=15%  Similarity=0.199  Sum_probs=190.4

Q ss_pred             hhhhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE   84 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~   84 (246)
                      .+++..+.+++..++++..++.. |+++.|+..|++++++.++..|+.+|.+++.+++++..+.+.|+++.|+.++++ +
T Consensus        32 ~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~  110 (644)
T 2z6h_A           32 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS-P  110 (644)
T ss_dssp             HHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC-S
T ss_pred             HHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC-C
Confidence            35677889999988888888764 899999999998668899999999999999998899999999999999999998 5


Q ss_pred             ChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           85 DPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      ++.++..|+++|.|++.+ +..+..+.+.|+++.|+.+++++++.++..++.+|.+++.        ++++.+..+.+.|
T Consensus       111 ~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--------~~~~~~~~i~~~g  182 (644)
T 2z6h_A          111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--------GNQESKLIILASG  182 (644)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--------cCcHHHHHHHHcC
Confidence            799999999999999954 6677788899999999999999999999999999999994        4579999999999


Q ss_pred             ChHHHHHcccCCC-hhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          164 ALPWIVQNSNNEA-SPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       164 ~i~~Lv~ll~~~~-~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +++.|+.++...+ ..++..++.+|++|+.+++++..+++.|+++.|+.++.+++ ..++..+.++|.+
T Consensus       183 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~n  250 (644)
T 2z6h_A          183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN  250 (644)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence            9999999998774 57888999999999999999999999999999999998554 4556666666654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.87  E-value=1.4e-20  Score=166.06  Aligned_cols=216  Identities=14%  Similarity=0.179  Sum_probs=185.5

Q ss_pred             hhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHHhcC
Q 025930            7 NTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         7 ~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ++++.+.+++.. ++++..+++.|+++.|+.++++..++.+++.|+++|++++.+.  ..+..++ .++++.|+.++.+ 
T Consensus       126 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~-  203 (450)
T 2jdq_A          126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFV-  203 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTC-
T ss_pred             HHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHcc-
Confidence            467788888765 4688889999999999999996558889999999999998663  3333333 7899999999997 


Q ss_pred             CChHHHHHHHHHHHHhhC-CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           84 EDPQTLRMVAGAIANLCG-NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      +|+.++..++++|.+++. .++....+.+.|+++.|+.++.++++.++..++.+|.+++.        +.+..++.+.+.
T Consensus       204 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--------~~~~~~~~~~~~  275 (450)
T 2jdq_A          204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT--------GDDIQTQVILNC  275 (450)
T ss_dssp             CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh--------CChHHHHHHHHC
Confidence            578999999999999995 45777888899999999999999999999999999999995        456777788889


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      |+++.|+.++.++++.++..|+++|.+++. +++..+.+.+.|+++.|+.++.+++ ..++..|.++|.++.
T Consensus       276 ~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~  346 (450)
T 2jdq_A          276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKEAAWAITNAT  346 (450)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999986 6777888899999999999999654 567888888887653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.87  E-value=9.6e-21  Score=179.05  Aligned_cols=218  Identities=19%  Similarity=0.236  Sum_probs=188.5

Q ss_pred             hhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCC-cc---hHHHHHhcCcHHHHHHHH
Q 025930            7 NTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSS-EDETIHRVAAGAIANLAMN-ET---NQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         7 ~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~-~~---~~~~i~~~g~i~~L~~ll   80 (246)
                      .+++++.+++.. ++++..+++.|+++.|+.+|.+. +.+.++..|+++|+|++.. .+   .+..+.+.|+++.|+.++
T Consensus       418 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL  497 (780)
T 2z6g_A          418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL  497 (780)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh
Confidence            467788888765 47899999999999999999873 2347899999999999875 22   367888999999999999


Q ss_pred             hcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCC----------------------HHHHHHHHHHHH
Q 025930           81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGH----------------------PDVLAQVARGIA  138 (246)
Q Consensus        81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~----------------------~~~~~~a~~~L~  138 (246)
                      .+..++.+++.++++|.|++..++++..+.+.|+++.|+.++.+++                      ++++..++++|+
T Consensus       498 ~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~  577 (780)
T 2z6g_A          498 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALH  577 (780)
T ss_dssp             STTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHH
Confidence            9865568999999999999999999988999999999999997532                      456778999999


Q ss_pred             HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 025930          139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSR  218 (246)
Q Consensus       139 nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~  218 (246)
                      +|+.         +++++..+.+.|+++.|+.++.++++.++..++.+|.+|+.+++.+..+.+.|+++.|++++. +.+
T Consensus       578 ~La~---------~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~-~~~  647 (780)
T 2z6g_A          578 ILAR---------DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRN  647 (780)
T ss_dssp             HHTT---------SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGG-CSC
T ss_pred             HHhc---------ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHc-CCC
Confidence            9994         468899999999999999999999999999999999999999999999999999999999998 455


Q ss_pred             HHHHHHHHHHHccChh
Q 025930          219 EDIRTLAHRTLTSSPA  234 (246)
Q Consensus       219 ~~~~~~A~~~L~~~~~  234 (246)
                      ..++..|.++|.++..
T Consensus       648 ~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          648 EGVATYAAAVLFRMSE  663 (780)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            7788999988876443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.87  E-value=1.8e-20  Score=173.62  Aligned_cols=211  Identities=21%  Similarity=0.209  Sum_probs=183.9

Q ss_pred             HHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 025930           24 KIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGAIANLCGN  102 (246)
Q Consensus        24 ~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~  102 (246)
                      ..++.|+++.|+.+|+++ ++.++..|+.+|++++.++.++..+++. |+++.|+..+.+.++++++..|+.+|.+|+.+
T Consensus         9 ~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~   87 (644)
T 2z6h_A            9 AELATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH   87 (644)
T ss_dssp             ---CTTTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred             hhhhhchHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence            446889999999999985 8899999999999999998888888765 88999999999766899999999999999988


Q ss_pred             chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHH
Q 025930          103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRH  182 (246)
Q Consensus       103 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~  182 (246)
                      ++++..+.+.|+++.|+.+++++++.++..|+.+|.|++..        .+..+..+.+.|++|.|+.++.+++++++..
T Consensus        88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~--------~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~  159 (644)
T 2z6h_A           88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH--------QEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  159 (644)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--------STTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhC--------cchhHHHHHHCCChHHHHHHHCcCCHHHHHH
Confidence            88999999999999999999999999999999999999953        3577888889999999999999999999999


Q ss_pred             HHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc---cChhHHHHHHHhh
Q 025930          183 IELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT---SSPAFQAEMRRLR  243 (246)
Q Consensus       183 a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~---~~~~~~~e~~~~~  243 (246)
                      ++.+|.+|+. +++++..+.+.|+++.|++++++.+.+..+..+.++|.   ..+..+..+-+.|
T Consensus       160 a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g  224 (644)
T 2z6h_A          160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG  224 (644)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTT
T ss_pred             HHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCC
Confidence            9999999997 78899999999999999999998776777777777754   4566666555443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.85  E-value=4.5e-20  Score=174.47  Aligned_cols=216  Identities=15%  Similarity=0.192  Sum_probs=188.3

Q ss_pred             hhhhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE   84 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~   84 (246)
                      .+++..+.+++..++++..+++. |+++.|+..|++++++.+++.|+.+|.+++.+++++..+.+.|+++.|+.++++ .
T Consensus       168 ~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~-~  246 (780)
T 2z6g_A          168 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS-P  246 (780)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTC-S
T ss_pred             HHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcC-C
Confidence            35678888999888888888854 899999999987668889999999999999998899999999999999999998 5


Q ss_pred             ChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           85 DPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      ++.++..|+++|.||+.+ +..+..+.+.|+++.|+.++++++..++..++.+|.+++.        ++++.+..+.+.|
T Consensus       247 ~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--------~~~e~~~~i~~~~  318 (780)
T 2z6g_A          247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--------GNQESKLIILASG  318 (780)
T ss_dssp             CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--------CChHHHHHHHHcC
Confidence            799999999999999954 6677778899999999999999999999999999999994        5579999999999


Q ss_pred             ChHHHHHcccCCCh-hHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          164 ALPWIVQNSNNEAS-PIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~-~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +++.|+.+++..++ ..+..++.+|++|+.+++++..+++.|+++.|+.++++.+. ..+..|.++|.+
T Consensus       319 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~-~~~~~a~~~L~~  386 (780)
T 2z6g_A          319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRN  386 (780)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCH-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCch-HHHHHHHHHHHH
Confidence            99999999987765 45667899999999999999999999999999999986544 455555666653

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.1e-19  Score=168.15  Aligned_cols=204  Identities=13%  Similarity=0.104  Sum_probs=164.0

Q ss_pred             cHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCCh--HHHHHHHHHHHH
Q 025930           21 NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDP--QTLRMVAGAIAN   98 (246)
Q Consensus        21 ~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~--~~~~~a~~aL~~   98 (246)
                      +|..+.+.|++|+|+.+++++ ++.+++.|+++|.|++.++++|..+++.|+++.|+.++.+..+.  ..+..|+.||.+
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr  527 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR  527 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            678889999999999999986 88899999999999999999999999999999999999986433  278899999999


Q ss_pred             hh--CCchhHHHHHh---cCCHHHHHHHhcC-CCH------------HH-HHHHHHHHHHhhcccccccccCC--hhhhH
Q 025930           99 LC--GNDKLQLKLRG---EGGIKALLGMVRC-GHP------------DV-LAQVARGIANFAKCESRASTQGT--KTGRS  157 (246)
Q Consensus        99 L~--~~~~~~~~l~~---~g~i~~L~~ll~~-~~~------------~~-~~~a~~~L~nL~~~~~~~~~~~~--~~~~~  157 (246)
                      ++  .++..  .+-.   .|++++|+.+|.. +..            .+ +..|+.+|.||+..+      ++  ++.|.
T Consensus       528 Llis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~------~n~~E~~r~  599 (778)
T 3opb_A          528 MLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE------TSDGEEVCK  599 (778)
T ss_dssp             HHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCC------SHHHHHHHH
T ss_pred             HHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCC------cccchHHHH
Confidence            98  34433  2211   3899999999983 211            12 679999999999642      11  25688


Q ss_pred             HHHhC-CChHHHHHcccCCChhHHHHHHHHHHHhccCchhH-HHHHhCC------cHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          158 LLIDD-GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNA-KDMISGG------ALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       158 ~l~~~-g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~-~~i~~~g------~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      .++.. |++|.|..++.++++.+|+.|+++++||+.+++.+ +.+...+      .++.|+.++.. ++...+.+|.++|
T Consensus       600 ~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagAL  678 (778)
T 3opb_A          600 HIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIF  678 (778)
T ss_dssp             HHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHH
Confidence            88885 99999999999999999999999999999988875 4554332      37789999974 6666788888999


Q ss_pred             ccChh
Q 025930          230 TSSPA  234 (246)
Q Consensus       230 ~~~~~  234 (246)
                      ++.+.
T Consensus       679 AnLts  683 (778)
T 3opb_A          679 ANIAT  683 (778)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            87654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1e-18  Score=161.62  Aligned_cols=216  Identities=10%  Similarity=0.088  Sum_probs=170.5

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHH--HHHHHHHHHHHhcCCcchHHHHHh---cCcHHHHHHHHh
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDET--IHRVAAGAIANLAMNETNQELIMT---QGGIGLLSTTAA   81 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~--~~~~a~~~L~~la~~~~~~~~i~~---~g~i~~L~~ll~   81 (246)
                      .+++++.+++.++++|..++++|++++|+.++.++.+..  .+..|+.+|++++...+....+..   .|++++|+.++.
T Consensus       476 ~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~  555 (778)
T 3opb_A          476 QVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLP  555 (778)
T ss_dssp             HHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcC
Confidence            577899999999999999999999999999999874331  688999999999866544444421   489999999998


Q ss_pred             cCCCh------------HH-HHHHHHHHHHhhCCc-----hhHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 025930           82 NAEDP------------QT-LRMVAGAIANLCGND-----KLQLKLRGE-GGIKALLGMVRCGHPDVLAQVARGIANFAK  142 (246)
Q Consensus        82 ~~~~~------------~~-~~~a~~aL~~L~~~~-----~~~~~l~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~  142 (246)
                      ..++.            .+ ...|+.||.||+..+     +.+..++.. |+++.+..++.+++..+++.|+.+++||+.
T Consensus       556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~  635 (778)
T 3opb_A          556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS  635 (778)
T ss_dssp             CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            31111            12 558999999999654     457878885 999999999999999999999999999995


Q ss_pred             ccccccccCChhhh-HHHHhC------CChHHHHHcccCCChhHHHHHHHHHHHhc-cCchhHHHHHhC-CcHHHHHHHH
Q 025930          143 CESRASTQGTKTGR-SLLIDD------GALPWIVQNSNNEASPIRRHIELALCHLA-QHEVNAKDMISG-GALWELVRIS  213 (246)
Q Consensus       143 ~~~~~~~~~~~~~~-~~l~~~------g~i~~Lv~ll~~~~~~v~~~a~~aL~~La-~~~~~~~~i~~~-g~i~~L~~ll  213 (246)
                      +         ++.+ +.+.+.      +.++.|+.++..++.++|+.|+++|.+++ .++...+.+.+. +++..++.++
T Consensus       636 ~---------~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL  706 (778)
T 3opb_A          636 H---------PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVF  706 (778)
T ss_dssp             S---------GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             C---------cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHH
Confidence            4         3443 233322      23789999999999999999999999996 588888888887 8999999999


Q ss_pred             hcC-CHHHHHHHHHHHHcc
Q 025930          214 RDC-SREDIRTLAHRTLTS  231 (246)
Q Consensus       214 ~~~-~~~~~~~~A~~~L~~  231 (246)
                      ++. ++++++..+.-++.+
T Consensus       707 ~~~~~~~~l~~R~~~~l~N  725 (778)
T 3opb_A          707 ADQIDDIELRQRLLMLFFG  725 (778)
T ss_dssp             HHTTTCHHHHHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHH
Confidence            972 555566666655544

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.40  E-value=1.6e-11  Score=111.28  Aligned_cols=210  Identities=16%  Similarity=0.107  Sum_probs=165.2

Q ss_pred             HHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHHHHHhh-C
Q 025930           26 VEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGAIANLC-G  101 (246)
Q Consensus        26 ~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~  101 (246)
                      .+.+.|+.|+++|++. +-.++..++..|..|+.+  +..++.|... +|++.|+.++.+ +.+.++..++..|.+|+ .
T Consensus       119 ~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~  196 (651)
T 3grl_A          119 KQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRS  196 (651)
T ss_dssp             HSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTT
T ss_pred             cCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcC
Confidence            3578899999999885 888888999999999766  3478888854 999999999998 46888999999999999 5


Q ss_pred             CchhHHHHHhcCCHHHHHHHhcCCC----HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCCh
Q 025930          102 NDKLQLKLRGEGGIKALLGMVRCGH----PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS  177 (246)
Q Consensus       102 ~~~~~~~l~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~  177 (246)
                      +++.++.+.-+|+++.|+.++..+.    ..+..-|+.++.||..        .++.++..+.+.|++|.|..++..+.+
T Consensus       197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr--------~N~sNQ~~FrEt~~i~~L~~LL~~~~~  268 (651)
T 3grl_A          197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK--------NNNSNQNFFKEGSYIQRMKPWFEVGDE  268 (651)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred             CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh--------cCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence            6677777777899999999998543    3678899999999994        667899999999999999999865422


Q ss_pred             ------hHHHH---HHHHHHHhccC-------chhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHc----cChhHH
Q 025930          178 ------PIRRH---IELALCHLAQH-------EVNAKDMISGGALWELVRISRDC-SREDIRTLAHRTLT----SSPAFQ  236 (246)
Q Consensus       178 ------~v~~~---a~~aL~~La~~-------~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~----~~~~~~  236 (246)
                            +.-.+   ++.++.-|...       +.+.+.+.++|+++.|++++..+ -+..++..|..+++    .++..+
T Consensus       269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q  348 (651)
T 3grl_A          269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ  348 (651)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence                  22233   34555555442       24678889999999999999854 35666666666554    688999


Q ss_pred             HHHHHhhhc
Q 025930          237 AEMRRLRID  245 (246)
Q Consensus       237 ~e~~~~~~~  245 (246)
                      +++.++.+.
T Consensus       349 ~~fa~~~vp  357 (651)
T 3grl_A          349 DYFASVNAP  357 (651)
T ss_dssp             HHHHHCEES
T ss_pred             HHHhhccCC
Confidence            988876543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.36  E-value=1.5e-11  Score=111.57  Aligned_cols=198  Identities=13%  Similarity=0.095  Sum_probs=160.8

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCC-cc-----------------hHHHH
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSS-EDETIHRVAAGAIANLAMN-ET-----------------NQELI   67 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~-~~~~~~~~a~~~L~~la~~-~~-----------------~~~~i   67 (246)
                      .++..++.++  .+++.. +.+++++.|++.|+.. +|+++.+.+..+|.++... ++                 +.+.+
T Consensus        41 ~Av~~Lk~~s--k~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f  117 (651)
T 3grl_A           41 NAVRALKSLS--KKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIF  117 (651)
T ss_dssp             HHHHHHHHTT--TTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHH
Confidence            4455666664  455444 4578899999999885 5777888899999887433 21                 11233


Q ss_pred             -HhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCch-hHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 025930           68 -MTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDK-LQLKLRG-EGGIKALLGMVRCGHPDVLAQVARGIANFAKC  143 (246)
Q Consensus        68 -~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~-~~~~l~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~  143 (246)
                       .+.++++.|+.++.+ +|..++-+++..|..|+ .+++ +++.+.. .++++.|+.+|+++.+.++..++..|.+|+. 
T Consensus       118 ~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~-  195 (651)
T 3grl_A          118 IKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR-  195 (651)
T ss_dssp             HHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-
T ss_pred             HcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-
Confidence             357889999999987 68999999999999999 4444 7888885 4999999999999999999999999999994 


Q ss_pred             cccccccCChhhhHHHHhCCChHHHHHcccCCCh----hHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcC
Q 025930          144 ESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS----PIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDC  216 (246)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~----~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~  216 (246)
                             ++.+.++.+.-+|+++.|+.++..+..    .+...|+.+|.+|.. |+.+..-|.+.|+++.|..++...
T Consensus       196 -------~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~  266 (651)
T 3grl_A          196 -------SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVG  266 (651)
T ss_dssp             -------TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCC
T ss_pred             -------CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCC
Confidence                   667888888889999999999977644    788999999999987 777999999999999999999743

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.36  E-value=2.3e-12  Score=120.16  Aligned_cols=193  Identities=13%  Similarity=0.111  Sum_probs=147.5

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHH-HHhcCCChHHHHHHHHHHHHhh--CCc
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLST-TAANAEDPQTLRMVAGAIANLC--GND  103 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~~a~~aL~~L~--~~~  103 (246)
                      ..+.|.|+++.|+++ ++..|..||.+|.+++.+++.+..+...|+|..++. ++.+ ++.+++..|+++|+||+  ...
T Consensus        32 ~~~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           32 REDKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHHTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCH
T ss_pred             chhhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCc
Confidence            344567788999986 777899999999999999999999999999987664 5665 68999999999999999  456


Q ss_pred             hhHHHHHhcCCHHHHHHHhcCCC---------------------HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930          104 KLQLKLRGEGGIKALLGMVRCGH---------------------PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus       104 ~~~~~l~~~g~i~~L~~ll~~~~---------------------~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      +....+++.|++++|..++++..                     .++..+++.+|.+||.        .+++..+.+.+.
T Consensus       110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e--------~s~~~~~~v~~~  181 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLAL--------ARDEIHEAVATK  181 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHH--------HCHHHHHHHHTC
T ss_pred             hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh--------CCHHHHHHHHhc
Confidence            88899999999999999885310                     1244577889999985        446778888889


Q ss_pred             CChHHHHHcccCC---ChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHH---HHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          163 GALPWIVQNSNNE---ASPIRRHIELALCHLAQ-HEVNAKDMISGGALW---ELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       163 g~i~~Lv~ll~~~---~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~---~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +.++.|+.++...   ..+++..|+.+|..++. +++..+.+.+.|...   .+..+.. .+.. .+.++...|.+
T Consensus       182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~-~~~la~giL~N  255 (684)
T 4gmo_A          182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDP-RAVMACGVLHN  255 (684)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCT-THHHHHHHHHH
T ss_pred             ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcH-HHHHHHHHHHh
Confidence            9999999988433   46899999999999988 566677777766533   2333333 2222 34555666554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.23  E-value=3.7e-10  Score=89.57  Aligned_cols=91  Identities=12%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccC
Q 025930          114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQH  193 (246)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~  193 (246)
                      .++.|+.++.++++.++..++.+|.++..                   ...++.|..++.++++.+|..++.+|..+.. 
T Consensus       113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  172 (211)
T 3ltm_A          113 AVEPLIKALKDEDWFVRIAAAFALGEIGD-------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-  172 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-
Confidence            34555555555555555555555555441                   1356666666666666677766666666642 


Q ss_pred             chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          194 EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       194 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                               ...++.|..++.++ ++.+|..|.++|..+..
T Consensus       173 ---------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          173 ---------ERVRAAMEKLAETG-TGFARKVAVNYLETHKS  203 (211)
T ss_dssp             ---------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC---
T ss_pred             ---------hhHHHHHHHHHhCC-CHHHHHHHHHHHHhcCC
Confidence                     22566677777644 35577778887766443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.22  E-value=1.4e-09  Score=86.23  Aligned_cols=153  Identities=17%  Similarity=0.194  Sum_probs=129.3

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      +.+.++.|+..|+++ ++.++..|+..|+.+...          ++++.|+.++.+ +++.++..++.+|..+..     
T Consensus        17 ~~~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~~----------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-----   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDD-SYYVRRAAAYALGKIGDE----------RAVEPLIKALKD-EDAWVRRAAADALGQIGD-----   79 (211)
T ss_dssp             CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-----
T ss_pred             CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCc----------cHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-----
Confidence            356799999999985 899999999999988652          478999999997 589999999999998753     


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                           .+.++.|+.++.++++.++..++.+|..+..                   .+.++.|+.++.++++.+|..++.+
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~a  135 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------------ERAVEPLIKALKDEDWFVRIAAAFA  135 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                 3468999999999999999999999999872                   2478999999999999999999999


Q ss_pred             HHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          187 LCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       187 L~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      |..+..          ...++.|..++.+ .+..++..|.++|..
T Consensus       136 L~~~~~----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~  169 (211)
T 3ltm_A          136 LGEIGD----------ERAVEPLIKALKD-EDGWVRQSAADALGE  169 (211)
T ss_dssp             HHHHCC----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred             HHHcCC----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence            999854          2378889999974 456788888888864

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.21  E-value=6.7e-10  Score=87.40  Aligned_cols=155  Identities=15%  Similarity=0.168  Sum_probs=102.1

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      +.++.|+..|+++ ++.++..|+.+|+.+...          +.++.|+.++.+ +++.++..++++|..+..       
T Consensus        45 ~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~-------  105 (201)
T 3ltj_A           45 RAVEPLIKALKDE-DAWVRRAAADALGQIGDE----------RAVEPLIKALKD-EDGWVRQSAAVALGQIGD-------  105 (201)
T ss_dssp             GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-------
T ss_pred             hHHHHHHHHHcCC-CHHHHHHHHHHHHhhCCH----------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-------
Confidence            4566677766654 666666666666666432          356666666665 466677777777766532       


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                         ...++.|+.++.++++.++..++.+|..+..                   .+.++.|..++.++++.+|..|+.+|.
T Consensus       106 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~  163 (201)
T 3ltj_A          106 ---ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------------------ERAVEPLIKALKDEDGWVRQSAADALG  163 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------------------HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence               1356677777777777777777777777651                   246777888887777888888888888


Q ss_pred             HhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhH
Q 025930          189 HLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAF  235 (246)
Q Consensus       189 ~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~  235 (246)
                      .+..          ..+++.|..++.++ +..++..|.++|..+..+
T Consensus       164 ~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~~~  199 (201)
T 3ltj_A          164 EIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLETHKSL  199 (201)
T ss_dssp             HHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC--
T ss_pred             HhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhh
Confidence            7742          12567777777654 456788888888765543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.17  E-value=1.2e-09  Score=85.99  Aligned_cols=152  Identities=17%  Similarity=0.189  Sum_probs=128.0

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      .+..+.+++.|+++ ++.++..|+.+|+.+...          +.++.|+.++.+ +++.++..++.+|..+..      
T Consensus        13 ~~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~-~~~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDD-SYYVRRAAAYALGKIGDE----------RAVEPLIKALKD-EDAWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC------
T ss_pred             CcchHHHHHHhcCC-CHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC------
Confidence            46689999999996 899999999999988653          478999999987 689999999999988753      


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                          ...++.|+.++.++++.++..++.+|..+..                   ...++.|+.++.++++.+|..++.+|
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL  131 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------------ERAVEPLIKALKDEDWFVRIAAAFAL  131 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                2468999999999999999999999999872                   24789999999999999999999999


Q ss_pred             HHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          188 CHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       188 ~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      ..+..          ...++.|..++.+ .+..++..|.++|..
T Consensus       132 ~~~~~----------~~~~~~L~~~l~d-~~~~vr~~A~~aL~~  164 (201)
T 3ltj_A          132 GEIGD----------ERAVEPLIKALKD-EDGWVRQSAADALGE  164 (201)
T ss_dssp             HHHTC----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred             HHhCC----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence            99864          3478889999985 456788888888865

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.08  E-value=1.2e-08  Score=84.32  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=66.7

Q ss_pred             CChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           84 EDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      +++.++..++++|.++. .++...     ...++.|+..+.++++.++..++.+|.++..                   .
T Consensus       103 ~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------------------~  158 (280)
T 1oyz_A          103 KSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-------------------K  158 (280)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------------------
T ss_pred             CCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------------------H
Confidence            45666666777776665 122111     1235666666666777777777776666551                   2


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +.++.|+.++.++++.+|..++++|..+..+..        ..++.|+.++.+ ++..+|..|.++|..
T Consensus       159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d-~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          159 ATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQD-KNEEVRIEAIIGLSY  218 (280)
T ss_dssp             CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence            467777777777777777777777777743211        134555555553 334455555555543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.02  E-value=1.9e-09  Score=100.45  Aligned_cols=161  Identities=17%  Similarity=0.059  Sum_probs=127.0

Q ss_pred             cHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhhccccccccc
Q 025930           72 GIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALL-GMVRCGHPDVLAQVARGIANFAKCESRASTQ  150 (246)
Q Consensus        72 ~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  150 (246)
                      .+.++++.+++ .++..+..|+++|.||+.++.+++.+...|+|.+++ .+|.+++.+++..|+++|+||+..       
T Consensus        35 ~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~-------  106 (684)
T 4gmo_A           35 KILPVLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE-------  106 (684)
T ss_dssp             TTHHHHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh-------
Confidence            45556677887 678899999999999999999999999999988765 568888999999999999999964       


Q ss_pred             CChhhhHHHHhCCChHHHHHcccCCC---------------------hhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHH
Q 025930          151 GTKTGRSLLIDDGALPWIVQNSNNEA---------------------SPIRRHIELALCHLAQ-HEVNAKDMISGGALWE  208 (246)
Q Consensus       151 ~~~~~~~~l~~~g~i~~Lv~ll~~~~---------------------~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~  208 (246)
                      ...+.+..+...|++++|..++....                     .++...++.+|++||. +.+..+.+...|+++.
T Consensus       107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~  186 (684)
T 4gmo_A          107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR  186 (684)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred             cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence            34678888999999999998875321                     1344567889999987 6666778889999999


Q ss_pred             HHHHHhc--CCHHHHHHHHHHHHcc----ChhHHHHHH
Q 025930          209 LVRISRD--CSREDIRTLAHRTLTS----SPAFQAEMR  240 (246)
Q Consensus       209 L~~ll~~--~~~~~~~~~A~~~L~~----~~~~~~e~~  240 (246)
                      |+..+.+  ..+.+++..|..+|..    ++.+...+.
T Consensus       187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~  224 (684)
T 4gmo_A          187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAIT  224 (684)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            9999854  2356778888887753    555555544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.02  E-value=5.7e-08  Score=80.17  Aligned_cols=166  Identities=13%  Similarity=0.051  Sum_probs=126.0

Q ss_pred             HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCch
Q 025930           25 IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDK  104 (246)
Q Consensus        25 i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~  104 (246)
                      +.+.+.++.|+..|+++ ++.++..|+.+|+++..          .+.++.|+.++.+ +++.++..++++|..+...+.
T Consensus        19 ~~~~~~i~~L~~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcC-CHHHHHHHHHHHHccCC----------chHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccc
Confidence            44567899999999985 88999999999999873          2367888899987 579999999999999875433


Q ss_pred             hHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930          105 LQLKLRGEGGIKALLG-MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       105 ~~~~l~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                      ....     .++.|.+ ++.++++.++..++.+|.++...        ++...     ..+++.|+.++.++++.+|..+
T Consensus        87 ~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~--------~~~~~-----~~~~~~L~~~l~d~~~~vR~~a  148 (280)
T 1oyz_A           87 CEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKK--------NPIYS-----PKIVEQSQITAFDKSTNVRRAT  148 (280)
T ss_dssp             THHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--------CGGGH-----HHHHHHHHHHTTCSCHHHHHHH
T ss_pred             cchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc--------CCccc-----HHHHHHHHHHhhCCCHHHHHHH
Confidence            2111     2344442 45678899999999999999731        11111     2468899999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          184 ELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       184 ~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +.+|.++..          .+.++.|+.++.+ ++..+|..|.++|..
T Consensus       149 ~~aL~~~~~----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~  185 (280)
T 1oyz_A          149 AFAISVIND----------KATIPLLINLLKD-PNGDVRNWAAFAINI  185 (280)
T ss_dssp             HHHHHTC-------------CCHHHHHHHHTC-SSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence            999998754          2488999999985 445688888888865

