Citrus Sinensis ID: 025931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNKTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTEPAQGLVL
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEcccHHHHHHHHcccEEcccEEEEEcccccccccccccccccccccccccHHHHcHHHHHHHHHHHcHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEccHHHHHHHHHHcccEEcccEEEEEccccccccccHcHccccccccccccHHHccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVsislapdyqlppaasalhetknktpngaeSALRKAEDVVSSMLAKGFilgkdavfkaktfdekhqftstasaKVASFdkkigfsekisvgtsvvsDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVhlaespktsspsghqpsktepaqglvl
Flexible Loop (DISEMBL)
MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNKTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDekhqftstasakvasfdkkigfsekisvgtsvvsdrvrEVDQkfqvsektksafvaaeqkvssvgsaiMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAespktsspsghqpsktepaqglvl
Low Complexity Region (SEG)
MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNKTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVgqkakekagmaeeeqkRKMVDDFAQVHLAESPKTSSPSGHQPSKTEPAQGLVL
Disordered region (IsUnstruct)
******WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY*****************************VVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSD******************FVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQ**********************************************************
Disordered Region (DISOPRED)
************VTFKDMQGAETAVLLSGATIVDLSVSISLAPDY****************************DVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQ******************************************************GLV*
Disordered Region (DISEMBL)
MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNKTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAA*******************RKMVDDFAQVHLA************************
Disordered Region (DISPRO)
******WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLP********************LRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEE***************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNKTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTEPAQGLVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
118485672	280	unknown [Populus trichocarpa]	0.995	0.875	0.817	1e-108
255575283	275	nucleic acid binding protein, putative [	0.979	0.876	0.796	1e-107
224138192	267	predicted protein [Populus trichocarpa]	0.934	0.861	0.827	1e-102
225427136	282	PREDICTED: protein vip1 [Vitis vinifera]	1.0	0.872	0.75	2e-97
356496275	279	PREDICTED: uncharacterized protein LOC10	0.995	0.878	0.731	1e-94
255637225	279	unknown [Glycine max]	0.995	0.878	0.731	3e-94
356531441	280	PREDICTED: uncharacterized protein LOC10	0.995	0.875	0.732	2e-93
255645299	280	unknown [Glycine max]	0.995	0.875	0.732	5e-93
224071379	276	predicted protein [Populus trichocarpa]	0.967	0.862	0.743	8e-93
357516947	279	hypothetical protein MTR_8g066460 [Medic	0.995	0.878	0.723	9e-93

>gi|118485672|gb|ABK94686.1| unknown [Populus trichocarpa]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/247 (81%), Positives = 217/247 (87%), Gaps = 2/247 (0%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASA-LHETKN 59
           MKSDNE +QIAYVTFKD QGA+TAVLLSGATIVDLSV+++L PDYQLPPAA A L  T N
Sbjct: 35  MKSDNERSQIAYVTFKDSQGADTAVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGN 94

Query: 60  KTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIG 119
           K P G ESALRKAEDVVS MLAKGFILGKDA+ KAK FDEKHQ TSTASAKV SFDKKIG
Sbjct: 95  KAP-GDESALRKAEDVVSGMLAKGFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIG 153

Query: 120 FSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWV 179
            +EKIS GT+VV D+VREVDQKFQVSEKTKSAF  AEQKVSS GSAIM NRYVFTGA+WV
Sbjct: 154 LTEKISAGTTVVGDKVREVDQKFQVSEKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWV 213

Query: 180 AGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTE 239
            GAFNKVA+AAG+VGQKAKEKAGMAEEEQKRKMVDDFAQVHL+ESPK SS S  +PSK  
Sbjct: 214 TGAFNKVAKAAGDVGQKAKEKAGMAEEEQKRKMVDDFAQVHLSESPKASSASDQKPSKPP 273

Query: 240 PAQGLVL 246
           PAQGL+L
Sbjct: 274 PAQGLIL 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575283|ref|XP_002528545.1| nucleic acid binding protein, putative [Ricinus communis] gi|223532047|gb|EEF33857.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/246 (79%), Positives = 215/246 (87%), Gaps = 5/246 (2%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
           ++ D+E +QIAYVT+KD QGAETAVLLSGATIVDLSVSI+L PDYQLPPA      T+NK
Sbjct: 35  VRRDDEKSQIAYVTYKDSQGAETAVLLSGATIVDLSVSITLDPDYQLPPAV-----TQNK 89

Query: 61  TPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGF 120
           TP GAESALRKAEDVV+SMLAKGFILGKDAV KAKTFD+KHQ TSTASAKV S DKKIG 
Sbjct: 90  TPGGAESALRKAEDVVTSMLAKGFILGKDAVNKAKTFDDKHQLTSTASAKVVSLDKKIGL 149

Query: 121 SEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVA 180
           ++KIS GT++VSD+VREVDQKFQVSEKTK+AF AAEQKVSS G AIMKNRYVFTGASWV 
Sbjct: 150 TDKISAGTTIVSDKVREVDQKFQVSEKTKTAFAAAEQKVSSAGVAIMKNRYVFTGASWVT 209

Query: 181 GAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTEP 240
           GAFNKVA+AAGEVGQKAKEK GMAE+EQKRKMVDDFAQVHL+ESPK SS   H P K  P
Sbjct: 210 GAFNKVAKAAGEVGQKAKEKVGMAEDEQKRKMVDDFAQVHLSESPKASSEGEHLPFKPAP 269

Query: 241 AQGLVL 246
            QGL+L
Sbjct: 270 VQGLIL 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138192|ref|XP_002326541.1| predicted protein [Populus trichocarpa] gi|222833863|gb|EEE72340.1| predicted protein [Populus trichocarpa]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/232 (82%), Positives = 205/232 (88%), Gaps = 2/232 (0%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASA-LHETKN 59
           MKSDNE +QIAYVTFKD QGA+TAVLLSGATIVDLSV+++L PDYQLPPAA A L  T N
Sbjct: 35  MKSDNERSQIAYVTFKDSQGADTAVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGN 94

Query: 60  KTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIG 119
           K P G ESALRKAEDVVS MLAKGFILGKDA+ KAK FDEKHQ TSTASAKV SFDKKIG
Sbjct: 95  KAP-GDESALRKAEDVVSGMLAKGFILGKDAINKAKGFDEKHQLTSTASAKVVSFDKKIG 153

Query: 120 FSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWV 179
            +EKIS GT+VV D+VREVDQKFQVSEKTKSAF  AEQKVSS GSAIM NRYVFTGA+WV
Sbjct: 154 LTEKISAGTTVVGDKVREVDQKFQVSEKTKSAFAVAEQKVSSAGSAIMSNRYVFTGAAWV 213

Query: 180 AGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPS 231
            GAFNKVA+AAG+VGQKAKEKAGMAEEEQKRKMVDDFAQVHL+ESPK S  S
Sbjct: 214 TGAFNKVAKAAGDVGQKAKEKAGMAEEEQKRKMVDDFAQVHLSESPKASGAS 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427136|ref|XP_002278543.1| PREDICTED: protein vip1 [Vitis vinifera] gi|297742057|emb|CBI33844.3| unnamed protein product [Vitis vinifera]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/248 (75%), Positives = 215/248 (86%), Gaps = 2/248 (0%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHET--K 58
           M+SDNE +QIAYVTFKDMQGAETA+LLSGATIVD+SV+I+ APDYQLPPAA++      +
Sbjct: 35  MQSDNERSQIAYVTFKDMQGAETAILLSGATIVDMSVTITPAPDYQLPPAAASAPPLPKE 94

Query: 59  NKTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKI 118
           NKTP  AESA RK EDVVS MLAKG+ILGKDAV KAK+FDEKHQ TSTA++KV SFDKKI
Sbjct: 95  NKTPGRAESAFRKTEDVVSGMLAKGYILGKDAVNKAKSFDEKHQLTSTATSKVVSFDKKI 154

Query: 119 GFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASW 178
           GF+EKIS GTSVV+++VREVD KFQVS+KTKSAF AAEQKVSS GSAIMKNRYVFTGASW
Sbjct: 155 GFTEKISAGTSVVNEKVREVDHKFQVSDKTKSAFAAAEQKVSSAGSAIMKNRYVFTGASW 214

Query: 179 VAGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKT 238
           V GAFNKVA+AA EVGQKAKEK G +E+EQKR++V+DFAQVHL++SPK S+ +   P K 
Sbjct: 215 VTGAFNKVAKAAEEVGQKAKEKVGKSEDEQKRRVVEDFAQVHLSDSPKASASNEQHPYKP 274

Query: 239 EPAQGLVL 246
            P QGL+L
Sbjct: 275 APPQGLIL 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496275|ref|XP_003516994.1| PREDICTED: uncharacterized protein LOC100809613 [Glycine max]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/246 (73%), Positives = 206/246 (83%), Gaps = 1/246 (0%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
           ++S +E +QIAY+TFKD QGAETA+LLSGATIVD+ V+I+  PDYQLPPAA A    + +
Sbjct: 35  LRSHDERSQIAYITFKDSQGAETALLLSGATIVDMPVTITQDPDYQLPPAALASSVRETQ 94

Query: 61  TPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGF 120
           TP GA+SALRKAEDVVS MLAKGFILGKDAV KAKTFDEKHQ +STASAKVASFD+KIG 
Sbjct: 95  TPGGADSALRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQKIGL 154

Query: 121 SEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVA 180
           SEKIS G +VVSDRVREVDQKFQVSEKTKSAF AAEQ VS+ GSA+MKNRYV TGASWV 
Sbjct: 155 SEKISAGATVVSDRVREVDQKFQVSEKTKSAFAAAEQTVSNAGSALMKNRYVLTGASWVT 214

Query: 181 GAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTEP 240
           GAF+KV++AAGEVGQK KEK   AEE QKRK+ D +AQV L+ESPK +  S  + SK  P
Sbjct: 215 GAFSKVSKAAGEVGQKTKEKVEGAEEHQKRKVEDQYAQV-LSESPKAAEASEQKSSKPAP 273

Query: 241 AQGLVL 246
           AQGL+L
Sbjct: 274 AQGLIL 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637225|gb|ACU18943.1| unknown [Glycine max]

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/246 (73%), Positives = 205/246 (83%), Gaps = 1/246 (0%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
           ++S +E +QIAY+TFKD QGAETA+LLSGATIVD+ V+I+  PDYQLPPAA A    + +
Sbjct: 35  LRSHDERSQIAYITFKDSQGAETALLLSGATIVDMPVTITRDPDYQLPPAALASSVRETQ 94

Query: 61  TPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGF 120
           TP GA+SALRKAEDVVS MLAKGFILGKDAV KAKTFDEKHQ +STASAKVASFD+KIG 
Sbjct: 95  TPGGADSALRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQKIGL 154

Query: 121 SEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVA 180
           SEKIS G +VVSDRVREVDQKFQVSEKTKSAF AAEQ VS+ GSA+MKNRYV TGASWV 
Sbjct: 155 SEKISAGATVVSDRVREVDQKFQVSEKTKSAFAAAEQTVSNAGSALMKNRYVLTGASWVT 214

Query: 181 GAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTEP 240
           GAF+KV +AAGEVGQK KEK   AEE QKRK+ D +AQV L+ESPK +  S  + SK  P
Sbjct: 215 GAFSKVFKAAGEVGQKTKEKVEGAEEHQKRKVEDQYAQV-LSESPKAAEASEQKSSKPAP 273

Query: 241 AQGLVL 246
           AQGL+L
Sbjct: 274 AQGLIL 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531441|ref|XP_003534286.1| PREDICTED: uncharacterized protein LOC100797009 [Glycine max]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/247 (73%), Positives = 206/247 (83%), Gaps = 2/247 (0%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
           ++S +E +QIA++TFKD QGAETAVLLSGATIVD+ V+ISL PDYQLPPAA A    + +
Sbjct: 35  LQSHDERSQIAFITFKDSQGAETAVLLSGATIVDMPVTISLDPDYQLPPAALASPVRETR 94

Query: 61  TPNG-AESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIG 119
           TP G A+SA RKAEDVVS MLAKGFILGKDAV KAKTFDEKHQ +STASAKVASFD+KIG
Sbjct: 95  TPGGGADSAFRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQKIG 154

Query: 120 FSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWV 179
            SEKIS G +VV DRVREVDQKFQVSEKTKSAF AAEQ VS+ GSAIMKNRYV TGASWV
Sbjct: 155 LSEKISAGATVVGDRVREVDQKFQVSEKTKSAFAAAEQTVSNAGSAIMKNRYVLTGASWV 214

Query: 180 AGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTE 239
            GAF+KV++AAGEVGQK KEK   AEE+QKRK+ D +AQV L+ESPK +  S  + SK  
Sbjct: 215 TGAFSKVSKAAGEVGQKTKEKVESAEEQQKRKVEDQYAQV-LSESPKAAEASEQKSSKPA 273

Query: 240 PAQGLVL 246
           PAQGL+L
Sbjct: 274 PAQGLIL 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645299|gb|ACU23146.1| unknown [Glycine max]

 Score =  346 bits (887), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 181/247 (73%), Positives = 205/247 (82%), Gaps = 2/247 (0%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
           ++S +E +QIA++TFKD QGAETAVLLSGATIVD+ V+ISL PDYQLPPAA A    + +
Sbjct: 35  LQSHDERSQIAFITFKDSQGAETAVLLSGATIVDMPVTISLDPDYQLPPAALASPVRETR 94