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.67  E-value=7.4e-07  Score=80.43  Aligned_cols=186  Identities=11%  Similarity=0.043  Sum_probs=129.5

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      ..++.+..+++++ ++.++..|+.+|+.++..-.....  ....+|.+..++.+ ++..++..|+.+|..++..-..  .
T Consensus       164 ~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~--~  237 (588)
T 1b3u_A          164 ELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--KSEIIPMFSNLASD-EQDSVRLLAVEACVNIAQLLPQ--E  237 (588)
T ss_dssp             HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--HHTHHHHHHHHHTC-SCHHHHTTHHHHHHHHHHHSCH--H
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHHhH--HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCH--H
Confidence            3466677777764 888999999999999765322221  23567788888877 5688998999999888732111  1


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                      ......+|.+..++.++++.++..++.++..++..           ..........+|.+..++.++++++|..++.+|.
T Consensus       238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~-----------~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  306 (588)
T 1b3u_A          238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA-----------VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK  306 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH-----------HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH-----------hCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            12234678888888888899999999999998842           1111223457899999999999999999999999


Q ss_pred             Hhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          189 HLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       189 ~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      .++.  .++.+........++.+..++++. +..+|..+.++|..+
T Consensus       307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l  351 (588)
T 1b3u_A          307 EFCENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGL  351 (588)
T ss_dssp             HHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGG
T ss_pred             HHHHHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            9976  223222223345667777777644 456677777777654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.64  E-value=2.3e-07  Score=88.20  Aligned_cols=190  Identities=12%  Similarity=0.065  Sum_probs=131.3

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcch--HHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETN--QELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~--~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      +.++.|+..++++ ++.++..|+.+|.+++.....  +..+.  +.++.++..+.+ .++.++..|+.++..++.....+
T Consensus       215 ~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~  290 (852)
T 4fdd_A          215 SFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQD-QDENVALEACEFWLTLAEQPICK  290 (852)
T ss_dssp             HHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHH
T ss_pred             HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHH
Confidence            5678888888875 888999999999999765221  11111  356777777777 57889999999999998765444


Q ss_pred             HHHHh--cCCHHHHHHHhc-----------C-----------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930          107 LKLRG--EGGIKALLGMVR-----------C-----------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus       107 ~~l~~--~g~i~~L~~ll~-----------~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      ..+-.  ...++.++..+.           +           .+..++..++.++..++..           ..+.+. .
T Consensus       291 ~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~-----------~~~~~~-~  358 (852)
T 4fdd_A          291 DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV-----------YRDELL-P  358 (852)
T ss_dssp             HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHH-----------HGGGGH-H
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHh-----------ccHHHH-H
Confidence            43211  134666666662           2           1224688888999988842           112222 2


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhH
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAF  235 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~  235 (246)
                      .++|.+..++.+.+..+|+.|+.+|..++......-.-.-.+.++.++..+. +.+..+|..|.+++..+...
T Consensus       359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence            4678888888888999999999999999875432111112457788888887 45677899999999866554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.51  E-value=9.4e-09  Score=75.51  Aligned_cols=121  Identities=15%  Similarity=0.127  Sum_probs=90.4

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      ....++.|+.+|+++ ++.++..|+.+|+++...           .++.|+.++.+ +++.++..|+++|.++..     
T Consensus        10 ~~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADE-NKWVRRDVSTALSRMGDE-----------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             -----------CCSS-CCCSSSSCCSSTTSCSST-----------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS-----
T ss_pred             ccccHHHHHHHhcCC-CHHHHHHHHHHHHHhCch-----------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC-----
Confidence            356688999999885 777888888888876432           26888888887 689999999999998753     


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                           ...++.|...+.++++.++..++.+|.++..                   ..+++.|..+++++++.++..|..+
T Consensus        72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------------------~~a~~~L~~~l~d~~~~vr~~A~~a  127 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------------------ERVRAAMEKLAETGTGFARKVAVNY  127 (131)
T ss_dssp             -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------------------HHHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                 1247889999999999999999999999872                   1368899999998999999999999


Q ss_pred             HHH
Q 025930          187 LCH  189 (246)
Q Consensus       187 L~~  189 (246)
                      |..
T Consensus       128 L~~  130 (131)
T 1te4_A          128 LET  130 (131)
T ss_dssp             GGG
T ss_pred             HHh
Confidence            865

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.50  E-value=1.1e-06  Score=79.28  Aligned_cols=143  Identities=11%  Similarity=0.031  Sum_probs=95.6

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930           73 IGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT  152 (246)
Q Consensus        73 i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  152 (246)
                      ++.+...+.+ ++..+++.|+.++..++..-..  .......+|.+..++.+++..++..++.++..++.          
T Consensus       443 ~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~----------  509 (588)
T 1b3u_A          443 NSLCMAWLVD-HVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----------  509 (588)
T ss_dssp             HHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------
Confidence            4555566665 4677888888888887632111  11223467777777777788888888888888873          


Q ss_pred             hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                       ...........+|.|..++.++++.+|..++.+|..++..-+.  ........+.|.+++. +.+.++|..|.+++..+
T Consensus       510 -~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~l~~-d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          510 -VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             -HHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred             -hcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHcC-CCchhHHHHHHHHHHHh
Confidence             1112223346788999999888999999999999999763221  2233345566666544 66778899999888754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.47  E-value=4.4e-07  Score=83.07  Aligned_cols=181  Identities=13%  Similarity=0.101  Sum_probs=127.6

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chhHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKLQL  107 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~~~  107 (246)
                      .++.+..++.+. ++.+++.|+.++.++... ++   .+.+.+.++.+..++.+ +|+.++..|+.+|..++.+ ++...
T Consensus       122 l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          122 LCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             HHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccc
Confidence            466788999875 899999999999999754 33   22234567888898986 6899999999999999843 32210


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                      .-...+.++.|+..+...++..+...+.++..++.        .++...     ...++.+..++++.++.++..|++++
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~--------~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i  263 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP--------KDDREA-----QSICERVTPRLSHANSAVVLSAVKVL  263 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC--------CSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC--------CChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            00011235667777777888899888888888773        223222     24578888899999999999999999


Q ss_pred             HHhcc----CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          188 CHLAQ----HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       188 ~~La~----~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      ..+..    +++..+.+. .+..+.|+.++.  ++..+|..|.++|..
T Consensus       264 ~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~  308 (591)
T 2vgl_B          264 MKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINL  308 (591)
T ss_dssp             HHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence            99973    344433332 334566776653  456678888888764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.31  E-value=3.3e-06  Score=80.23  Aligned_cols=189  Identities=15%  Similarity=0.089  Sum_probs=126.2

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCcHHHHHHHHh----------cC-----------CC
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT--QGGIGLLSTTAA----------NA-----------ED   85 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~--~g~i~~L~~ll~----------~~-----------~~   85 (246)
                      +.++.++..+++. ++.++..|+..+.+++.....+..+..  ...+|.++..+.          ..           .+
T Consensus       256 ~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~  334 (852)
T 4fdd_A          256 NIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISD  334 (852)
T ss_dssp             HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CC
T ss_pred             HHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccccc
Confidence            4677888888875 788899999999999987644443321  123555555551          11           11


Q ss_pred             hHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh
Q 025930           86 PQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL  165 (246)
Q Consensus        86 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i  165 (246)
                      ..++..+..+|..++....  ..+.. ..++.+...+.++++.++..|+.++.+++..        ..+.-.... .+.+
T Consensus       335 ~~vr~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~--------~~~~~~~~l-~~~l  402 (852)
T 4fdd_A          335 WNLRKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEG--------CMQGMIPYL-PELI  402 (852)
T ss_dssp             CCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTT--------THHHHGGGH-HHHH
T ss_pred             chHHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--------chHHHHHHH-HHHH
Confidence            2357788888888873211  11111 3567777888888999999999999999852        222222222 3578


Q ss_pred             HHHHHcccCCChhHHHHHHHHHHHhccCchh-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          166 PWIVQNSNNEASPIRRHIELALCHLAQHEVN-AKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       166 ~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      |.++.++.++++.+|..++++|.+++..-.. ...-.-.+.++.|++.+.+ ++..++..|.++|.+
T Consensus       403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~  468 (852)
T 4fdd_A          403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFAT  468 (852)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence            9999999999999999999999999862111 0001112467778888874 456788888888865

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.29  E-value=6.4e-06  Score=66.47  Aligned_cols=175  Identities=13%  Similarity=0.134  Sum_probs=125.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchH-HHHHhcCcHHHHHHHHh-cCCChHHHHHHHHHHHHhhC--CchhHH
Q 025930           33 SLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQ-ELIMTQGGIGLLSTTAA-NAEDPQTLRMVAGAIANLCG--NDKLQL  107 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~-~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~~--~~~~~~  107 (246)
                      .+.+.+.+. +...++.|+..|..+... ++.. ..+  ...++.|...+. + .+..++..|+.++..|+.  .+....
T Consensus        19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd-~~~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKD-SNVVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            477778775 888899999999988654 2210 001  123566777785 5 689999999999999982  222222


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                      .+.  ..++.++..+.++++.++..+..++.+++...         ..      ...+|.+...+.+.++.+|..++.+|
T Consensus        95 ~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---------~~------~~ll~~l~~~l~~~~~~vr~~~l~~l  157 (242)
T 2qk2_A           95 YAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYAST---------SL------EAQQESIVESLSNKNPSVKSETALFI  157 (242)
T ss_dssp             HHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS---------CH------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC---------CH------HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            222  26899999999999999999999999998421         11      13578888899988999999999999


Q ss_pred             HHhcc-C-ch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          188 CHLAQ-H-EV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       188 ~~La~-~-~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      ..+.. . ++  ....+  ...++.|+.++. ++...+|..|.+++..
T Consensus       158 ~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~-D~~~~VR~~A~~~l~~  202 (242)
T 2qk2_A          158 ARALTRTQPTALNKKLL--KLLTTSLVKTLN-EPDPTVRDSSAEALGT  202 (242)
T ss_dssp             HHHHTTCCGGGCCHHHH--HHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccHHHH--HHHHHHHHHHhc-CCChHHHHHHHHHHHH
Confidence            99643 2 33  22222  257888999997 5566789999988865

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.23  E-value=3.3e-05  Score=67.97  Aligned_cols=220  Identities=10%  Similarity=0.003  Sum_probs=143.6

Q ss_pred             hhHHhHhhccccccHHHHHHhCC--HHHHHHHhcC----------------CCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 025930            8 TISVKSEDIRAQSNQEKIVEAGG--LTSLLMLLGS----------------SEDETIHRVAAGAIANLAMNETNQELIMT   69 (246)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~g~--i~~Li~ll~~----------------~~~~~~~~~a~~~L~~la~~~~~~~~i~~   69 (246)
                      +++.+..+...+++|..+.+.++  +++++..++.                +...+++.+++.+++-|+.+++..+.+..
T Consensus       188 ~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~  267 (480)
T 1ho8_A          188 CIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQ  267 (480)
T ss_dssp             HHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred             HHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHh
Confidence            45566666778899999986543  6777643331                11245678899999999999888888887


Q ss_pred             cCcH--HHHHHHHhcCCChHHHHHHHHHHHHhhCCc-----hhHH-HHHhcCCHHHHHHHhcC---CCHHHHHHHHHHHH
Q 025930           70 QGGI--GLLSTTAANAEDPQTLRMVAGAIANLCGND-----KLQL-KLRGEGGIKALLGMVRC---GHPDVLAQVARGIA  138 (246)
Q Consensus        70 ~g~i--~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~-----~~~~-~l~~~g~i~~L~~ll~~---~~~~~~~~a~~~L~  138 (246)
                      .+..  +.|+.+++...-+++.+.++.++.|+....     .... .++..++ +.++..|..   .|+++.+-.-...-
T Consensus       268 ~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e  346 (480)
T 1ho8_A          268 KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKE  346 (480)
T ss_dssp             TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            6643  566777887666889889999999998543     2222 2333444 556666642   46776653332222


Q ss_pred             Hhhcc-cccccc------------cCC---------hhhhHHHHhC--CChHHHHHcccC----------CChhHHHHHH
Q 025930          139 NFAKC-ESRAST------------QGT---------KTGRSLLIDD--GALPWIVQNSNN----------EASPIRRHIE  184 (246)
Q Consensus       139 nL~~~-~~~~~~------------~~~---------~~~~~~l~~~--g~i~~Lv~ll~~----------~~~~v~~~a~  184 (246)
                      .|... ....+.            .++         .++...+.++  ..+..|+.++..          .++.+-..||
T Consensus       347 ~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc  426 (480)
T 1ho8_A          347 ILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVAL  426 (480)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeec
Confidence            22210 000000            011         1222334433  247789999973          3677888899


Q ss_pred             HHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          185 LALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       185 ~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      .=|+.++. +|++|..+.+-|+-..+++++. +++++++..|..++
T Consensus       427 ~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~-h~d~~Vr~~AL~av  471 (480)
T 1ho8_A          427 NDITHVVELLPESIDVLDKTGGKADIMELLN-HSDSRVKYEALKAT  471 (480)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS-CSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHCcchhHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHH
Confidence            99999987 8888888888899999999997 45677788877765

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.23  E-value=5.3e-06  Score=75.89  Aligned_cols=141  Identities=12%  Similarity=0.142  Sum_probs=102.3

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      .+.+.+++++.+. +..+++.+..++.+++.. ++..  +   -.+..+.+-+.+ +|+.++..|+.+|+++. .++...
T Consensus        49 ~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~e~~--~---l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~-~~~~~~  120 (591)
T 2vgl_B           49 SLFPDVVNCMQTD-NLELKKLVYLYLMNYAKSQPDMA--I---MAVNSFVKDCED-PNPLIRALAVRTMGCIR-VDKITE  120 (591)
T ss_dssp             GGHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSHHHH--H---TTHHHHGGGSSS-SSHHHHHHHHHHHHTCC-SGGGHH
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCchHH--H---HHHHHHHHHcCC-CCHHHHHHHHHHHHcCC-hHHHHH
Confidence            3477788888775 777777777777777553 2211  1   124444444555 67888988888888775 444444


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                      .+     ++.+..++.++++.+++.|+.++..+...        +++   .+.+.+.++.+..++.+.++.++..|+.+|
T Consensus       121 ~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~--------~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL  184 (591)
T 2vgl_B          121 YL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDI--------NAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAAL  184 (591)
T ss_dssp             HH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHS--------SCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhh--------Chh---hcccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence            43     57788999999999999999999999842        222   222346789999999999999999999999


Q ss_pred             HHhccC
Q 025930          188 CHLAQH  193 (246)
Q Consensus       188 ~~La~~  193 (246)
                      ..++.+
T Consensus       185 ~~i~~~  190 (591)
T 2vgl_B          185 SEISES  190 (591)
T ss_dssp             HHHTTS
T ss_pred             HHHHhh
Confidence            999874

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.21  E-value=3.5e-05  Score=62.05  Aligned_cols=144  Identities=17%  Similarity=0.176  Sum_probs=107.8

Q ss_pred             CHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           30 GLTSLLMLLG-SSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        30 ~i~~Li~ll~-~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      .++.|...+. +. +..++..|+.+++.++..  +.....+.  ..++.++..+.+ .++.++..+..+|.+++......
T Consensus        57 i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~~  132 (242)
T 2qk2_A           57 LVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSLE  132 (242)
T ss_dssp             HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHH
Confidence            4677888884 64 888899999999999855  22222222  257788888887 57889999999999998654321


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChh--hhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKT--GRSLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~--~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                            ..++.+...+.++++.++..++..+..+...       ..++  ....+  ...+|.|+.++.+.++++|..|.
T Consensus       133 ------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~-------~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~  197 (242)
T 2qk2_A          133 ------AQQESIVESLSNKNPSVKSETALFIARALTR-------TQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSA  197 (242)
T ss_dssp             ------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-------CCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             ------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-------cCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHH
Confidence                  2467788888999999999999999996431       1112  12222  25789999999999999999999


Q ss_pred             HHHHHhcc
Q 025930          185 LALCHLAQ  192 (246)
Q Consensus       185 ~aL~~La~  192 (246)
                      .++..++.
T Consensus       198 ~~l~~l~~  205 (242)
T 2qk2_A          198 EALGTLIK  205 (242)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999975

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.15  E-value=0.00021  Score=60.10  Aligned_cols=176  Identities=14%  Similarity=0.055  Sum_probs=127.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIAN-LAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL  109 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~-la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l  109 (246)
                      +..+++-|.++ +...++.+..-|.. +..|.+....|++.+|+..|+.+.... +.+.+.+++.|+.++......-.-+
T Consensus       120 a~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gv  197 (339)
T 3dad_A          120 VNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGV  197 (339)
T ss_dssp             HHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccch
Confidence            45566777765 45557777888887 677888999999999999999999874 7999999999999998776666555


Q ss_pred             H-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH--------hCC--ChHHHHHccc---CC
Q 025930          110 R-GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI--------DDG--ALPWIVQNSN---NE  175 (246)
Q Consensus       110 ~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~--------~~g--~i~~Lv~ll~---~~  175 (246)
                      + ....|..+..++.+.+..+.+.|+.+|..++.+.        +.+-..+.        +.|  -.+.++.+|+   ..
T Consensus       198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s--------e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~  269 (339)
T 3dad_A          198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS--------ENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA  269 (339)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred             hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC--------cccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence            5 4457888888888888999999999999998642        22222111        112  3678899997   67


Q ss_pred             ChhHHHHHHHHHHHhc---cCchhHHHHH----hCCcHHHHHHHHhcC
Q 025930          176 ASPIRRHIELALCHLA---QHEVNAKDMI----SGGALWELVRISRDC  216 (246)
Q Consensus       176 ~~~v~~~a~~aL~~La---~~~~~~~~i~----~~g~i~~L~~ll~~~  216 (246)
                      +.+++.+|...|-.+-   .+.+.+..+.    +.|.-..+.+.+...
T Consensus       270 D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~  317 (339)
T 3dad_A          270 DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA  317 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred             CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence            8999999877666552   2334344443    456666677767653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.12  E-value=0.00035  Score=53.76  Aligned_cols=156  Identities=18%  Similarity=0.168  Sum_probs=89.8

Q ss_pred             HhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCch
Q 025930           27 EAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDK  104 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~  104 (246)
                      +...++.++.+|+. +-..++..|..++.+++.. ++..+.++     ..|+.+++..+--.+....+.++.-++ .+|+
T Consensus        30 d~~~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            45679999999987 4788999999999999877 54444332     233333332222223233344444443 2232


Q ss_pred             hHHHHH--------------------------------hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930          105 LQLKLR--------------------------------GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT  152 (246)
Q Consensus       105 ~~~~l~--------------------------------~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  152 (246)
                      ....++                                -.+++.-+..++.+++..=+-.|+..+..+..          
T Consensus       104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe----------  173 (253)
T 2db0_A          104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE----------  173 (253)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT----------
T ss_pred             HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc----------
Confidence            221110                                00122334444444443333334433333331          


Q ss_pred             hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHH
Q 025930          153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMI  201 (246)
Q Consensus       153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~  201 (246)
                        +.-..+ .-.+|.|..+|++.|.-+|..+..+|.++|. ++..|+.+.
T Consensus       174 --n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~  220 (253)
T 2db0_A          174 --NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI  220 (253)
T ss_dssp             --TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             --cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH
Confidence              111111 1358899999999999999999999999998 777776654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.00017  Score=58.68  Aligned_cols=186  Identities=12%  Similarity=0.136  Sum_probs=124.5

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHH-hcCC-cchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--C-chhH-
Q 025930           34 LLMLLGSSEDETIHRVAAGAIAN-LAMN-ETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--N-DKLQ-  106 (246)
Q Consensus        34 Li~ll~~~~~~~~~~~a~~~L~~-la~~-~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~-~~~~-  106 (246)
                      +-+.+.+. ++..++.|...|.. +..+ ++....-.+ ...+..|...+....|..++..|+.+|..|+.  . +... 
T Consensus        21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34556675 88888889999999 8633 211100000 12355677778443688899999999999982  2 2332 


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                      .....  .++.++..+++..+.++..+..++..++.+-       ++.. ..-.-...++.|...+.+.++.+|..++.+
T Consensus       100 ~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~-------~~~~-~~~~l~~ll~~l~~~l~~k~~~vk~~al~~  169 (249)
T 2qk1_A          100 DYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYY-------DPLA-SSGRNEDMLKDILEHMKHKTPQIRMECTQL  169 (249)
T ss_dssp             HHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS-------CTTC-TTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-------cccc-cCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            33322  5899999999988999999998888887421       0000 000001357788888888899999999999


Q ss_pred             HHHhccCchh--H--HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          187 LCHLAQHEVN--A--KDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       187 L~~La~~~~~--~--~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      |..++.....  .  ........++.|.+++. ++...+|..|..++..
T Consensus       170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~  217 (249)
T 2qk1_A          170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAI  217 (249)
T ss_dssp             HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence            9999762221  1  12222678999999997 5677789999998874

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.07  E-value=8.8e-06  Score=59.34  Aligned_cols=88  Identities=17%  Similarity=0.111  Sum_probs=73.5

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL  109 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l  109 (246)
                      .++.|+..|+++ ++.++..|+.+|+++...          +.++.|+..+.+ +++.++..++++|.++..        
T Consensus        43 ~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~~----------~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~--------  102 (131)
T 1te4_A           43 AFEPLLESLSNE-DWRIRGAAAWIIGNFQDE----------RAVEPLIKLLED-DSGFVRSGAARSLEQIGG--------  102 (131)
T ss_dssp             THHHHHHGGGCS-CHHHHHHHHHHHGGGCSH----------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS--------
T ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc--------
Confidence            379999999985 899999999999998742          258888898887 679999999999998852        


Q ss_pred             HhcCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025930          110 RGEGGIKALLGMVRCGHPDVLAQVARGIAN  139 (246)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n  139 (246)
                        ...++.|..+++++++.++..|+.+|..
T Consensus       103 --~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          103 --ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence              2357889999999999999999988764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.06  E-value=4.9e-05  Score=60.57  Aligned_cols=177  Identities=12%  Similarity=0.070  Sum_probs=129.9

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-ch
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DK  104 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~  104 (246)
                      .+.+..|+.+|.. +|+.++..+..+|.++-..  ...+..+++ ..++.++.++++ .|+.+.-.|..+|..+-.+ +-
T Consensus        32 e~~l~~L~~LL~d-kD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL  108 (265)
T 3b2a_A           32 KRALFLILELAGE-DDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPM  108 (265)
T ss_dssp             HHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCB
T ss_pred             hhHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCC
Confidence            4568889999977 4899999999999999665  444444443 578899999987 6899988999999999843 32


Q ss_pred             hHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          105 LQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       105 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                      ..+.+..  .+..+.++++++++-+...++..+.-+...        ++.       .+++..+..++.+.+++++..+.
T Consensus       109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~--------~~~-------~~V~~~l~sLl~Skd~~vK~agl  171 (265)
T 3b2a_A          109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPL--------EDS-------KLVRTYINELVVSPDLYTKVAGF  171 (265)
T ss_dssp             CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS--------CCC-------HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcc--------cch-------HHHHHHHHHHHhCCChhHHHHHH
Confidence            2233322  367889999999999999999999988432        111       24677889999989999999999


Q ss_pred             HHHHHhccCc---hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          185 LALCHLAQHE---VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       185 ~aL~~La~~~---~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      .++.+++...   +..+.     .+..+-.++++. ++.+++.|...+.
T Consensus       172 ~~L~eia~~S~D~~i~~~-----I~~eI~elL~~e-D~~l~e~aLd~Le  214 (265)
T 3b2a_A          172 CLFLNMLNSSADSGHLTL-----ILDEIPSLLQND-NEFIVELALDVLE  214 (265)
T ss_dssp             HHHHHHGGGCSSCCCGGG-----TTTTHHHHHTCS-CHHHHHHHHHHHH
T ss_pred             HHHHHhhcccCCHHHHHH-----HHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            9999998732   22222     344455666644 6667777776664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.04  E-value=0.00019  Score=65.92  Aligned_cols=158  Identities=10%  Similarity=0.040  Sum_probs=105.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR  110 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~  110 (246)
                      ....++++.+. +...++-+--.+..++..+..-..+    .+..|.+-+.+ +++.++..|+.+|.++.. ++..    
T Consensus        72 ~~~vik~~~s~-~~~~Krl~Yl~~~~~~~~~~e~~~l----~in~l~kDL~~-~n~~vr~lAL~~L~~i~~-~~~~----  140 (618)
T 1w63_A           72 QLECLKLIASQ-KFTDKRIGYLGAMLLLDERQDVHLL----MTNCIKNDLNH-STQFVQGLALCTLGCMGS-SEMC----  140 (618)
T ss_dssp             HHHHHHHHHSS-SHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHSC-SSSHHHHHHHHHHHHHCC-HHHH----
T ss_pred             HHHHHHHHcCC-chHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCC-CCHhHHHHHHHHHHhcCC-HHHH----
Confidence            44445555543 4444554444555555432111111    24455555565 578888899999999874 3322    


Q ss_pred             hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930          111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                       ...++.+.+++.++++.+++.|+.++..+..        .+++..     .+.++.+..++.+.++.++..|+.+|..+
T Consensus       141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~--------~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i  206 (618)
T 1w63_A          141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIR--------KVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEM  206 (618)
T ss_dssp             -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH--------HCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------HChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence             2357888999999999999999999999984        223322     26788899999999999999999999999


Q ss_pred             ccCc-hhHHHHHhCCcHHHHHHHHhc
Q 025930          191 AQHE-VNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       191 a~~~-~~~~~i~~~g~i~~L~~ll~~  215 (246)
                      +... +....+.  ..++.+++++.+
T Consensus       207 ~~~~~~~~~~~~--~~v~~l~~~L~~  230 (618)
T 1w63_A          207 CERSPDMLAHFR--KLVPQLVRILKN  230 (618)
T ss_dssp             CCSHHHHHHHHH--TTHHHHHHHHHH
T ss_pred             HHhChHHHHHHH--HHHHHHHHHHHH
Confidence            8743 3222332  567778777753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.02  E-value=1.5e-05  Score=69.66  Aligned_cols=186  Identities=11%  Similarity=0.040  Sum_probs=123.2

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcc--hHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNET--NQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      .++.+...+.++ ++.++..++.+|..++....  .+..+. .+.++.++..+++ .++.++..++.++..++.......
T Consensus       218 l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~  294 (462)
T 1ibr_B          218 IMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLA  294 (462)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            356666666654 88889999999999975421  111111 1456677777776 578899999999988874321000


Q ss_pred             ------------------HHHh---cCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930          108 ------------------KLRG---EGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL  159 (246)
Q Consensus       108 ------------------~l~~---~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l  159 (246)
                                        .+++   ...+|.++..+..       ++..++..|+.+|..++..-           .+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~-----------~~~~  363 (462)
T 1ibr_B          295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-----------EDDI  363 (462)
T ss_dssp             HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT-----------TTTH
T ss_pred             HhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc-----------cHHH
Confidence                              0111   2246667777743       23468889999999988421           1122


Q ss_pred             HhCCChHHHHHcccCCChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          160 IDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       160 ~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      . ..++|.+...+.+.+..+|..|+.+|+.++....  .-+.. -...++.++..+.++ +..+|..|.++|..+
T Consensus       364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~  435 (462)
T 1ibr_B          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAAWTVGRI  435 (462)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            2 2467788888888899999999999999987332  11111 156889999999854 577899999988753

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.99  E-value=4.6e-05  Score=70.05  Aligned_cols=180  Identities=12%  Similarity=0.102  Sum_probs=119.1

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC-chh
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKL  105 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~-~~~  105 (246)
                      ...++.+..+|++. ++.+++.|+.+++++... ++.    ++ +.++.+..++.+ .|+.++..|+.+|..++.. ++.
T Consensus       141 ~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~----v~-~~~~~l~~lL~D-~d~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          141 RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPEL----ME-MFLPATKNLLNE-KNHGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGG----GG-GGGGGTTTSTTC-CCHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHH----HH-HHHHHHHHHhCC-CCHhHHHHHHHHHHHHHHhChHH
Confidence            45688889999885 899999999999999654 322    11 466677777776 6789999999999999854 332


Q ss_pred             HHHHHhcCCHHHHHHHhcC---------------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHH
Q 025930          106 QLKLRGEGGIKALLGMVRC---------------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQ  170 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~  170 (246)
                      ...+  ...++.++..|..               .++.++...+.+|+.++.        .+++..+     ...+.|.+
T Consensus       214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~--------~~~~~~~-----~~~~~L~~  278 (618)
T 1w63_A          214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR--------NDDDSSE-----AMNDILAQ  278 (618)
T ss_dssp             HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT--------TCHHHHH-----TTHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC--------CCHHHHH-----HHHHHHHH
Confidence            2222  2568888887753               478899999999999984        3333322     34445555


Q ss_pred             ccc------CCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChhH
Q 025930          171 NSN------NEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAF  235 (246)
Q Consensus       171 ll~------~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~  235 (246)
                      ++.      +.+..+...|+.++..+..++..+.     .++..|..++.+ ++..+|..|..+|..+...
T Consensus       279 l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~  343 (618)
T 1w63_A          279 VATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLN-NDKNIRYVALTSLLKTVQT  343 (618)
T ss_dssp             HHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTC-SSTTTHHHHHHHHHHHHHH
T ss_pred             HHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhC-CCCchHHHHHHHHHHHHhh
Confidence            442      2245677788888877765433222     345667777664 3345677777776654433