Query: 61  TPNG-AESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIG 119
           TP G A+SA RKAEDVVS MLAKGFILGKDAV KAKTFDEKHQ +STASAKVASFD+KIG
Sbjct: 95  TPGGGADSAFRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQKIG 154

Query: 120 FSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWV 179
            SEKIS G +VV DRVREVDQKFQVSEKTKSAF AAEQ VS+ GSAIMKNRYV TGASWV
Sbjct: 155 LSEKISAGATVVGDRVREVDQKFQVSEKTKSAFAAAEQTVSNAGSAIMKNRYVLTGASWV 214

Query: 180 AGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTE 239
            GAF+KV +AAGEVGQK KEK   AEE+QKRK+ D +AQV L+ESPK +  S  + SK  
Sbjct: 215 TGAFSKVFKAAGEVGQKTKEKVESAEEQQKRKVEDQYAQV-LSESPKAAEASEQKSSKPA 273

Query: 240 PAQGLVL 246
           PAQGL+L
Sbjct: 274 PAQGLIL 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071379|ref|XP_002303431.1| predicted protein [Populus trichocarpa] gi|222840863|gb|EEE78410.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 183/246 (74%), Positives = 204/246 (82%), Gaps = 8/246 (3%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
           MKS+NE +QIAYV+FKD QGA+TAVLLSGATIVDL V+++L PDYQLPPAA A   T+NK
Sbjct: 39  MKSENEQSQIAYVSFKDSQGADTAVLLSGATIVDLPVTVTLDPDYQLPPAALAALATENK 98

Query: 61  TPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGF 120
            P+  ESAL KAEDVV+ MLAKGFILGKDA+ KAK+FDEKHQ TSTASAKVAS DKKIG 
Sbjct: 99  APSD-ESALHKAEDVVTGMLAKGFILGKDAINKAKSFDEKHQLTSTASAKVASLDKKIGL 157

Query: 121 SEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVA 180
           +EKIS  T+VV D+VREVDQKFQVSEKTK A  AAEQKVSS GSAIM NRYVFTGA+WV 
Sbjct: 158 TEKISASTTVVGDKVREVDQKFQVSEKTKLALAAAEQKVSSAGSAIMSNRYVFTGAAWVT 217

Query: 181 GAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTEP 240
           G FNKVA+A       AKEK GM+EEEQKRKMVDD+AQVHL+ESPK S  S  QPSK  P
Sbjct: 218 GTFNKVAKA-------AKEKVGMSEEEQKRKMVDDYAQVHLSESPKASGESEQQPSKPPP 270

Query: 241 AQGLVL 246
           AQGL+L
Sbjct: 271 AQGLIL 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516947|ref|XP_003628762.1| hypothetical protein MTR_8g066460 [Medicago truncatula] gi|355522784|gb|AET03238.1| hypothetical protein MTR_8g066460 [Medicago truncatula]

 Score =  345 bits (885), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 178/246 (72%), Positives = 205/246 (83%), Gaps = 1/246 (0%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
           M+S +E +QIA+VTFKD QGAETAVLLSGATIVDLSV I+L PDY+LPPAA A   ++ K
Sbjct: 35  MQSYDERSQIAFVTFKDPQGAETAVLLSGATIVDLSVKITLDPDYKLPPAALASSASEGK 94

Query: 61  TPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGF 120
           TP GA+SALRKAEDVV+SMLAKGFILGKDAV KAK FDEKHQ +STASAKV SFD+K+G 
Sbjct: 95  TPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHQLSSTASAKVTSFDQKLGL 154

Query: 121 SEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVA 180
           SEK++ G SVVS RV+EVDQKFQVSEKTKSAF AAEQKVS+ GSAIMKNRY+ TG +WV 
Sbjct: 155 SEKLTAGASVVSGRVKEVDQKFQVSEKTKSAFAAAEQKVSTAGSAIMKNRYILTGTTWVT 214

Query: 181 GAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTEP 240
           GAFNKVA+AAG+VGQK KEK   AE EQ RK+ D +AQV L+ESPK ++ S    SK  P
Sbjct: 215 GAFNKVAKAAGDVGQKTKEKVENAEVEQNRKVEDQYAQV-LSESPKAAATSELHSSKPAP 273

Query: 241 AQGLVL 246
           AQGL+L
Sbjct: 274 AQGLIL 279

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2129401	313	AT4G17720 [Arabidopsis thalian	0.926	0.728	0.691	1.7e-78
TAIR|locus:2172947	295	AT5G46870 [Arabidopsis thalian	0.955	0.796	0.598	3.5e-68
TAIR|locus:2148970	260	BPA1 "binding partner of acd11	0.756	0.715	0.678	1.5e-60
TAIR|locus:2200211	279	AT1G67950 [Arabidopsis thalian	0.768	0.677	0.520	2e-47
TAIR|locus:2145806	267	AT5G32450 [Arabidopsis thalian	0.752	0.692	0.507	5.9e-41
TAIR|locus:2012567	244	AT1G14340 [Arabidopsis thalian	0.727	0.733	0.371	5.7e-27
TAIR|locus:2102067	249	AT3G01210 [Arabidopsis thalian	0.723	0.714	0.366	2.4e-21
ASPGD|ASPL0000008076	270	AN6004 [Emericella nidulans (t	0.532	0.485	0.277	2.5e-07
DICTYBASE|DDB_G0291155	311	DDB_G0291155 "RNA-binding regi	0.418	0.331	0.3	6.1e-06

TAIR|locus:2129401 AT4G17720 [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
 Identities = 159/230 (69%), Positives = 184/230 (80%)

Query:     2 KSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETK--N 59
             +S+ E T++AYVTFKD+QGAETAVLLSGATIVD SV +S+APDYQL P A A  E K  N
Sbjct:    36 QSETERTKLAYVTFKDLQGAETAVLLSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSN 95

Query:    60 KTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIG 119
             K+P   +S LRKAEDVVSSMLAKGFILGKDA+ KAK+ DEKHQ TSTASAKVASFDKKIG
Sbjct:    96 KSPKAGDSVLRKAEDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIG 155

Query:   120 FSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWV 179
             F++KI+ GT VV ++VREVDQK+QVSEKTKSA  AAEQ VS+ GSAIMKNRYV TGA+WV
Sbjct:   156 FTDKINTGTVVVGEKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWV 215

Query:   180 AGAFNKVAQAAGEVXXXXXXXXXXXXXXXXRKMVDDFAQVHLAESPKTSS 229
              GAFNKVA+AA EV                RK+VD+FA+VHL+ESPK +S
Sbjct:   216 TGAFNKVAKAAEEVGQKAKEKVGMAEEEDKRKVVDEFARVHLSESPKAAS 265

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2172947 AT5G46870 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 146/244 (59%), Positives = 186/244 (76%)

Query:     2 KSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASA----LHET 57
             +S+N+ +++AYVTFKD+QGAETAVLL+G+TIVD SV+++++PDYQLPP A A    L E+
Sbjct:    36 QSENDGSKLAYVTFKDLQGAETAVLLTGSTIVDSSVTVTMSPDYQLPPDALASIESLKES 95

Query:    58 -KNKTPNGAE-SALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFD 115
              K+ +P   + S  RKAEDVVS M++KGF+LGKDA+ KAK+ DEKHQ TSTASA+V SFD
Sbjct:    96 NKSSSPTREDVSVFRKAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFD 155

Query:   116 KKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTG 175
             K+IGF+EKI+ GT+VVS++V+EVDQKFQV+EKTKSA  AAEQ VS+ GSAIMKNRYV TG
Sbjct:   156 KRIGFTEKINTGTTVVSEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTG 215

Query:   176 ASWVAGAFNKVAQAAGEVXXXXXXXXXXXXXXXX--RKMVDDFAQVHLAESPKTSSPSGH 233
             A+WV GAFN+V++AA EV                  +K+VD+ A VHL ESPK    S  
Sbjct:   216 ATWVTGAFNRVSKAAEEVGQKAKEKVGLAEEEEEEKKKVVDEVAIVHLTESPKALDQS-E 274

Query:   234 QPSK 237
             Q SK
Sbjct:   275 QDSK 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2148970 BPA1 "binding partner of acd11 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 131/193 (67%), Positives = 158/193 (81%)

Query:     1 MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
             ++S NE +  AYVTFK+ QGAETAVLLSGA+I D SV I LAP+Y  PPAA    ET++ 
Sbjct:    37 IQSSNEHS--AYVTFKETQGAETAVLLSGASIADQSVIIELAPNYS-PPAAPHA-ETQS- 91

Query:    61 TPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGF 120
               +GAES ++KAEDVVSSMLAKGFILGKDAV KAK FDEKH FTSTA+A VAS D+KIG 
Sbjct:    92 --SGAESVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGL 149

Query:   121 SEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVA 180
             S+K++ GTS+V+++++ VDQ FQV+E+TKS + AAEQ VSS GSA+MKNRYV TG SW A
Sbjct:   150 SQKLTAGTSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAA 209

Query:   181 GAFNKVAQAAGEV 193
             GAFN+VAQAAGEV
Sbjct:   210 GAFNRVAQAAGEV 222

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2200211 AT1G67950 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 100/192 (52%), Positives = 143/192 (74%)

Query:     1 MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
             M+S+ + +Q+AYVTFKD QGAETA+LL+GA I DL VSI+ A +YQLPP A AL +++  
Sbjct:    60 MRSETQESQVAYVTFKDSQGAETAMLLTGAVIADLRVSITPAVNYQLPPEALAL-DSQEH 118

Query:    61 TPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGF 120
             + NG   +++KAEDVV+ M+ +G+ LGKDA+ KAK FD++H   S ASA +AS D K+G 
Sbjct:   119 SFNGF--SVKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGL 176

Query:   121 SEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVA 180
             SEK+S+GT+VV++++R++D+++QV E TKSA  AAE+   S  +A+M N YV +GASW +
Sbjct:   177 SEKLSIGTTVVNEKLRDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFS 236

Query:   181 GAFNKVAQAAGE 192
              AF  V +A  E
Sbjct:   237 NAFGAVTKAVKE 248

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2145806 AT5G32450 [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 102/201 (50%), Positives = 140/201 (69%)

Query:     8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY----------QLPPAAS-ALHE 56
             ++IA+VTF D +  E A+LLSGATIVD  V+I+ A +Y           L  A    L E
Sbjct:    43 SRIAFVTFTDPKALEIALLLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQE 102

Query:    57 --TKNKTP-NGAESA-LRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVA 112
               T+ KT  +G   A + KA+DVV+++LAKG  LG+DAV KAK FDEKHQ  + ASAKV+
Sbjct:   103 STTQTKTNMDGNSRAYVSKAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVS 162

Query:   113 SFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYV 172
             SFDK++G +EK+SVG S V+++V+ VDQK QVS+KT +A  AAE+K++  GSA+  +RYV
Sbjct:   163 SFDKRVGLTEKLSVGISAVNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYV 222

Query:   173 FTGASWVAGAFNKVAQAAGEV 193
               GA+W +GAF+KVA+  G+V
Sbjct:   223 TAGAAWFSGAFSKVARV-GQV 242

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

TAIR|locus:2012567 AT1G14340 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 72/194 (37%), Positives = 115/194 (59%)

Query:    11 AYVTFKDMQGAETAVLLSGATIVDLSVSISL----APDYQLPPAASALHETKNKTPNGAE 66
             AYV FKD    ETAVLL+GATI+D  V I+       ++    A S   E ++ + + A+
Sbjct:    48 AYVMFKDSYSQETAVLLTGATILDQRVCITRWGQHHEEFDFWNATSRGFEDESDSQHYAQ 107

Query:    67 -------SALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIG 119
                     A+ KA++VV  MLA GF+LGKDA+ KAK FDE H  ++ A A+V+  +++IG
Sbjct:   108 RSEFNAGEAVTKAQEVVKIMLATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRIG 167

Query:   120 FSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWV 179
              ++KI  G     + VR  DQ++ VS+  KSA  A  +  ++  ++++ + Y  +GA W+
Sbjct:   168 LTDKIFTGL----EAVRMTDQRYHVSDTAKSAVFATGRTAAAAATSVVNSSYFSSGALWL 223

Query:   180 AGAFNKVAQAAGEV 193
             +GA  + A+AA ++
Sbjct:   224 SGALERAAKAASDL 237

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0006301 "postreplication repair" evidence=RCA

TAIR|locus:2102067 AT3G01210 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 74/202 (36%), Positives = 109/202 (53%)

Query:    11 AYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHE-----TKNKTPNGA 65
             AYVTF+D    + AVLLSGATIVD +V IS+   Y L  + +   E     T  ++   A
Sbjct:    47 AYVTFRDAYALDMAVLLSGATIVDQTVWISVYGVY-LHESNNLRQEEDYSVTVTRSDAFA 105

Query:    66 ES---ALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSE 122
              S   A+  A+ VV +MLAKG++L KDA+ KAK  DE  +F+S  + K+A     +G ++
Sbjct:   106 SSPGEAITVAQQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLVATKLAEISHYLGLTQ 165

Query:   123 KISVGTSVVSDRVREVDQKFQVSEKTKSAF-------VAAEQKVSSVGSA----IMKNRY 171
              I   +S+  + VR  D+K+  S+ TKSA        VAA      V +A    ++ +RY
Sbjct:   166 NIQ--SSM--ELVRSADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAAAAATSVVNSRY 221

Query:   172 VFTGASWVAGAFNKVAQAAGEV 193
                GA W + A  + A+AA  +
Sbjct:   222 FANGALWFSDALGRAAKAAAHI 243

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

ASPGD|ASPL0000008076 AN6004 [Emericella nidulans (taxid:162425)]

 Score = 137 (53.3 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 40/144 (27%), Positives = 73/144 (50%)

Query:    11 AYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY-QLPPAASALH-ETKNKTPNGAESA 68
             A VTF+    A+TA+LL    +    V++  A    ++    SA   E K++  N  E  
Sbjct:    49 ATVTFEKDAAAKTALLLDQTQLGPSVVTVKAAQTLDEIAGEHSATAAEAKDENQNDLEQE 108

Query:    69 LRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGT 128
              +    +++  LA G+ +   A+ KA   D+KH FTS  ++ +++FDKK G SE      
Sbjct:   109 DKPRSRIIAEYLAHGYTISDQAIQKAIAIDKKHGFTSRFTSVLSNFDKKTGASE------ 162

Query:   129 SVVSDRVREVDQKFQVSEKTKSAF 152
                  R + +D+ +++S+K  +++
Sbjct:   163 -----RAKGLDESYKISDKAANSW 181

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

DICTYBASE|DDB_G0291155 DDB_G0291155 "RNA-binding region RNP-1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 127 (49.8 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 33/110 (30%), Positives = 53/110 (48%)

Query:    70 RKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFT-------STASAKVASFDKKIGFSE 122
             R    VV+S++A G+ +G+DA  KA+  DE+H  +           AK    D  +  SE
Sbjct:   130 RSKTSVVASIIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHISE 189

Query:   123 KISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYV 172
               +     V +R   +D++FQ+S   KSA     Q+ S++  A  +N  V
Sbjct:   190 SAAAIKGAVVERANALDERFQISGFFKSASDMISQQASNLMKAAEENSTV 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.123   0.332    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      246       230   0.00083  113 3  10 23  0.46    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  223 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.67u 0.13s 28.80t   Elapsed:  00:00:02
  Total cpu time:  28.67u 0.13s 28.80t   Elapsed:  00:00:02
  Start:  Sat May 11 09:00:57 2013   End:  Sat May 11 09:00:59 2013

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
PLN03120	260	PLN03120, PLN03120, nucleic acid binding protein;	1e-122
PLN03121	243	PLN03121, PLN03121, nucleic acid binding protein;	2e-46
cd12269	69	cd12269, RRM_Vip1_like, RNA recognition motif in a	1e-10

>gnl|CDD|215588 PLN03120, PLN03120, nucleic acid binding protein; Provisional

 Score =  348 bits (894), Expect = e-122
 Identities = 170/228 (74%), Positives = 193/228 (84%), Gaps = 3/228 (1%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNK 60
           M+S+NE +QIAYVTFKD QGAETA+LLSGATIVD SV+I+ A DYQLPP A A   + N 
Sbjct: 36  MQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQLPPEALA-PLSSNS 94

Query: 61  TPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGF 120
             +GAESA++KAEDVVSSMLAKGFILGKDAV KAK FDEKHQ TSTASAKVAS DKKIG 
Sbjct: 95  PASGAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTSTASAKVASLDKKIGL 154

Query: 121 SEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVA 180
           SEK+S GT+VV+++V+EVDQK+QVSEKTKSA  AAEQKVSS GSAIMKNRYV TGASWV 
Sbjct: 155 SEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKVSSAGSAIMKNRYVLTGASWVT 214

Query: 181 GAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKTS 228
           GAFNKVA+AA EVGQK KEK G AEEEQ  ++VD +A +HL+ESPK  
Sbjct: 215 GAFNKVAKAAEEVGQKTKEKVGAAEEEQ--QVVDAYANIHLSESPKAV 260

Length = 260

>gnl|CDD|215589 PLN03121, PLN03121, nucleic acid binding protein; Provisional

 Score =  154 bits (390), Expect = 2e-46
 Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 17/202 (8%)

Query: 11  AYVTFKDMQGAETAVLLSGATIVDLSVSISL------------APDYQLPPAASALHETK 58
           AYVTFKD    ETAVLLSGATIVD  V I+              P +     ++  +ET 
Sbjct: 47  AYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYEDEFDFWNRPSWDTEDISTHNYETN 106

Query: 59  NKTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKI 118
                  E A+  A++VV +MLAKG++LGKDA+ KAK FDE HQ ++TA+AKVA   K+I
Sbjct: 107 QFASTPGE-AVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSATAAAKVAELSKRI 165

Query: 119 GFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASW 178
           G ++KI  G       VR VD+K+ VSE TKSA  A  +  ++  +A++ + Y   GA W
Sbjct: 166 GLTDKIFAGMEA----VRSVDEKYHVSEFTKSAATATGRTAAAAANAVVNSSYFSKGALW 221

Query: 179 VAGAFNKVAQAAGEVGQKAKEK 200
           V+ A  + A+AA ++G     +
Sbjct: 222 VSDALTRAAKAAADLGAHGSNQ 243

Length = 243

>gnl|CDD|240715 cd12269, RRM_Vip1_like, RNA recognition motif in a group of uncharacterized plant proteins similar to fission yeast Vip1

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 25/38 (65%), Positives = 29/38 (76%)

Query: 3  SDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSIS 40
             E +Q AYVTFKD Q  ETA+LLSGATIVD SV+I+
Sbjct: 32 RSGEQSQTAYVTFKDPQAQETALLLSGATIVDQSVTIT 69

This subfamily corresponds to the Vip1-like, uncharacterized proteins found in plants. Although their biological roles remain unclear, these proteins show high sequence similarity to the fission yeast Vip1. Like Vip1 protein, members in this family contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
PLN03120	260	nucleic acid binding protein; Provisional	100.0
PLN03121	243	nucleic acid binding protein; Provisional	100.0
PLN03120	260	nucleic acid binding protein; Provisional	95.54
PLN03121	243	nucleic acid binding protein; Provisional	94.48
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	93.66
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	93.05
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	91.33
smart00362	72	RRM_2 RNA recognition motif.	89.39
smart00360	71	RRM RNA recognition motif.	89.09
smart00361	70	RRM_1 RNA recognition motif.	86.6
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	84.85
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	84.29
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	80.38

>PLN03120 nucleic acid binding protein; Provisional

Probab=100.00  E-value=2.3e-73  Score=514.08  Aligned_cols=224  Identities=75%  Similarity=1.004  Sum_probs=205.3

Q ss_pred             CCCCCCCceEEEEEEeccchhhHHhhccCCeecCceEEEecCCCCCCCCCccccccccCCCCCCccchhhhHHHHHHHHH
Q 025931            1 MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHETKNKTPNGAESALRKAEDVVSSML   80 (246)
Q Consensus         1 ~~~~~e~sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~~~~~~~~~~~~~e~~~qe~kp~a~~~a~~IvAemL   80 (246)
                      |.++.+..+.|||||+++.++++||||||++|+|+.|+|+++++|.+|+.......... .......+++++++||++||
T Consensus        36 I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~~p~~~~~~~~~~~-~~~~~~~~~~~a~~vva~mL  114 (260)
T PLN03120         36 MQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQLPPEALAPLSSNS-PASGAESAVKKAEDVVSSML  114 (260)
T ss_pred             EeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCCCCccccccccccc-CCCCccchhhHHHHHHHHHH
Confidence            34566677899999999999999999999999999999999999999877643321111 11111148999999999999


Q ss_pred             hccccccHHHHHHHHHhhhhcCccHHHHHHHhhhhhhcCccccccccchhhhhhhhhhccccchhHhHHHHHHHHHHHHh
Q 025931           81 AKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVS  160 (246)
Q Consensus        81 AkGYvLgddAi~KAi~fDekHgiSs~f~a~v~slD~K~glTeKis~g~~~v~ekak~vDeky~VSektksa~~aaeq~~~  160 (246)
                      ||||+||||||+|||+||||||||++|+++|++||+||||||||+.|+++||+++|+||||||||+||++++.++||+++
T Consensus       115 AkGy~l~~dA~~kAk~fDekH~~ss~a~a~v~~~d~k~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~~~  194 (260)
T PLN03120        115 AKGFILGKDAVNKAKAFDEKHQLTSTASAKVASLDKKIGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKVS  194 (260)
T ss_pred             hhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhhhhhcCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCcccccchhhhhhHHHHHHHHHhhhhhhHHHHhhhhHHHHhhhhcccccccccCCCCCC
Q 025931          161 SVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQVHLAESPKT  227 (246)
Q Consensus       161 ~agsai~~n~Yvs~Ga~wvsga~~~vakaa~~~g~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (246)
                      +||||||+||||++||+||||||+||||||.|+|+|++|||+++|+++  +++++|+++|+++||++
T Consensus       195 ~a~sai~~~~y~~~ga~w~~~a~~~~a~aa~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  259 (260)
T PLN03120        195 SAGSAIMKNRYVLTGASWVTGAFNKVAKAAEEVGQKTKEKVGAAEEEQ--QVVDAYANIHLSESPKA  259 (260)
T ss_pred             HHHHHHhcCcccccchHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhc--ccccccceeecCCCCCC
Confidence            999999999999999999999999999999999999999999988887  99999999999999975

>PLN03121 nucleic acid binding protein; Provisional

Probab=100.00  E-value=1.9e-66  Score=464.91  Aligned_cols=195  Identities=42%  Similarity=0.593  Sum_probs=177.0

Q ss_pred             CCCCCCCceEEEEEEeccchhhHHhhccCCeecCceEEEecCCCCCCCCCcccccc----c-c-----CCCCCCcc-chh
Q 025931            1 MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALHE----T-K-----NKTPNGAE-SAL   69 (246)
Q Consensus         1 ~~~~~e~sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~~~~~~~~~~~~----~-e-----~~~qe~kp-~a~   69 (246)
                      |+++++..+.|||+|+++++++|||||||++|+|++|+|+++++|++++.....+.    + .     ....-..| .++
T Consensus        37 I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~  116 (243)
T PLN03121         37 IIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYEDEFDFWNRPSWDTEDISTHNYETNQFASTPGEAV  116 (243)
T ss_pred             EecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcccccCcccccCccccccccccccccccccCCCchhhH
Confidence            56788888999999999999999999999999999999999999999876422111    0 0     00111122 489


Q ss_pred             hhHHHHHHHHHhccccccHHHHHHHHHhhhhcCccHHHHHHHhhhhhhcCccccccccchhhhhhhhhhccccchhHhHH
Q 025931           70 RKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISVGTSVVSDRVREVDQKFQVSEKTK  149 (246)
Q Consensus        70 ~~a~~IvAemLAkGYvLgddAi~KAi~fDekHgiSs~f~a~v~slD~K~glTeKis~g~~~v~ekak~vDeky~VSektk  149 (246)
                      ++|++||++||||||+||+|||+|||+|||+||||++++++|.+||+|+||||||++|+    +++|+||||||||++||
T Consensus       117 ~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss~a~a~v~~~d~~iglt~k~~~g~----~~vk~vDeky~vs~~tk  192 (243)
T PLN03121        117 TVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSATAAAKVAELSKRIGLTDKIFAGM----EAVRSVDEKYHVSEFTK  192 (243)
T ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHhhhhhhhhhhhhccchhhhhhhH----HHHHhhhhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999    88999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhcCcccccchhhhhhHHHHHHHHHhhhhhhHHH
Q 025931          150 SAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKE  199 (246)
Q Consensus       150 sa~~aaeq~~~~agsai~~n~Yvs~Ga~wvsga~~~vakaa~~~g~~~~e  199 (246)
                      ||+.++||+++.|||+|||||||++||+||||||+||||||.|+|+++++
T Consensus       193 sA~~aa~~~~~~a~sai~~~~Y~~~Ga~w~sga~~~~akaa~~~g~~~~~  242 (243)
T PLN03121        193 SAATATGRTAAAAANAVVNSSYFSKGALWVSDALTRAAKAAADLGAHGSN  242 (243)
T ss_pred             HHHHHHHHHHHHhhhhhhhcchhhcchHHHHHHHHHHHHHHHHhhccccC
Confidence            99999999999999999999999999999999999999999999999976

>PLN03120 nucleic acid binding protein; Provisional

Probab=95.54  E-value=0.014  Score=54.01  Aligned_cols=51  Identities=25%  Similarity=0.285  Sum_probs=41.4

Q ss_pred             ccccHHHHHHHHHhhhhcCccHHHH-------HHHhhhhhhcCccccccccchhhhhh
Q 025931           84 FILGKDAVFKAKTFDEKHQFTSTAS-------AKVASFDKKIGFSEKISVGTSVVSDR  134 (246)
Q Consensus        84 YvLgddAi~KAi~fDekHgiSs~f~-------a~v~slD~K~glTeKis~g~~~v~ek  134 (246)
                      .-|+-.+..+...||+|.|||.++.       .++.++|+|||+|||.....++..++
T Consensus       135 H~~ss~a~a~v~~~d~k~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~  192 (260)
T PLN03120        135 HQLTSTASAKVASLDKKIGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQK  192 (260)
T ss_pred             hchHHHHHHHHHhhhhhcCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHH
Confidence            3456778889999999999999865       68999999999999877766554333