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.88  E-value=2.7e-05  Score=67.91  Aligned_cols=157  Identities=6%  Similarity=0.000  Sum_probs=105.2

Q ss_pred             hCCHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhhCC-
Q 025930           28 AGGLTSLLMLLGSSE-DETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLCGN-  102 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~-~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~~~-  102 (246)
                      .+.+|.|++.++++. ++.++..|+.+|..++.+-  +.-.... ...++.+...+.+.+ ++.++..|+.++.++... 
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            356899999998853 7788888999999997541  1111111 124677778888743 688999999999987632 


Q ss_pred             chhH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930          103 DKLQ-LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR  181 (246)
Q Consensus       103 ~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~  181 (246)
                      ...- ......-.++.+...+.+++++++..++.+|..++...       .+.... ....+.++.++..+.+.+++++.
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~  277 (462)
T 1ibr_B          206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY-------YQYMET-YMGPALFAITIEAMKSDIDEVAL  277 (462)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC-------GGGCTT-TTTTTHHHHHHHHHHCSSHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHcCCchHHHH
Confidence            1110 00011113566667777888999999999999988421       011111 11115677788888888999999


Q ss_pred             HHHHHHHHhccC
Q 025930          182 HIELALCHLAQH  193 (246)
Q Consensus       182 ~a~~aL~~La~~  193 (246)
                      .++..+..++..
T Consensus       278 ~a~~~l~~~~~~  289 (462)
T 1ibr_B          278 QGIEFWSNVCDE  289 (462)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.83  E-value=0.00045  Score=58.06  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=115.6

Q ss_pred             hccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHH
Q 025930           15 DIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVA   93 (246)
Q Consensus        15 ~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~   93 (246)
                      +....+....++..||+..|+.....+ +..++..+.+++.++..+...-..+++ ...|.++..++.+ .+..+.+.|+
T Consensus       146 ~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s-~~~~V~k~AL  223 (339)
T 3dad_A          146 FQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCAS-LSRLVVKTAL  223 (339)
T ss_dssp             HHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHH
T ss_pred             hhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcC-ccHHHHHHHH
Confidence            445778889999999999999999887 788899999999999999878877774 4567788888887 6799999999


Q ss_pred             HHHHHhhCC-chhHHHHHhc--------C--CHHHHHHHhc---CCCHHHHHHHHHHHHHhhcccccccccCCh---hhh
Q 025930           94 GAIANLCGN-DKLQLKLRGE--------G--GIKALLGMVR---CGHPDVLAQVARGIANFAKCESRASTQGTK---TGR  156 (246)
Q Consensus        94 ~aL~~L~~~-~~~~~~l~~~--------g--~i~~L~~ll~---~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~---~~~  156 (246)
                      ..|..++.+ +.+...+.++        |  ....++.+|.   +.+.+++.++...+-.+-...     ++.+   +..
T Consensus       224 ~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~a-----pd~d~~~di~  298 (339)
T 3dad_A          224 KLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAAL-----PDQDSFYDVT  298 (339)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHC-----SSHHHHHHHH
T ss_pred             HHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcC-----CChhHHHHHH
Confidence            999999843 4344333321        1  2678999997   678999999987776554321     1112   233


Q ss_pred             HHHHhCCChHHHHHcccCC--ChhHHHH
Q 025930          157 SLLIDDGALPWIVQNSNNE--ASPIRRH  182 (246)
Q Consensus       157 ~~l~~~g~i~~Lv~ll~~~--~~~v~~~  182 (246)
                      ..+.+.|.=..+.+.+...  +++++++
T Consensus       299 d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          299 DALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            3344455445566666655  5565554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.81  E-value=0.00097  Score=53.19  Aligned_cols=168  Identities=12%  Similarity=-0.010  Sum_probs=120.8

Q ss_pred             hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      .+++.++.++-.. +.--....-...++.++.++++. |+.+.-.|.++|..+-.+ +-....+..  .+..+..++++ 
T Consensus        51 ~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~-  126 (265)
T 3b2a_A           51 LRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLES-  126 (265)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcC-
Confidence            3556666665322 11122333356799999999886 888888899999999666 545555554  56788888886 


Q ss_pred             CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      .++-+..+++..+..+.--.. ..     +++..+..++.|++.+++..+.+++.|++...      ++++.-     .+
T Consensus       127 ~~~il~~eaae~Lgklkv~~~-~~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S------~D~~i~-----~~  189 (265)
T 3b2a_A          127 PDDMMRIETIDVLSKLQPLED-SK-----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS------ADSGHL-----TL  189 (265)
T ss_dssp             CCHHHHHHHHHHHHHCCBSCC-CH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC------SSCCCG-----GG
T ss_pred             CCchHHHHHHHHhCcCCcccc-hH-----HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc------CCHHHH-----HH
Confidence            578889999999999831111 12     23567888889999999999999999999642      222211     24


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQHE  194 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~  194 (246)
                      ++.-+-.+++++|+.+++.|+.+|-.+.+.+
T Consensus       190 I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          190 ILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            5666778888999999999999999997743

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.78  E-value=0.00036  Score=65.87  Aligned_cols=184  Identities=11%  Similarity=0.081  Sum_probs=123.0

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cc-hHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCch---
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ET-NQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDK---  104 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~---  104 (246)
                      .++.+...+.+. ++.++..++.+|..+... ++ .... .....++.++..+.+ .++.++..++.++.+++....   
T Consensus       218 il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~  294 (876)
T 1qgr_A          218 IMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLA  294 (876)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHH-HTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHh
Confidence            566777777664 788888899999998754 22 2222 223567777777766 568888899999888874310   


Q ss_pred             -------------------hHHHHHhcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHH
Q 025930          105 -------------------LQLKLRGEGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSL  158 (246)
Q Consensus       105 -------------------~~~~l~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~  158 (246)
                                         ...... ...++.++..+..       ++..++..+..++..++..           ..+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-----------~~~~  362 (876)
T 1qgr_A          295 IEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-----------CEDD  362 (876)
T ss_dssp             HHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-----------HGGG
T ss_pred             hhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-----------CcHh
Confidence                               000011 2346677777752       3456888999999988842           1122


Q ss_pred             HHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCc--hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          159 LIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE--VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       159 l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +. ..+++.+...+.+.+..+|..++.+|..++...  +...... ...++.++..+.+ ++..+|..|.+++..
T Consensus       363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d-~~~~vr~~a~~~l~~  434 (876)
T 1qgr_A          363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD-PSVVVRDTAAWTVGR  434 (876)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC-SSHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            22 246777778888889999999999999998743  2222222 3478888888874 456788888888864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.76  E-value=0.00021  Score=70.42  Aligned_cols=184  Identities=11%  Similarity=0.046  Sum_probs=120.9

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh--CCch--
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC--GNDK--  104 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~--~~~~--  104 (246)
                      ..++.|++.|.+. ++.+|..|+.+|++++..-.. ..+.  ..++.++..+.+ +++.++..++.+|..++  ..+.  
T Consensus        48 ~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           48 KVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCccc
Confidence            4588899999874 888999999999999866222 1111  245677777776 46778888999999887  2222  


Q ss_pred             ---hHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930          105 ---LQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR  180 (246)
Q Consensus       105 ---~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~  180 (246)
                         ..... -...+|.|+..+. ++++.++..|+.++..++..-+       ...... . ...++.+...+.++++.+|
T Consensus       123 ~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~-------~~l~~~-~-~~ll~~l~~~L~~~~~~vR  192 (1230)
T 1u6g_C          123 GSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG-------GLLVNF-H-PSILTCLLPQLTSPRLAVR  192 (1230)
T ss_dssp             -CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC-------SSCTTT-H-HHHHHHHGGGGGCSSHHHH
T ss_pred             ccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH-------hHHHHH-H-HHHHHHHHHHHcCCcHHHH
Confidence               11111 2236888999998 5889999999999999884210       000000 0 2356778888888899999


Q ss_pred             HHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       181 ~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      ..|+.+|..++.....  .+ -...++.++..+........+..|..++.
T Consensus       193 ~~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~  239 (1230)
T 1u6g_C          193 KRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA  239 (1230)
T ss_dssp             HHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence            9999999999874322  12 23467888888765433233444444443

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.00021  Score=58.06  Aligned_cols=152  Identities=14%  Similarity=0.143  Sum_probs=104.2

Q ss_pred             CHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCCc---chH-HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--C
Q 025930           30 GLTSLLMLL-GSSEDETIHRVAAGAIANLAMNE---TNQ-ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--N  102 (246)
Q Consensus        30 ~i~~Li~ll-~~~~~~~~~~~a~~~L~~la~~~---~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~  102 (246)
                      .++.|...+ +.. +..++..|+.+|+.++.+-   ... .....  .+|.++..+.+ ..+.++..+..+|..++.  +
T Consensus        61 ~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~  136 (249)
T 2qk1_A           61 LLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKE-KKPSVIEAIRKALLTICKYYD  136 (249)
T ss_dssp             HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcc
Confidence            377788888 454 8888899999999998432   111 22221  47788888876 457888888888888872  2


Q ss_pred             chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC-hhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930          103 DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT-KTGRSLLIDDGALPWIVQNSNNEASPIRR  181 (246)
Q Consensus       103 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~  181 (246)
                      +.. ..-.-...++.++..+.++++.++..++..|..+....      .. +..-........+|.+..++.+.++++|.
T Consensus       137 ~~~-~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~------~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~  209 (249)
T 2qk1_A          137 PLA-SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE------KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRT  209 (249)
T ss_dssp             TTC-TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC------CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHH
T ss_pred             ccc-cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            211 00000124677888889889999999999999887421      00 01101112246899999999999999999


Q ss_pred             HHHHHHHHhcc
Q 025930          182 HIELALCHLAQ  192 (246)
Q Consensus       182 ~a~~aL~~La~  192 (246)
                      .|..++..++.
T Consensus       210 aA~~~l~~i~~  220 (249)
T 2qk1_A          210 IGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.70  E-value=0.0009  Score=58.92  Aligned_cols=171  Identities=11%  Similarity=0.078  Sum_probs=117.1

Q ss_pred             HhHhhccccccHHHHHHhCCH--HHHHHHhcCCCCHHHHHHHHHHHHHhcCCc-ch-----HHHHHhcCcHHHHHHHHhc
Q 025930           11 VKSEDIRAQSNQEKIVEAGGL--TSLLMLLGSSEDETIHRVAAGAIANLAMNE-TN-----QELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus        11 ~~~~~~~~~~~~~~i~~~g~i--~~Li~ll~~~~~~~~~~~a~~~L~~la~~~-~~-----~~~i~~~g~i~~L~~ll~~   82 (246)
                      .+=.++++++-.+.+.+.+..  +.|+..++...-+.+.+.+..+|.|+.... ..     .+.++..++++ +++.+..
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhh
Confidence            344457787777777777754  788888888767888888999999997653 11     22333445544 5555543


Q ss_pred             --CCChHHHHHHHHHH-------HHhhCCchhH------------------------HHHHh--cCCHHHHHHHhcC---
Q 025930           83 --AEDPQTLRMVAGAI-------ANLCGNDKLQ------------------------LKLRG--EGGIKALLGMVRC---  124 (246)
Q Consensus        83 --~~~~~~~~~a~~aL-------~~L~~~~~~~------------------------~~l~~--~g~i~~L~~ll~~---  124 (246)
                        ..|+++.+..-...       ..+++.++..                        .++.+  ...++.|+++|.+   
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence              35666654332211       1122122221                        22222  1257889999973   


Q ss_pred             -------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930          125 -------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       125 -------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                             .++.+..-||.-++.++.        ..|.+|..+.+.|+=+.+++++.++|++||++|+.|+..+
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr--------~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVE--------LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  474 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHH--------HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHH--------HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence                   367788999999999995        4579999999999999999999999999999999998765

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.65  E-value=0.00059  Score=64.29  Aligned_cols=185  Identities=12%  Similarity=0.127  Sum_probs=122.8

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-c-chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh--
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-E-TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL--  105 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~--  105 (246)
                      .++.|...+.+. ++.++..++.+|..++.. + .....+. ...++.+...+.+ .++.++..++.++..++.....  
T Consensus       225 ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~  301 (861)
T 2bpt_A          225 LMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIA  301 (861)
T ss_dssp             HHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhh
Confidence            466677777664 788899999999998755 2 2222222 1456666666666 5788999999999888743211  


Q ss_pred             ----------------HHHHHhcCCHHHHHHHhcCC-------CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930          106 ----------------QLKLRGEGGIKALLGMVRCG-------HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus       106 ----------------~~~l~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                                      ....+ ...++.++..+...       +..++..+..+|..++..           ..+.+. .
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-----------~~~~~~-~  368 (861)
T 2bpt_A          302 YELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-----------CGNHIL-E  368 (861)
T ss_dssp             HHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-----------HGGGGH-H
T ss_pred             hhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-----------ccHhHH-H
Confidence                            11111 34677888888642       357888999999998842           111111 1


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhccCc--hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQHE--VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      ..++.+.+.+.+.+..+|+.|+.++..++...  +...... ...++.|+..+.+ .+..+|..+.+++...
T Consensus       369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d-~~~~vr~~a~~~l~~l  438 (861)
T 2bpt_A          369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMND-QSLQVKETTAWCIGRI  438 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCC-CcHHHHHHHHHHHHHH
Confidence            35677777888889999999999999998743  2222222 2467788888875 4566788888777643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.62  E-value=0.00045  Score=65.09  Aligned_cols=189  Identities=12%  Similarity=0.105  Sum_probs=120.3

Q ss_pred             hCCHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 025930           28 AGGLTSLLMLLGSS------EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG  101 (246)
Q Consensus        28 ~g~i~~Li~ll~~~------~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~  101 (246)
                      ...+|.++..+...      ++..++..|..+|..++..-..  .+. ...++.+...+.+ .+...++.++.++..++.
T Consensus       323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~~l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-EPVLEFVEQNITA-DNWRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-HHHHHHHHHHcCC-CChhHHHHHHHHHHHHHc
Confidence            45688888888753      1246788899999988764211  111 1134555566666 568899999999999984


Q ss_pred             Cc--hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhh-hHHHHhCCChHHHHHcccCCChh
Q 025930          102 ND--KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTG-RSLLIDDGALPWIVQNSNNEASP  178 (246)
Q Consensus       102 ~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~  178 (246)
                      ..  +.-...+. ..++.++..+.++++.++..++.++..++..-.       ++. .... -...+|.++..+.++ +.
T Consensus       399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~-~~~~l~~l~~~l~~~-~~  468 (861)
T 2bpt_A          399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVA-------ESIDPQQH-LPGVVQACLIGLQDH-PK  468 (861)
T ss_dssp             SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG-------GGSCTTTT-HHHHHHHHHHHHTSC-HH
T ss_pred             CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh-------hhcCCHHH-HHHHHHHHHHHhccC-hH
Confidence            42  22222222 368888899988999999999999999884200       000 0001 123577888888765 99


Q ss_pred             HHHHHHHHHHHhccCc-----hhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHcc
Q 025930          179 IRRHIELALCHLAQHE-----VNAKDMISGGALWELVRISRDC-SREDIRTLAHRTLTS  231 (246)
Q Consensus       179 v~~~a~~aL~~La~~~-----~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~~  231 (246)
                      ++..++++|.+++..-     +.-.... ...++.|+..+... .+..++..+.+++..
T Consensus       469 v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~  526 (861)
T 2bpt_A          469 VATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence            9999999999997521     1100111 23466777887643 335667777777653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.55  E-value=0.006  Score=58.20  Aligned_cols=169  Identities=20%  Similarity=0.131  Sum_probs=99.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKL  109 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l  109 (246)
                      ++.|...+... +...+..|+.+|+.+-.+..+...      +..|+..+.+..+..+++.++.+|..+. .+++-...+
T Consensus       474 ~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~a------i~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~l  546 (963)
T 4ady_A          474 YEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEA------IHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDL  546 (963)
T ss_dssp             HHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHH------HHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHH
Confidence            77788888764 555566678888877444333322      2333333333345556666666666554 222221111


Q ss_pred             -----------HhcC----------------CHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930          110 -----------RGEG----------------GIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID  161 (246)
Q Consensus       110 -----------~~~g----------------~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~  161 (246)
                                 +++|                .|+.|+..+. +.+.+++..|+.+|+.+..        +.+        
T Consensus       547 i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~--------g~~--------  610 (963)
T 4ady_A          547 ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL--------RDY--------  610 (963)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--------SSC--------
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--------CCH--------
Confidence                       1111                1343444443 4566788888888777663        222        


Q ss_pred             CCChHHHHH-cccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          162 DGALPWIVQ-NSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       162 ~g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                       ..++.++. +++..++.+|..+..+|+.++....+.+      ++..|..+.. +++..++..|..+|.
T Consensus       611 -e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~-D~d~~Vrq~Ai~ALG  672 (963)
T 4ady_A          611 -TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTK-DPVDFVRQAAMIALS  672 (963)
T ss_dssp             -SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHcc-CCCHHHHHHHHHHHH
Confidence             35777777 4466799999999999999976333311      4556666766 556777878877776

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.52  E-value=0.0053  Score=56.35  Aligned_cols=141  Identities=14%  Similarity=0.070  Sum_probs=100.4

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      .+.+..++++.+. +...++-+--++..++..+..--.+    .+..+.+=+.+ +++.++..|+.+|+++.. ++... 
T Consensus        74 ~~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~-~n~~ir~lALr~L~~i~~-~e~~~-  145 (621)
T 2vgl_A           74 FGHMEAVNLLSSN-RYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLAS-RNPTFMGLALHCIANVGS-REMAE-  145 (621)
T ss_dssp             SCHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHS-CCHHHHHHHHHHHHHHCC-HHHHH-
T ss_pred             hhHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCC-CCHHHHHHHHHHhhccCC-HHHHH-
Confidence            3467777888775 7776776666676776553211111    23344444555 578888899999998854 44333 


Q ss_pred             HHhcCCHHHHHHHh--cCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          109 LRGEGGIKALLGMV--RCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       109 l~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                          ..++.+.+.+  .+.++-+++.|+-++..+...        +++   .+...+.++.+..++.+.++.++..|+.+
T Consensus       146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~--------~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~  210 (621)
T 2vgl_A          146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT--------SPD---LVPMGDWTSRVVHLLNDQHLGVVTAATSL  210 (621)
T ss_dssp             ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH--------CGG---GCCCCSCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh--------Chh---hcCchhHHHHHHHHhCCCCccHHHHHHHH
Confidence                2467888898  788999999999999998841        122   22224789999999998999999999999


Q ss_pred             HHHhcc
Q 025930          187 LCHLAQ  192 (246)
Q Consensus       187 L~~La~  192 (246)
                      +..++.
T Consensus       211 l~~i~~  216 (621)
T 2vgl_A          211 ITTLAQ  216 (621)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.36  E-value=0.0039  Score=53.20  Aligned_cols=185  Identities=12%  Similarity=0.064  Sum_probs=108.9

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKL  109 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l  109 (246)
                      +..|.+-++++ ++.++-.|.++|+++...+-.+ .     ..+.+.+.+.+ .++-+++.|+-+...|. .+++..   
T Consensus       106 ~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m~~-~-----l~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~~pe~v---  174 (355)
T 3tjz_B          106 TSSLTKDMTGK-EDSYRGPAVRALCQITDSTMLQ-A-----IERYMKQAIVD-KVPSVSSSALVSSLHLLKCSFDVV---  174 (355)
T ss_dssp             HHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTTHH-H-----HHHHHHHHHTC-SSHHHHHHHHHHHHHHTTTCHHHH---
T ss_pred             HHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHHHH-H-----HHHHHHHHcCC-CCHHHHHHHHHHHHHHhccCHHHH---
Confidence            56677777775 7778888888888887665211 1     23455666776 57899999988888887 445432   


Q ss_pred             HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc-------cC---ChhhhHHHHh--------------CCCh
Q 025930          110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST-------QG---TKTGRSLLID--------------DGAL  165 (246)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~-------~~---~~~~~~~l~~--------------~g~i  165 (246)
                       + +.+..+-+++.+.++.++.+|..++..++..+.....       .+   ++-..-.++.              ...+
T Consensus       175 -~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~  252 (355)
T 3tjz_B          175 -K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLF  252 (355)
T ss_dssp             -H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred             -H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHH
Confidence             2 5788888888888888888888888888753210000       00   1111111111              2345


Q ss_pred             HHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          166 PWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       166 ~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      +.+...+++.++.|...|+++|..+...+..  ..  ..++..|..++.+ ++..+|-.|.+.|....
T Consensus       253 ~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~~--~~a~~~L~~fLss-~d~niryvaLr~L~~l~  315 (355)
T 3tjz_B          253 DFIESCLRNKHEMVVYEAASAIVNLPGCSAK--EL--APAVSVLQLFCSS-PKAALRYAAVRTLNKVA  315 (355)
T ss_dssp             ----CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHS-SSSSSHHHHHHCC----
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHhccCCCHH--HH--HHHHHHHHHHHcC-CCchHHHHHHHHHHHHH
Confidence            5666677777899999999999998652221  11  3345566677764 44557888887776533

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.35  E-value=0.0017  Score=63.98  Aligned_cols=186  Identities=9%  Similarity=0.028  Sum_probs=121.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHH-HHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQE-LIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKL  109 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l  109 (246)
                      ++.|+.-+.++ |+.++..|...|.+....+.... .-.....++.++..+.+ .++.++..|+.+|.+++..-.. ..+
T Consensus         8 l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~-~~~   84 (1230)
T 1u6g_C            8 ISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE-YQV   84 (1230)
T ss_dssp             HHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred             HHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence            67888888886 88889888888888754431100 00011246677777776 6899999999999999843211 111


Q ss_pred             HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChh-----hhHHHHhCCChHHHHHccc-CCChhHHHHH
Q 025930          110 RGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKT-----GRSLLIDDGALPWIVQNSN-NEASPIRRHI  183 (246)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~-----~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a  183 (246)
                        ..+++.++..+.++++.++..++.++..++..-      + +.     .... .....+|.|...+. .+++.++..|
T Consensus        85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l------~-~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~a  154 (1230)
T 1u6g_C           85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL------P-PASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEA  154 (1230)
T ss_dssp             --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHC------C------CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC------C-CcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHH
Confidence              124677888888888899999999999887531      1 11     0111 12357899999998 4789999999


Q ss_pred             HHHHHHhccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          184 ELALCHLAQH-EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       184 ~~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      +.+|..++.. .+.-.. .....++.+...+.+ .+..+|..|..++..
T Consensus       155 l~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~  201 (1230)
T 1u6g_C          155 LDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS-PRLAVRKRTIIALGH  201 (1230)
T ss_dssp             HHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC-SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHH
Confidence            9999999741 110000 012245566666664 445788888887763

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.34  E-value=0.0021  Score=59.13  Aligned_cols=184  Identities=13%  Similarity=0.109  Sum_probs=109.3

Q ss_pred             hCCHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC-Cch
Q 025930           28 AGGLTSLLMLL--GSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG-NDK  104 (246)
Q Consensus        28 ~g~i~~Li~ll--~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~  104 (246)
                      ...++.+.+.+  .+. ++.+++.|+.++.++.....  +.+...+.++.+..++.+ .|+.+...|+.++..++. ++.
T Consensus       145 ~~l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          145 EAFAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLND-QHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             HHHTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCC-CCccHHHHHHHHHHHHHHhChH
Confidence            45678888888  664 89999999999999975321  122224678899999976 689999999999999983 433


Q ss_pred             hHHHHHhcCCHHHHHHHhc----CC-------------CHHHHHHHHHHHHHhhcccccccccCChhhhH----------
Q 025930          105 LQLKLRGEGGIKALLGMVR----CG-------------HPDVLAQVARGIANFAKCESRASTQGTKTGRS----------  157 (246)
Q Consensus       105 ~~~~l~~~g~i~~L~~ll~----~~-------------~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~----------  157 (246)
                      .-.     ..++.++..|.    .+             ++..+...+..+..++..+       +++.++          
T Consensus       221 ~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-------d~~~~~~l~~~L~~il  288 (621)
T 2vgl_A          221 EFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-------DPAVRGRLTECLETIL  288 (621)
T ss_dssp             HHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-------SHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHH
Confidence            110     11222221111    00             2334444433333333210       001000          


Q ss_pred             ------------------------------------HHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHH
Q 025930          158 ------------------------------------LLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMI  201 (246)
Q Consensus       158 ------------------------------------~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~  201 (246)
                                                          .+. ..++..|..++.+.++.+|..++.+|..++........+.
T Consensus       289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~  367 (621)
T 2vgl_A          289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK  367 (621)
T ss_dssp             HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH
T ss_pred             HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH
Confidence                                                001 1245677788887889999999999999987432222222


Q ss_pred             hCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          202 SGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       202 ~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                        .....++..++.+++..++..|.++|.
T Consensus       368 --~~~~~i~~~L~~d~d~~Ir~~aL~lL~  394 (621)
T 2vgl_A          368 --THIETVINALKTERDVSVRQRAVDLLY  394 (621)
T ss_dssp             --TTHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhccCCCHhHHHHHHHHHH
Confidence              245566676763445667888887774

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.28  E-value=0.0013  Score=62.15  Aligned_cols=189  Identities=10%  Similarity=0.049  Sum_probs=120.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhhC--CchhHHHH
Q 025930           33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLCG--NDKLQLKL  109 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~~--~~~~~~~l  109 (246)
                      .|++.|.++ ++.+ ..++.+++.++..+.....  -...++.+...+.+.. ++.++..++.+|..++.  .++.-.. 
T Consensus        94 ~ll~~l~~~-~~~~-~~~~~~l~~i~~~~~~~~~--w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-  168 (876)
T 1qgr_A           94 YVLHTLGTE-TYRP-SSASQCVAGIACAEIPVNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-  168 (876)
T ss_dssp             HHHHHTTTC-CSSS-CHHHHHHHHHHHHHGGGTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-
T ss_pred             HHHHHhCCC-cHHH-HHHHHHHHHHHHhhCcccc--cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-
Confidence            378888775 5556 7788888888654211000  1235778888888742 78899999999999983  2221000 


Q ss_pred             HhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          110 RGEGGIKALLGMVRCG--HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       110 ~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                      .-...++.+...+.++  +..++..++.++.++...-       .+...........++.+..++.++++++|..++.+|
T Consensus       169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-------~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l  241 (876)
T 1qgr_A          169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-------KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL  241 (876)
T ss_dssp             GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-------HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            1123466677777766  6889999999999987421       011111111112577777788888999999999999


Q ss_pred             HHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          188 CHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       188 ~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      ..++. .++.-........++.++..+. +.++.++..|.+.+....+
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~  288 (876)
T 1qgr_A          242 VKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHH
Confidence            99976 4433233344467777777776 4456667777766654433

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.05  E-value=0.085  Score=50.77  Aligned_cols=197  Identities=14%  Similarity=0.120  Sum_probs=132.2

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--CcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAM--NETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      +.+|.++..+.+. +..++..|-.++..+..  +++.- .    ..+|.|+..+.+...=+....|+.++..|+.....+
T Consensus        95 ~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~a~-~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           95 QLVPAICTNAGNK-DKEIQSVASETLISIVNAVNPVAI-K----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGGGH-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCHHHH-H----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence            5788999998775 67788887777777743  33332 2    247888887876444467778999999998432222


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc-cCChhhhHHHHhCC----------------------
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAST-QGTKTGRSLLIDDG----------------------  163 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~-~~~~~~~~~l~~~g----------------------  163 (246)
                      -...-...||.+...+-+..+++++.|..++..+|..-++.++ +..+...+.|.+-.                      
T Consensus       169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~  248 (986)
T 2iw3_A          169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPAT  248 (986)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHH
T ss_pred             HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchh
Confidence            2222234789999999999999999999999999976444444 11122222222111                      


Q ss_pred             ---ChHHHHHcccCCChhHHHHHHHHHHHhcc---CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          164 ---ALPWIVQNSNNEASPIRRHIELALCHLAQ---HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       164 ---~i~~Lv~ll~~~~~~v~~~a~~aL~~La~---~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                         .+|.|.+-|......++..++..+-|||.   ++.....| -...+|.|.+....-..++.|+.|.+++...
T Consensus       249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence               13444445555578889999999999987   44333333 3567888888887778888999999888754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.96  E-value=0.0059  Score=58.27  Aligned_cols=94  Identities=12%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930           75 LLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMV-RCGHPDVLAQVARGIANFAKCESRASTQGT  152 (246)
Q Consensus        75 ~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  152 (246)
                      .|+..+.+..+..++..|+.+|..+. .++         ..++.++..+ .+.++.++..++.+|+.++.        ++
T Consensus       581 ~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~a--------Gn  643 (963)
T 4ady_A          581 RLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA--------GK  643 (963)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS--------SS
T ss_pred             HHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc--------CC
Confidence            34444444345667777777777665 333         2456666644 47899999999999999984        22


Q ss_pred             hhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          153 KTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       153 ~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      +.       ..++..|..++++.++.|+..|..+|..+..
T Consensus       644 ~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          644 GL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             CC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             Cc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            21       2357788888999999999999999999965

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.92  E-value=0.023  Score=45.84  Aligned_cols=140  Identities=11%  Similarity=0.036  Sum_probs=104.5