>PLN03121 nucleic acid binding protein; Provisional

Probab=94.48  E-value=0.045  Score=50.32  Aligned_cols=47  Identities=19%  Similarity=0.165  Sum_probs=39.4

Q ss_pred             ccccccHHHHHHHHHhhhhcCccHHHH---HHHhhhhhhcCccccccccc
Q 025931           82 KGFILGKDAVFKAKTFDEKHQFTSTAS---AKVASFDKKIGFSEKISVGT  128 (246)
Q Consensus        82 kGYvLgddAi~KAi~fDekHgiSs~f~---a~v~slD~K~glTeKis~g~  128 (246)
                      .-+-|+-.|-.|.-+||+|.|||.++.   .+|.++|+|||++|+-....
T Consensus       146 E~h~lss~a~a~v~~~d~~iglt~k~~~g~~~vk~vDeky~vs~~tksA~  195 (243)
T PLN03121        146 ESHQVSATAAAKVAELSKRIGLTDKIFAGMEAVRSVDEKYHVSEFTKSAA  195 (243)
T ss_pred             HhcCccHhhhhhhhhhhhhccchhhhhhhHHHHHhhhhhhhhHHHHHHHH
Confidence            345688899999999999999999995   67899999999997644433

>PF13893 RRM_5: RNA recognition motif

Probab=93.66  E-value=0.095  Score=35.82  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEe
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSIS   40 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It   40 (246)
                      ...|+|+|.+...|+.|+- |||..+.|.+|.|.
T Consensus        21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~   54 (56)
T PF13893_consen   21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVS   54 (56)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence            4689999999999999996 99999999999985

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PF00076 RRM_1: RNA recognition motif

Probab=93.05  E-value=0.12  Score=35.37  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             CCCceEEEEEEeccchhhHHhh-ccCCeecCceEE
Q 025931            5 NEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVS   38 (246)
Q Consensus         5 ~e~sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~   38 (246)
                      +.....|+|+|+++..++.|+- |+|-.|.|..|+
T Consensus        36 ~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen   36 GKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             ccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            3456789999999999999999 999999998874

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=91.33  E-value=0.24  Score=41.26  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++.+++.||- |||..|.|..|.|..+
T Consensus        76 kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a  111 (144)
T PLN03134         76 RGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA  111 (144)
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence            3579999999999999995 9999999999999755

>smart00362 RRM_2 RNA recognition motif

Probab=89.39  E-value=0.58  Score=30.86  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=28.2

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEE
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSI   39 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~I   39 (246)
                      ...++|+|.++..++.|+. |+|..+.|..|.|
T Consensus        39 ~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v   71 (72)
T smart00362       39 KGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV   71 (72)
T ss_pred             CceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence            4689999999999999986 6779999988887

>smart00360 RRM RNA recognition motif

Probab=89.09  E-value=0.63  Score=30.48  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=28.7

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEe
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSIS   40 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It   40 (246)
                      ...|+|+|.+...++-|+ .|+|..+.|..|.|.
T Consensus        38 ~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360       38 KGFAFVEFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             CceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            348999999999999998 678899999998873

>smart00361 RRM_1 RNA recognition motif

Probab=86.60  E-value=0.76  Score=33.09  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEE
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSI   39 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~I   39 (246)
                      -..+||+|+++..+..|+- |+|..+.|..|.+
T Consensus        37 rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361       37 RGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            3569999999999999987 8999999999876

>PF14259 RRM_6: RNA recognition motif (a

Probab=84.85  E-value=1  Score=31.41  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=28.2

Q ss_pred             CCceEEEEEEeccchhhHHhhccC-CeecCceEE
Q 025931            6 EWTQIAYVTFKDMQGAETAVLLSG-ATIVDLSVS   38 (246)
Q Consensus         6 e~sqtA~VTFe~~~Aa~TALLLsG-AtL~d~~V~   38 (246)
                      .....|+|+|.++..++.|+-+.+ -.|.|..|.
T Consensus        37 ~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen   37 QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            347899999999999999998888 778887764

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=84.29  E-value=0.97  Score=43.30  Aligned_cols=38  Identities=21%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCCCCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQ   46 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~~   46 (246)
                      ..|||+|+++..|..||-|+|..|.|..|.|....+|.
T Consensus       224 g~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~  261 (509)
T TIGR01642       224 NFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYI  261 (509)
T ss_pred             CEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccC
Confidence            47999999999999999999999999999998666665

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=80.38  E-value=1.4  Score=39.95  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=30.9

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      .-|||+|.++..++.|| .|||..|.|..|.|..+
T Consensus        46 g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a   80 (352)
T TIGR01661        46 GYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA   80 (352)
T ss_pred             eEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence            47999999999999999 69999999999999643

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 40/321 (12%), Positives = 75/321 (23%), Gaps = 120/321 (37%)

Query: 1   MKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPPAASALH----- 55
           + S +  +      F         +L     +V   V   L  +Y+     S +      
Sbjct: 55  IMSKDAVSGT-LRLF-------WTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQ 104

Query: 56  ---------ETKNKTPNGAES-------------ALRKA--ED------VVSSMLAKGFI 85
                    E +++  N  +               LR+A  E       ++  +   G  
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGS- 161

Query: 86  LGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKI---SVGTSVVSDRVREVDQKF 142
            GK               T  A     S+  +     KI   ++      + V E+ QK 
Sbjct: 162 -GK---------------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 143 QV------------SEKTKSAFVAAEQKVSSVGSAIMKNRY---------VFTGASWVAG 181
                         S   K    + + ++  +   +    Y         V    +    
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQN--AKAWN 260

Query: 182 AFN------------KVAQAAGEVGQKA----KEKAGMAEEEQKRKMVDDFAQVHLAESP 225
           AFN            +V                    +  +E K        +    +  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKY--LDCR 314

Query: 226 KTSSPSGHQPSKTEPAQGLVL 246
               P   +   T P     L
Sbjct: 315 PQDLP--REVLTTNP---RRL 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	95.81
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	95.77
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	95.73
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	95.42
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	95.37
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	95.36
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	95.25
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	95.11
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	94.95
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	94.93
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	94.93
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	94.87
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	94.86
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	94.84
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	94.83
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	94.78
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	94.77
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	94.76
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	94.74
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	94.7
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	94.69
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	94.59
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	94.59
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	94.59
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	94.59
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	94.59
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	94.57
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	94.51
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	94.5
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	94.48
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	94.47
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	94.37
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	94.36
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	94.35
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	94.31
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	94.29
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	94.26
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	94.23
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	94.18
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	94.17
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	94.16
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	94.15
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	94.14
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	94.13
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	94.06
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	94.05
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	94.04
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	93.99
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	93.98
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	93.96
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	93.91
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	93.89
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	93.84
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	93.83
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	93.81
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	93.81
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	93.8
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	93.79
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	93.76
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	93.74
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	93.72
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	93.69
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	93.68
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	93.67
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	93.66
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	93.63
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	93.58
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	93.57
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	93.54
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	93.51
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	93.45
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	93.42
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	93.39
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	93.37
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	93.3
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	93.28
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	93.27
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	93.27
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	93.21
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	93.2
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	93.18
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	93.17
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	93.14
1x5p_A	97	Negative elongation factor E; structure genomics,	93.12
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	93.04
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	93.0
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	92.98
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	92.95
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	92.94
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	92.86
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	92.79
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	92.79
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	92.76
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	92.71
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	92.69
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	92.69
2div_A	99	TRNA selenocysteine associated protein; structural	92.57
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	92.44
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	92.38
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	92.37
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	92.29
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	92.28
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	92.24
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	92.2
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	92.2
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	92.07
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	91.9
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	91.79
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	91.65
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	91.3
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	91.27
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	91.22
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	91.12
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	91.09
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	91.04
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	90.93
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	90.83
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	90.72
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	90.67
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	90.56
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	90.53
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	90.52
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	90.5
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	90.35
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	90.31
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	90.12
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	90.03
2dis_A	109	Unnamed protein product; structural genomics, RRM	89.94
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	89.94
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	89.93
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	89.6
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	89.55
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	89.49
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	89.44
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	88.97
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	89.35
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	89.3
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	89.27
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	89.18
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	89.15
1x4e_A	85	RNA binding motif, single-stranded interacting pro	89.13
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	89.03
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	89.0
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	88.93
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	88.21
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	88.19
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	88.05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	87.61
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	87.49
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	87.41
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	87.25
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	86.57
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	86.49
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	86.09
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	85.11
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	84.26
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	83.74
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	83.62
1x5o_A	114	RNA binding motif, single-stranded interacting pro	83.54
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	83.32
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	80.62
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	80.52
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	80.04

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=95.81  E-value=0.014  Score=43.42  Aligned_cols=43  Identities=16%  Similarity=0.254  Sum_probs=35.5

Q ss_pred             CCCCCc-eEEEEEEeccchhhHHhh-ccCCeecCc-eEEEecCCCC
Q 025931            3 SDNEWT-QIAYVTFKDMQGAETAVL-LSGATIVDL-SVSISLAPDY   45 (246)
Q Consensus         3 ~~~e~s-qtA~VTFe~~~Aa~TALL-LsGAtL~d~-~V~It~~~~~   45 (246)
                      +..+.+ ..|+|+|+++..++.|+- |+|..|.|. .|.|..+.+.
T Consensus        55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~  100 (105)
T 2nlw_A           55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF  100 (105)
T ss_dssp             CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred             CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence            334443 489999999999999998 899999998 9999876544

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=95.77  E-value=0.017  Score=40.80  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+.|+|..|.|..|.|..+
T Consensus        48 ~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a   82 (89)
T 3ucg_A           48 KGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPK   82 (89)
T ss_dssp             CEEEEEEESSTHHHHHHGGGTTCEETTEECEEEET
T ss_pred             ceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEc
Confidence            45899999999999999999999999999999865

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.73  E-value=0.02  Score=42.00  Aligned_cols=35  Identities=26%  Similarity=0.475  Sum_probs=32.4

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus        57 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~   91 (103)
T 2dng_A           57 GFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE   91 (103)
T ss_dssp             EEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred             eEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence            48999999999999999999999999999998653

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.42  E-value=0.014  Score=42.22  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=31.9

Q ss_pred             EEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931           10 IAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP   43 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~   43 (246)
                      .|+|+|+++..++.|+-|+|..|.|..|.|..+.
T Consensus        47 ~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~   80 (94)
T 2e5g_A           47 FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE   80 (94)
T ss_dssp             EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred             EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence            8999999999999999999999999999997553

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=95.37  E-value=0.012  Score=41.45  Aligned_cols=33  Identities=18%  Similarity=0.403  Sum_probs=30.8

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEe
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSIS   40 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It   40 (246)
                      ...|+|+|+++..++.|+.|+|..|.|..|.|.
T Consensus        53 kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~   85 (87)
T 2hzc_A           53 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR   85 (87)
T ss_dssp             SSEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred             CcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEe
Confidence            357999999999999999999999999999996

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.36  E-value=0.018  Score=41.52  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=30.7

Q ss_pred             EEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931           11 AYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus        11 A~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      |+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        57 afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~   90 (96)
T 2e44_A           57 VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP   90 (96)
T ss_dssp             EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred             EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            9999999999999996 99999999999998653

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=95.25  E-value=0.0081  Score=43.30  Aligned_cols=35  Identities=11%  Similarity=0.114  Sum_probs=30.5

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus        46 G~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~   81 (90)
T 3p5t_L           46 GFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN   81 (90)
T ss_dssp             EEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred             cEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence            36999999999999999 799999999999998653

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=95.11  E-value=0.015  Score=39.97  Aligned_cols=34  Identities=18%  Similarity=0.130  Sum_probs=31.3

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      ...|+|+|+++..++.|+-|+|..|.|..|.|..
T Consensus        41 ~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~   74 (75)
T 2mss_A           41 RGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK   74 (75)
T ss_dssp             CBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred             CcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence            3589999999999999999999999999999864

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.95  E-value=0.019  Score=44.07  Aligned_cols=35  Identities=20%  Similarity=0.119  Sum_probs=32.5

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++..++.||.|+|..|+|..|.|..+
T Consensus        56 ~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a   90 (109)
T 2dnn_A           56 NGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA   90 (109)
T ss_dssp             CSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             CeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence            45899999999999999999999999999999765

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.93  E-value=0.041  Score=39.78  Aligned_cols=36  Identities=19%  Similarity=0.131  Sum_probs=32.7

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecCCC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD   44 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~~   44 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+..
T Consensus        51 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   87 (99)
T 1whw_A           51 GFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI   87 (99)
T ss_dssp             SEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            48999999999999999 9999999999999986633

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.93  E-value=0.034  Score=40.75  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=31.9

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~   43 (246)
                      ..|||+|+++..++.||-++|..|.|..|.|..+.
T Consensus        59 g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~   93 (105)
T 2dh8_A           59 GFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT   93 (105)
T ss_dssp             EEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred             eEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence            48999999999999999999999999999997653

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=94.87  E-value=0.018  Score=40.34  Aligned_cols=35  Identities=20%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        49 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   84 (85)
T 3mdf_A           49 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   84 (85)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            347999999999999999 89999999999999743

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.86  E-value=0.019  Score=41.08  Aligned_cols=35  Identities=11%  Similarity=0.128  Sum_probs=32.2

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.||-|+|..|.|..|.|..+
T Consensus        50 ~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a   84 (91)
T 2dgw_A           50 TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE   84 (91)
T ss_dssp             EEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred             ceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence            34899999999999999999999999999999754

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.84  E-value=0.037  Score=39.55  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=32.2

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        48 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   83 (95)
T 2dnz_A           48 GYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT   83 (95)
T ss_dssp             SEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence            489999999999999998 99999999999998653

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.83  E-value=0.032  Score=40.25  Aligned_cols=36  Identities=19%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   86 (98)
T 2cpf_A           50 MGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE   86 (98)
T ss_dssp             EEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred             ccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence            3589999999999999999 89999999999998653

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.78  E-value=0.032  Score=40.48  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus        52 ~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~   87 (99)
T 2dgs_A           52 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE   87 (99)
T ss_dssp             CSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred             CceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            358999999999999999999999999999998653

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=94.77  E-value=0.037  Score=39.03  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=30.6

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      ..|+|+|+++..++.|+-++|..|.|..|.|..
T Consensus        54 g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~   86 (87)
T 3s7r_A           54 GFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK   86 (87)
T ss_dssp             EEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred             cEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence            479999999999999999999999999999864

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=94.76  E-value=0.018  Score=39.55  Aligned_cols=34  Identities=12%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      ...|+|+|+++..++.|+-++|..|.|..|.|..
T Consensus        41 ~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~   74 (75)
T 1iqt_A           41 RGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV   74 (75)
T ss_dssp             CCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence            3489999999999999999999999999998853

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.74  E-value=0.037  Score=39.49  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        58 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   92 (95)
T 2cqc_A           58 GFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP   92 (95)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence            489999999999999998 8999999999999754

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.70  E-value=0.025  Score=41.53  Aligned_cols=34  Identities=18%  Similarity=0.399  Sum_probs=31.9

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++-||.|+|..|.|..|.|..+
T Consensus        58 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a   91 (104)
T 1wi8_A           58 GFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA   91 (104)
T ss_dssp             SCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred             eEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence            4799999999999999999999999999999865

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.69  E-value=0.026  Score=41.77  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   96 (109)
T 1x4a_A           61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP   96 (109)
T ss_dssp             SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence            458999999999999999 99999999999999755

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.59  E-value=0.026  Score=41.08  Aligned_cols=34  Identities=21%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        55 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   89 (102)
T 1x5s_A           55 GFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA   89 (102)
T ss_dssp             SEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            48999999999999999 89999999999999754

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=94.59  E-value=0.018  Score=40.41  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   82 (88)
T 4a8x_A           47 KGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV   82 (88)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence            4589999999999999998 8999999999999854

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.59  E-value=0.015  Score=44.39  Aligned_cols=35  Identities=11%  Similarity=0.133  Sum_probs=32.1

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++..++.||-|+|..|.|..|.|..+
T Consensus        67 ~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a  101 (124)
T 1wel_A           67 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI  101 (124)
T ss_dssp             EEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred             CeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence            35799999999999999999999999999999754

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=94.59  E-value=0.033  Score=39.13  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.6

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   83 (87)
T 3bs9_A           48 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA   83 (87)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence            3489999999999999998 8999999999999744

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=94.59  E-value=0.015  Score=40.88  Aligned_cols=37  Identities=14%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             CCCCCc-eEEEEEEeccchhhHHhh-ccCCeecCc-eEEE
Q 025931            3 SDNEWT-QIAYVTFKDMQGAETAVL-LSGATIVDL-SVSI   39 (246)
Q Consensus         3 ~~~e~s-qtA~VTFe~~~Aa~TALL-LsGAtL~d~-~V~I   39 (246)
                      +..+.+ ..|+|+|+++..++.|+- |||..|.|. .|.|
T Consensus        41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A           41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            334443 589999999999999998 999999999 7766

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.57  E-value=0.028  Score=41.92  Aligned_cols=33  Identities=27%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      ..|+|+|+++..++.||.|+|..|.|..|.|..
T Consensus        68 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~  100 (114)
T 2cq4_A           68 GIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA  100 (114)
T ss_dssp             CCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred             cEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence            489999999999999999999999999999974

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.51  E-value=0.045  Score=39.90  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus        55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   91 (103)
T 2dnm_A           55 RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR   91 (103)
T ss_dssp             CSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred             CeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence            3479999999999999998 99999999999998653

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=94.50  E-value=0.021  Score=40.65  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~   84 (92)
T 2dgv_A           48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR   84 (92)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            3579999999999999998 99999999999997653

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=94.48  E-value=0.036  Score=41.17  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=30.8

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..|+.|+ -|+|..|.|..|.|..+
T Consensus        62 G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A   96 (99)
T 4fxv_A           62 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA   96 (99)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            37999999999999999 59999999999999744

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.47  E-value=0.027  Score=40.26  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEec
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISL   41 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~   41 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|.-
T Consensus        59 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   92 (94)
T 2e5h_A           59 GVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI   92 (94)
T ss_dssp             TCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred             cEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence            47999999999999999 7999999999999964

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.37  E-value=0.063  Score=39.13  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=32.1

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus        55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   90 (103)
T 2cq3_A           55 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA   90 (103)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            4589999999999999996 8999999999999865

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.36  E-value=0.041  Score=40.09  Aligned_cols=34  Identities=32%  Similarity=0.253  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        53 g~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   87 (96)
T 2dgx_A           53 LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA   87 (96)
T ss_dssp             CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence            369999999999999998 9999999999999865

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.35  E-value=0.041  Score=39.96  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus        55 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   89 (102)
T 2fc8_A           55 GFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA   89 (102)
T ss_dssp             EEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence            489999999999999997 9999999999999855

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.31  E-value=0.071  Score=38.12  Aligned_cols=35  Identities=17%  Similarity=0.481  Sum_probs=32.3

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   83 (96)
T 1x5t_A           48 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA   83 (96)
T ss_dssp             CSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred             CeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            3489999999999999998 9999999999999865

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=94.29  E-value=0.053  Score=38.76  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=31.9

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   92 (95)
T 2ywk_A           57 KSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP   92 (95)
T ss_dssp             EEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence            3589999999999999998 9999999999999754

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=94.26  E-value=0.037  Score=40.24  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||-|+|..|.|..|.|..+
T Consensus        59 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a   92 (101)
T 1fj7_A           59 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP   92 (101)
T ss_dssp             TEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred             cEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence            4799999999999999999999999999999755

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=94.23  E-value=0.035  Score=40.37  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        64 G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A   98 (99)
T 2la6_A           64 GEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA   98 (99)
T ss_dssp             EEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence            48999999999999999 59999999999999643

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=94.18  E-value=0.033  Score=42.49  Aligned_cols=35  Identities=9%  Similarity=0.101  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++..++.||-|+|..|.|..|.|..+
T Consensus        61 ~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a   95 (118)
T 2db1_A           61 SGEAFVELESEDDVKLALKKDRESMGHRYIEVFKS   95 (118)
T ss_dssp             EEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEE
T ss_pred             CeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence            34899999999999999999999999999999754

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=94.17  E-value=0.05  Score=37.83  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a   78 (83)
T 3md1_A           43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA   78 (83)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence            4579999999999999998 8999999999999755

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.16  E-value=0.051  Score=40.69  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        64 G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a   98 (111)
T 2cpi_A           64 ASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG   98 (111)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred             eEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence            489999999999999998 7999999999999754

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.15  E-value=0.059  Score=38.44  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      .|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        45 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   79 (90)
T 2dnp_A           45 YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST   79 (90)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence            69999999999999997 99999999999998653

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.14  E-value=0.056  Score=39.42  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        58 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   92 (103)
T 2cq0_A           58 GFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA   92 (103)
T ss_dssp             EEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence            479999999999999998 9999999999999755

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.13  E-value=0.073  Score=39.43  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus        66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  101 (113)
T 2cpe_A           66 GDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR  101 (113)
T ss_dssp             SEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence            489999999999999996 89999999999998653

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.06  E-value=0.065  Score=38.89  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=31.2

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      .|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        53 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   86 (99)
T 2cpd_A           53 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA   86 (99)
T ss_dssp             EEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred             eEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence            79999999999999998 9999999999999855

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.05  E-value=0.025  Score=42.28  Aligned_cols=34  Identities=24%  Similarity=0.149  Sum_probs=31.5

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      -.|||+|+++..++.||-|++..|.+..|.|..+
T Consensus        56 G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~   89 (102)
T 1wez_A           56 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN   89 (102)
T ss_dssp             EEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred             eEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence            3799999999999999999999999999999754

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=94.04  E-value=0.058  Score=40.60  Aligned_cols=36  Identities=14%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus        78 ~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~  113 (124)
T 2jwn_A           78 KGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR  113 (124)
T ss_dssp             EEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred             ccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence            458999999999999999999999999999998653

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.99  E-value=0.064  Score=38.40  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=30.9

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      .|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        46 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   79 (92)
T 2dgt_A           46 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS   79 (92)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence            7999999999999999 69999999999999865

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.98  E-value=0.062  Score=39.76  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        62 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   96 (109)
T 1x4g_A           62 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG   96 (109)
T ss_dssp             TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence            47999999999999999 89999999999999855

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=93.96  E-value=0.059  Score=40.79  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=32.5

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|++...++.|+- |+|..|.|..|.|..+.
T Consensus        76 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  112 (124)
T 2kt5_A           76 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA  112 (124)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred             eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence            3589999999999999998 99999999999998543

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=93.91  E-value=0.043  Score=40.24  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=31.5

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      .|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        47 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   81 (103)
T 2dgu_A           47 YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK   81 (103)
T ss_dssp             CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence            69999999999999998 89999999999998653

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=93.89  E-value=0.058  Score=40.19  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|| .|+|..|.|..|.|..+
T Consensus        68 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  102 (115)
T 2cpz_A           68 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK  102 (115)
T ss_dssp             EEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             ccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            47999999999999999 89999999999999855

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.84  E-value=0.077  Score=38.66  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   91 (103)
T 2d9p_A           55 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ   91 (103)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred             CEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence            3589999999999999998 99999999999998653

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=93.83  E-value=0.066  Score=38.62  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=32.1

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        44 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a   79 (96)
T 2x1f_A           44 KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS   79 (96)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence            458999999999999999 79999999999999755

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=93.81  E-value=0.038  Score=39.68  Aligned_cols=34  Identities=38%  Similarity=0.441  Sum_probs=31.7

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        54 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   88 (96)
T 1fjc_A           54 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT   88 (96)
T ss_dssp             EEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence            479999999999999998 9999999999999765

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.81  E-value=0.077  Score=38.47  Aligned_cols=35  Identities=20%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   89 (102)
T 2cqb_A           54 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   89 (102)
T ss_dssp             SSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence            458999999999999999 69999999999999755

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=93.80  E-value=0.066  Score=39.78  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=32.4

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecCCC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD   44 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~~   44 (246)
                      ..|+|+|+++..++.|| .|+|..|.|..|.|..+..
T Consensus        58 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   94 (115)
T 2dgo_A           58 GYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR   94 (115)
T ss_dssp             EEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            48999999999999999 4999999999999986643

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=93.79  E-value=0.077  Score=41.96  Aligned_cols=40  Identities=23%  Similarity=0.415  Sum_probs=35.3

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecCCCCCC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQL   47 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~~~   47 (246)
                      ...|+|+|.++..++.||-|+|..|.|..|.|..+..+..
T Consensus        51 ~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~   90 (198)
T 2yh0_A           51 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP   90 (198)
T ss_dssp             TTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCC
T ss_pred             CCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCC
Confidence            3579999999999999999999999999999987665543

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=93.76  E-value=0.064  Score=38.29  Aligned_cols=35  Identities=31%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a   92 (95)
T 2ek1_A           57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP   92 (95)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence            3579999999999999997 9999999999999754

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=93.74  E-value=0.031  Score=41.59  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=32.8

Q ss_pred             CCceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            6 EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         6 e~sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      .....|+|+|.++..++.|+- |+|..|.|..|.|..+
T Consensus        45 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   82 (115)
T 3lqv_A           45 ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY   82 (115)
T ss_dssp             TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence            334589999999999999998 9999999999999754

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.72  E-value=0.071  Score=38.00  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP   43 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~   43 (246)
                      .|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus        44 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   78 (90)
T 2dnq_A           44 YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK   78 (90)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred             EEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence            6999999999999999 699999999999998653

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=93.69  E-value=0.068  Score=41.32  Aligned_cols=40  Identities=23%  Similarity=0.415  Sum_probs=35.1

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecCCCCCC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQL   47 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~~~   47 (246)
                      ...|+|+|.++..++.|+-|+|..|.|..|.|.....+..
T Consensus        51 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~   90 (172)
T 2g4b_A           51 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP   90 (172)
T ss_dssp             TTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC
T ss_pred             CCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC
Confidence            3579999999999999999999999999999987655543

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.68  E-value=0.1  Score=37.90  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus        53 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   88 (101)
T 2fc9_A           53 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ   88 (101)
T ss_dssp             CSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence            3589999999999999998 9999999999999865

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=93.67  E-value=0.052  Score=38.50  Aligned_cols=35  Identities=11%  Similarity=0.299  Sum_probs=29.8

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++. ++.|+. |+|..|.|..|.|..+.
T Consensus        43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~   78 (90)
T 2ki2_A           43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN   78 (90)
T ss_dssp             CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred             ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence            458999999999 777776 89999999999998653