Q ss_pred             HHHhcCCcchHHHHHhcCcHHHHHHHHhcCC----ChHHHHHHHHHHHHhh--CCchhHHHHHhcCCHHHHHHHhcCCCH
Q 025930           54 IANLAMNETNQELIMTQGGIGLLSTTAANAE----DPQTLRMVAGAIANLC--GNDKLQLKLRGEGGIKALLGMVRCGHP  127 (246)
Q Consensus        54 L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~aL~~L~--~~~~~~~~l~~~g~i~~L~~ll~~~~~  127 (246)
                      |--+|.+++.|..+.+.+..-.|...+....    .+.++-.+++.+..|.  .+++....+.+.+++|.+++.+..+++
T Consensus        80 lQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gse  159 (268)
T 2fv2_A           80 LQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSE  159 (268)
T ss_dssp             HHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred             HHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccH
Confidence            3345899999999999887767777776432    2456778899999998  677888888999999999999999988


Q ss_pred             HHHHHHHHHHHHhhcccccccccCChhhhHHHHhC--------CChHHHHH-cccCCChhHHHHHHHHHHHhccCchhHH
Q 025930          128 DVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD--------GALPWIVQ-NSNNEASPIRRHIELALCHLAQHEVNAK  198 (246)
Q Consensus       128 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~--------g~i~~Lv~-ll~~~~~~v~~~a~~aL~~La~~~~~~~  198 (246)
                      --+.-|..++..+-.         ++.+-.-+...        .++..+|. +...+++++-++..+|-..|+.++..|+
T Consensus       160 lSKtvAtfIlqKIL~---------dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~  230 (268)
T 2fv2_A          160 LSKTVATFILQKILL---------DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRARE  230 (268)
T ss_dssp             HHHHHHHHHHHHHHH---------SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHhc---------cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHH
Confidence            877777766665542         23333333221        23334433 4566799999999999999999999998


Q ss_pred             HHHh
Q 025930          199 DMIS  202 (246)
Q Consensus       199 ~i~~  202 (246)
                      .+.+
T Consensus       231 aL~~  234 (268)
T 2fv2_A          231 ALRQ  234 (268)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.65  E-value=0.11  Score=44.25  Aligned_cols=138  Identities=10%  Similarity=0.084  Sum_probs=96.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR  110 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~  110 (246)
                      .+..+.++.+. |...++-.--.+.+++..++.  .+.   ++..|.+=+.+ +++-++-.|+++|+++...+ ..+.  
T Consensus        70 f~~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~e--~iL---v~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~~-m~~~--  139 (355)
T 3tjz_B           70 FFAMTKLFQSN-DPTLRRMCYLTIKEMSCIAED--VII---VTSSLTKDMTG-KEDSYRGPAVRALCQITDST-MLQA--  139 (355)
T ss_dssp             HHHHHGGGGCC-CHHHHHHHHHHHHHHTTTSSC--GGG---GHHHHHHHHHS-SCHHHHHHHHHHHHHHCCTT-THHH--
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHHH--HHH---HHHHHHhhcCC-CcHhHHHHHHHHHhcCCCHH-HHHH--
Confidence            34455677664 666666655555566555211  121   24444554555 57888888899998876444 3233  


Q ss_pred             hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930          111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                         ..+.+...+.+.++-+++.|+-+...|.        +..++..+     +.++.+-+++.+.++.++.+|+.+|..+
T Consensus       140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~--------~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei  203 (355)
T 3tjz_B          140 ---IERYMKQAIVDKVPSVSSSALVSSLHLL--------KCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHV  203 (355)
T ss_dssp             ---HHHHHHHHHTCSSHHHHHHHHHHHHHHT--------TTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCCCHHHHHHHHHHHHHHh--------ccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence               3566788888999999999999988888        34455432     6899999999999999999999999999


Q ss_pred             ccCc
Q 025930          191 AQHE  194 (246)
Q Consensus       191 a~~~  194 (246)
                      ..++
T Consensus       204 ~~~d  207 (355)
T 3tjz_B          204 RKND  207 (355)
T ss_dssp             HTTC
T ss_pred             Hhhc
Confidence            8743

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.65  E-value=0.081  Score=40.81  Aligned_cols=162  Identities=14%  Similarity=0.210  Sum_probs=96.9

Q ss_pred             hcCCcchHHHHHh----cCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhc-CCCHHHH
Q 025930           57 LAMNETNQELIMT----QGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR-CGHPDVL  130 (246)
Q Consensus        57 la~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~  130 (246)
                      |+.++...+.++.    ...+..++..+.+ +-=.++++|...+.+++ ..++....+     +..|+-+++ ++...+-
T Consensus        14 latge~~~eii~~a~~d~~~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIplt   87 (253)
T 2db0_A           14 LANGEHLEKILIMAKYDESVLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLT   87 (253)
T ss_dssp             HHTTCSHHHHHHHHHHCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHH
T ss_pred             HhhhhhHHHHHHHHHhhHHHHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchH
Confidence            3445444444432    2335555555554 23458889999999998 567766555     344555554 6667777


Q ss_pred             HHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhH------------
Q 025930          131 AQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNA------------  197 (246)
Q Consensus       131 ~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~------------  197 (246)
                      +..+++++.++.            .+-.++ .+++|.+..-..-++++++-+...+|..++. +|+.-            
T Consensus        88 qeIa~a~G~la~------------i~Pe~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smlt  154 (253)
T 2db0_A           88 QEIAKAFGQMAK------------EKPELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLS  154 (253)
T ss_dssp             HHHHHHHHHHHH------------HCHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhHHHH------------hCHHHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhc
Confidence            788888888883            222222 2456666666666677776666666665543 33221            


Q ss_pred             -----HHH-----H----------hCCcHHHHHHHHhcCCHHHHHHHHHHHHcc----ChhHHHH
Q 025930          198 -----KDM-----I----------SGGALWELVRISRDCSREDIRTLAHRTLTS----SPAFQAE  238 (246)
Q Consensus       198 -----~~i-----~----------~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~----~~~~~~e  238 (246)
                           ...     +          -.-.+|.|..++. +.++-+|..|.++|..    +|+++.-
T Consensus       155 skd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~-D~deiVRaSaVEtL~~lA~~npklRki  218 (253)
T 2db0_A          155 SKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLH-DGDEIVRASAVEALVHLATLNDKLRKV  218 (253)
T ss_dssp             CSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGG-CSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHc-CcchhhhHHHHHHHHHHHHcCHHHHHH
Confidence                 111     1          1234566777776 6677889999999875    5555543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.24  E-value=0.15  Score=42.37  Aligned_cols=189  Identities=13%  Similarity=0.073  Sum_probs=110.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHH-HH---HhcCCChHHHHHHHHHHHHhhCCchhH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLS-TT---AANAEDPQTLRMVAGAIANLCGNDKLQ  106 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~-~l---l~~~~~~~~~~~a~~aL~~L~~~~~~~  106 (246)
                      +..+..+++.+.  ..+--+...++-+..++.....+.+.+.-..++ .+   +.+...+..+..++++++|+..++..+
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~  182 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ  182 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence            455555555542  222234555555566665555554333323333 22   222234556778999999999888888


Q ss_pred             HHHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHccc-CCChhHHHHH
Q 025930          107 LKLRGE--GGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSN-NEASPIRRHI  183 (246)
Q Consensus       107 ~~l~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~-~~~~~v~~~a  183 (246)
                      +.+...  .+++.+...+.+++..++..++.++.|++......   ...+.+..     ++..+..++. ..+++....+
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~---~~~~~~~~-----ll~~l~~il~~~~d~EalyR~  254 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD---HNIEGKAQ-----CLSLISTILEVVQDLEATFRL  254 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS---CCHHHHHH-----HHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc---CCchHHHH-----HHHHHHHHHhccCCHHHHHHH
Confidence            777642  24555555555678899999999999998641100   01111111     3334444443 3488999999


Q ss_pred             HHHHHHhccCchhHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          184 ELALCHLAQHEVNAKDMIS-GGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       184 ~~aL~~La~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      +.||++|...+...+.+.+ -|....+-++...+.+..+.+.+...+
T Consensus       255 LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~  301 (304)
T 3ebb_A          255 LVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL  301 (304)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            9999999875444455554 455555555555445555555555444

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.97  E-value=0.58  Score=39.24  Aligned_cols=198  Identities=13%  Similarity=0.049  Sum_probs=142.0

Q ss_pred             HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHh--cCcHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 025930           23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMT--QGGIGLLSTTAANAEDPQTLRMVAGAIANL   99 (246)
Q Consensus        23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L   99 (246)
                      +.+...+.+..|+..|..= +-+.++.++.+..++-.. ...+...++  ..--.++..++...+++++--.+-..|+.+
T Consensus        72 ~ei~~~dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            4566789999999999885 677788888888888655 222222211  123556666677666777776677778887


Q ss_pred             hCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC---ChHHHHHcccCCC
Q 025930          100 CGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG---ALPWIVQNSNNEA  176 (246)
Q Consensus       100 ~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g---~i~~Lv~ll~~~~  176 (246)
                      ...+...+.+...+.+-.+.+.+..++-++..-|..++..|-.        ............+   .+...-.|+.+++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt--------~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N  222 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT--------RHKLLSAEFLEQHYDRFFSEYEKLLHSEN  222 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH--------SSHHHHHHHHHHTHHHHHHHHHHHTTCSS
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHh--------ccHHHHHHHHHHhHHHHHHHHHHHhcCCc
Confidence            7899998888888888899999999999999999999997642        2234444444433   4667788999999


Q ss_pred             hhHHHHHHHHHHHhccCchhHHHHHh----CCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          177 SPIRRHIELALCHLAQHEVNAKDMIS----GGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       177 ~~v~~~a~~aL~~La~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      =-+|..++..|+.+-.++.+-..|..    ..-+..++.++++. .+.++--|.-..+
T Consensus       223 YVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFK  279 (341)
T 1upk_A          223 YVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFK  279 (341)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhhee
Confidence            99999999999999888888666653    24455567777744 4556666655443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.47  Score=38.42  Aligned_cols=179  Identities=9%  Similarity=0.014  Sum_probs=110.4

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCCc---chHHH-HHhcC-cHHHHHHHHhcCCChHHHHHHHHHHHHhhCC---ch-
Q 025930           34 LLMLLGSSEDETIHRVAAGAIANLAMNE---TNQEL-IMTQG-GIGLLSTTAANAEDPQTLRMVAGAIANLCGN---DK-  104 (246)
Q Consensus        34 Li~ll~~~~~~~~~~~a~~~L~~la~~~---~~~~~-i~~~g-~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~---~~-  104 (246)
                      |-+.|.+. +...|..|...|..+....   ..... +...+ ..+.+...+.+ .+..+...++.++..++..   .. 
T Consensus        14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D-sN~~v~~~al~~l~~~~~~~~~~~~   91 (278)
T 4ffb_C           14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD-SNVVAQEQAIVALNSLIDAFASSSL   91 (278)
T ss_dssp             HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCC---C
T ss_pred             HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhhhhhc
Confidence            56778885 8888999998888764331   11111 11223 34455566766 6888999999999888732   11 


Q ss_pred             hHH--HHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930          105 LQL--KLRGEGGIKALLGM-VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR  181 (246)
Q Consensus       105 ~~~--~l~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~  181 (246)
                      ...  ...-...++.|+.- +.+....++..+..++..++...      ...        ..+++.+...+.+.+|.++.
T Consensus        92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~------~~~--------~~~~e~l~~~l~~Knpkv~~  157 (278)
T 4ffb_C           92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD------TSI--------TQSVELVIPFFEKKLPKLIA  157 (278)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS------SSS--------HHHHHHHGGGGGCSCHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc------CcH--------HHHHHHHHHHHhccCHHHHH
Confidence            111  12223456777754 77888889999888888776421      001        12356677788888999999


Q ss_pred             HHHHHHHHhcc--Cch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          182 HIELALCHLAQ--HEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       182 ~a~~aL~~La~--~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      .++.+|..+-.  ...  ..+..+. ..++.+..++. +.+..+|..|..++.
T Consensus       158 ~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~-d~~~~VR~aA~~l~~  208 (278)
T 4ffb_C          158 AAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG-HGDRNVRSQTMNLIV  208 (278)
T ss_dssp             HHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT-CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence            99999988743  111  1111111 13334555555 667888999998875

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.54  E-value=0.33  Score=39.17  Aligned_cols=171  Identities=13%  Similarity=0.095  Sum_probs=112.4

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCC--C--HHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHH
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSE--D--ETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTA   80 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~--~--~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll   80 (246)
                      +.++++.-.|.+++.|..++++.+.--|-.+|+...  .  +.++-.+.++++.+.+.  ++.-..+.+.+.+|..+.++
T Consensus        75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim  154 (268)
T 2fv2_A           75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM  154 (268)
T ss_dssp             HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence            556777778999999999999998444444444421  1  44666689999999755  44555667889999999999


Q ss_pred             hcCCChHHHHHHHHHHHHhhCCchhHHHHHhc--------CCHHHHHH-HhcCCCHHHHHHHHHHHHHhhcccccccccC
Q 025930           81 ANAEDPQTLRMVAGAIANLCGNDKLQLKLRGE--------GGIKALLG-MVRCGHPDVLAQVARGIANFAKCESRASTQG  151 (246)
Q Consensus        81 ~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~--------g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  151 (246)
                      ..+ ++-.+.-|...+..+-.++..-..+...        .++..++. +...+++.+.+.+++....|+         +
T Consensus       155 e~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs---------d  224 (268)
T 2fv2_A          155 ESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS---------D  224 (268)
T ss_dssp             HHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT---------T
T ss_pred             hhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh---------c
Confidence            985 4666667888888777666554444321        12222233 224678999999999999999         5


Q ss_pred             ChhhhHHHHhCCChHH------HHHcccCCChhHHHHHHHHHHHh
Q 025930          152 TKTGRSLLIDDGALPW------IVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       152 ~~~~~~~l~~~g~i~~------Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                      ++..|+++.+.  +|.      +..++ .+|+.++.--...+.|+
T Consensus       225 n~rar~aL~~~--LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          225 NPRAREALRQC--LPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             SHHHHHHHHHH--SCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHh--CcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence            56777777742  221      11222 25666665555544444

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.46  E-value=0.5  Score=40.59  Aligned_cols=154  Identities=10%  Similarity=0.088  Sum_probs=99.0

Q ss_pred             HHHHhcCcHHHHHHHHhc----------CCChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHH
Q 025930           65 ELIMTQGGIGLLSTTAAN----------AEDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQV  133 (246)
Q Consensus        65 ~~i~~~g~i~~L~~ll~~----------~~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a  133 (246)
                      +.|. .+|+..|+.++..          ..+....-.++.+|+.+..+......++ ...++..+...+.++.+.++..+
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a  182 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA  182 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence            3444 6789988888742          1244667788899999998887777766 45689999999999999999999


Q ss_pred             HHHHHHhhcccc-----cccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCc---hh----HHHH
Q 025930          134 ARGIANFAKCES-----RASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHE---VN----AKDM  200 (246)
Q Consensus       134 ~~~L~nL~~~~~-----~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~---~~----~~~i  200 (246)
                      +..|.-+|..+.     ..+...-+..+. ..+..-+..++..+..+ +.+.+..+...+-.+..++   +.    |..+
T Consensus       183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~-~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef  261 (383)
T 3eg5_B          183 AKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL  261 (383)
T ss_dssp             HHHHHHHHTCCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcCCcHHHHHHHHHHHHH-hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            999999887531     000000012222 33445688899999874 5566665555555554422   22    4455


Q ss_pred             HhCCcHHHHHHHHhcCCHHHH
Q 025930          201 ISGGALWELVRISRDCSREDI  221 (246)
Q Consensus       201 ~~~g~i~~L~~ll~~~~~~~~  221 (246)
                      ...|..+.+-. ++..+++++
T Consensus       262 ~~~Gl~~il~~-lr~~~~~~L  281 (383)
T 3eg5_B          262 MRLGLHQVLQE-LREIENEDM  281 (383)
T ss_dssp             HHTTHHHHHHH-HTTSCCHHH
T ss_pred             HHCChHHHHHH-HhcCCChhH
Confidence            56777666655 554444433

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.42  E-value=0.011  Score=47.80  Aligned_cols=164  Identities=15%  Similarity=0.045  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHH-----HHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCC
Q 025930           42 EDETIHRVAAGA-----IANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGG  114 (246)
Q Consensus        42 ~~~~~~~~a~~~-----L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~  114 (246)
                      +++.++..++..     |..+..|  +..|....+.=..+.|..++.+ ++..++..++..+   .              
T Consensus        62 ~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D-~d~~VR~~aA~~l---~--------------  123 (244)
T 1lrv_A           62 PFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFD-EDREVRITVADRL---P--------------  123 (244)
T ss_dssp             SSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTC-SCHHHHHHHHHHS---C--------------
T ss_pred             CCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcC-CCHHHHHHHHHhC---C--------------
Confidence            366666665532     3334444  2333444332223344455555 5677776665532   1              


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccc--cCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH-----
Q 025930          115 IKALLGMVRCGHPDVLAQVARGIANFAKCESRAST--QGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL-----  187 (246)
Q Consensus       115 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~--~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL-----  187 (246)
                      .+.+..++.++++.++..++.-+   ... .....  ..+.+.|..+...-..+.+..+++++++.||..+...+     
T Consensus       124 ~~~L~~L~~D~d~~VR~~aA~~l---~~~-~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L  199 (244)
T 1lrv_A          124 LEQLEQMAADRDYLVRAYVVQRI---PPG-RLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDL  199 (244)
T ss_dssp             TGGGGGGTTCSSHHHHHHHHHHS---CGG-GGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhc---CHH-HHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHH
Confidence            12334444455555555555421   100 00000  12334444444333334445555666666666665432     


Q ss_pred             HHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          188 CHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       188 ~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      ..|..  +...|..+.+.-+.+.|..+ + +++..++..|...|
T Consensus       200 ~~Ll~D~d~~VR~~aa~~l~~~~L~~L-~-D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          200 LELLHDPDWTVRLAAVEHASLEALREL-D-EPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGCSSHHHHHHHHHHSCHHHHHHC-C-CCCHHHHHHHHCCC
T ss_pred             HHHHcCCCHHHHHHHHHcCCHHHHHHc-c-CCCHHHHHHHHHHh
Confidence            22222  22334444443334555554 4 56667777776544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.11  E-value=1  Score=43.37  Aligned_cols=155  Identities=14%  Similarity=0.052  Sum_probs=101.3

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCch
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDK  104 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~  104 (246)
                      ...+|.|+..|+++.....+..|..++..++.....+-...=-..||.+...+-+ .-+++...|..++..+|   .|.+
T Consensus       132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n~d  210 (986)
T 2iw3_A          132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETVDNKD  210 (986)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCCcc
Confidence            4568999999987656888888999999998653222111112367777777777 45889999999998888   3333


Q ss_pred             hH-------HHHHhcCCH-------------------------HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCC
Q 025930          105 LQ-------LKLRGEGGI-------------------------KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGT  152 (246)
Q Consensus       105 ~~-------~~l~~~g~i-------------------------~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  152 (246)
                      ..       +.+.+-.-+                         |.|.+-|...+..++++++-++-|||.--      .+
T Consensus       211 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv------~~  284 (986)
T 2iw3_A          211 IERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV------ED  284 (986)
T ss_dssp             TGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC------CC
T ss_pred             hhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc------CC
Confidence            21       112212222                         33333444556778889999999999742      33


Q ss_pred             hhhhHHHHhCCChHHHHHcccC-CChhHHHHHHHHHHHh
Q 025930          153 KTGRSLLIDDGALPWIVQNSNN-EASPIRRHIELALCHL  190 (246)
Q Consensus       153 ~~~~~~l~~~g~i~~Lv~ll~~-~~~~v~~~a~~aL~~L  190 (246)
                      +.-...++ -..+|-+-..... .+|++|+.+..|+..|
T Consensus       285 ~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          285 PQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            44444444 2456666555543 3899999999998888

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.04  E-value=0.59  Score=37.13  Aligned_cols=151  Identities=11%  Similarity=0.095  Sum_probs=93.5

Q ss_pred             hcCcHHHHHHHHhcC----------CChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025930           69 TQGGIGLLSTTAANA----------EDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVARGI  137 (246)
Q Consensus        69 ~~g~i~~L~~ll~~~----------~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L  137 (246)
                      ..+|+..|+..+...          .+....-.++.+|+.+.++......+. ..+++..+...+.++++.++..++..|
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL  120 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  120 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            467888888776531          134556678899999998887777766 456889999999999999999999999


Q ss_pred             HHhhccccc-----ccccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCc---hh----HHHHHhCC
Q 025930          138 ANFAKCESR-----ASTQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHE---VN----AKDMISGG  204 (246)
Q Consensus       138 ~nL~~~~~~-----~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~---~~----~~~i~~~g  204 (246)
                      .-+|..++.     .+...-+.. +...+..-+..++..++.+ +.+.+..+...+-.+..++   +.    |..+...|
T Consensus       121 ~~lc~~~~~~G~~~~VL~Al~~~-~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G  199 (233)
T 2f31_A          121 SALCILPQPEDMNERVLEAMTER-AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG  199 (233)
T ss_dssp             HHHHTCSSSSCHHHHHHHHHHHH-HHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCCChHHHHHHHHHHH-HHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence            988875310     000000111 1123344577888888744 4556555555555554433   22    44555666


Q ss_pred             cHHHHHHHHhcCCHHHH
Q 025930          205 ALWELVRISRDCSREDI  221 (246)
Q Consensus       205 ~i~~L~~ll~~~~~~~~  221 (246)
                      ..+.+-.+ +..+++++
T Consensus       200 l~~il~~l-~~~~~~~L  215 (233)
T 2f31_A          200 LHQVLQEL-REIENEDM  215 (233)
T ss_dssp             HHHHHHHH-HHCCCHHH
T ss_pred             hHHHHHHH-hccCCHHH
Confidence            66555444 44443433

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.32  Score=39.40  Aligned_cols=146  Identities=13%  Similarity=0.132  Sum_probs=88.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCC---c-chHHHH--HhcCcHHHHHHH-HhcCCChHHHHHHHHHHHHhhCCchh
Q 025930           33 SLLMLLGSSEDETIHRVAAGAIANLAMN---E-TNQELI--MTQGGIGLLSTT-AANAEDPQTLRMVAGAIANLCGNDKL  105 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~---~-~~~~~i--~~~g~i~~L~~l-l~~~~~~~~~~~a~~aL~~L~~~~~~  105 (246)
                      .+-..+... +..++..++.++..++..   . ..+...  .-...++.|+.- +.+ ..+.++..+..++..++.....
T Consensus        59 ~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~~  136 (278)
T 4ffb_C           59 LFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDTS  136 (278)
T ss_dssp             HHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcCc
Confidence            344455554 788888888888887643   1 112111  112345555543 444 4577887888888776522211


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhh-hHHHHhCCChHHHHHcccCCChhHHHHHH
Q 025930          106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTG-RSLLIDDGALPWIVQNSNNEASPIRRHIE  184 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~  184 (246)
                      ...     .++.+...+.+.++.++..++..|..+...-      +.... ..... ..+++.+..++.+.++.||..|.
T Consensus       137 ~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f------g~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~  204 (278)
T 4ffb_C          137 ITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAF------GLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTM  204 (278)
T ss_dssp             SHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH------TTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHh------CCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHH
Confidence            111     2455667788899999999998888765310      11100 01111 12456777888999999999999


Q ss_pred             HHHHHhcc
Q 025930          185 LALCHLAQ  192 (246)
Q Consensus       185 ~aL~~La~  192 (246)
                      .++..+-.
T Consensus       205 ~l~~~ly~  212 (278)
T 4ffb_C          205 NLIVEIYK  212 (278)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988854

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.61  E-value=0.46  Score=46.13  Aligned_cols=133  Identities=9%  Similarity=0.011  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCc--c-hHHHHHhcCcHHHHHHHHhcCC--ChH--HHHHHHHHHHHhh----CCchhHHHHH
Q 025930           42 EDETIHRVAAGAIANLAMNE--T-NQELIMTQGGIGLLSTTAANAE--DPQ--TLRMVAGAIANLC----GNDKLQLKLR  110 (246)
Q Consensus        42 ~~~~~~~~a~~~L~~la~~~--~-~~~~i~~~g~i~~L~~ll~~~~--~~~--~~~~a~~aL~~L~----~~~~~~~~l~  110 (246)
                      .+...++.++.+++.++...  + ....+.+  .++.|+.++....  |+.  ++..+++++...+    .+++.-.   
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~---  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR---  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH---
Confidence            46888888999999998773  2 2333433  6778888776321  233  3345567776655    2222211   


Q ss_pred             hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh------CCChHHHHH----cccCCChhHH
Q 025930          111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID------DGALPWIVQ----NSNNEASPIR  180 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~------~g~i~~Lv~----ll~~~~~~v~  180 (246)
                        .++..|+..+..+++.++..|+.++.++|           .+++..+..      ...++.+++    ....-+++.+
T Consensus       540 --~vl~~L~~~l~~~~~~v~~~A~~al~~l~-----------~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~  606 (1023)
T 4hat_C          540 --TVILKLFEFMHETHEGVQDMACDTFIKIV-----------QKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV  606 (1023)
T ss_dssp             --HHHHHHHHHTTCSCHHHHHHHHHHHHHHH-----------HHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH
T ss_pred             --HHHHHHHHHhhcCCHHHHHHHHHHHHHHH-----------HHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHH
Confidence              23444666666677899999999999999           366666653      123444443    3333466777


Q ss_pred             HHHHHHHHHhcc
Q 025930          181 RHIELALCHLAQ  192 (246)
Q Consensus       181 ~~a~~aL~~La~  192 (246)
                      .....++..+..
T Consensus       607 ~~lyeai~~vi~  618 (1023)
T 4hat_C          607 HTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            778888888855

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.15  E-value=1.3  Score=36.77  Aligned_cols=136  Identities=13%  Similarity=0.121  Sum_probs=82.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHh---cCCChHHHHHHHHHHHHhhC----Cchh
Q 025930           33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAA---NAEDPQTLRMVAGAIANLCG----NDKL  105 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~aL~~L~~----~~~~  105 (246)
                      .++..+.....+..+..++++++|+-.++..+..+...  ...++..+.   ...+..++..++..+.|++.    ..+.
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~  228 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI  228 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc
Confidence            34444544445667888999999999998888877752  233333332   22578899899999999981    1111


Q ss_pred             HHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-CChhHHH
Q 025930          106 QLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-EASPIRR  181 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~v~~  181 (246)
                       ....+  .+..+..++. ..+++....++.+|++|..        .+.+.++.....|+-..+-..... ..+++.+
T Consensus       229 -~~~~~--ll~~l~~il~~~~d~EalyR~LvALGtL~~--------~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~  295 (304)
T 3ebb_A          229 -EGKAQ--CLSLISTILEVVQDLEATFRLLVALGTLIS--------DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSE  295 (304)
T ss_dssp             -HHHHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHH
T ss_pred             -hHHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHh--------CChhHHHHHHHcCHHHHHHHHHhCCCchhHHH
Confidence             11111  3444445554 4588999999999999995        334545444444544444444443 2344433

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.95  E-value=2.1  Score=34.73  Aligned_cols=171  Identities=12%  Similarity=0.052  Sum_probs=104.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCc-HHHHHHHHhcCCChHHHHHHHHHHHHhhC-----CchhH
Q 025930           34 LLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMT-QGG-IGLLSTTAANAEDPQTLRMVAGAIANLCG-----NDKLQ  106 (246)
Q Consensus        34 Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~-i~~L~~ll~~~~~~~~~~~a~~aL~~L~~-----~~~~~  106 (246)
                      +...|-+. |...+..|+..|.....  .+.+.+.. .+. ++++.--+.+ .+..+...++.+|..+..     +....
T Consensus        51 ~~~~lfs~-d~k~~~~ale~L~~~l~--~~~~~~~~~lDll~kw~~lr~~d-~N~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           51 LMSQLFHK-DFKQHLAALDSLVRLAD--TSPRSLLSNSDLLLKWCTLRFFE-TNPAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHTCS-CHHHHHHHHHHHHHHHH--HCHHHHHHTHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHhcCC-CHHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHhccccch
Confidence            33344443 55545556666665422  22333322 111 2233222234 578888788888877641     11111


Q ss_pred             HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHH
Q 025930          107 LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAK-CESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIEL  185 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~  185 (246)
                      ..-. .-.+|.|+.-+.+..+.++..+-.++..++. ++        +        ..+++.++.-+++.+..+|..++.
T Consensus       127 ~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--------~--------~~v~~~l~~g~ksKN~R~R~e~l~  189 (266)
T 2of3_A          127 QEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--------P--------LKMTPMLLDALKSKNARQRSECLL  189 (266)
T ss_dssp             HHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--------H--------HHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--------H--------HHHHHHHHHHHccCCHHHHHHHHH
Confidence            1100 1257889999988888899888888877763 11        1        346778888888889999999999


Q ss_pred             HHHHhccCchhHHHHHhCCcH---HHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          186 ALCHLAQHEVNAKDMISGGAL---WELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       186 aL~~La~~~~~~~~i~~~g~i---~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      .+..+-......    ...++   +.+..++. +.+..+|.+|..++.
T Consensus       190 ~l~~li~~~G~~----~~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lv  232 (266)
T 2of3_A          190 VIEYYITNAGIS----PLKSLSVEKTVAPFVG-DKDVNVRNAAINVLV  232 (266)
T ss_dssp             HHHHHHHHHCSG----GGGGGCHHHHHGGGGG-CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC----ccccccchHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            998884321111    23477   88888887 566778999998886

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.07  E-value=2.7  Score=33.24  Aligned_cols=154  Identities=16%  Similarity=0.109  Sum_probs=95.8