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.66  E-value=0.06  Score=39.03  Aligned_cols=34  Identities=26%  Similarity=0.496  Sum_probs=31.5

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        59 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   93 (100)
T 2do4_A           59 GLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS   93 (100)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            57999999999999999 89999999999999754

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=93.63  E-value=0.038  Score=41.77  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|| -|+|..|.|..|.|..+
T Consensus        46 g~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a   80 (115)
T 4f25_A           46 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF   80 (115)
T ss_dssp             EEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             ceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            47999999999999999 59999999999999865

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=93.58  E-value=0.036  Score=41.17  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        63 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   97 (110)
T 1wf1_A           63 GYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA   97 (110)
T ss_dssp             TEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            47999999999999999 89999999999999865

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=93.57  E-value=0.052  Score=40.72  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        69 g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a  103 (108)
T 2jrs_A           69 GYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV  103 (108)
T ss_dssp             EEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            48999999999999999 59999999999999754

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.54  E-value=0.076  Score=39.70  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  104 (109)
T 2err_A           69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA  104 (109)
T ss_dssp             TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            4589999999999999998 8999999999999755

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=93.51  E-value=0.037  Score=40.63  Aligned_cols=35  Identities=17%  Similarity=0.388  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|++...++.||-|+|..|.|..|.|..+
T Consensus        61 ~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a   95 (100)
T 2j76_E           61 KGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA   95 (100)
T ss_dssp             CSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred             CeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence            34899999999999999999999999999999754

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.45  E-value=0.083  Score=38.03  Aligned_cols=35  Identities=31%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus        57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a   92 (98)
T 2cqp_A           57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   92 (98)
T ss_dssp             EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence            357999999999999999 89999999999999754

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.42  E-value=0.054  Score=39.32  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   85 (104)
T 1p1t_A           50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA   85 (104)
T ss_dssp             EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence            358999999999999999 59999999999999754

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.39  E-value=0.079  Score=38.57  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=32.2

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus        55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   90 (103)
T 2cqi_A           55 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA   90 (103)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence            3589999999999999998 9999999999999865

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.37  E-value=0.041  Score=39.94  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        57 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   91 (97)
T 2e5j_A           57 RRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA   91 (97)
T ss_dssp             TEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            47999999999999999 88999999999999754

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.30  E-value=0.055  Score=39.46  Aligned_cols=34  Identities=15%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        58 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   92 (105)
T 1x5u_A           58 GYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA   92 (105)
T ss_dssp             SCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence            379999999999999998 8999999999999855

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.28  E-value=0.13  Score=38.38  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||-++|..|.|..|.|..+
T Consensus        70 g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a  103 (116)
T 1x4b_A           70 GFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA  103 (116)
T ss_dssp             SEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred             ceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence            4899999999999999999999999999999865

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.27  E-value=0.062  Score=39.92  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=31.8

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecC-----ceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVD-----LSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d-----~~V~It~~~   43 (246)
                      ..|+|+|+++..++.||- |||..|.|     ..|.|..+.
T Consensus        51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~   91 (108)
T 1x4c_A           51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG   91 (108)
T ss_dssp             TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred             CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence            479999999999999998 99999999     999998653

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=93.27  E-value=0.045  Score=41.34  Aligned_cols=35  Identities=17%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|| .|+|..|.|..|.|..+
T Consensus        64 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   99 (126)
T 3ex7_B           64 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC   99 (126)
T ss_dssp             CSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence            348999999999999999 59999999999999754

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.21  E-value=0.069  Score=39.50  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||-++|..|++..|.|..+
T Consensus        58 G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~   91 (104)
T 1wg5_A           58 GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS   91 (104)
T ss_dssp             SEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred             eEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence            4799999999999999999999999999999754

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=93.20  E-value=0.047  Score=39.04  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=32.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..++
T Consensus        41 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~   76 (88)
T 1wg1_A           41 RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP   76 (88)
T ss_dssp             TEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence            479999999999999998 99999999999998653

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=93.18  E-value=0.036  Score=41.23  Aligned_cols=35  Identities=11%  Similarity=-0.006  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++..++.||-|+|..|+|..|.|..+
T Consensus        55 ~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a   89 (107)
T 2lmi_A           55 RGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI   89 (107)
T ss_dssp             CSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEEC
T ss_pred             eeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEEC
Confidence            34899999999999999999999999999999754

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.17  E-value=0.085  Score=39.00  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+. |+|..|.|..|.|..+
T Consensus        56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   91 (114)
T 2do0_A           56 RGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD   91 (114)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence            3589999999999999998 9999999999999854

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=93.14  E-value=0.069  Score=39.05  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        70 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  105 (107)
T 3ulh_A           70 LGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV  105 (107)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence            3489999999999999999 8999999999999754

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.12  E-value=0.072  Score=38.59  Aligned_cols=34  Identities=29%  Similarity=0.601  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        50 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a   84 (97)
T 1x5p_A           50 NCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA   84 (97)
T ss_dssp             TEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence            37999999999999999 89999999999999754

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.04  E-value=0.048  Score=41.00  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=31.9

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++..++.||-++|..|.|..|.|..+
T Consensus        57 ~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a   91 (114)
T 2cpy_A           57 LGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV   91 (114)
T ss_dssp             SSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred             ceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence            34799999999999999999999999999999754

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=93.00  E-value=0.14  Score=38.86  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=34.1

Q ss_pred             CceEEEEEEeccchhhHHh-hccCCeecCceEEEecCCCC
Q 025931            7 WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY   45 (246)
Q Consensus         7 ~sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~~~   45 (246)
                      ....|+|+|+++..++.|+ .|+|..|.|..|.|..+...
T Consensus        40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~   79 (166)
T 3md3_A           40 NVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS   79 (166)
T ss_dssp             CEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence            3457999999999999999 99999999999999866433

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=92.98  E-value=0.11  Score=37.66  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=28.5

Q ss_pred             eEEEEEEeccchhhHHh-hc-cCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LL-SGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LL-sGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..|+.|| .| ++..|.|..|.|.-+
T Consensus        45 g~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a   80 (91)
T 2lxi_A           45 GFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS   80 (91)
T ss_dssp             SEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred             ceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence            46999999999999998 34 456799999999743

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=92.95  E-value=0.075  Score=38.99  Aligned_cols=34  Identities=12%  Similarity=0.219  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a   92 (97)
T 2xnq_A           58 AFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS   92 (97)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            479999999999999998 9999999999999754

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.94  E-value=0.064  Score=38.92  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=31.5

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        52 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a   86 (99)
T 2cpj_A           52 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA   86 (99)
T ss_dssp             TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence            47999999999999999 89999999999999755

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=92.86  E-value=0.097  Score=38.56  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        68 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  103 (110)
T 1oo0_B           68 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC  103 (110)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence            3589999999999999998 9999999999999754

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=92.79  E-value=0.076  Score=41.31  Aligned_cols=34  Identities=18%  Similarity=0.355  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus        89 G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a  123 (129)
T 2kxn_B           89 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS  123 (129)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            489999999999999998 9999999999999644

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=92.79  E-value=0.085  Score=38.51  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        65 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  100 (106)
T 1p27_B           65 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC  100 (106)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred             eeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence            3579999999999999997 9999999999999754

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=92.76  E-value=0.061  Score=39.61  Aligned_cols=34  Identities=12%  Similarity=0.142  Sum_probs=30.8

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecC-ceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVD-LSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d-~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ -|+|..|.| ..|.|..+
T Consensus        55 G~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a   90 (100)
T 3ns6_A           55 GFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM   90 (100)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred             eEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence            47999999999999999 699999999 99999754

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.71  E-value=0.096  Score=37.42  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             eEEEEEEeccchhhHHhh-ccC-CeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSG-ATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsG-AtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+| ..|.|..|.|..+
T Consensus        45 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a   80 (93)
T 2cqh_A           45 GYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS   80 (93)
T ss_dssp             TEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence            479999999999999996 999 9999999999865

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.69  E-value=0.077  Score=38.33  Aligned_cols=34  Identities=21%  Similarity=0.489  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeec--CceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIV--DLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~--d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.  |..|.|..+
T Consensus        54 g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a   90 (97)
T 1why_A           54 SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA   90 (97)
T ss_dssp             CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence            379999999999999998 9999999  999999754

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=92.69  E-value=0.084  Score=40.69  Aligned_cols=35  Identities=9%  Similarity=0.051  Sum_probs=31.8

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ -|||..|.|..|.|..+
T Consensus        67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a  102 (111)
T 2jvr_A           67 DGTGALEFPSEEILVEALERLNNIEFRGSVITVERD  102 (111)
T ss_dssp             SCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            347999999999999999 69999999999999765

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.57  E-value=0.081  Score=38.15  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCce----EEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLS----VSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~----V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..    |.|..+
T Consensus        53 g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a   91 (99)
T 2div_A           53 GYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA   91 (99)
T ss_dssp             EEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEET
T ss_pred             CEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeec
Confidence            479999999999999998 9999999999    888644

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=92.44  E-value=0.16  Score=38.47  Aligned_cols=36  Identities=19%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   84 (116)
T 2fy1_A           48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK   84 (116)
T ss_dssp             CCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred             ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            3589999999999999995 99999999999998654

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=92.38  E-value=0.14  Score=38.14  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEec
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISL   41 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~   41 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..
T Consensus        82 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~  116 (118)
T 2khc_A           82 KCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL  116 (118)
T ss_dssp             CCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred             CcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence            3589999999999999997 999999999999864

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=92.37  E-value=0.098  Score=37.46  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   86 (97)
T 1nu4_A           52 GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA   86 (97)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             cEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            479999999999999996 8999999999999754

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=92.29  E-value=0.077  Score=42.30  Aligned_cols=34  Identities=9%  Similarity=0.074  Sum_probs=31.8

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      -.|||+|+++..++.||-|+|..|.+..|.|..+
T Consensus        89 G~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a  122 (136)
T 2hgl_A           89 GEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS  122 (136)
T ss_dssp             EEEEEECSSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred             eEEEEEECCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence            4899999999999999999999999999999754

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.28  E-value=0.062  Score=40.45  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.||-++|..|.|..|.|...
T Consensus        52 rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~   86 (103)
T 1s79_A           52 KGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK   86 (103)
T ss_dssp             CCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred             ccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            35799999999999999999999999999999754

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=92.24  E-value=0.086  Score=41.42  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCCC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD   44 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~~   44 (246)
                      ..|+|+|+++..++.||- |+|..|.|..|.|..+..
T Consensus        82 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  118 (156)
T 1h2v_Z           82 GFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG  118 (156)
T ss_dssp             EEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            589999999999999998 899999999999986543

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.20  E-value=0.081  Score=36.99  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=29.6

Q ss_pred             eEEEEEEeccchhhHHhh-c-cCCeecCceEEEec
Q 025931            9 QIAYVTFKDMQGAETAVL-L-SGATIVDLSVSISL   41 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-L-sGAtL~d~~V~It~   41 (246)
                      ..|+|+|+++..++.|+- | +|..|.|..|.|..
T Consensus        49 g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~   83 (85)
T 2ytc_A           49 QCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW   83 (85)
T ss_dssp             TEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence            479999999999999996 5 99999999998864

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=92.20  E-value=0.057  Score=39.17  Aligned_cols=34  Identities=12%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   80 (96)
T 2kvi_A           46 AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS   80 (96)
T ss_dssp             TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence            379999999999999998 9999999999999754

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=92.07  E-value=0.11  Score=39.50  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..|+.|+- |||..|.|..|.|.-+
T Consensus        49 G~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a   83 (110)
T 3s8s_A           49 GLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD   83 (110)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            479999999999999995 9999999999999754

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.90  E-value=0.15  Score=37.67  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        68 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a  102 (115)
T 2cpx_A           68 GQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG  102 (115)
T ss_dssp             SEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence            589999999999999995 9999999999999865

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=91.79  E-value=0.12  Score=39.67  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=32.3

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        84 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~  120 (139)
T 1u6f_A           84 RGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA  120 (139)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            3479999999999999998 99999999999998653

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=91.65  E-value=0.29  Score=35.53  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             ceEEEEEEeccchhhHHhh-c-cCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-L-SGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-L-sGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.||- | +|..|.|..|.|..+
T Consensus        58 ~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a   94 (107)
T 2cph_A           58 RGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA   94 (107)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred             CceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence            4589999999999999995 6 899999999999865

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=91.30  E-value=0.14  Score=39.88  Aligned_cols=36  Identities=19%  Similarity=0.402  Sum_probs=33.0

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD   44 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~   44 (246)
                      ..|+|+|+++..++.||-|+|..|.|..|.|..+..
T Consensus        55 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~   90 (175)
T 1fje_B           55 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG   90 (175)
T ss_dssp             TEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred             cEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence            589999999999999999999999999999986643

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=91.27  E-value=0.064  Score=38.93  Aligned_cols=36  Identities=36%  Similarity=0.527  Sum_probs=32.5

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        37 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   73 (101)
T 2hvz_A           37 PGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST   73 (101)
T ss_dssp             SSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred             CCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence            4579999999999999998 99999999999998653

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.22  E-value=0.19  Score=38.72  Aligned_cols=32  Identities=25%  Similarity=0.462  Sum_probs=30.4

Q ss_pred             EEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931           11 AYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus        11 A~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      +.|||++.+++..|+=|||..|.|..|+|...
T Consensus        52 ~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lk   83 (91)
T 2dnr_A           52 MWVTFLEGSSALNVLSLNGKELLNRTITIALK   83 (91)
T ss_dssp             EEEEESSHHHHHHGGGGTTCEETTEEEEEEEC
T ss_pred             EEEEECChHHHHHHHhcCCeEeCCeEEEEEeC
Confidence            89999999999999999999999999999854

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=91.12  E-value=0.25  Score=38.45  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus       113 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a  147 (158)
T 2kn4_A          113 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA  147 (158)
T ss_dssp             CEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence            479999999999999995 9999999999999865

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=91.09  E-value=0.14  Score=38.41  Aligned_cols=34  Identities=18%  Similarity=0.441  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|++...++.|+- |+|..|.|..|.|..+
T Consensus        66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  100 (108)
T 2jvo_A           66 GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS  100 (108)
T ss_dssp             TEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence            369999999999999996 9999999999999754

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=91.04  E-value=0.13  Score=38.92  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=30.2

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCce-----EEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLS-----VSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~-----V~It~~   42 (246)
                      ..|+|+|+++..++.||- |||..|.|..     |.|...
T Consensus        52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~   91 (115)
T 3beg_B           52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD   91 (115)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence            579999999999999998 9999999988     777644

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.93  E-value=0.15  Score=38.21  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus        64 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a   99 (112)
T 2dit_A           64 DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW   99 (112)
T ss_dssp             TCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred             CEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence            357999999999999999 79999999999999854

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=90.83  E-value=0.12  Score=40.81  Aligned_cols=35  Identities=23%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++..++.||-++|..|+|..|.|.++
T Consensus        84 rGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a  118 (126)
T 2hgm_A           84 TGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS  118 (126)
T ss_dssp             CSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred             ceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence            45899999999999999999999999999988654

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=90.72  E-value=0.18  Score=39.32  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus        90 G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a  124 (135)
T 2lea_A           90 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA  124 (135)
T ss_dssp             SCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            379999999999999995 9999999999999865

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=90.67  E-value=0.097  Score=37.97  Aligned_cols=34  Identities=6%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|++...++.|+ .|+|..|.|..|.|..+
T Consensus        64 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a   98 (101)
T 2la4_A           64 GCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG   98 (101)
T ss_dssp             TEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence            47999999999999999 78999999999998643

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=90.56  E-value=0.31  Score=36.22  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=29.7

Q ss_pred             eEEEEEEeccchhhHHh-hccCC----eecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGA----TIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGA----tL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|| .|+|.    .|+|..|.|.-+
T Consensus        54 G~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A   92 (95)
T 2lkz_A           54 GFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA   92 (95)
T ss_dssp             SEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred             eEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence            37999999999999999 58887    599999999755

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.53  E-value=0.36  Score=35.84  Aligned_cols=35  Identities=26%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.||-..+..|.|..|.|..+.
T Consensus        60 g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~   94 (116)
T 2cqd_A           60 GYGFVTMADRAAAERACKDPNPIIDGRKANVNLAY   94 (116)
T ss_dssp             SEEEEEESSHHHHHHHHTCSSCEETTEECEEEEST
T ss_pred             eEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcc
Confidence            38999999999999999765559999999998653

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=90.52  E-value=0.26  Score=35.84  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCee---cCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATI---VDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL---~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+|..|   .+..|.|..+.
T Consensus        55 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~   94 (106)
T 2dgp_A           55 KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD   94 (106)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred             ceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence            3489999999999999995 999998   88999998653

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.50  E-value=0.56  Score=33.95  Aligned_cols=34  Identities=12%  Similarity=0.129  Sum_probs=30.2

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.||- ++..|.|..|.|..+.
T Consensus        58 g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~   91 (103)
T 2cqg_A           58 GFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPN   91 (103)
T ss_dssp             EEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCC
T ss_pred             ceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecC
Confidence            379999999999999998 7889999999998653

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.35  E-value=0.13  Score=38.64  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=30.7

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      .|+|+|++...++.|+- |+|..|.|..|.|.-+.
T Consensus        48 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   82 (111)
T 1whx_A           48 TAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP   82 (111)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            69999999999999995 99999999999997543

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.31  E-value=0.34  Score=35.41  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             ceEEEEEEeccchhhHHhh-cc------CCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LS------GATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-Ls------GAtL~d~~V~It~~   42 (246)
                      ...|||+|++...++.||- |+      |..|.|..|.|..+
T Consensus        57 ~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a   98 (111)
T 1x4h_A           57 KGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA   98 (111)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred             ccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEEC
Confidence            4589999999999999996 88      99999999999755

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.12  E-value=0.11  Score=37.76  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=31.7

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCe-ecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGAT-IVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAt-L~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.||- |+|.. |.|..|.|..+
T Consensus        51 ~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a   87 (104)
T 2dhg_A           51 KGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA   87 (104)
T ss_dssp             EEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred             cceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence            3579999999999999998 99999 99999999755

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=90.03  E-value=0.25  Score=35.90  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecC---ceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVD---LSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d---~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |+|..|.+   ..|.|..+
T Consensus        56 ~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a   94 (105)
T 2dnh_A           56 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA   94 (105)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred             CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence            3589999999999999995 99999998   89999755

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.94  E-value=0.29  Score=35.76  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=31.0

Q ss_pred             ceEEEEEEeccchhhHHhh-cc--CCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LS--GATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-Ls--GAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+  +..|.|..|.|..+.
T Consensus        52 ~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~   90 (109)
T 2dis_A           52 RGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE   90 (109)
T ss_dssp             CCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred             CcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence            4589999999999999998 64  489999999998653

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=89.94  E-value=0.065  Score=42.98  Aligned_cols=34  Identities=21%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      -.|||+|+++..++.||-|++..|.+..|.|..+
T Consensus        87 GfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a  120 (139)
T 2hgn_A           87 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLN  120 (139)
T ss_dssp             CCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred             eEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence            4799999999999999999999999999999755

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=89.93  E-value=0.22  Score=37.15  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||-..|..|.|..|.|..+
T Consensus        68 g~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a  101 (109)
T 2rs2_A           68 GFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA  101 (109)
T ss_dssp             TCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred             cEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence            4899999999999999999999999999999754

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=89.60  E-value=0.21  Score=39.82  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus       114 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  149 (165)
T 1rk8_A          114 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC  149 (165)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            3589999999999999996 9999999999999754

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=89.55  E-value=0.33  Score=36.81  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|....
T Consensus        45 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~   80 (167)
T 1fxl_A           45 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR   80 (167)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence            579999999999999996 99999999999997653

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=89.49  E-value=0.23  Score=38.97  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..|+.|+ -|||..|.|..|.|.-+
T Consensus        73 G~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a  107 (127)
T 2a3j_A           73 GKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS  107 (127)
T ss_dssp             CCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence            47999999999999999 69999999999999744

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=89.44  E-value=0.2  Score=41.21  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- |||..|.|..|.|..+
T Consensus       143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a  178 (213)
T 4f02_A          143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF  178 (213)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            3479999999999999994 9999999999999754

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=88.97  E-value=0.069  Score=39.94  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a   92 (116)
T 2lcw_A           58 GEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA   92 (116)
Confidence            479999999999999998 9999999999999754

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=89.35  E-value=0.21  Score=37.67  Aligned_cols=35  Identities=26%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...+||+|+++..|+.|+- |||..+.|..|.|.-+
T Consensus        68 ~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           68 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             cEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            4589999999999999996 9999999999998643

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=89.30  E-value=0.18  Score=38.92  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=32.1

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|.++..+..|+- |+|..|.|..|.|..+
T Consensus        92 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a  127 (143)
T 3egn_A           92 KGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA  127 (143)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred             ccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence            3589999999999999998 9999999999999755

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=89.18  E-value=0.24  Score=37.44  Aligned_cols=35  Identities=17%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...+||+|+++..|..|+ -|||-.+.|..|.|.-+
T Consensus        59 ~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~   94 (105)
T 3v4m_A           59 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYC   94 (105)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             cEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEe
Confidence            357999999999999998 79999999999999743

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=89.15  E-value=0.32  Score=41.04  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=32.2

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   87 (282)
T 3pgw_A           52 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA   87 (282)
T ss_pred             ceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence            358999999999999999 99999999999999754

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.13  E-value=0.076  Score=37.24  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=29.1

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEe
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSIS   40 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It   40 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..+.+.
T Consensus        48 g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~   80 (85)
T 1x4e_A           48 GYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS   80 (85)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred             cEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence            479999999999999998 99999999988774

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=89.03  E-value=0.4  Score=36.64  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=31.7

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus        46 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~   81 (168)
T 1b7f_A           46 GYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   81 (168)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             eEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence            47999999999999999 599999999999998553

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.00  E-value=0.12  Score=40.43  Aligned_cols=35  Identities=17%  Similarity=0.060  Sum_probs=31.6

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++..++.||-++|..|++..|.|..+
T Consensus        68 ~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a  102 (123)
T 2dha_A           68 TGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS  102 (123)
T ss_dssp             EEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred             eeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence            35899999999999999999999999999988654

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=88.93  E-value=0.35  Score=32.92  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      ...|+|+|+++..++.|+-..+..|.|..|.|..
T Consensus        42 ~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~   75 (77)
T 1uaw_A           42 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV   75 (77)
T ss_dssp             SSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEE
T ss_pred             CceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEe
Confidence            3589999999999999998777999999999864

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=88.21  E-value=0.35  Score=34.98  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=30.3

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+- +|..|.|..|.|..+
T Consensus        50 ~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a   83 (102)
T 2xs2_A           50 KGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA   83 (102)
T ss_dssp             EEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred             cceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence            3589999999999999999 999999999998643

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.19  E-value=0.33  Score=37.71  Aligned_cols=31  Identities=29%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             EEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931           11 AYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus        11 A~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      +.|||.+.+.|..|+=|+|..|.|..|+|..
T Consensus        61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~   91 (95)
T 1ufw_A           61 MLVTFADSHSALSVLDVDGMKVKGRAVKISG   91 (95)
T ss_dssp             EEEECSCSHHHHHHHHGGGSEETTEEEEEEC
T ss_pred             EEEEEcChHHHHHHHhcCCeeeCCeEEEEec
Confidence            8999999999999999999999999999974

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=88.05  E-value=0.36  Score=36.54  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...+||+|+++..|.-|+- |||..+.|..|.|.-+
T Consensus        56 ~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a   91 (105)
T 2pe8_A           56 AVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY   91 (105)
T ss_dssp             SEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             cEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence            4589999999999999995 9999999999999755

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=87.61  E-value=0.37  Score=41.08  Aligned_cols=34  Identities=9%  Similarity=0.038  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|||+|++...++.||- |+|..|.|..|.|..+
T Consensus       113 GfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a  147 (229)
T 3q2s_C          113 GFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV  147 (229)
T ss_dssp             EEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence            379999999999999998 9999999999999754

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=87.49  E-value=0.51  Score=37.94  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||- |+|..|.|..|.|..+
T Consensus       100 GfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a  134 (156)
T 3n9u_C          100 GYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA  134 (156)
T ss_dssp             EEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence            379999999999999985 5999999999999755

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=87.41  E-value=0.33  Score=45.50  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      -..|||+|+++..+..|| .|||..|.|..|.|..+
T Consensus       144 kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a  179 (437)
T 3pgw_S          144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE  179 (437)
T ss_pred             cceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            347999999999999999 89999999999999754

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=87.25  E-value=0.52  Score=39.97  Aligned_cols=38  Identities=16%  Similarity=0.178  Sum_probs=34.4

Q ss_pred             CceEEEEEEeccchhhHHhhccCCeecCceEEEecCCC
Q 025931            7 WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD   44 (246)
Q Consensus         7 ~sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~   44 (246)
                      ....|+|+|.++..++.||-|+|..|.|..|.|.....
T Consensus        80 ~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~  117 (292)
T 2ghp_A           80 NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTE  117 (292)
T ss_dssp             SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCS
T ss_pred             CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCC
Confidence            45799999999999999999999999999999987643

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=86.57  E-value=0.74  Score=36.13  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=32.7

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD   44 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~   44 (246)
                      ..|+|+|.++..++.||-++|..|.|..|.|..+..
T Consensus        56 g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~   91 (196)
T 1l3k_A           56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS   91 (196)
T ss_dssp             EEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred             ceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence            489999999999999999999999999999986533

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=86.49  E-value=0.42  Score=39.81  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..|+.|+- |||..|.|..|.|..+
T Consensus        43 g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s   77 (205)
T 3tyt_A           43 GAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS   77 (205)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence            469999999999999995 9999999999999854

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=86.09  E-value=0.57  Score=37.37  Aligned_cols=36  Identities=11%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             CceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            7 WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         7 ~sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ....|+|+|+++..++.||- |+|..|.|..|.|...
T Consensus        69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~  105 (216)
T 2qfj_A           69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP  105 (216)
T ss_dssp             CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred             cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence            34579999999999999998 9999999999999643

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=85.11  E-value=0.66  Score=39.12  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|.++..+..|+. |+|..|.|..|.|.-+
T Consensus       226 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a  261 (284)
T 3smz_A          226 KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC  261 (284)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence            4689999999999999999 9999999999999755