Q ss_pred             HhCCHHHHHHHhcCC----------CCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHH
Q 025930           27 EAGGLTSLLMLLGSS----------EDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGA   95 (246)
Q Consensus        27 ~~g~i~~Li~ll~~~----------~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~a   95 (246)
                      ..||+..|++.|..-          .+...+..++.+|..+.........+.+. +++..+...+.+ +++.++..++..
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s-~~~~~r~~~leL  119 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKL  119 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCT-TSHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCC-CCchHHHHHHHH
Confidence            468888888887641          13445666899999998887777777764 456666666655 678888899999


Q ss_pred             HHHhhCCch--h-HHHHHh----------cCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh
Q 025930           96 IANLCGNDK--L-QLKLRG----------EGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID  161 (246)
Q Consensus        96 L~~L~~~~~--~-~~~l~~----------~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~  161 (246)
                      |..+|..++  + ...+.+          ..-...++..++ +.+.+.+..+...+-.+...+  ++...--+.|..+..
T Consensus       120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~--~dl~~R~~lR~ef~~  197 (233)
T 2f31_A          120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA--EELDFRVHIRSELMR  197 (233)
T ss_dssp             HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence            998884332  3 333321          224556777776 345666666666665565432  000001345666777


Q ss_pred             CCChHHHHHcccCCChhHHHHH
Q 025930          162 DGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       162 ~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                      .|..+.+-.+=..+++++..+.
T Consensus       198 ~Gl~~il~~l~~~~~~~L~~Qi  219 (233)
T 2f31_A          198 LGLHQVLQELREIENEDMKVQL  219 (233)
T ss_dssp             TTHHHHHHHHHHCCCHHHHHHH
T ss_pred             CChHHHHHHHhccCCHHHHHHH
Confidence            7766666555454566665544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=92.90  E-value=1.3  Score=35.95  Aligned_cols=130  Identities=8%  Similarity=-0.061  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHHHHhcCC---cchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHH
Q 025930           43 DETIHRVAAGAIANLAMN---ETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKAL  118 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~---~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L  118 (246)
                      +..+...+..+|..+..-   .+.+..-.+ .-.+|.|+.-+.+ ..+.+++.+-.++..++.. --     -..+.+.+
T Consensus       100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v-~~-----~~~v~~~l  172 (266)
T 2of3_A          100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDV-VG-----PLKMTPML  172 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHH-HC-----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHH-CC-----HHHHHHHH
Confidence            666666666666655211   111111011 1147788777776 3467787777777666421 00     11235567


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCCh---HHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGAL---PWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i---~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      +.-+++.+...+..++..+.++-..      .|..       ..+.+   |.+..++.+.|..||..|..++..+-.
T Consensus       173 ~~g~ksKN~R~R~e~l~~l~~li~~------~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          173 LDALKSKNARQRSECLLVIEYYITN------AGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHH------HCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHh------cCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            7778899999999999998887632      1222       23468   999999999999999999999987754

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=92.59  E-value=3.5  Score=35.04  Aligned_cols=129  Identities=12%  Similarity=0.101  Sum_probs=91.7

Q ss_pred             HHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHc
Q 025930           92 VAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQN  171 (246)
Q Consensus        92 a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~l  171 (246)
                      +...|.-|-++.....-++..+|+..+......++.++....+..|...+-         .......- =...+|++++.
T Consensus       263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD---------aksL~~t~-L~e~LPFi~~~  332 (619)
T 3c2g_A          263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD---------AKALAKTP-LENILPFLLRL  332 (619)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT---------CGGGGTSC-CTTHHHHHHHH
T ss_pred             HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc---------hHHHhhcc-ccccchHHHHH
Confidence            334444444666666789999999999999999999999999999998871         11111111 13458888887


Q ss_pred             cc-CCChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcC------CHHHHHHHHHHHHc
Q 025930          172 SN-NEASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDC------SREDIRTLAHRTLT  230 (246)
Q Consensus       172 l~-~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~------~~~~~~~~A~~~L~  230 (246)
                      +. ++++++-....+.|.|...+. ..++..+..|+++.|-..+...      .+..+++.|.+.+-
T Consensus       333 i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~Iic  399 (619)
T 3c2g_A          333 IEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIIC  399 (619)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHH
T ss_pred             hccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHH
Confidence            74 457889999999999996654 4566667899999998877532      34556666665543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.00  E-value=2  Score=37.86  Aligned_cols=126  Identities=13%  Similarity=0.111  Sum_probs=86.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHh
Q 025930           33 SLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRG  111 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~  111 (246)
                      .++..-+.  ++..++-|+..|...-.+ ++.++.     ++..++.++.+ +|..++.+|...|-.+|.+ ++..++  
T Consensus        33 ~Il~~~kg--~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~-~~i~ki--  101 (507)
T 3u0r_A           33 VILDGVKG--GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCED-EDVSIRRQAIKELPQFATG-ENLPRV--  101 (507)
T ss_dssp             HHHHGGGS--CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT-TCHHHH--
T ss_pred             HHHHhcCC--CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh-hhhhhH--
Confidence            34444333  567788899999988766 766655     36778899988 6899999999999999977 555554  


Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          112 EGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       112 ~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                         +++|+.+|..+++.-...+-.+|..+-..+        +        .+.+..+...+..+++.+|+.++..|.
T Consensus       102 ---aDvL~QlLqtdd~~E~~~V~~sL~sllk~D--------p--------k~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          102 ---ADILTQLLQTDDSAEFNLVNNALLSIFKMD--------A--------KGTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             ---HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------H--------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhccchHHHHHHHHHHHHHHhcC--------h--------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence               678999999888776666666666665321        1        133444444333456677777666664

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=91.81  E-value=4.6  Score=34.35  Aligned_cols=126  Identities=13%  Similarity=0.188  Sum_probs=87.8

Q ss_pred             HHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhc-CCCHHHHH
Q 025930           54 IANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVR-CGHPDVLA  131 (246)
Q Consensus        54 L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~~~~  131 (246)
                      |.+|-.+ .+.-+-+++.+|+..+.....- .+.++....+..|...+........- -...+|-++..+. +++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinY-pN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQY-PNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeec-CCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcceEE
Confidence            4455555 4556889999999999888886 67788878888888776433221111 1224666666665 78899999


Q ss_pred             HHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC-------ChhHHHHHHHHHHH
Q 025930          132 QVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE-------ASPIRRHIELALCH  189 (246)
Q Consensus       132 ~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-------~~~v~~~a~~aL~~  189 (246)
                      ...+.|.|...        .....++.-+..|+++.|.......       +..-++.+|+.++|
T Consensus       344 SGTGFLSNVVA--------HKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN  400 (619)
T 3c2g_A          344 SGTGFLSNVVA--------HKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN  400 (619)
T ss_dssp             HHHHHHHHHST--------TCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHh--------cccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence            99999999885        3467888888999999987765332       33445556665554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=91.81  E-value=2.1  Score=34.04  Aligned_cols=142  Identities=11%  Similarity=0.120  Sum_probs=94.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHH
Q 025930           33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLR  110 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~  110 (246)
                      ++...|-..+..+++..|+..|+.+ ..  ..      ..++.+...+...++=.+++.++.++..++.  +++-     
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~~--~~------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-----  139 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK--DK------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-----  139 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-TT--SH------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-cC--cH------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence            4444444444567788888888877 21  11      1344444434444667899999999988873  3331     


Q ss_pred             hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930          111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                         .++.+.....+++..++..|...++.-+..+   ....++        .-.+|.|-.+..+++.-||+...++|..+
T Consensus       140 ---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~---~~k~dp--------~~ll~iL~~L~~D~s~yVrKSVan~LrD~  205 (240)
T 3l9t_A          140 ---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP---YFKENP--------NEAIRRIADLKEDVSEYVRKSVGNALRDI  205 (240)
T ss_dssp             ---THHHHHHHHHCSSHHHHHHHHHHTCSGGGST---TTTTCH--------HHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc---hhhcCH--------HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence               5778888889999999999987766533210   000111        12577777788878889999999999999


Q ss_pred             cc-CchhHHHHHh
Q 025930          191 AQ-HEVNAKDMIS  202 (246)
Q Consensus       191 a~-~~~~~~~i~~  202 (246)
                      +. +|+-...+++
T Consensus       206 SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          206 SKKFPDLVKIELK  218 (240)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             hhhCHHHHHHHHH
Confidence            98 6666555554

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.89  E-value=3.8  Score=38.97  Aligned_cols=132  Identities=9%  Similarity=-0.038  Sum_probs=83.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc--CCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHH
Q 025930           42 EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN--AEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKAL  118 (246)
Q Consensus        42 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L  118 (246)
                      .+...++.++.+++.++..-...    +...++.++..+..  .+++.++..+++++..++.. ....+ .. ..+++.+
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l  534 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLV  534 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHH
Confidence            47777888999999998762110    01223444443321  14688999999999988732 11222 22 3578888


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC--CChHHHHHcccCC--ChhHHHHHHHHHHHhcc
Q 025930          119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD--GALPWIVQNSNNE--ASPIRRHIELALCHLAQ  192 (246)
Q Consensus       119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~--g~i~~Lv~ll~~~--~~~v~~~a~~aL~~La~  192 (246)
                      +..|.+  +.++..|+.++.+++.           +.+..+...  ..++.|..++..+  +.+.+.....+++.++.
T Consensus       535 ~~~l~~--~~V~~~A~~al~~l~~-----------~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          535 LHALGN--PELSVSSVSTLKKICR-----------ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHTTC--GGGHHHHHHHHHHHHH-----------HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhCC--chHHHHHHHHHHHHHH-----------HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            888854  7899999999999993           333333211  1233444455542  56888888999999875

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=90.54  E-value=1.4  Score=42.32  Aligned_cols=134  Identities=7%  Similarity=0.008  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc-----CCChHHHHHHHHHHHHhhCCchhHHHHHhc-----CC
Q 025930           45 TIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN-----AEDPQTLRMVAGAIANLCGNDKLQLKLRGE-----GG  114 (246)
Q Consensus        45 ~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~-----g~  114 (246)
                      ..+.+|...|..++..-+  +.+.. ..++.+...+.+     ..+-..++.|+.++..++........-...     ..
T Consensus       376 s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l  452 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             CcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence            356667777777775532  12211 123333344441     234567888999999887321100000000     11


Q ss_pred             HH----HHHHHhcCC---CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          115 IK----ALLGMVRCG---HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       115 i~----~L~~ll~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                      .+    .++..+.++   ++-++..++.++..++..           ...... ..+++.++..+.++++.|+..|+.+|
T Consensus       453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-----------~~~~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al  520 (960)
T 1wa5_C          453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-----------LTKAQL-IELMPILATFLQTDEYVVYTYAAITI  520 (960)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-----------SCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-----------CCHHHH-HHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            11    223334555   788999999999999842           111122 24678888888888899999999999


Q ss_pred             HHhccC
Q 025930          188 CHLAQH  193 (246)
Q Consensus       188 ~~La~~  193 (246)
                      .+++..
T Consensus       521 ~~~~~~  526 (960)
T 1wa5_C          521 EKILTI  526 (960)
T ss_dssp             HHHTTC
T ss_pred             HHHHhc
Confidence            999873

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.35  E-value=7.8  Score=33.08  Aligned_cols=150  Identities=11%  Similarity=0.097  Sum_probs=92.1

Q ss_pred             cCcHHHHHHHHhcC----------CChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 025930           70 QGGIGLLSTTAANA----------EDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVARGIA  138 (246)
Q Consensus        70 ~g~i~~L~~ll~~~----------~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~  138 (246)
                      .+|+..|+..+...          .+....-.++.+|+.+.++......+. ..+++..+...+.++++.++..++..|.
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~  125 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  125 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            57888887776421          134556678899999998887777766 4568899999998899999999999998


Q ss_pred             Hhhcccccc-----cccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCch---h----HHHHHhCCc
Q 025930          139 NFAKCESRA-----STQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHEV---N----AKDMISGGA  205 (246)
Q Consensus       139 nL~~~~~~~-----~~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~~---~----~~~i~~~g~  205 (246)
                      -+|..++..     +...-+. .....+..-+..++..+..+ +.+.+..+...+-.+..+++   .    |..+...|.
T Consensus       126 alc~~~~~~G~~~~VL~Al~~-~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL  204 (386)
T 2bnx_A          126 ALCILPQPEDMNERVLEAMTE-RAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  204 (386)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHH-HHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred             HHHcCCCCCChHHHHHHHHHH-HHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence            888753100     0000011 11223444577888888744 45555555555555544332   2    455556666


Q ss_pred             HHHHHHHHhcCCHHHH
Q 025930          206 LWELVRISRDCSREDI  221 (246)
Q Consensus       206 i~~L~~ll~~~~~~~~  221 (246)
                      .+.+- -++....+.+
T Consensus       205 ~~il~-~Lr~~~~~~L  219 (386)
T 2bnx_A          205 HQVLQ-ELREIENEDM  219 (386)
T ss_dssp             HHHHH-HHTTCCCHHH
T ss_pred             HHHHH-HHhccCChhH
Confidence            66554 4444443333

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=89.56  E-value=9.1  Score=32.65  Aligned_cols=155  Identities=16%  Similarity=0.114  Sum_probs=98.8

Q ss_pred             HHHHHhCCHHHHHHHhcC----------CCCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHH
Q 025930           23 EKIVEAGGLTSLLMLLGS----------SEDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRM   91 (246)
Q Consensus        23 ~~i~~~g~i~~Li~ll~~----------~~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~   91 (246)
                      +.++ .+|+..|+..|..          ..+...+..++.+|..+..+......+.+. +++..|...+.+ .++.++..
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s-~~~~~~~~  181 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMID  181 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCT-TSHHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCC-CchHHHHH
Confidence            4455 6788999988852          124456677899999998887777777654 557777777766 57889999


Q ss_pred             HHHHHHHhhCCc--hh-HHHHH----------hcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhhccc-ccccccCChhhh
Q 025930           92 VAGAIANLCGND--KL-QLKLR----------GEGGIKALLGMVRC-GHPDVLAQVARGIANFAKCE-SRASTQGTKTGR  156 (246)
Q Consensus        92 a~~aL~~L~~~~--~~-~~~l~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~~  156 (246)
                      ++..|..+|..+  ++ ...+.          +..-...++..+++ .+.+.+..+...+-.+.... +...   .-..|
T Consensus       182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~---R~~lR  258 (383)
T 3eg5_B          182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---RVHIR  258 (383)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH---HHHHH
T ss_pred             HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH---HHHHH
Confidence            999999999443  33 33332          22346677888876 56777776666666665432 1111   13446


Q ss_pred             HHHHhCCChHHHHHcccCCChhHHHH
Q 025930          157 SLLIDDGALPWIVQNSNNEASPIRRH  182 (246)
Q Consensus       157 ~~l~~~g~i~~Lv~ll~~~~~~v~~~  182 (246)
                      ..+...|..+.+-.+=..+++++...
T Consensus       259 ~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          259 SELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHCChHHHHHHHhcCCChhHHHH
Confidence            66667887666665444345554443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=89.21  E-value=6  Score=37.83  Aligned_cols=167  Identities=9%  Similarity=-0.004  Sum_probs=88.6

Q ss_pred             HHHhcCC--CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc--------h
Q 025930           35 LMLLGSS--EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND--------K  104 (246)
Q Consensus        35 i~ll~~~--~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~--------~  104 (246)
                      +..++++  ..+.++..|+++++..+..- ..+.+.  ..++.++..+.+ ++..++..|+.||.+++...        +
T Consensus       461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~--~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~  536 (960)
T 1wa5_C          461 APDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLI--ELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFI  536 (960)
T ss_dssp             HHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHH--HHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred             HHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHH--HHHHHHHHHhCC-CChhHHHHHHHHHHHHHhccccccccccc
Confidence            3344553  27888999999999998752 222222  246777777776 46889999999999998531        1


Q ss_pred             -hHHHHHh--cCCHHHHHHHhcCCC---HH--HHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc----
Q 025930          105 -LQLKLRG--EGGIKALLGMVRCGH---PD--VLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS----  172 (246)
Q Consensus       105 -~~~~l~~--~g~i~~L~~ll~~~~---~~--~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll----  172 (246)
                       .+..+..  ...++.|+.++....   +.  ....+..++..++..-.    ......-..     .++.|...+    
T Consensus       537 ~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~----~~~~p~~~~-----l~~~L~~~l~~~~  607 (960)
T 1wa5_C          537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE----DSIQPLFPQ-----LLAQFIEIVTIMA  607 (960)
T ss_dssp             SCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT----TTTGGGHHH-----HHHHHHHHHHHHT
T ss_pred             ccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH----HhhhhHHHH-----HHHHHHHHHHHHH
Confidence             1222221  124555566665531   11  12344444444432100    000011111     223333332    


Q ss_pred             c-CCChhHHHHHHHHHHHhccC--chhHHHHHhCCcHHHHHHHHhc
Q 025930          173 N-NEASPIRRHIELALCHLAQH--EVNAKDMISGGALWELVRISRD  215 (246)
Q Consensus       173 ~-~~~~~v~~~a~~aL~~La~~--~~~~~~i~~~g~i~~L~~ll~~  215 (246)
                      + ++++..+..++.+|..++..  ++....+ .....+.+..++..
T Consensus       608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~  652 (960)
T 1wa5_C          608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSE  652 (960)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHT
T ss_pred             hCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHh
Confidence            2 33667777788888888653  3332222 23455666666653

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=88.82  E-value=0.37  Score=38.66  Aligned_cols=128  Identities=16%  Similarity=0.114  Sum_probs=59.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHH-----HHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchh
Q 025930           33 SLLMLLGSSEDETIHRVAAGA-----IANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKL  105 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~-----L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~  105 (246)
                      .|..+++++ ++.++..++..     |..+..|  ...|......=..+.+..++++ ++..++..++..+   .     
T Consensus        78 ~l~~L~~D~-~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D-~d~~VR~~aA~~l---~-----  147 (244)
T 1lrv_A           78 ALTPLIRDS-DEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAAD-RDYLVRAYVVQRI---P-----  147 (244)
T ss_dssp             GGGGGTTCS-SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTC-SSHHHHHHHHHHS---C-----
T ss_pred             HHHHHccCc-CHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcC-CCHHHHHHHHHhc---C-----
Confidence            344444443 66666665543     2333333  2334443332122344444554 5778887766531   1     


Q ss_pred             HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHH-----HhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930          106 QLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA-----NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR  180 (246)
Q Consensus       106 ~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-----nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~  180 (246)
                               .+.+..+++++++.++..++..+.     .+..       ..+.+.|......-..+.|..++.+++..||
T Consensus       148 ---------~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~-------D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR  211 (244)
T 1lrv_A          148 ---------PGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQ-------DPEPEVRRIVASRLRGDDLLELLHDPDWTVR  211 (244)
T ss_dssp             ---------GGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTT-------CSSHHHHHHHHHHCCGGGGGGGGGCSSHHHH
T ss_pred             ---------HHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHc-------CCCHHHHHHHHHhCCHHHHHHHHcCCCHHHH
Confidence                     122334444555555555554311     0000       1223444444444445556666666666666


Q ss_pred             HHHHHH
Q 025930          181 RHIELA  186 (246)
Q Consensus       181 ~~a~~a  186 (246)
                      ..+...
T Consensus       212 ~~aa~~  217 (244)
T 1lrv_A          212 LAAVEH  217 (244)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            666544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=88.12  E-value=1.3  Score=40.12  Aligned_cols=181  Identities=12%  Similarity=0.038  Sum_probs=106.9

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      .++..|+..+..+ ...++..+.-.|.-+ .+ -... +  .+.++.++.-+++ .|.+++..|+.+|..++ .++-...
T Consensus       263 ~IL~qLV~~l~~~-~WEVRHGGLLGLKYL-~D-LL~~-L--d~Vv~aVL~GL~D-~DDDVRAVAAetLiPIA-~p~~l~~  334 (800)
T 3oc3_A          263 DIIEQLVGFLDSG-DWQVQFSGLIALGYL-KE-FVED-K--DGLCRKLVSLLSS-PDEDIKLLSAELLCHFP-ITDSLDL  334 (800)
T ss_dssp             CHHHHHTTGGGCS-CHHHHHHHHHHHHHT-GG-GCCC-H--HHHHHHHHHHTTC-SSHHHHHHHHHHHTTSC-CSSTHHH
T ss_pred             HHHHHHHhhcCCC-CeeehhhhHHHHHHH-HH-HHHH-H--HHHHHHHHhhcCC-cccHHHHHHHHHhhhhc-chhhHHH
Confidence            3455555555554 677776666666666 11 0000 1  2345566666676 57889989999998888 2221111


Q ss_pred             HHhcCCHHHHHHHhcCC-C-HHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCG-H-PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~-~-~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                           .+..+-+.|.+. | +.-...+...|..|+.++.           ..-.....+|.|-..+.+.-+.||..++.+
T Consensus       335 -----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-----------~a~~dp~LVPRL~PFLRHtITSVR~AVL~T  398 (800)
T 3oc3_A          335 -----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-----------ELSIPPERLKDIFPCFTSPVPEVRTSILNM  398 (800)
T ss_dssp             -----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-----------TCCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred             -----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-----------ccccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence                 233444444432 1 2223456677777776431           000112678999999999999999999999


Q ss_pred             HHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc-----cChhHHHHHHHhh
Q 025930          187 LCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT-----SSPAFQAEMRRLR  243 (246)
Q Consensus       187 L~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~-----~~~~~~~e~~~~~  243 (246)
                      |..+.          ....++.+.+-+--+++++++.++.++-.     ..|++..-|+-.|
T Consensus       399 L~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk~r~~Ll~~wi~L~MtPIG  450 (800)
T 3oc3_A          399 VKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIG  450 (800)
T ss_dssp             TTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHTCSCCCHHHHHHHHHHTT
T ss_pred             HHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence            98887          11234444444444777888888887764     3455555555444

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=86.62  E-value=13  Score=31.08  Aligned_cols=144  Identities=6%  Similarity=-0.042  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcC---CHHHH
Q 025930           43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEG---GIKAL  118 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g---~i~~L  118 (246)
                      ++++--.+-.+|..+..++...+.+.+.+.+-.+++.+.. ++-++-..|...+..+- .+..........+   .....
T Consensus       136 ~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y  214 (341)
T 1upk_A          136 SPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY  214 (341)
T ss_dssp             STTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred             cchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHH
Confidence            3444556788899999999888988888888888887776 57888888888888876 4444444444332   35566


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh----CCChHHHHHcccCCChhHHHHHHHHHHHhccCc
Q 025930          119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID----DGALPWIVQNSNNEASPIRRHIELALCHLAQHE  194 (246)
Q Consensus       119 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~----~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~  194 (246)
                      -.++.+++--.+.+++..|+.+-..         +.+...|..    ..-+..++.+|++.+..+|..|-.+.--...+|
T Consensus       215 ~~Ll~S~NYVTkRQSlKLLgelLld---------r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          215 EKLLHSENYVTKRQSLKLLGELLLD---------RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHS---------GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHhcCCcchhHHHHHHHHHHHHhC---------chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            7788899999999999999998742         345444443    234788999999999999999998887665554


Q ss_pred             hh
Q 025930          195 VN  196 (246)
Q Consensus       195 ~~  196 (246)
                      ..
T Consensus       286 ~K  287 (341)
T 1upk_A          286 NK  287 (341)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=86.61  E-value=2.4  Score=41.34  Aligned_cols=150  Identities=8%  Similarity=-0.047  Sum_probs=90.3

Q ss_pred             hhhhHHhHhhccccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc---
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN---   82 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~---   82 (246)
                      +..-+++.+.|.+...+..=.-.-+...|.+.++.+ +......++.+|+|+....          .++.|..++..   
T Consensus       417 La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g~p~----------~l~~l~~~l~~~~~  485 (1056)
T 1lsh_A          417 LGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA-KEEEIVLALKALGNAGQPN----------SIKKIQRFLPGQGK  485 (1056)
T ss_dssp             HHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCGG----------GHHHHHTTSTTSSS
T ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccCChh----------HHHHHHHhhcCccc
Confidence            344456666655433221100011233345555665 5555666899999998753          45666555532   


Q ss_pred             ---CCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHHHHHHh--cCCCHHHHHHHHHHHHHhhcccccccccCChhhh
Q 025930           83 ---AEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLGMV--RCGHPDVLAQVARGIANFAKCESRASTQGTKTGR  156 (246)
Q Consensus        83 ---~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~  156 (246)
                         .....++..|++||+.+... ++.        +-+.++.+.  ...+++++..|+..|..-.           |.  
T Consensus       486 ~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-----------P~--  544 (1056)
T 1lsh_A          486 SLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESK-----------PS--  544 (1056)
T ss_dssp             CCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC-----------CC--
T ss_pred             cccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC-----------cC--
Confidence               12346777899999988732 221        224466666  4567888888887776533           11  


Q ss_pred             HHHHhCCChHHHHHcccC-CChhHHHHHHHHHHHhcc
Q 025930          157 SLLIDDGALPWIVQNSNN-EASPIRRHIELALCHLAQ  192 (246)
Q Consensus       157 ~~l~~~g~i~~Lv~ll~~-~~~~v~~~a~~aL~~La~  192 (246)
                           ...+..++..+.. .+.+|.......|.+++.
T Consensus       545 -----~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~  576 (1056)
T 1lsh_A          545 -----VALVSMVAVRLRREPNLQVASFVYSQMRSLSR  576 (1056)
T ss_dssp             -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence                 2346667776655 478888888889988876

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=86.37  E-value=9.2  Score=36.95  Aligned_cols=136  Identities=9%  Similarity=-0.037  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCcc-h-HHH-HHhcCcHHHHHHHHhcC----CChHHHHHHHHHHHHhhCC-chhHHHHHhcC
Q 025930           42 EDETIHRVAAGAIANLAMNET-N-QEL-IMTQGGIGLLSTTAANA----EDPQTLRMVAGAIANLCGN-DKLQLKLRGEG  113 (246)
Q Consensus        42 ~~~~~~~~a~~~L~~la~~~~-~-~~~-i~~~g~i~~L~~ll~~~----~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g  113 (246)
                      .+...++.|+.+++.++..-. . ... +..  .++.+..+....    +++.++..+++++...+.. ....+.+  ..
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~--v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~  540 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RT  540 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHH--HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HH
Confidence            366778889999999986521 1 111 211  333444433211    1233343577887766621 1111111  12


Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--C----CChHHH----HHcccCCChhHHHHH
Q 025930          114 GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--D----GALPWI----VQNSNNEASPIRRHI  183 (246)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~----g~i~~L----v~ll~~~~~~v~~~a  183 (246)
                      +++.++..+.++++.++..|+.++.+++.           +.+..+..  .    ..++.+    ..++..-+.+.....
T Consensus       541 vl~~ll~~l~~~~~~V~~~A~~al~~l~~-----------~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~  609 (1049)
T 3m1i_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQ-----------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTF  609 (1049)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHH-----------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----------HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46677778888889999999999999994           44444431  1    223333    334444455555666


Q ss_pred             HHHHHHhcc
Q 025930          184 ELALCHLAQ  192 (246)
Q Consensus       184 ~~aL~~La~  192 (246)
                      ..++..+..
T Consensus       610 ~eai~~ii~  618 (1049)
T 3m1i_C          610 YKACGIIIS  618 (1049)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            677777744

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=85.79  E-value=7.3  Score=37.66  Aligned_cols=174  Identities=9%  Similarity=0.073  Sum_probs=99.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC------CchhH
Q 025930           33 SLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG------NDKLQ  106 (246)
Q Consensus        33 ~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~------~~~~~  106 (246)
                      .++..+.++ +...++.|-..|..+...+         ++...+..++.+..+..++..|+..|.+...      +++.+
T Consensus        20 ~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~   89 (1049)
T 3m1i_C           20 QVVSTFYQG-SGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR   89 (1049)
T ss_dssp             HHHHHHHHC-CHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred             HHHHHHhCC-ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH
Confidence            344444444 4445666777777665444         4566666777655688899999999998761      23333


Q ss_pred             HHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHH
Q 025930          107 LKLRGEGGIKALLGMVRCG-----HPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRR  181 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~  181 (246)
                      ..+ +...+..+...-..+     ++.++.+.+.++..++..+      . ++     ...+.++.|++++. .++..++
T Consensus        90 ~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~------~-p~-----~Wp~ll~~L~~~~~-~~~~~~~  155 (1049)
T 3m1i_C           90 IGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE------W-PQ-----NWPEFIPELIGSSS-SSVNVCE  155 (1049)
T ss_dssp             HHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHH------T-TT-----TCTTHHHHHHHHHT-TCHHHHH
T ss_pred             HHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHh------C-cc-----cchHHHHHHHHHHc-cChHHHH
Confidence            333 222333333322111     3567888888888887531      1 11     13457889999886 5666777


Q ss_pred             HHHHHHHHhccC-----ch----hH-----HHHHhC--CcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          182 HIELALCHLAQH-----EV----NA-----KDMISG--GALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       182 ~a~~aL~~La~~-----~~----~~-----~~i~~~--g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      .++.+|..++..     .+    .|     ..+.+.  .....+..++.......++..+.+++.
T Consensus       156 ~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~  220 (1049)
T 3m1i_C          156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLL  220 (1049)
T ss_dssp             HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            788888877631     11    11     223221  122333445544555667777777774

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=85.17  E-value=5  Score=38.32  Aligned_cols=130  Identities=13%  Similarity=0.076  Sum_probs=78.4

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHH---h-cCCChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHHH
Q 025930           43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTA---A-NAEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKA  117 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll---~-~~~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~~  117 (246)
                      +...++.|+.+++.++..-....    ...++.++.++   . +..++.++..+++++..++.. ..+.+.+-  .+++.
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~  550 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL  550 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence            55567889999999987732111    12334444333   2 123788999999999998821 11111111  23555


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh--CCChHHHHHcccCC--ChhHHHHHHHHHHHhcc
Q 025930          118 LLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID--DGALPWIVQNSNNE--ASPIRRHIELALCHLAQ  192 (246)
Q Consensus       118 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~--~g~i~~Lv~ll~~~--~~~v~~~a~~aL~~La~  192 (246)
                      ++..+ +  +.++..|+.++.+++.           +.+..+..  ...+..+..++..+  +.+.+..+..++..++.
T Consensus       551 l~~~l-~--~~v~~~A~~al~~l~~-----------~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          551 LVRGL-N--SSMSAQATLGLKELCR-----------DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             HHHHH-H--SSCHHHHHHHHHHHHH-----------HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-C--hHHHHHHHHHHHHHHH-----------HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence            66666 2  6789999999999993           44444442  13344555666653  56788888888888865

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=84.81  E-value=17  Score=30.88  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=95.3

Q ss_pred             hCCHHHHHHHhcCC----------CCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHHH
Q 025930           28 AGGLTSLLMLLGSS----------EDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGAI   96 (246)
Q Consensus        28 ~g~i~~Li~ll~~~----------~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~aL   96 (246)
                      .||+..|+..|..-          .+...+..++.+|..+.........+.+. +++..+...+.+ .++.++..++..|
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s-~~~~~r~~vleLL  124 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKLL  124 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT-TSHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCC-CCchHHHHHHHHH
Confidence            67888888877531          13455666899999998887777777664 556666666665 5788888899999


Q ss_pred             HHhhCCch--h-HHHHH----------hcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhccc-ccccccCChhhhHHHHh
Q 025930           97 ANLCGNDK--L-QLKLR----------GEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCE-SRASTQGTKTGRSLLID  161 (246)
Q Consensus        97 ~~L~~~~~--~-~~~l~----------~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~~~~l~~  161 (246)
                      ..+|..+.  + ...+.          +..-...++..+. +.+.+.+..++..+-.+..++ +...   .-..|..+..
T Consensus       125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~---R~~LR~Ef~~  201 (386)
T 2bnx_A          125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---RVHIRSELMR  201 (386)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH---HHHHHHHHHH
T ss_pred             HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHH
Confidence            88884332  3 33332          2224556777776 456666666666666666432 1111   1355777777


Q ss_pred             CCChHHHHHcccCCChhHHHHH
Q 025930          162 DGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       162 ~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                      .|..+.+-.+=...++.+....
T Consensus       202 ~GL~~il~~Lr~~~~~~L~~Qi  223 (386)
T 2bnx_A          202 LGLHQVLQELREIENEDMKVQL  223 (386)
T ss_dssp             TTHHHHHHHHTTCCCHHHHHHH
T ss_pred             CChHHHHHHHhccCChhHHHHH
Confidence            8876666555544566555443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=84.36  E-value=5.1  Score=35.30  Aligned_cols=63  Identities=19%  Similarity=0.276  Sum_probs=42.7

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC  100 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~  100 (246)
                      .+..+++++... |..+|..|.+.|..++.+ ++-..     .+.+|.++|.. +++.-....-.+|..+-
T Consensus        66 Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~QlLqt-dd~~E~~~V~~sL~sll  128 (507)
T 3u0r_A           66 AINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADILTQLLQT-DDSAEFNLVNNALLSIF  128 (507)
T ss_dssp             HHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHHTTC-CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence            466788888774 788888888888888888 33222     35688899987 45444445555555444

>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}

Probab=82.50  E-value=1.9  Score=34.64  Aligned_cols=98  Identities=15%  Similarity=0.160  Sum_probs=61.2

Q ss_pred             CChHHHHHHHHHHHHhhCCch-hHHHHHhcCCHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcccccccccCChh
Q 025930           84 EDPQTLRMVAGAIANLCGNDK-LQLKLRGEGGIKALLGMVR--------CGHPDVLAQVARGIANFAKCESRASTQGTKT  154 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~-~~~~l~~~g~i~~L~~ll~--------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~  154 (246)
                      .++..+..++++++|+..++. .++.+........++..+.        +++..++..++..+.|++..-.     ....
T Consensus       102 ~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~-----~~~~  176 (253)
T 3gae_A          102 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT-----KGNS  176 (253)
T ss_dssp             SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH-----TSCS
T ss_pred             CchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHh-----hccc
Confidence            457778899999999998887 5555544323344444331        1245678888899999986310     0000


Q ss_pred             hhHHHHhCCChHHHHHccc---------CCChhHHHHHHHHHHHhcc
Q 025930          155 GRSLLIDDGALPWIVQNSN---------NEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       155 ~~~~l~~~g~i~~Lv~ll~---------~~~~~v~~~a~~aL~~La~  192 (246)
                            +......++..+.         ..+++....++.||++|..
T Consensus       177 ------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~  217 (253)
T 3gae_A          177 ------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT  217 (253)
T ss_dssp             ------CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence                  1122333444333         1378899999999999986

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=81.96  E-value=14  Score=35.02  Aligned_cols=128  Identities=11%  Similarity=-0.021  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC------CchhHHHHHhcCCH
Q 025930           42 EDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG------NDKLQLKLRGEGGI  115 (246)
Q Consensus        42 ~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~------~~~~~~~l~~~g~i  115 (246)
                      .|+..++.|-..|.++-..+         ++...+..++.+..+..++-.|+..|.|...      +++.+..+ +...+
T Consensus        37 ~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i-r~~ll  106 (963)
T 2x19_B           37 PNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL-KAQLF  106 (963)
T ss_dssp             CCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH-HHHHH
Confidence            47777777777777775554         4566677777665678899999999998861      22333333 32234


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-----CChhHHHHHHHHHHHh
Q 025930          116 KALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-----EASPIRRHIELALCHL  190 (246)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-----~~~~v~~~a~~aL~~L  190 (246)
                      ..+... ..+.+.++.+.+.++..++..+      + ++     ...+.++.|+.++..     +++..+..++..|..+
T Consensus       107 ~~l~~~-~~~~~~ir~kl~~~la~i~~~~------~-p~-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l  173 (963)
T 2x19_B          107 TQITRF-ASGSKIVLTRLCVALASLALSM------M-PD-----AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL  173 (963)
T ss_dssp             HHHHHT-TTSCHHHHHHHHHHHHHHHHHH------T-TT-----TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHHHHh------C-cc-----ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence            444432 1235778889999999888631      1 11     134678888888865     2566778888888877


Q ss_pred             cc
Q 025930          191 AQ  192 (246)
Q Consensus       191 a~  192 (246)
                      +.
T Consensus       174 ~e  175 (963)
T 2x19_B          174 PE  175 (963)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=81.45  E-value=25  Score=34.18  Aligned_cols=117  Identities=10%  Similarity=0.051  Sum_probs=65.5

Q ss_pred             ChHHHHHHHHHHHHhh----CC-chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930           85 DPQTLRMVAGAIANLC----GN-DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL  159 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~----~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l  159 (246)
                      ++.++..+.-++..|.    .+ +.+...+++ -....+...+...+.+-+..++.+|+|+..          +      
T Consensus       408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p------  470 (1056)
T 1lsh_A          408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------P------  470 (1056)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------G------
T ss_pred             CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC----------h------
Confidence            4666666666666554    22 221111110 012223444456777888899999999883          1      


Q ss_pred             HhCCChHHHHHcccC-------CChhHHHHHHHHHHHhccC-chhHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 025930          160 IDDGALPWIVQNSNN-------EASPIRRHIELALCHLAQH-EVNAKDMISGGALWELVRISRD-CSREDIRTLAHRTL  229 (246)
Q Consensus       160 ~~~g~i~~Lv~ll~~-------~~~~v~~~a~~aL~~La~~-~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L  229 (246)
                         ..++.|..++..       ....++..|+.+|..++.. ++.        .-+.+..+..+ ..+.++|-+|...|
T Consensus       471 ---~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~L  538 (1056)
T 1lsh_A          471 ---NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVF  538 (1056)
T ss_dssp             ---GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             ---hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHH
Confidence               356777776632       1346888899999999763 222        22334455532 34555555555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.001
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-04
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-05

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (160), Expect = 3e-13
 Identities = 46/207 (22%), Positives = 75/207 (36%), Gaps = 11/207 (5%)

Query: 23  EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIM-TQGGIGLLSTTAA 81
           +  +    +  L  LL + ED+ +   AA  +  L+  E ++  IM +   +  +  T  
Sbjct: 11  DAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69

Query: 82  NAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA 141
           N  D +T R  AG + NL  + +  L +   GGI AL+ M+      VL      + N  
Sbjct: 70  NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129

Query: 142 KCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKD-M 200
             +  A               G L  +V   N             L  LA     +K  +
Sbjct: 130 LHQEGAKMAV--------RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 201 ISGGALWELVRISRDCSREDIRTLAHR 227
           ++ G    LV I R  + E +     R
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSR 208

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 3e-10
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 1/127 (0%)

Query: 15  DIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIG 74
            +  +++Q+         +    +     E I     GA+  LA +  N+ +I     I 
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463

Query: 75  LLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVA 134
           L      +       R+ AG +  L  + +    +  EG    L  ++   +  V    A
Sbjct: 464 LFVQLLYS-PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522

Query: 135 RGIANFA 141
             +   +
Sbjct: 523 AVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 27/209 (12%), Positives = 68/209 (32%), Gaps = 2/209 (0%)

Query: 20  SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTT 79
           S    +     +++++  + ++ D    R  AG + NL+ +      I   GGI  L   
Sbjct: 50  SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKM 109

Query: 80  AANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIA 138
             +      L      + NL    +  ++ +R  GG++ ++ ++   +   LA     + 
Sbjct: 110 LGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168

Query: 139 NFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAK 198
             A     +      +G    + +    +  +      S + + + +   +         
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 199 DMISGGALWELVRISRDCSREDIRTLAHR 227
               G  L +  +         +R L+  
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDA 257

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 6e-08
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 14/184 (7%)

Query: 59  MNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKAL 118
             E  Q  +    G+ ++            ++   G I NL         LR +G I  L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402

Query: 119 LGMVRCGHPDVLAQVARGIANFAKCESRASTQGTK-------------TGRSLLIDDGAL 165
           + ++   H D   + + G       E     +  +               R ++     +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462

Query: 166 PWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLA 225
           P  VQ   +    I+R     LC LAQ +  A+ + + GA   L  +    + E + T A
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYA 521

Query: 226 HRTL 229
              L
Sbjct: 522 AAVL 525

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 3e-08
 Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 23/241 (9%)

Query: 21  NQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTT 79
            ++++ + GG+  L+ LL  S ++ + + AAGA+ NL   + TN+     Q GI    + 
Sbjct: 36  AKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94

Query: 80  AANAEDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGH------------- 126
                + +  + + G + NL   D+L+ +L  +        ++                 
Sbjct: 95  LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 154

Query: 127 --PDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIE 184
             P+V       + N +  ++     G +T R+      +L   VQN    +    + +E
Sbjct: 155 VDPEVFFNATGCLRNLSSADA-----GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVE 209

Query: 185 LALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEMRRLRI 244
             +C L  +     D        +L   +R+   E   T      +           L  
Sbjct: 210 NCMCVL-HNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268

Query: 245 D 245
           +
Sbjct: 269 E 269

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 4e-08
 Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 10/160 (6%)

Query: 82  NAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANF 140
           +++D +   + A  I + C  ++  + ++   GGI  L+ ++R  + +V    A  + N 
Sbjct: 12  SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL 71

Query: 141 AKCESRASTQGTKTGRSLLIDDGALPWIVQ-NSNNEASPIRRHIELALCHLAQHEVNAKD 199
                      + T +        +   V        + I++ +   L +L+  +   ++
Sbjct: 72  V--------FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 200 MISGGALWELVRISRDCSREDIRTLAHRTLTSSPAFQAEM 239
           +I+        R+    S               P      
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 4e-08
 Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 11/180 (6%)

Query: 31  LTSLLMLLGSSEDETIHRVAAGAIANLA-MNETNQELIMTQGGIGLLSTTAANAEDPQTL 89
           +   +  L SS+DE    + A  I +    +E+ ++ +   GGI  L      + +    
Sbjct: 4   IPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKL-VDLLRSPNQNVQ 61

Query: 90  RMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRAS 148
           +  AGA+ NL   +   +L+ R + GI+  + ++R      + +   G+           
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 149 TQGTKTGRSLLIDDGALPW-------IVQNSNNEASPIRRHIELALCHLAQHEVNAKDMI 201
            +       +L D   +P+          +       +  +    L +L+  +   + M 
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 7   NTISVKSEDIRAQSNQEKIVEAGG--LTSLLMLL--GSSEDETIHRVAAGAIANLAM-NE 61
           +  S+ S   R       +       +T LL      +S  E I   A   + NL     
Sbjct: 350 SGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409

Query: 62  TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ 106
              +   +   +  +     ++  P+        ++++  + +LQ
Sbjct: 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 6/49 (12%), Positives = 20/49 (40%)

Query: 19  QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELI 67
               ++   +  L +++ L  SS        A   ++++  ++  Q ++
Sbjct: 409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 9/228 (3%)

Query: 2   TIQILNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNE 61
           T      +S + +        + I+ AG +   +  LG ++   I   +A A+ N+A   
Sbjct: 34  TQAARKLLSREKQPPI-----DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 88

Query: 62  TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIKALLG 120
           + Q   +  GG      +   +           A+ N+ G+    +  +   G I  LL 
Sbjct: 89  SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 148

Query: 121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR 180
           ++       LA        +       +             +  LP +V+  ++    + 
Sbjct: 149 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD---AVEQILPTLVRLLHHNDPEVL 205

Query: 181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRT 228
                A+ +L        +M+    +   +      +   I T A R 
Sbjct: 206 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 6/130 (4%)

Query: 20  SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQ--ELIMTQGGIGLLS 77
           SNQ  +     +  ++  + +S +      A  A   L   E     + I+  G I    
Sbjct: 6   SNQGTV--NWSVEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 62

Query: 78  TTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARG 136
           +     +        A A+ N+  G  +    +   G I A + ++   H  +  Q    
Sbjct: 63  SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 122

Query: 137 IANFAKCESR 146
           + N A   S 
Sbjct: 123 LGNIAGDGSA 132

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 34  LLMLLGSSEDETIHRVAAGAIANLAMNETNQEL--IMTQGGIGLLSTTAANAEDPQTLRM 91
            L+ + S  D    + AA AI N     T +++  ++  G I  L     +A+D + +++
Sbjct: 318 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL-MNLLSAKDTKIIQV 376

Query: 92  VAGAIANL-------CGNDKLQLKLRGEGGIKAL 118
           +  AI+N+          +KL + +   GG+  +
Sbjct: 377 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 410

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 13/203 (6%)

Query: 6   LNTISVKSEDIRAQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNET-NQ 64
           L  ++   E++    N     +  G+  L+     +    +   AA  I   + N    Q
Sbjct: 38  LELLADLCENM---DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 94

Query: 65  ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVR 123
           E ++  G +  L                  AI+ L    +   L+     G   L+  ++
Sbjct: 95  EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 154

Query: 124 CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI 183
                +  + A  + N                +  L   G +  +V     E SP   H+
Sbjct: 155 QQVQKLKVKSAFLLQNLLVGHPEH--------KGTLCSMGMVQQLVALVRTEHSPFHEHV 206

Query: 184 ELALCHLAQHEVNAKDMISGGAL 206
             ALC L               L
Sbjct: 207 LGALCSLVTDFPQGVRECREPEL 229

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.9
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.86
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.86
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.86
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.84
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.49
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.38
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.35
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.23
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.19
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.18
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.12
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.0
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.94
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.9
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.42
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.38
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.19
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.18
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.14
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.94
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.58
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.38
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.17
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.16
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.77
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.61
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.83
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.38
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.15
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	93.73
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.56
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.53
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	92.03
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.41

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.1e-23  Score=167.50  Aligned_cols=187  Identities=17%  Similarity=0.175  Sum_probs=167.6

Q ss_pred             hhhHHhHhhccccccHHHHHHhCCHHHHHH-HhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCC
Q 025930            7 NTISVKSEDIRAQSNQEKIVEAGGLTSLLM-LLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAE   84 (246)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~i~~~g~i~~Li~-ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~   84 (246)
                      +++..+.+++...+++..+...||+++|+. ++++ +++.++..|+.+|++++.+ +..+..+.+.|++|.|+.++.+..
T Consensus        36 ~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  114 (264)
T d1xqra1          36 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA  114 (264)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCC
Confidence            467789999989999999999999999997 5555 5899999999999999986 778889999999999999998767


Q ss_pred             ChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           85 DPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      ++.++..++++|.+++ .++.++..+.+.|+++.|+.+++++++.++..++.++.+++.        .+++.+..+.+.|
T Consensus       115 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~~~  186 (264)
T d1xqra1         115 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV--------GHPEHKGTLCSMG  186 (264)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHh--------ccHHHHHHHHHhh
Confidence            8899999999999999 567788889999999999999999999999999999999985        4578999999999


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHh
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMIS  202 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~  202 (246)
                      ++|.|+.++.++++++++.++++|++|+. ++..+..+..
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999988 5555566654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.7e-22  Score=177.73  Aligned_cols=215  Identities=15%  Similarity=0.199  Sum_probs=189.8

Q ss_pred             hhhhHHhHhhccccccHHHHHHh-CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC
Q 025930            6 LNTISVKSEDIRAQSNQEKIVEA-GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE   84 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~i~~~-g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~   84 (246)
                      ..++.++.+++.++..+..++.. |+++.|+.+|++.+++.+++.|+.+|.+++.+++.+..+++.|+++.|+.++++ +
T Consensus        35 ~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~-~  113 (529)
T d1jdha_          35 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS-P  113 (529)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC-S
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCC-C
Confidence            45677888998888888888765 679999999988778889999999999999999999999999999999999988 6


Q ss_pred             ChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           85 DPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        85 ~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      ++.++..|+++|.|++ .++..+..+.+.|+++.|+.++++++++++..++.++.+++.        .+++.+..+.+.|
T Consensus       114 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~~~  185 (529)
T d1jdha_         114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--------GNQESKLIILASG  185 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh--------hhhHHHHHHHhcc
Confidence            7999999999999999 556677788899999999999999999999999999999995        5578889999999


Q ss_pred             ChHHHHHcccCC-ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          164 ALPWIVQNSNNE-ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       164 ~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      +++.|+.++..+ ++.++..++.++.+++.+++++..+.+.|+++.|+.++.+.+.+ .+..+.+++.
T Consensus       186 ~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~-~~~~a~~~l~  252 (529)
T d1jdha_         186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQNCLWTLR  252 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHH-HHHHHHHHHH
T ss_pred             cchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchh-hhhhhhhHHH
Confidence            999999999655 56899999999999999999999999999999999999865544 4566666664

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.7e-21  Score=173.38  Aligned_cols=207  Identities=21%  Similarity=0.216  Sum_probs=179.5

Q ss_pred             HHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhc-CcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc
Q 025930           25 IVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQ-GGIGLLSTTAANAEDPQTLRMVAGAIANLCGND  103 (246)
Q Consensus        25 i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~  103 (246)
                      -...+.||.|+.+|++. |..++..|+.++++++.++..+..++.. |+++.++.++++..+.++++.++++|.+++.++
T Consensus        13 ~~~~~aip~L~~lL~~~-~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (529)
T d1jdha_          13 ELATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             ----CHHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc
Confidence            34468899999999885 8889999999999999998888888764 568999999987678899999999999999999


Q ss_pred             hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930          104 KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       104 ~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                      +++..+++.|+++.|+.+|++++++++..|+.+|.|++.        +.+..++.+.+.|++|.|+.++++++++++..+
T Consensus        92 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~--------~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a  163 (529)
T d1jdha_          92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL--------HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT  163 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--------HCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred             hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhc--------ccchhhhHHHhcCCchHHHHHHHccChHHHHHH
Confidence            999999999999999999999999999999999999996        346788889999999999999999999999999


Q ss_pred             HHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc---ChhHHHHHH
Q 025930          184 ELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS---SPAFQAEMR  240 (246)
Q Consensus       184 ~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~---~~~~~~e~~  240 (246)
                      +.+|.+++. +++.+..+...|+++.|+.++...+....+..+.+++.+   .++.+..+-
T Consensus       164 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~  224 (529)
T d1jdha_         164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV  224 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhh
Confidence            999999987 666788888999999999999887777777777776654   444544443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.4e-20  Score=162.65  Aligned_cols=228  Identities=16%  Similarity=0.211  Sum_probs=181.1

Q ss_pred             hhhhHHhHhhcccccc--HHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhc
Q 025930            6 LNTISVKSEDIRAQSN--QEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~--~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~   82 (246)
                      ++++..+.++...+.+  ++.+++.|++|+|+++|++.+++.++..|+++|.+++.+ ++.+..+++.|+++.++.++++
T Consensus        31 ~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~  110 (434)
T d1q1sc_          31 LQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS  110 (434)
T ss_dssp             HHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhcccc
Confidence            4456666666444444  578999999999999998776788899999999999876 6788899999999999999988


Q ss_pred             CCChHHHHHHHHHHHHhhC-CchhHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcccccccccCChhhh
Q 025930           83 AEDPQTLRMVAGAIANLCG-NDKLQLKLRGEGGIKALLGMVRCGH-----PDVLAQVARGIANFAKCESRASTQGTKTGR  156 (246)
Q Consensus        83 ~~~~~~~~~a~~aL~~L~~-~~~~~~~l~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~  156 (246)
                       ++.++++.++++|.|++. +++.+..+.+.|+++.++.++..++     ......++..+.+++..        .....
T Consensus       111 -~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~  181 (434)
T d1q1sc_         111 -PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN--------KNPAP  181 (434)
T ss_dssp             -SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCC--------CTTCC
T ss_pred             -CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhc--------ccccc
Confidence             679999999999999995 5677888889999999999997543     34566778888888853        23334


Q ss_pred             HHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc----
Q 025930          157 SLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQHE-VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS----  231 (246)
Q Consensus       157 ~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~----  231 (246)
                      ......+++|.++.++..++++++..++++|.+|+.++ +.+..+...|+++.|+.++..+ +..++..|.+++.+    
T Consensus       182 ~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~-~~~~~~~al~~l~~l~~~  260 (434)
T d1q1sc_         182 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTG  260 (434)
T ss_dssp             CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccc-hhhhhhchhhhhhhHHhh
Confidence            44445678999999999999999999999999999854 4566677899999999999855 56677888888865    


Q ss_pred             ChhHHHHHHHhh
Q 025930          232 SPAFQAEMRRLR  243 (246)
Q Consensus       232 ~~~~~~e~~~~~  243 (246)
                      .++.+.++-+.+
T Consensus       261 ~~~~~~~~~~~~  272 (434)
T d1q1sc_         261 TDEQTQKVIDAG  272 (434)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             hhHHHHHHHhcc
Confidence            344455544443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.9e-20  Score=164.45  Aligned_cols=205  Identities=15%  Similarity=0.188  Sum_probs=175.1

Q ss_pred             ccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHH
Q 025930           20 SNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIAN   98 (246)
Q Consensus        20 ~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~   98 (246)
                      ...+.+++.|++|.|+.+++...++.++..|+++|+|++.+ +.....+.+.|+++.++.++.+ ++.+++..++++|.|
T Consensus       110 ~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~n  188 (503)
T d1wa5b_         110 PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGN  188 (503)
T ss_dssp             CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHH
T ss_pred             chHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcC-CChhHHHHHHHHHHH
Confidence            34678999999999999999877888999999999999876 5567778899999999999998 578999999999999


Q ss_pred             hhC-CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCCh
Q 025930           99 LCG-NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS  177 (246)
Q Consensus        99 L~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~  177 (246)
                      ++. +++++..+.+.|++++++.++.+.++.++..+++++.|++...        +.........+++|.++.++...++
T Consensus       189 ia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~--------~~~~~~~~~~~~l~~l~~~l~~~d~  260 (503)
T d1wa5b_         189 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK--------KPQPDWSVVSQALPTLAKLIYSMDT  260 (503)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS--------SSCCCHHHHGGGHHHHHHHTTCCCH
T ss_pred             HhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC--------ccchHHHHHHHHHHHHHHHhccccH
Confidence            994 6788999999999999999999999999999999999999632        2233333446889999999999999


Q ss_pred             hHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          178 PIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       178 ~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      +++..++++|.+++. +++....+.+.|+++.++.++..++ ..++..|.+++.++..
T Consensus       261 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~al~~l~nl~~  317 (503)
T d1wa5b_         261 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVT  317 (503)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCc-hhhhhhHHHHHHHHHH
Confidence            999999999999987 5556788999999999999998554 5567788888865443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=4.6e-20  Score=159.32  Aligned_cols=217  Identities=18%  Similarity=0.262  Sum_probs=186.2

Q ss_pred             hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++.+.+++. .++++..+++.|++|.|+++|+++ ++.+++.|+++|+|++.+ ++.+..+.+.|+++.++.++...
T Consensus        75 ~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~  153 (434)
T d1q1sc_          75 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP  153 (434)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSS
T ss_pred             HHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccC-CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhc
Confidence            457788999965 457888999999999999999986 888999999999999876 67788888899988777765431


Q ss_pred             ----------------------------------------------CChHHHHHHHHHHHHhhCC-chhHHHHHhcCCHH
Q 025930           84 ----------------------------------------------EDPQTLRMVAGAIANLCGN-DKLQLKLRGEGGIK  116 (246)
Q Consensus        84 ----------------------------------------------~~~~~~~~a~~aL~~L~~~-~~~~~~l~~~g~i~  116 (246)
                                                                    +|++++..++++|.+++.. ++....+...|+++
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  233 (434)
T d1q1sc_         154 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVP  233 (434)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHH
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccch
Confidence                                                          2788888999999999954 45566677899999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-Cch
Q 025930          117 ALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEV  195 (246)
Q Consensus       117 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~  195 (246)
                      .++.++.+++++++..++.++.+++.        ++++.+..+.+.|+++.++.++.+.+++++..++++|.+++. +++
T Consensus       234 ~Lv~ll~~~~~~~~~~al~~l~~l~~--------~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  305 (434)
T d1q1sc_         234 QLVKLLGATELPIVTPALRAIGNIVT--------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD  305 (434)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHTT--------SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred             hcccccccchhhhhhchhhhhhhHHh--------hhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccch
Confidence            99999999999999999999999994        557888899999999999999999999999999999999987 566


Q ss_pred             hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          196 NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       196 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      .+..+.+.|+++.++.++.+++ ..++..|.+++.+.
T Consensus       306 ~~~~i~~~~~i~~li~~l~~~~-~~v~~~a~~~l~nl  341 (434)
T d1q1sc_         306 QIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNY  341 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhhHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            7788889999999999998655 55778888888753

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.8e-21  Score=155.51  Aligned_cols=188  Identities=17%  Similarity=0.162  Sum_probs=163.2

Q ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHHHhcCCHHHHHHH
Q 025930           43 DETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKLRGEGGIKALLGM  121 (246)
Q Consensus        43 ~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~L~~l  121 (246)
                      +...+..|+.+|.+++.+.+++..+...||++.++..+.+.++++++..|+++|.+++ +++.++..+.+.|+++.|+.+
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            5566778999999999998899999999999999874444478999999999999999 567888899999999999999


Q ss_pred             hc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHH
Q 025930          122 VR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKD  199 (246)
Q Consensus       122 l~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~  199 (246)
                      +. ..++.++..++.++.+++.        +++..+..+...|+++.|+.+++++++.++..++++|++++. +++.+..
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~--------~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVR--------EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhc--------cchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH
Confidence            96 5678899999999999994        567889999999999999999999999999999999999976 7889999


Q ss_pred             HHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc----ChhHHHHH
Q 025930          200 MISGGALWELVRISRDCSREDIRTLAHRTLTS----SPAFQAEM  239 (246)
Q Consensus       200 i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~----~~~~~~e~  239 (246)
                      +.+.|+++.|+.++++++ ..++..|.++|.+    .|+...+.
T Consensus       182 ~~~~~~v~~L~~lL~~~~-~~~~~~a~~aL~~L~~~~~~~~~~~  224 (264)
T d1xqra1         182 LCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVTDFPQGVREC  224 (264)
T ss_dssp             HHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhhhHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999999998654 5567788888864    44444443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-19  Score=155.60  Aligned_cols=216  Identities=20%  Similarity=0.249  Sum_probs=179.3

Q ss_pred             hhhhHHhHhhcc-ccccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIR-AQSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAM-NETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~-~~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++.+.|+|. ++++|..+++.|+||+|+++|+++ ++.++..|+++|++|+. +++++..+.+.||++.++.++.+.
T Consensus        20 ~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~   98 (457)
T d1xm9a1          20 AIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT   98 (457)
T ss_dssp             HHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhcc
Confidence            457889999986 688999999999999999999986 88899999999999985 478999999999999998876542


Q ss_pred             C-------------------------------------------------------------------------------
Q 025930           84 E-------------------------------------------------------------------------------   84 (246)
Q Consensus        84 ~-------------------------------------------------------------------------------   84 (246)
                      .                                                                               
T Consensus        99 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~  178 (457)
T d1xm9a1          99 GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ  178 (457)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHH
Confidence            1                                                                               


Q ss_pred             --------------------------------------------------------------------------------
Q 025930           85 --------------------------------------------------------------------------------   84 (246)
Q Consensus        85 --------------------------------------------------------------------------------   84 (246)
                                                                                                      
T Consensus       179 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (457)
T d1xm9a1         179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMM  258 (457)
T ss_dssp             HHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------------
T ss_pred             HHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------ChHHHHHHHHHHHHhhCCch------hHHHHHhcCCHHHHHH
Q 025930           85 --------------------------------------DPQTLRMVAGAIANLCGNDK------LQLKLRGEGGIKALLG  120 (246)
Q Consensus        85 --------------------------------------~~~~~~~a~~aL~~L~~~~~------~~~~l~~~g~i~~L~~  120 (246)
                                                            ++.....+.+++.+++....      .+..+.+.|+++.|+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~  338 (457)
T d1xm9a1         259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR  338 (457)
T ss_dssp             -------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHh
Confidence                                                  34556667777777763321      2344557789999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC------ChhHHHHHHHHHHHhcc-C
Q 025930          121 MVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE------ASPIRRHIELALCHLAQ-H  193 (246)
Q Consensus       121 ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~------~~~v~~~a~~aL~~La~-~  193 (246)
                      ++.++++.++..++.+++||+.         +++.++.+.+ ++++.++.++...      +++++..++.+|.+|+. +
T Consensus       339 ~l~~~~~~v~~~a~~~l~~La~---------~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~  408 (457)
T d1xm9a1         339 LLQSGNSDVVRSGASLLSNMSR---------HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ  408 (457)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHT---------SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC
T ss_pred             hhcCccHHHHHHHHHHHHHHhh---------ChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999994         4577777764 6799999988543      45799999999999986 7


Q ss_pred             chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          194 EVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       194 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      +++++.+.+.|+++.|+.++++.++..++++|..+|.+.
T Consensus       409 ~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L  447 (457)
T d1xm9a1         409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM  447 (457)
T ss_dssp             THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            788999999999999999999877778888898888775

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.1e-19  Score=160.61  Aligned_cols=215  Identities=14%  Similarity=0.200  Sum_probs=184.4

Q ss_pred             hhhhHHhHhhccc-cccHHHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcC
Q 025930            6 LNTISVKSEDIRA-QSNQEKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANA   83 (246)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~   83 (246)
                      ..+++++.+++.. +.....+.+.|+++.++.+|.++ ++.++..|+++|+|++.+ +..|..+.+.|+++.|+.++.+ 
T Consensus       138 ~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~-~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~-  215 (503)
T d1wa5b_         138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-  215 (503)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCC-ChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc-
Confidence            4578889999754 55667788999999999999986 788999999999999876 7899999999999999999988 


Q ss_pred             CChHHHHHHHHHHHHhhCCc-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhC
Q 025930           84 EDPQTLRMVAGAIANLCGND-KLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDD  162 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~  162 (246)
                      .+..+...++++|.+++.+. .........++++.++.++.+++++++..++.++.+++.        +.++....+.+.
T Consensus       216 ~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~--------~~~~~~~~~~~~  287 (503)
T d1wa5b_         216 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--------GPQEAIQAVIDV  287 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--------SCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc--------CCchhhhhhhhh
Confidence            56888889999999999543 334445567899999999999999999999999999994        557788889999


Q ss_pred             CChHHHHHcccCCChhHHHHHHHHHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          163 GALPWIVQNSNNEASPIRRHIELALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       163 g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      |+++.++.++.++++.++..++.+|.+++. ++.....+.+.|+++.|..+++++ ++.++..+.+++.+
T Consensus       288 ~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~n  356 (503)
T d1wa5b_         288 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISN  356 (503)
T ss_dssp             TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            999999999999999999999999999987 445567788999999999999855 45567777888764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.7e-18  Score=145.73  Aligned_cols=176  Identities=18%  Similarity=0.235  Sum_probs=146.9

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQ  106 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~  106 (246)
                      +.||.||++|+++ +|.++..|+++|+|++.+ +++|..+.+.||+|.|+.++++ ++++++..|+++|.+|+ .+++++
T Consensus         2 ~~ip~lv~~L~~~-~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence            4599999999997 888999999999999865 7899999999999999999998 68999999999999999 678999


Q ss_pred             HHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcc-------------
Q 025930          107 LKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNS-------------  172 (246)
Q Consensus       107 ~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll-------------  172 (246)
                      ..+.+.|+++.++.++. +.+++++..++.++.+++..         +..+......|..+.+..++             
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  150 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST---------DELKEELIADALPVLADRVIIPFSGWCDGNSNM  150 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS---------SSTHHHHHHHHHHHHHHHTTHHHHTCC------
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhh---------hhhHHHHHhcccHHHHHHHHhhhhhhhcchhhh
Confidence            99999999999999987 46788999999999999953         34444444444333333322             


Q ss_pred             --cCCChhHHHHHHHHHHHhccCchhHHHHHh-CCcHHHHHHHHhc
Q 025930          173 --NNEASPIRRHIELALCHLAQHEVNAKDMIS-GGALWELVRISRD  215 (246)
Q Consensus       173 --~~~~~~v~~~a~~aL~~La~~~~~~~~i~~-~g~i~~L~~ll~~  215 (246)
                        ...++.++..++++|.+++.+++++..+.. .|+++.++.+++.
T Consensus       151 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~  196 (457)
T d1xm9a1         151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhc
Confidence              334789999999999999998888877765 5788999999864

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=6.1e-06  Score=72.37  Aligned_cols=181  Identities=12%  Similarity=0.075  Sum_probs=126.4

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLK  108 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~  108 (246)
                      ++.+.+++++. ++.+++.|+.+++.++..-....  .....++.+..++++ ++..++..++.++..++.  .++..  
T Consensus       166 ~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~i~~~~~~~~~--  239 (588)
T d1b3ua_         166 RQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASD-EQDSVRLLAVEACVNIAQLLPQEDL--  239 (588)
T ss_dssp             HHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTC-SCHHHHTTHHHHHHHHHHHSCHHHH--
T ss_pred             HHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHHHhcC-CchhhHHHHHHHHHHhhccCCHHHH--
Confidence            56667777764 88889999999999876532221  122346677777776 578888899999988872  22221  


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALC  188 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~  188 (246)
                        ....++.+..++.++++.++..++.++.+++.           ...........+|.+..++.+.++++|..++.++.
T Consensus       240 --~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~-----------~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~  306 (588)
T d1b3ua_         240 --EALVMPTLRQAAEDKSWRVRYMVADKFTELQK-----------AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK  306 (588)
T ss_dssp             --HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHH-----------HHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcccccHHHHHHHHHhHHHHHH-----------HhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHH
Confidence              12257888888888899999999999999884           22222334567899999999999999999999999


Q ss_pred             Hhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          189 HLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       189 ~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      .++.  .............++.+...+.+. +..++..+...+..
T Consensus       307 ~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~~~~~l~~  350 (588)
T d1b3ua_         307 EFCENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMG  350 (588)
T ss_dssp             HHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGG
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHhh
Confidence            9875  333444444455677777777754 44455555555543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.2e-06  Score=72.82  Aligned_cols=181  Identities=11%  Similarity=0.021  Sum_probs=108.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLKLR  110 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~  110 (246)
                      +|.+.+.+++. ++.++..++..+..++..-..  ........+.+..++.+ +...++..|+.+|..++..-.  ....
T Consensus       404 l~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~D-~~~~VR~~A~~~L~~l~~~~~--~~~~  477 (588)
T d1b3ua_         404 LPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFG--KEWA  477 (588)
T ss_dssp             HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHC--HHHH
T ss_pred             HHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHhC--cHHH
Confidence            44455555443 555555555555555322000  00001123344455555 457778788888877762110  0111


Q ss_pred             hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930          111 GEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                      ....++.+..++.+++...+..++.++..+..           ...........+|.+..++.++.+.||..++.+|..+
T Consensus       478 ~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~-----------~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i  546 (588)
T d1b3ua_         478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSE-----------VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI  546 (588)
T ss_dssp             HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----------HcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            22357777888888888888888887777763           2222233355899999999999999999999999999


Q ss_pred             ccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          191 AQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       191 a~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                      ....+..  ..+....+.+.++ .++++.++|..|.+++..
T Consensus       547 ~~~~~~~--~~~~~i~~~l~~L-~~D~d~dVr~~A~~al~~  584 (588)
T d1b3ua_         547 GPILDNS--TLQSEVKPILEKL-TQDQDVDVKYFAQEALTV  584 (588)
T ss_dssp             GGGSCHH--HHHHHHHHHHHHH-TTCSSHHHHHHHHHHHHH
T ss_pred             HHHcCcH--hHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHH
Confidence            7633321  1222234444554 457788899999998864

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.6e-05  Score=62.35  Aligned_cols=133  Identities=11%  Similarity=0.004  Sum_probs=91.9

Q ss_pred             hCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHH
Q 025930           28 AGGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQL  107 (246)
Q Consensus        28 ~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~  107 (246)
                      ....+.|+.+|+++ ++.++..|+.+|+.+...          ..++.++.++++ +|+.++..|+.+|..+........
T Consensus        18 ~~~~~~L~~~L~d~-~~~vR~~A~~~L~~~~~~----------~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          18 KLNDDELFRLLDDH-NSLKRISSARVLQLRGGQ----------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             TSCHHHHHHHTTCS-SHHHHHHHHHHHHHHCCH----------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             cCCHHHHHHHhcCC-CHHHHHHHHHHHHhhCCH----------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccccccc
Confidence            45577899999985 899999999999887642          257888999987 679999999999998875444433


Q ss_pred             HHHhcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHH
Q 025930          108 KLRGEGGIKALL-GMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELA  186 (246)
Q Consensus       108 ~l~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~a  186 (246)
                      .+     ++.+. .++.++++.++..++.+|.+++...        ....     ...++.+...+.+.++.++..++.+
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~-----~~~~~~l~~~~~d~~~~vr~~a~~~  147 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKN--------PIYS-----PKIVEQSQITAFDKSTNVRRATAFA  147 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC--------GGGH-----HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHcccc--------chhh-----HHHHHHHHHHhcCcchHHHHHHHHH
Confidence            32     22333 3456788999999999999887421        1111     1245566666666666676666665


Q ss_pred             HHHh
Q 025930          187 LCHL  190 (246)
Q Consensus       187 L~~L  190 (246)
                      +...
T Consensus       148 l~~~  151 (276)
T d1oyza_         148 ISVI  151 (276)
T ss_dssp             HHTC
T ss_pred             Hhhc
Confidence            5543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=1.2e-05  Score=68.57  Aligned_cols=219  Identities=9%  Similarity=0.020  Sum_probs=144.5

Q ss_pred             hHHhHhhccccccHHHHHH--hCCHHHHHHHhcC----------------CCCHHHHHHHHHHHHHhcCCcchHHHHHhc
Q 025930            9 ISVKSEDIRAQSNQEKIVE--AGGLTSLLMLLGS----------------SEDETIHRVAAGAIANLAMNETNQELIMTQ   70 (246)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~--~g~i~~Li~ll~~----------------~~~~~~~~~a~~~L~~la~~~~~~~~i~~~   70 (246)
                      ++.+..+-..++.|..+..  ...+++|+..|+.                +....++.+++.+++-|+.+++....+.+.
T Consensus       186 v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~  265 (477)
T d1ho8a_         186 IRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQK  265 (477)
T ss_dssp             HHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTT
T ss_pred             HHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            3445566667788888753  4457777777654                113457788999999999998888888875


Q ss_pred             C--cHHHHHHHHhcCCChHHHHHHHHHHHHhhCCch------hHHHHHhcCCHHHHHHHhc---CCCHHHHHHHHHHHHH
Q 025930           71 G--GIGLLSTTAANAEDPQTLRMVAGAIANLCGNDK------LQLKLRGEGGIKALLGMVR---CGHPDVLAQVARGIAN  139 (246)
Q Consensus        71 g--~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~------~~~~l~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~n  139 (246)
                      .  .++.++.+++...-+++.+.++.++.|++..+.      ....++..++.+ ++..|.   -.|+++..-.-..--.
T Consensus       266 ~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~-~l~~L~~r~~~Dedl~edl~~L~~~  344 (477)
T d1ho8a_         266 YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEI  344 (477)
T ss_dssp             SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhH-HHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            4  488889999876778898899999999984321      123345556555 455554   2477766533322111


Q ss_pred             hhcc-cccccc------------cCC---------hhhhHHHHhC--CChHHHHHccc----------CCChhHHHHHHH
Q 025930          140 FAKC-ESRAST------------QGT---------KTGRSLLIDD--GALPWIVQNSN----------NEASPIRRHIEL  185 (246)
Q Consensus       140 L~~~-~~~~~~------------~~~---------~~~~~~l~~~--g~i~~Lv~ll~----------~~~~~v~~~a~~  185 (246)
                      |..+ ....+.            .++         .++...+.++  ..+..|+.++.          +.|+.+-..||.
T Consensus       345 L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~  424 (477)
T d1ho8a_         345 LENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALN  424 (477)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhh
Confidence            1110 000000            011         1222223322  34778899986          236777788899


Q ss_pred             HHHHhcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          186 ALCHLAQ-HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       186 aL~~La~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      =|+.++. +|.+|..+.+-|+=..+++++. +++++++..|..++
T Consensus       425 DiGefvr~~P~gr~il~~lg~K~~vM~Lm~-h~d~~Vr~eAL~av  468 (477)
T d1ho8a_         425 DITHVVELLPESIDVLDKTGGKADIMELLN-HSDSRVKYEALKAT  468 (477)
T ss_dssp             HHHHHHHHCTTHHHHHHHHSHHHHHHHHTS-CSSHHHHHHHHHHH
T ss_pred             hHHHHHHHCcchhHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHH
Confidence            9999987 8888888888899999999997 56677888887765

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=0.00014  Score=56.83  Aligned_cols=102  Identities=9%  Similarity=0.055  Sum_probs=71.9

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCc-hhHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGND-KLQL  107 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~-~~~~  107 (246)
                      ..++.|+.+++++ ++.++..|+.+|+.+.........+     ++.+...+.+.+++.++..++.+|.+++... ....
T Consensus        50 ~~~~~l~~~l~d~-~~~vr~~a~~aL~~l~~~~~~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~  123 (276)
T d1oyza_          50 DAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP  123 (276)
T ss_dssp             HHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTTHHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             hHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccccccch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH
Confidence            4589999999986 8999999999999997665443333     3445554444478999999999999987332 2212


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFA  141 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~  141 (246)
                           ..++.+...+.++++.++..++.++....
T Consensus       124 -----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_         124 -----KIVEQSQITAFDKSTNVRRATAFAISVIN  152 (276)
T ss_dssp             -----HHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence                 23566777777778888877776666543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.12  E-value=5e-06  Score=57.09  Aligned_cols=87  Identities=17%  Similarity=0.108  Sum_probs=71.9

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhHHH
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQLK  108 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~  108 (246)
                      ..+++|+..|+++ ++.++..|+.+|+++...          +.++.|..++.+ +++.++..++.+|..+..       
T Consensus        22 ~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~d-~~~~VR~~a~~aL~~i~~-------   82 (111)
T d1te4a_          22 EAFEPLLESLSNE-DWRIRGAAAWIIGNFQDE----------RAVEPLIKLLED-DSGFVRSGAARSLEQIGG-------   82 (111)
T ss_dssp             TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCSH----------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS-------
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHhcchh----------hhHHHHHhhhcc-chhHHHHHHHHHHHHhCc-------
Confidence            4689999999986 889999999999887532          257889999988 689999999999998742       


Q ss_pred             HHhcCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025930          109 LRGEGGIKALLGMVRCGHPDVLAQVARGI  137 (246)
Q Consensus       109 l~~~g~i~~L~~ll~~~~~~~~~~a~~~L  137 (246)
                         .+.++.|..++.++++.++..|+.+|
T Consensus        83 ---~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          83 ---ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             ---HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             ---cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence               23478888899999999999998776

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.00  E-value=4.3e-06  Score=57.45  Aligned_cols=108  Identities=15%  Similarity=0.159  Sum_probs=82.4

Q ss_pred             CChHHHHHHHHHHHHhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC
Q 025930           84 EDPQTLRMVAGAIANLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG  163 (246)
Q Consensus        84 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g  163 (246)
                      +|+.++..|+.+|..+.           ...++.|+..+.++++.++..++.+|.++..                   .+
T Consensus         4 ~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-------------------~~   53 (111)
T d1te4a_           4 ENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------------------ER   53 (111)
T ss_dssp             SCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------------------HH
T ss_pred             cCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-------------------hh
Confidence            34556655666655431           2367889999999999999999999887662                   13


Q ss_pred             ChHHHHHcccCCChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 025930          164 ALPWIVQNSNNEASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSS  232 (246)
Q Consensus       164 ~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  232 (246)
                      .+|.|..++.++++.+|..|+.+|..+..          .+.++.|..++.+ +++.++..|..+|.++
T Consensus        54 ~~~~L~~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d-~~~~vr~~A~~aL~th  111 (111)
T d1te4a_          54 AVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAET-GTGFARKVAVNYLETH  111 (111)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTS-CCTHHHHHHHHHGGGC
T ss_pred             hHHHHHhhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcC-CCHHHHHHHHHHHHcc
Confidence            68999999999999999999999998753          1357778888874 4567889999988753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=4e-05  Score=65.30  Aligned_cols=173  Identities=11%  Similarity=0.109  Sum_probs=121.3

Q ss_pred             hHHhHhhccccccHHHHHHhC--CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--ch----HHHHHhcCcHHHHHHHH
Q 025930            9 ISVKSEDIRAQSNQEKIVEAG--GLTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TN----QELIMTQGGIGLLSTTA   80 (246)
Q Consensus         9 ~~~~~~~~~~~~~~~~i~~~g--~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~----~~~i~~~g~i~~L~~ll   80 (246)
                      +-++=.++++++....+.+.+  .|+.|+++++...-+.+.+.++.+|.|+...+  .+    ...++..++.+.+-.+.
T Consensus       246 ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~  325 (477)
T d1ho8a_         246 LLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS  325 (477)
T ss_dssp             HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHh
Confidence            334445678888888887764  49999999988777888899999999997552  12    34456666666554444


Q ss_pred             h-cCCChHHHHHHHHHH--------HHhhCCchhHHH------------------------HHh--cCCHHHHHHHhc--
Q 025930           81 A-NAEDPQTLRMVAGAI--------ANLCGNDKLQLK------------------------LRG--EGGIKALLGMVR--  123 (246)
Q Consensus        81 ~-~~~~~~~~~~a~~aL--------~~L~~~~~~~~~------------------------l~~--~g~i~~L~~ll~--  123 (246)
                      . .-.|+++.+.. ..|        ..+++.++....                        +-+  ...++.|+++|+  
T Consensus       326 ~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~  404 (477)
T d1ho8a_         326 ERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  404 (477)
T ss_dssp             SSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhc
Confidence            3 23567665322 222        222222222221                        111  125788899986  


Q ss_pred             --------CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHHHHh
Q 025930          124 --------CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELALCHL  190 (246)
Q Consensus       124 --------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~L  190 (246)
                              +.|+.+..-||.-++.++.        ..|.+|..+.+.|+=..+++++.++|++||++|+.|+..+
T Consensus       405 ~~~~~~~~s~D~~~lAVAc~DiGefvr--------~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         405 VRNGDVNAKQEKIIIQVALNDITHVVE--------LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  471 (477)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHH--------HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceeehhhhhHHHHHH--------HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence                    3467788899999999995        4579999999999999999999999999999999998766

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00027  Score=64.81  Aligned_cols=146  Identities=11%  Similarity=-0.042  Sum_probs=97.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhcCCcc--hHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHH
Q 025930           32 TSLLMLLGSSEDETIHRVAAGAIANLAMNET--NQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQL  107 (246)
Q Consensus        32 ~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~  107 (246)
                      +.+.+.+.++ ++..++.|+.+++.++.+..  ....+-  ..++.++..+++ +++.++..++++|..++.  .+....
T Consensus       398 ~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l~--~li~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         398 PLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTHH--HHHHHHHHHTTS-SCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccch--hhhHHHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4444555554 78888889999999987631  111111  246777788877 679999999999998872  111222


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                      .. -...++.++..+.++++.++..|+.+|.+++...+       +.....+  ...++.++..+...+...+..+..++
T Consensus       474 ~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~-------~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al  543 (888)
T d1qbkb_         474 TY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC-------TELVPYL--AYILDTLVFAFSKYQHKNLLILYDAI  543 (888)
T ss_dssp             HH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHT-------TSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-------hhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            22 23568888888989999999999999999984210       1111111  12456777777777777777777777


Q ss_pred             HHhc
Q 025930          188 CHLA  191 (246)
Q Consensus       188 ~~La  191 (246)
                      ..++
T Consensus       544 ~~l~  547 (888)
T d1qbkb_         544 GTLA  547 (888)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00078  Score=55.70  Aligned_cols=187  Identities=11%  Similarity=0.038  Sum_probs=112.3

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cc-hHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCchhH-
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ET-NQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQ-  106 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~-  106 (246)
                      ..+.+...+.++ ++.++..++.+|..++.. ++ ....+ .....+.+.....+ .++.++..++..+..++...... 
T Consensus       217 ~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~  293 (458)
T d1ibrb_         217 IMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLA  293 (458)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666664 888888899999988644 21 11111 11122333444455 57888888888888776221100 


Q ss_pred             --------------------HHHHhcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHH
Q 025930          107 --------------------LKLRGEGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLL  159 (246)
Q Consensus       107 --------------------~~l~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l  159 (246)
                                          ........++.+...+..       .+..++..+..++..++...      + ++.    
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~------~-~~~----  362 (458)
T d1ibrb_         294 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC------E-DDI----  362 (458)
T ss_dssp             HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT------T-TTH----
T ss_pred             HhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhc------c-Hhh----
Confidence                                000111123444444431       23347778888888777421      1 111    


Q ss_pred             HhCCChHHHHHcccCCChhHHHHHHHHHHHhccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          160 IDDGALPWIVQNSNNEASPIRRHIELALCHLAQHEV--NAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       160 ~~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      . ...++.+.+.+.+++..+|..|+.+|+.++....  ..+. .-...++.++..+++ ++..+|..|.++|..+.
T Consensus       363 ~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d-~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         363 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKD-PSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence            1 1356777888888999999999999999986322  1111 124578889999985 55678999999997543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00029  Score=66.31  Aligned_cols=173  Identities=13%  Similarity=0.171  Sum_probs=109.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh---CCchhHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC---GNDKLQL  107 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~---~~~~~~~  107 (246)
                      .+.+++.++++ ++.++..|+.+|++++.....       ..+|.++..+.+  ++..+...+.++..+.   .......
T Consensus       855 ~~~l~~~l~~~-~~~vr~aAa~aLg~l~~~~~~-------~~lp~il~~l~~--~~~~~~~ll~al~ei~~~~~~~~~~~  924 (1207)
T d1u6gc_         855 KSVILEAFSSP-SEEVKSAASYALGSISVGNLP-------EYLPFVLQEITS--QPKRQYLLLHSLKEIISSASVVGLKP  924 (1207)
T ss_dssp             HHHHHHGGGCS-CHHHHHHHHHHHHHHHHHTHH-------HHHHHHHHHHHS--CGGGHHHHHHHHHHHHHSSCSTTTHH
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhHH-------HHhHHHHHHHhc--CchHHHHHHHHHHHHHHhcchhhhHH
Confidence            45567777775 777888888888887543211       125666666665  2334445556665543   1111111


Q ss_pred             HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH
Q 025930          108 KLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL  187 (246)
Q Consensus       108 ~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL  187 (246)
                       .. ...++.|+..+.++++.++..++.+++.|+..        ++        ...+|.|..++.++++.+|..++.++
T Consensus       925 -~~-~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~--------~~--------~~~lp~L~~~l~~~~~~~r~~ai~~l  986 (1207)
T d1u6gc_         925 -YV-ENIWALLLKHCECAEEGTRNVVAECLGKLTLI--------DP--------ETLLPRLKGYLISGSSYARSSVVTAV  986 (1207)
T ss_dssp             -HH-HHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHS--------SG--------GGTHHHHTTTSSSSCHHHHHHHHHHT
T ss_pred             -HH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc--------CH--------HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence             11 11234455555667788898899999888742        12        24789999999999999999999999


Q ss_pred             HHhccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          188 CHLAQHE-VNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       188 ~~La~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      ..+..+. ....... ...++.++..+++ ++..+|..|..+|.+..
T Consensus       987 ~~~~~~~~~~~~~~l-~~li~~ll~~l~d-~~~~vR~~al~~l~~~~ 1031 (1207)
T d1u6gc_         987 KFTISDHPQPIDPLL-KNCIGDFLKTLED-PDLNVRRVALVTFNSAA 1031 (1207)
T ss_dssp             GGGCCSSCCTHHHHH-HHHSTTTHHHHSS-SSTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcchhhHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH
Confidence            9886632 2222222 2255667777875 45678899999986533

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.0048  Score=54.89  Aligned_cols=189  Identities=13%  Similarity=0.068  Sum_probs=112.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCC--chhH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGN--DKLQ  106 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~  106 (246)
                      -..+++.+.++ ++.++..++.+++.++..+  ++++.    ..++.|+..+.+.++...+..++.++..++..  +...
T Consensus        97 k~~ll~~l~~~-~~~vr~~~a~~i~~i~~~~~p~~~wp----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~  171 (861)
T d2bpta1          97 KTNALTALVSI-EPRIANAAAQLIAAIADIELPHGAWP----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGTCCH----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCCcCchH----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            35667778775 7888999999999887542  21111    13566777777656677787888999988722  1111


Q ss_pred             HHHHh-cCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930          107 LKLRG-EGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       107 ~~l~~-~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                      ..+-. ...+..++..+.  ..+..++..+..++.++...-       .+...........++.+...+..++++++..+
T Consensus       172 ~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  244 (861)
T d2bpta1         172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI-------KNNMEREGERNYLMQVVCEATQAEDIEVQAAA  244 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-------HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH-------hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHH
Confidence            11100 112333344343  346789999999999877421       01111111122356777888888999999999


Q ss_pred             HHHHHHhcc-Cchh-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccCh
Q 025930          184 ELALCHLAQ-HEVN-AKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSP  233 (246)
Q Consensus       184 ~~aL~~La~-~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  233 (246)
                      +.++..++. .++. ...+.+  .+..+......+.++.++..+...+.+..
T Consensus       245 ~~~l~~i~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~v~~~~~~~l~~l~  294 (861)
T d2bpta1         245 FGCLCKIMSKYYTFMKPYMEQ--ALYALTIATMKSPNDKVASMTVEFWSTIC  294 (861)
T ss_dssp             HHHHHHHHHHHGGGCHHHHHH--THHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            999999976 2222 221211  23344333434556667777776665443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.086  Score=41.91  Aligned_cols=196  Identities=14%  Similarity=0.079  Sum_probs=144.8

Q ss_pred             HHHHHhCCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-cchH----HHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHH
Q 025930           23 EKIVEAGGLTSLLMLLGSSEDETIHRVAAGAIANLAMN-ETNQ----ELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIA   97 (246)
Q Consensus        23 ~~i~~~g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~~~~----~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~   97 (246)
                      +.+...+.+..|+..|..- +-..++.++.+..++-.. ...+    +-+..  --.++..++...+++++--.+-..|+
T Consensus        63 ~e~~~~d~l~~Li~~L~~L-~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCC-CCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHH
Confidence            4566678899999988875 667788888888888655 3333    33332  34667777777677888767777888


Q ss_pred             HhhCCchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCC---ChHHHHHcccC
Q 025930           98 NLCGNDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDG---ALPWIVQNSNN  174 (246)
Q Consensus        98 ~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g---~i~~Lv~ll~~  174 (246)
                      .....+.....+.....+..+.+.+..++-++..-|..++..+-.        ..+.....+...+   .+..+..++.+
T Consensus       140 Ecik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt--------~hk~~~aefl~~Nyd~Ff~~~~~LL~s  211 (330)
T d1upka_         140 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT--------RHKLLSAEFLEQHYDRFFSEYEKLLHS  211 (330)
T ss_dssp             HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH--------SSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred             HHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHH--------hCHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            878999999999988889999999999999999999999997653        2245555555444   46677889999


Q ss_pred             CChhHHHHHHHHHHHhccCchhHHHHHh----CCcHHHHHHHHhcCCHHHHHHHHHHHHc
Q 025930          175 EASPIRRHIELALCHLAQHEVNAKDMIS----GGALWELVRISRDCSREDIRTLAHRTLT  230 (246)
Q Consensus       175 ~~~~v~~~a~~aL~~La~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~  230 (246)
                      ++=-+|..++..|+.+-.++.+...|..    ..-+..++.++++ ..+.++--|.-..+
T Consensus       212 ~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd-~sk~Iq~EAFhVFK  270 (330)
T d1upka_         212 ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRD-KSRNIQFEAFHVFK  270 (330)
T ss_dssp             SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcC-chhhHHHHhhhHhh
Confidence            9999999999999999988888776643    2445556777774 44556666665554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.028  Score=45.81  Aligned_cols=145  Identities=9%  Similarity=0.052  Sum_probs=89.5

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCCcchHH---------------------HHHhcCcHHHHHHHHhcC------CCh
Q 025930           34 LLMLLGSSEDETIHRVAAGAIANLAMNETNQE---------------------LIMTQGGIGLLSTTAANA------EDP   86 (246)
Q Consensus        34 Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~---------------------~i~~~g~i~~L~~ll~~~------~~~   86 (246)
                      +...+++ .++.++..|+..+..++.......                     ...-...++.+...+...      ++.
T Consensus       263 ~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  341 (458)
T d1ibrb_         263 TIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW  341 (458)
T ss_dssp             HHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred             HHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccc
Confidence            3444455 477778888888887754321110                     000111234444444321      123


Q ss_pred             HHHHHHHHHHHHhhC--CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCC
Q 025930           87 QTLRMVAGAIANLCG--NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGA  164 (246)
Q Consensus        87 ~~~~~a~~aL~~L~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~  164 (246)
                      .++..+..++..++.  ..+....     .++.+...+.++++..+..++.+|+.++...      . ++..+... ...
T Consensus       342 ~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~------~-~~~~~~~l-~~i  408 (458)
T d1ibrb_         342 NPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGP------E-PSQLKPLV-IQA  408 (458)
T ss_dssp             SHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS------C-TTTTCTTT-TTH
T ss_pred             cHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc------C-HhHHHHHH-HHH
Confidence            467778888887762  2222222     3566777778899999999999999988421      0 11111111 357


Q ss_pred             hHHHHHcccCCChhHHHHHHHHHHHhcc
Q 025930          165 LPWIVQNSNNEASPIRRHIELALCHLAQ  192 (246)
Q Consensus       165 i~~Lv~ll~~~~~~v~~~a~~aL~~La~  192 (246)
                      +|.++..++++++.||..|+++|..++.
T Consensus       409 ~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         409 MPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999975

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.017  Score=53.81  Aligned_cols=183  Identities=11%  Similarity=0.076  Sum_probs=108.4

Q ss_pred             CCHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC----Cc-
Q 025930           29 GGLTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG----ND-  103 (246)
Q Consensus        29 g~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~----~~-  103 (246)
                      ..++.|+.+|.+. ++.+|..|+.+|+.++..-.... +.  ..++.|+..+.+ ++.+.+..+..+|..+..    .. 
T Consensus        45 ~i~~~ll~~L~D~-~~~Vq~~A~k~l~~l~~~~~~~~-~~--~l~~~L~~~l~~-~~~~~r~~~~~~L~~i~~~l~~~~~  119 (1207)
T d1u6gc_          45 KVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEYQ-VE--TIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASS  119 (1207)
T ss_dssp             HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCHHH-HH--HHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCcHhh-HH--HHHHHHHHHhcC-CchhhhHHHHHHHHHHHHhcccccc
Confidence            3578899999876 89999999999999977632221 11  245666666665 456677777777776641    11 


Q ss_pred             --hhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHH
Q 025930          104 --KLQLKLRGEGGIKALLGMVR-CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIR  180 (246)
Q Consensus       104 --~~~~~l~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~  180 (246)
                        .....+ ....++.+...+. ..+..++..++.++..+...-+..    -....     ...++.++..+.+.++.+|
T Consensus       120 ~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~----l~~~~-----~~il~~l~~~l~~~~~~vR  189 (1207)
T d1u6gc_         120 GSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL----LVNFH-----PSILTCLLPQLTSPRLAVR  189 (1207)
T ss_dssp             -CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS----CTTTH-----HHHHHHHGGGGGCSSHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHh----hHHHH-----HHHHHHHHHHhCCCCHHHH
Confidence              111111 1123444455444 456788888998888876431100    00111     2357788888898999999


Q ss_pred             HHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 025930          181 RHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTL  229 (246)
Q Consensus       181 ~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  229 (246)
                      +.|+.+|..++..-..  . .-...++.+++.+..+.....+..+..++
T Consensus       190 ~~A~~~l~~l~~~~~~--~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~l  235 (1207)
T d1u6gc_         190 KRTIIALGHLVMSCGN--I-VFVDLIEHLLSELSKNDSMSTTRTYIQCI  235 (1207)
T ss_dssp             HHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred             HHHHHHHHHHHHHCCH--H-HHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            9999999999763221  0 11234556665554443333333333333

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.17  E-value=0.002  Score=49.85  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             HHhCCHHHHHHHhcCCCCHHHHHHHHHHH-----HHhcCCc--chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHH---
Q 025930           26 VEAGGLTSLLMLLGSSEDETIHRVAAGAI-----ANLAMNE--TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGA---   95 (246)
Q Consensus        26 ~~~g~i~~Li~ll~~~~~~~~~~~a~~~L-----~~la~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~a---   95 (246)
                      ...-.++.|+.+++.+ |+.++..|+..|     ..+..++  +.|....+.=..+.|..++.+ +|..++..++..   
T Consensus        63 a~~a~~~~L~~Ll~D~-d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D-~d~~VR~~aa~~~~~  140 (233)
T d1lrva_          63 VRYSPVEALTPLIRDS-DEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAAD-RDYLVRAYVVQRIPP  140 (233)
T ss_dssp             HTTSCGGGGGGGTTCS-SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTC-SSHHHHHHHHHHSCG
T ss_pred             HhcCCHHHHHHHhcCC-CHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcC-CCHHHHHHHHhccch
Confidence            3344577788888875 888888887654     3444442  334444443234455555655 467776665543   


Q ss_pred             --HHHhhC--CchhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHH
Q 025930           96 --IANLCG--NDKLQLKLRGEGGIKALLGMVRCGHPDVLAQVAR  135 (246)
Q Consensus        96 --L~~L~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~  135 (246)
                        |..+..  +++.+..+...-+.+.|..+++++++.++..++.
T Consensus       141 ~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~  184 (233)
T d1lrva_         141 GRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVAS  184 (233)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHH
T ss_pred             hHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHH
Confidence              222222  2334444444444555666666666666666554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.011  Score=53.63  Aligned_cols=138  Identities=11%  Similarity=0.066  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhC--CchhHHHHHhcCCHHHHHHH
Q 025930           46 IHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCG--NDKLQLKLRGEGGIKALLGM  121 (246)
Q Consensus        46 ~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~--~~~~~~~l~~~g~i~~L~~l  121 (246)
                      ....+...+..+...  ......+.....++.+...+++ .++.+++.|..++..++.  .+..+..+-  ..++.+...
T Consensus       638 ~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~  714 (888)
T d1qbkb_         638 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD-KMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTN  714 (888)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCC-CChHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHH
Confidence            334445555555432  2223333344456667777776 578899999999888872  222222221  246777777


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCC--ChhHHHHHHHHHHHhcc-Cch
Q 025930          122 VRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNE--ASPIRRHIELALCHLAQ-HEV  195 (246)
Q Consensus       122 l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~v~~~a~~aL~~La~-~~~  195 (246)
                      +.++..+++.+++.+++.++..-       ..+.+..+  ..+++.|+..++++  +..++++++.+|+.|+. +++
T Consensus       715 L~~~~~~v~~~a~~~ig~ia~~~-------~~~~~py~--~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         715 LNPEFISVCNNATWAIGEISIQM-------GIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHT-------GGGGGGGS--HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             hCcCCHHHHHHHHHHHHHHHHHH-------HHHhhhhH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH
Confidence            88888899999999999988521       12222211  24678888888765  45699999999999976 444

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.023  Score=50.24  Aligned_cols=155  Identities=7%  Similarity=0.001  Sum_probs=92.2

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc--chHHHHHh-cCcHHHHHHHHh-cCCChHHHHHHHHHHHHhhCC-ch
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMNE--TNQELIMT-QGGIGLLSTTAA-NAEDPQTLRMVAGAIANLCGN-DK  104 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~--~~~~~i~~-~g~i~~L~~ll~-~~~~~~~~~~a~~aL~~L~~~-~~  104 (246)
                      .++.|++.+++.+++..+..|..+|..++..-  .....+-. ...+..++..+. ...+..++..+..++.++... +.
T Consensus       135 li~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~  214 (861)
T d2bpta1         135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN  214 (861)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhH
Confidence            46777888887766667777889998886442  11111110 011223333332 345678888999999888732 22


Q ss_pred             hH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHH
Q 025930          105 LQ-LKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       105 ~~-~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                      +. ........++.+...+.+++++++..+..++..++..-       .......+. .-..+.+....++.++.++..+
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~-------~~~~~~~l~-~~l~~l~~~~~~~~~~~v~~~~  286 (861)
T d2bpta1         215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY-------YTFMKPYME-QALYALTIATMKSPNDKVASMT  286 (861)
T ss_dssp             HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH-------GGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHH
T ss_pred             hHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHhcCccHHHHHHH
Confidence            11 11122235677888888999999999999999987420       011111111 1112233455566788999999


Q ss_pred             HHHHHHhcc
Q 025930          184 ELALCHLAQ  192 (246)
Q Consensus       184 ~~aL~~La~  192 (246)
                      ...+..++.
T Consensus       287 ~~~l~~l~~  295 (861)
T d2bpta1         287 VEFWSTICE  295 (861)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877764

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.61  E-value=0.0055  Score=47.23  Aligned_cols=145  Identities=16%  Similarity=0.106  Sum_probs=81.1

Q ss_pred             cHHHHHHHHhcCCChHHHHHHHHHH-----HHhhCC--chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHH-----HH
Q 025930           72 GIGLLSTTAANAEDPQTLRMVAGAI-----ANLCGN--DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGI-----AN  139 (246)
Q Consensus        72 ~i~~L~~ll~~~~~~~~~~~a~~aL-----~~L~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L-----~n  139 (246)
                      .+..|..++++ +|+.++..++..|     ..|..+  .+.+..+...-..+.|..++.++++.++..++..+     ..
T Consensus        67 ~~~~L~~Ll~D-~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~  145 (233)
T d1lrva_          67 PVEALTPLIRD-SDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFR  145 (233)
T ss_dssp             CGGGGGGGTTC-SSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGG
T ss_pred             CHHHHHHHhcC-CCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHH
Confidence            34455555555 4566666665432     222222  22333333333456677778888888887776532     11


Q ss_pred             hhcccccccccCChhhhHHHHhCCChHHHHHcccCCChhHHHHHHHHH-----HHhcc--CchhHHHHHhCCcHHHHHHH
Q 025930          140 FAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEASPIRRHIELAL-----CHLAQ--HEVNAKDMISGGALWELVRI  212 (246)
Q Consensus       140 L~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~~v~~~a~~aL-----~~La~--~~~~~~~i~~~g~i~~L~~l  212 (246)
                      +..       ..+.+.|..+...-..+.|..++++.++.+|..++..|     ..|..  +...|....+. ..+.++..
T Consensus       146 L~~-------D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~  217 (233)
T d1lrva_         146 FMR-------DEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRE  217 (233)
T ss_dssp             TTT-------CSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHH
T ss_pred             Hhc-------CCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHH
Confidence            111       13466777776666678888888888888888887653     23333  23345555543 23445566


Q ss_pred             HhcCCHHHHHHHHH
Q 025930          213 SRDCSREDIRTLAH  226 (246)
Q Consensus       213 l~~~~~~~~~~~A~  226 (246)
                      +. .++..++..|.
T Consensus       218 L~-D~d~~VR~aA~  230 (233)
T d1lrva_         218 LD-EPDPEVRLAIA  230 (233)
T ss_dssp             CC-CCCHHHHHHHH
T ss_pred             hC-CCCHHHHHHHH
Confidence            65 44455565554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.83  E-value=0.14  Score=41.25  Aligned_cols=185  Identities=12%  Similarity=0.111  Sum_probs=101.9

Q ss_pred             HhHhhccccccHHHHHH----hCC---HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCcHHHHHHHHhc
Q 025930           11 VKSEDIRAQSNQEKIVE----AGG---LTSLLMLLGSSEDETIHRVAAGAIANLAMNE-TNQELIMTQGGIGLLSTTAAN   82 (246)
Q Consensus        11 ~~~~~~~~~~~~~~i~~----~g~---i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~-~~~~~i~~~g~i~~L~~ll~~   82 (246)
                      +..++...++.|..+.|    .|-   +..+.+++.++. .. ...|...+..++... ...+.      +..+..++.+
T Consensus        63 v~~~~~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~-ls-~~ea~~~l~~l~~~~~Pt~~~------l~~~~~l~~~  134 (336)
T d1lsha1          63 IWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQ-LT-SAEATQIVASTLSNQQATRES------LSYARELLNT  134 (336)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SC-HHHHHHHHHHHHHTCCCCHHH------HHHHHHHHTC
T ss_pred             HHHHHhcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCC-CC-HHHHHHHHHHHhccCCCCHHH------HHHHHHHHcC
Confidence            34444455566666554    343   666788887753 22 234556666665442 23332      3334444443


Q ss_pred             ---CCChHHHHHHHHHHHHhh-----CCchhHHHHHhcCCHHHHHH----HhcCCCHHHHHHHHHHHHHhhccccccccc
Q 025930           83 ---AEDPQTLRMVAGAIANLC-----GNDKLQLKLRGEGGIKALLG----MVRCGHPDVLAQVARGIANFAKCESRASTQ  150 (246)
Q Consensus        83 ---~~~~~~~~~a~~aL~~L~-----~~~~~~~~l~~~g~i~~L~~----ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~  150 (246)
                         ..++.+...+.-++.+|.     .++.+...     .++.+..    ....++.+-+..++.+|+|+..        
T Consensus       135 ~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------  201 (336)
T d1lsha1         135 SFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------  201 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------
Confidence               135777777777777665     22222111     2333333    3446677777788999999872        


Q ss_pred             CChhhhHHHHhCCChHHHHHcccCC-------ChhHHHHHHHHHHHhccCchhHHHHHhCCcHHHHHHHHhc-CCHHHHH
Q 025930          151 GTKTGRSLLIDDGALPWIVQNSNNE-------ASPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRD-CSREDIR  222 (246)
Q Consensus       151 ~~~~~~~~l~~~g~i~~Lv~ll~~~-------~~~v~~~a~~aL~~La~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~  222 (246)
                                 .+.++.+..++...       ...+|..|.++|.+++......       ..+.+..+..+ ..+.++|
T Consensus       202 -----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e~~EvR  263 (336)
T d1lsha1         202 -----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELR  263 (336)
T ss_dssp             -----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHH
T ss_pred             -----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCCChHHH
Confidence                       14577777777432       4679999999999987642211       22334444433 3344455


Q ss_pred             HHHHHHH-ccChh
Q 025930          223 TLAHRTL-TSSPA  234 (246)
Q Consensus       223 ~~A~~~L-~~~~~  234 (246)
                      -+|...| .+.|.
T Consensus       264 iaA~~~lm~t~P~  276 (336)
T d1lsha1         264 IRSCIVFFESKPS  276 (336)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHHhcCCC
Confidence            5555444 33443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.26  Score=43.30  Aligned_cols=196  Identities=11%  Similarity=0.070  Sum_probs=104.2

Q ss_pred             CHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhhCC--ch
Q 025930           30 GLTSLLMLLGSSEDETIHRVAAGAIANLAMN--ETNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLCGN--DK  104 (246)
Q Consensus        30 ~i~~Li~ll~~~~~~~~~~~a~~~L~~la~~--~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~~~--~~  104 (246)
                      .+|.++..+++..++.++..|+..++.++..  +..+..+  ...++.+++.+++.. +..++..++.++..++..  +.
T Consensus       650 ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~  727 (876)
T d1qgra_         650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC--DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE  727 (876)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhH--HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHh
Confidence            4677888887776777888888888887654  2222222  235677888887532 466778888898887622  22


Q ss_pred             hHHHHHhcCCHHHHHHHhcC----CCHH-------HHHHHHHHHHHhhc-c-cccccccCChhhhHHHHhCCChHHHHHc
Q 025930          105 LQLKLRGEGGIKALLGMVRC----GHPD-------VLAQVARGIANFAK-C-ESRASTQGTKTGRSLLIDDGALPWIVQN  171 (246)
Q Consensus       105 ~~~~l~~~g~i~~L~~ll~~----~~~~-------~~~~a~~~L~nL~~-~-~~~~~~~~~~~~~~~l~~~g~i~~Lv~l  171 (246)
                      ....+-  -.++.+...+..    ++.+       ++..++.++..+.. . .+..   ........+  ...++.++++
T Consensus       728 ~~~yl~--~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~--~~~~~~i~~~  800 (876)
T d1qgra_         728 FKKYLE--VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQE---NVHPDVMLV--QPRVEFILSF  800 (876)
T ss_dssp             GGGGHH--HHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS---SCCGGGGGS--GGGHHHHHHH
T ss_pred             hHHHHH--HHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccc---cchhhHHHH--HHHHHHHHHH
Confidence            211110  123333333331    2222       23344433333211 0 0000   000000001  1123333332


Q ss_pred             c------cCCChhHHHHHHHHHHHhcc--CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHccChh
Q 025930          172 S------NNEASPIRRHIELALCHLAQ--HEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLTSSPA  234 (246)
Q Consensus       172 l------~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  234 (246)
                      +      ...+..++..++.+|+.|+.  ..+..+.+.....+..++.-...+.++..|..|.++.....+
T Consensus       801 i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~  871 (876)
T d1qgra_         801 IDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK  871 (876)
T ss_dssp             HHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            2      23467889999999999976  444445555556666665554446677788888877654433

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.62  Score=37.27  Aligned_cols=152  Identities=11%  Similarity=0.104  Sum_probs=97.0

Q ss_pred             hcCcHHHHHHHHhc----C------CChHHHHHHHHHHHHhhCCchhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025930           69 TQGGIGLLSTTAAN----A------EDPQTLRMVAGAIANLCGNDKLQLKLR-GEGGIKALLGMVRCGHPDVLAQVARGI  137 (246)
Q Consensus        69 ~~g~i~~L~~ll~~----~------~~~~~~~~a~~aL~~L~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~a~~~L  137 (246)
                      ..+|+..|+.+|..    .      .|....-.+..+|+.+.++......++ ..+++..++..+.++.+.++..|..+|
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL  122 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  122 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence            45688878777632    1      134456678899999998887777766 567899999999999999999999999


Q ss_pred             HHhhccccccc----ccCChhhhHHHHhCCChHHHHHcccCC-ChhHHHHHHHHHHHhccCch---h----HHHHHhCCc
Q 025930          138 ANFAKCESRAS----TQGTKTGRSLLIDDGALPWIVQNSNNE-ASPIRRHIELALCHLAQHEV---N----AKDMISGGA  205 (246)
Q Consensus       138 ~nL~~~~~~~~----~~~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~v~~~a~~aL~~La~~~~---~----~~~i~~~g~  205 (246)
                      ..+|..+..+.    +-..-+......+.+-+.+++..++.+ +.+.+..++..+-.+..+++   .    |..+..+|.
T Consensus       123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl  202 (343)
T d2bnxa1         123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  202 (343)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCCh
Confidence            99986421000    000011223344556688888888765 45666666666655654332   2    455556766


Q ss_pred             HHHHHHHHhcCCHHHH
Q 025930          206 LWELVRISRDCSREDI  221 (246)
Q Consensus       206 i~~L~~ll~~~~~~~~  221 (246)
                      .+ ++.-++..+.+.+
T Consensus       203 ~~-il~~l~~~~~~~L  217 (343)
T d2bnxa1         203 HQ-VLQELREIENEDM  217 (343)
T ss_dssp             HH-HHHHHTTCCCHHH
T ss_pred             HH-HHHHHHccCChHH
Confidence            55 4555554444433

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.73  E-value=0.34  Score=43.36  Aligned_cols=136  Identities=12%  Similarity=0.029  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCC-ChHHHHHHHHHHHHhh---CC----
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAE-DPQTLRMVAGAIANLC---GN----  102 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~aL~~L~---~~----  102 (246)
                      ++.+.++|..+-+|..++.|=..|..+..++         |....|+.++.+.+ +..++..|+-.|+|..   ..    
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~   74 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG   74 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            4567777766667777888888888887776         56777788777544 5678888888888876   11    


Q ss_pred             -----chhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccCCCh
Q 025930          103 -----DKLQLKLRGEGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNNEAS  177 (246)
Q Consensus       103 -----~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~~~~  177 (246)
                           ++.|..+ +    ..++..+.+++..++...+.++..++..+      ..++      ..+.+|.+++.+.++++
T Consensus        75 ~~~i~~e~k~~I-k----~~ll~~l~~~~~~ir~~l~~~i~~I~~~d------~p~~------Wp~ll~~l~~~l~s~~~  137 (959)
T d1wa5c_          75 NHLLPANNVELI-K----KEIVPLMISLPNNLQVQIGEAISSIADSD------FPDR------WPTLLSDLASRLSNDDM  137 (959)
T ss_dssp             CBSSCHHHHHHH-H----HHHHHHHHHSCHHHHHHHHHHHHHHHHHH------STTT------CTTHHHHHHTTCCSSCT
T ss_pred             cCCCCHHHHHHH-H----HHHHHHHhCCcHHHHHHHHHHHHHHHHHh------Cccc------cHHHHHHHHHHhCCCCH
Confidence                 1222222 2    23445555677888888888888888532      1111      34679999999999999


Q ss_pred             hHHHHHHHHHHHhcc
Q 025930          178 PIRRHIELALCHLAQ  192 (246)
Q Consensus       178 ~v~~~a~~aL~~La~  192 (246)
                      ..+..++.+|..++.
T Consensus       138 ~~~~~~L~~l~~i~k  152 (959)
T d1wa5c_         138 VTNKGVLTVAHSIFK  152 (959)
T ss_dssp             THHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.62  Score=40.79  Aligned_cols=185  Identities=11%  Similarity=0.064  Sum_probs=105.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-c-chHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhhCCch-hH-
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMN-E-TNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLCGNDK-LQ-  106 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~-~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~-  106 (246)
                      ++.+...++++ ++.++..++.++..+... + .....+. ....+.+.....+ .++.+...+...+..++.... .. 
T Consensus       219 ~~~l~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~  295 (876)
T d1qgra_         219 MQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAI  295 (876)
T ss_dssp             HHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666664 788888999999988654 2 2233222 2233444455555 567777777777766652110 00 


Q ss_pred             -------------------HHHHhcCCHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcccccccccCChhhhHHHH
Q 025930          107 -------------------LKLRGEGGIKALLGMVRC-------GHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLI  160 (246)
Q Consensus       107 -------------------~~l~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~  160 (246)
                                         ........++.+...+..       ++..++..+..++..++..           ....+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~-----------~~~~~~  364 (876)
T d1qgra_         296 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-----------CEDDIV  364 (876)
T ss_dssp             HHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-----------HGGGGH
T ss_pred             HhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHH-----------hhhhhh
Confidence                               001111223344444432       1233667777777766632           111111


Q ss_pred             hCCChHHHHHcccCCChhHHHHHHHHHHHhccCchhH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 025930          161 DDGALPWIVQNSNNEASPIRRHIELALCHLAQHEVNA-KDMISGGALWELVRISRDCSREDIRTLAHRTLTS  231 (246)
Q Consensus       161 ~~g~i~~Lv~ll~~~~~~v~~~a~~aL~~La~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  231 (246)
                       ...++.+.+.+.+.+...++.++.++..+....... ..-.-...++.+...+.+ ++..++..|.+++..
T Consensus       365 -~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d-~~~~vr~~a~~~l~~  434 (876)
T d1qgra_         365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGR  434 (876)
T ss_dssp             -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHH
Confidence             124566677778888999999999999887633221 111123467778888874 456677888877753

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.53  E-value=2  Score=34.15  Aligned_cols=153  Identities=18%  Similarity=0.173  Sum_probs=99.0

Q ss_pred             HhCCHHHHHHHhcC---------C-CCHHHHHHHHHHHHHhcCCcchHHHHHh-cCcHHHHHHHHhcCCChHHHHHHHHH
Q 025930           27 EAGGLTSLLMLLGS---------S-EDETIHRVAAGAIANLAMNETNQELIMT-QGGIGLLSTTAANAEDPQTLRMVAGA   95 (246)
Q Consensus        27 ~~g~i~~Li~ll~~---------~-~~~~~~~~a~~~L~~la~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~a   95 (246)
                      +.+|+..|+.+|..         + .|...+..+..+|..+.........+.+ .+++..+...+.+ ++..++..|...
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s-~~~~tr~~a~el  121 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKL  121 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT-TSHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCC-CchHHHHHHHHH
Confidence            46677788877631         1 1344566789999999888777766665 5667777777766 578899999999


Q ss_pred             HHHhhCC---chhHHHH----------HhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhhcc-cccccccCChhhhHHHH
Q 025930           96 IANLCGN---DKLQLKL----------RGEGGIKALLGMVRCG-HPDVLAQVARGIANFAKC-ESRASTQGTKTGRSLLI  160 (246)
Q Consensus        96 L~~L~~~---~~~~~~l----------~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~-~~~~~~~~~~~~~~~l~  160 (246)
                      |..+|..   +.+...+          -+.+-..+++..++++ +.+.+..++..+-.+..+ ++...   .-..|..+.
T Consensus       122 L~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~---R~~lR~E~~  198 (343)
T d2bnxa1         122 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---RVHIRSELM  198 (343)
T ss_dssp             HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH---HHHHHHHHH
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH---HHHHHHHHH
Confidence            9999832   2233322          2334567778877754 567777766666666643 21111   145577777


Q ss_pred             hCCChHHHHHcccCCChhHHHHH
Q 025930          161 DDGALPWIVQNSNNEASPIRRHI  183 (246)
Q Consensus       161 ~~g~i~~Lv~ll~~~~~~v~~~a  183 (246)
                      ..|..+.+-.+=..+++.+....
T Consensus       199 ~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         199 RLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             HTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             HCChHHHHHHHHccCChHHHHHH
Confidence            88877766666555566655544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=2.2  Score=33.55  Aligned_cols=152  Identities=8%  Similarity=-0.028  Sum_probs=114.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhcCCChHHHHHHHHHHHHhh-CCchhHHHH
Q 025930           31 LTSLLMLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAANAEDPQTLRMVAGAIANLC-GNDKLQLKL  109 (246)
Q Consensus        31 i~~Li~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~~~~~~l  109 (246)
                      +..|+.--   +++.+-..+-.+|..+..++...+.+.+...+..+++.+.. ++-++...|...+..+- .++......
T Consensus       118 l~~L~~gy---e~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~hk~~~aef  193 (330)
T d1upka_         118 LFMLLKGY---ESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEF  193 (330)
T ss_dssp             HHHHHHGG---GSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred             HHHHHhhc---CCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            44444443   34455566788999999999999999998889889888877 57888888999988886 455555554


Q ss_pred             HhcC---CHHHHHHHhcCCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHh----CCChHHHHHcccCCChhHHHH
Q 025930          110 RGEG---GIKALLGMVRCGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLID----DGALPWIVQNSNNEASPIRRH  182 (246)
Q Consensus       110 ~~~g---~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~----~g~i~~Lv~ll~~~~~~v~~~  182 (246)
                      ...+   .+...-.+|.+++--.+..++..|+.+-..         +.+...|..    ..-+..++.+|++.+..++..
T Consensus       194 l~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLld---------r~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~E  264 (330)
T d1upka_         194 LEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLD---------RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFE  264 (330)
T ss_dssp             HHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHS---------GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---------hhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHH
Confidence            4433   355567788899999999999999998742         455555443    234788999999999999999


Q ss_pred             HHHHHHHhccCch
Q 025930          183 IELALCHLAQHEV  195 (246)
Q Consensus       183 a~~aL~~La~~~~  195 (246)
                      |-.++--...+|.
T Consensus       265 AFhVFKvFVANpn  277 (330)
T d1upka_         265 AFHVFKVFVANPN  277 (330)
T ss_dssp             HHHHHHHHHHCSS
T ss_pred             hhhHhhhhhcCCC
Confidence            9988877766554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.41  E-value=0.74  Score=36.67  Aligned_cols=120  Identities=8%  Similarity=-0.000  Sum_probs=74.5

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCCcchHHHHHhcCcHHHHHHHHhc------CCChHHHHHHHHHHHHhhCC-chhHHH
Q 025930           36 MLLGSSEDETIHRVAAGAIANLAMNETNQELIMTQGGIGLLSTTAAN------AEDPQTLRMVAGAIANLCGN-DKLQLK  108 (246)
Q Consensus        36 ~ll~~~~~~~~~~~a~~~L~~la~~~~~~~~i~~~g~i~~L~~ll~~------~~~~~~~~~a~~aL~~L~~~-~~~~~~  108 (246)
                      +..+.+ +......+..+|+|+....          .++.|..++..      ..+..++..|.+||+++... +..   
T Consensus       179 ~~~~~~-~~~~~~~~LkaLGN~g~p~----------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~---  244 (336)
T d1lsha1         179 QSSDRA-KEEEIVLALKALGNAGQPN----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---  244 (336)
T ss_dssp             HHHHTT-CHHHHHHHHHHHHHHTCGG----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---
T ss_pred             Hhhccc-chHHHHHHHHHHhccCCHh----------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH---
Confidence            344444 5444555788999987433          45566555542      12467888899999988743 321   


Q ss_pred             HHhcCCHHHHHHHhc--CCCHHHHHHHHHHHHHhhcccccccccCChhhhHHHHhCCChHHHHHcccC-CChhHHHHHHH
Q 025930          109 LRGEGGIKALLGMVR--CGHPDVLAQVARGIANFAKCESRASTQGTKTGRSLLIDDGALPWIVQNSNN-EASPIRRHIEL  185 (246)
Q Consensus       109 l~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~v~~~a~~  185 (246)
                           +-+.+..++.  ..+++++..|...|...-           |.       ...+..+...++. .+.+|......
T Consensus       245 -----v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~-----------P~-------~~~l~~i~~~l~~E~~~QV~sfv~S  301 (336)
T d1lsha1         245 -----VQEIVLPIFLNVAIKSELRIRSCIVFFESK-----------PS-------VALVSMVAVRLRREPNLQVASFVYS  301 (336)
T ss_dssp             -----HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC-----------CC-------HHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             -----HHHHHHHHHcCCCCChHHHHHHHHHHHhcC-----------CC-------HHHHHHHHHHHHhCcHHHHHHHHHH
Confidence                 1234445544  456888888887776531           11       1346667676644 47888888888


Q ss_pred             HHHHhcc
Q 025930          186 ALCHLAQ  192 (246)
Q Consensus       186 aL~~La~  192 (246)
                      .|.+++.
T Consensus       302 ~l~~la~  308 (336)
T d1lsha1         302 QMRSLSR  308 (336)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            8988876