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=84.26  E-value=0.47  Score=37.79  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      .|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        43 ~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~   77 (198)
T 1qm9_A           43 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK   77 (198)
T ss_dssp             CCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence            59999999999999996 99999999999997553

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=83.74  E-value=0.62  Score=38.62  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP   43 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~   43 (246)
                      .|+|+|.++..++.|+ .|+|..|.|..|.|..+.
T Consensus        74 ~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~  108 (229)
T 2adc_A           74 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK  108 (229)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence            5999999999999999 599999999999998553

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.62  E-value=1.1  Score=34.70  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|.+...|+.|+- |+|..|.|.+|+|.-+
T Consensus        47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A   81 (96)
T 2diu_A           47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT   81 (96)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence            469999999999999995 9999999999999755

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.54  E-value=0.76  Score=33.82  Aligned_cols=33  Identities=9%  Similarity=0.222  Sum_probs=28.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCee--------cCceEEEec
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATI--------VDLSVSISL   41 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL--------~d~~V~It~   41 (246)
                      ..|+|+|+++..++.|+- |+|..|        .+.+|.|.-
T Consensus        67 g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~  108 (114)
T 1x5o_A           67 GVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF  108 (114)
T ss_dssp             EEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEc
Confidence            479999999999999998 999999        466677753

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=83.32  E-value=0.64  Score=35.98  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..+||+|+++..|+.|+ -|||-.++|..|.|.-+
T Consensus        56 G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~   90 (114)
T 3s6e_A           56 GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV   90 (114)
T ss_dssp             CCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             EEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence            46999999999999998 59999999999999743

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=80.62  E-value=0.99  Score=38.21  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=31.8

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|.++..++.|+- |+|..|.|..|.|..+.
T Consensus        59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~   94 (261)
T 3sde_A           59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT   94 (261)
T ss_dssp             TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence            479999999999999997 99999999999998653

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=80.52  E-value=1.1  Score=33.59  Aligned_cols=34  Identities=15%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             eEEEEEEeccchhhHHhh---ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL---LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL---LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..|+.|+-   .++..|.|..|.|.-+
T Consensus        52 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a   88 (101)
T 2cq1_A           52 NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS   88 (101)
T ss_dssp             TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence            469999999999999985   3678999999999754

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=80.04  E-value=1  Score=34.91  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      -.+||+|+++..|..|+ -|||-.++|..|.|.-+
T Consensus        72 G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~  106 (118)
T 3ue2_A           72 VKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY  106 (118)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             EEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence            47999999999999998 59999999999999744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.07
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.59
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	95.66
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	95.54
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	95.46
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	95.44
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	95.38
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	95.33
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	95.25
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	95.19
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	95.18
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	95.12
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	95.07
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	95.05
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	95.02
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	95.02
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	94.88
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	94.85
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	94.82
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	94.81
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	94.8
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	94.76
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	94.67
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	94.53
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	94.41
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	94.2
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	94.15
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	94.12
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	94.01
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	94.01
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	93.97
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	93.96
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	93.96
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	93.96
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	93.82
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	93.77
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	93.76
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	93.76
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	93.64
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	93.54
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	93.43
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	93.24
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	93.24
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	93.17
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	92.99
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	92.93
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	92.91
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	92.75
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	92.73
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	92.47
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	92.43
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	92.1
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	91.84
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	91.72
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	91.51
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	91.38
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	91.38
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	91.2
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	91.17
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	91.15
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	90.96
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	90.88
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	90.75
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	90.74
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	90.27
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	90.24
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	89.74
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	88.54
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	87.66
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	87.34
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	86.86
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	85.59
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	85.51
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	84.08
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	82.94
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	82.4
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	81.48

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00021  Score=49.79  Aligned_cols=39  Identities=15%  Similarity=0.133  Sum_probs=34.8

Q ss_pred             CCCCceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            4 DNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         4 ~~e~sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      .++..+.|+|+|+++.+++.||.|+|..|+|+.|.|...
T Consensus        36 ~~~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2          36 LKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             TTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred             ccccceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEEC
Confidence            345567999999999999999999999999999999754

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00051  Score=48.70  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=37.1

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCCCCCCCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLPP   49 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~~~~~   49 (246)
                      ..|+|+|.++.+++.|+-|||..|.|..|.|...-+|.++|
T Consensus        49 g~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r~k~~~p~p   89 (90)
T d1u2fa_          49 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLP   89 (90)
T ss_dssp             TEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBCTTCCSCCC
T ss_pred             eEEEEEeCCHHHHHHHHhhCCcEECCEEEEECCCCCCCCcc
Confidence            47999999999999999999999999999998777777665

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0053  Score=41.94  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|.++.+++-||-|+|..|.|..|.|..+
T Consensus        45 g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2          45 GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             EEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred             cEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            4799999999999999999999999999999643

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0045  Score=41.72  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=32.1

Q ss_pred             CceEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931            7 WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus         7 ~sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      ....|+|+|+++.+++.||-|+|-.|.|..|+|..
T Consensus        40 ~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~   74 (75)
T d2msta_          40 HRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK   74 (75)
T ss_dssp             SCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEE
T ss_pred             cCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEE
Confidence            45689999999999999999999999999999964

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.0067  Score=42.53  Aligned_cols=33  Identities=27%  Similarity=0.465  Sum_probs=31.2

Q ss_pred             EEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      .|+|+|++...++.||=|||..|.|..|.|..+
T Consensus        50 ~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a   82 (86)
T d2ghpa3          50 CAFMVFENKDSAERALQMNRSLLGNREISVSLA   82 (86)
T ss_dssp             EEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred             eeeEEECCHHHHHHHHhcCCCEECCEEEEEEEc
Confidence            799999999999999999999999999999754

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.011  Score=42.29  Aligned_cols=35  Identities=20%  Similarity=0.159  Sum_probs=32.0

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEecCCC
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD   44 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~~   44 (246)
                      .|||+|+++..++.||. |+|..|.|+.|+|..+..
T Consensus        52 ~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~   87 (99)
T d1whwa_          52 FAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI   87 (99)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred             ceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            79999999999999995 999999999999987643

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0089  Score=42.89  Aligned_cols=33  Identities=18%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             EEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      .|||+|.++.+++.|+-|+|..|.|..|.|..+
T Consensus        59 ~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a   91 (104)
T d1wi8a_          59 FGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA   91 (104)
T ss_dssp             CEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred             eeeEEECCHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            899999999999999999999999999999765

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0077  Score=42.22  Aligned_cols=39  Identities=13%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             CCCCce-EEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            4 DNEWTQ-IAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         4 ~~e~sq-tA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      .++.++ .|||+|.++..++.||-++|-.|.|+.|.|..+
T Consensus        43 ~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A   82 (84)
T d1l3ka1          43 NTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA   82 (84)
T ss_dssp             TTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred             cCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEee
Confidence            345555 999999999999999999999999999999654

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.006  Score=42.33  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|.++..++.||-+++..|.|..|.|..+
T Consensus        43 G~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_          43 GFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             SEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             ceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            4899999999999999999999999999998653

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.009  Score=41.20  Aligned_cols=38  Identities=26%  Similarity=0.299  Sum_probs=33.2

Q ss_pred             CCCc-eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            5 NEWT-QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         5 ~e~s-qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ++.+ ..|+|+|.++..++.|+ -|+|..|.|..|.|..+
T Consensus        38 tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a   77 (80)
T d1cvja1          38 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS   77 (80)
T ss_dssp             TCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEEC
T ss_pred             ccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            3443 58999999999999999 79999999999999755

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0089  Score=41.39  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=30.5

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      -|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus        45 ~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a   78 (85)
T d2cpfa1          45 FGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS   78 (85)
T ss_dssp             EEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            5999999999999999 69999999999999754

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0067  Score=42.71  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus        48 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a   83 (89)
T d1cvja2          48 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF   83 (89)
T ss_dssp             CSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEEC
T ss_pred             cceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            358999999999999999 69999999999999765

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.01  Score=42.04  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEe
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSIS   40 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It   40 (246)
                      ..|||+|+++..|+.|+- |||..|.|..|.++
T Consensus        57 g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          57 ASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             eEEEEecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            579999999999999994 99999999999874

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.0079  Score=42.62  Aligned_cols=36  Identities=8%  Similarity=0.081  Sum_probs=31.5

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCce-EEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLS-VSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~-V~It~~~   43 (246)
                      ...++|+|+++..++.||-|||..|+|+. |.|.|+.
T Consensus        39 ~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~   75 (81)
T d1wwha1          39 GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI   75 (81)
T ss_dssp             SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred             CCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCC
Confidence            35799999999999999999999999984 6788763

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.011  Score=40.77  Aligned_cols=34  Identities=18%  Similarity=0.510  Sum_probs=31.4

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      .-|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus        42 g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a   76 (83)
T d1x5ta1          42 GYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA   76 (83)
T ss_dssp             SEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred             ceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEe
Confidence            47999999999999999 69999999999999865

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.02  E-value=0.0081  Score=41.24  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      .-|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus        45 g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a   79 (82)
T d1b7fa1          45 GYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA   79 (82)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            36999999999999999 79999999999999754

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.011  Score=40.75  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             CCce-EEEEEEeccchhhHHh-hccCCeecCceEEE
Q 025931            6 EWTQ-IAYVTFKDMQGAETAV-LLSGATIVDLSVSI   39 (246)
Q Consensus         6 e~sq-tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~I   39 (246)
                      +.++ .|+|+|+++..|+.|+ -|+|..|.|..|+|
T Consensus        48 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          48 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             cccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            4433 7999999999999999 59999999999987

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0086  Score=43.02  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=32.6

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ...|||+|+++..++.||-|+|..|.|..|.|.+.
T Consensus        50 ~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~   84 (103)
T d2cpya1          50 LGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV   84 (103)
T ss_dssp             SSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred             CccEEEEECCHHHHHHHHhcCCCeECCcEEEEEEC
Confidence            55899999999999999999999999999999764

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.82  E-value=0.012  Score=41.32  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEec
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISL   41 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~   41 (246)
                      .|+|+|+++..|+.|+. |||..|.|+.|.|.-
T Consensus        51 ~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~   83 (88)
T d1rk8a_          51 YALVEYETHKQALAAKEALNGAEIMGQTIQVDW   83 (88)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             ceeEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            59999999999999995 999999999999963

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.013  Score=42.37  Aligned_cols=39  Identities=15%  Similarity=0.349  Sum_probs=33.3

Q ss_pred             CCCCce-EEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            4 DNEWTQ-IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         4 ~~e~sq-tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      .++.++ .|+|+|+++..++.|| -|+|..|.|..|.|..+
T Consensus        55 ~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a   95 (102)
T d2cpza1          55 QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK   95 (102)
T ss_dssp             SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             ccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            344444 7999999999999999 59999999999999754

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0087  Score=43.58  Aligned_cols=33  Identities=27%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      ..|||+|+++.++.-||-|+|..|.|..|.|..
T Consensus        61 G~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~   93 (101)
T d2cq4a1          61 GIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA   93 (101)
T ss_dssp             CCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred             ceEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence            389999999999999999999999999999974

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.76  E-value=0.012  Score=40.38  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|+.|.|.-+
T Consensus        42 g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a   76 (78)
T d1no8a_          42 GTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV   76 (78)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             eeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            489999999999999995 9999999999999754

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.014  Score=40.47  Aligned_cols=34  Identities=32%  Similarity=0.359  Sum_probs=31.0

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEec
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISL   41 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~   41 (246)
                      ...|+|.|+++..++.|+. |+|..|.|..|.|+.
T Consensus        51 ~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l   85 (86)
T d2cqpa1          51 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL   85 (86)
T ss_dssp             EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             ceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEE
Confidence            3489999999999999996 999999999999974

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=94.53  E-value=0.011  Score=42.17  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.||-|+|..|.|..|.|..+
T Consensus        55 g~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~a   88 (91)
T d1fjeb1          55 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP   88 (91)
T ss_dssp             TEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred             EEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEec
Confidence            4899999999999999999999999999999754

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.015  Score=41.26  Aligned_cols=38  Identities=16%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             CCCce-EEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            5 NEWTQ-IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         5 ~e~sq-tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ++.++ -|+|+|.++..++.|+ .|+|..|.|..|.|..+
T Consensus        47 tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A   86 (93)
T d1x5ua1          47 TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA   86 (93)
T ss_dssp             SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred             ccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            34444 7999999999999999 69999999999999765

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.03  Score=39.22  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      .|+|+|++...++-|+. |+|..|.|..|.|..+
T Consensus        52 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~a   85 (90)
T d2cq0a1          52 FAFISFHRREDAARAIAGVSGFGYDHLILNVEWA   85 (90)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             ceeEEECCHHHHHHHHHHhCCCEECCEEEEEEee
Confidence            69999999999999997 9999999999999754

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.018  Score=39.30  Aligned_cols=34  Identities=9%  Similarity=0.151  Sum_probs=31.0

Q ss_pred             ceEEEEEEeccchhhHHhhccCCeecCceEEEec
Q 025931            8 TQIAYVTFKDMQGAETAVLLSGATIVDLSVSISL   41 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~   41 (246)
                      ...|+|+|.++.+++.||=++|..|.|..|.|..
T Consensus        41 kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~r   74 (75)
T d1hd0a_          41 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR   74 (75)
T ss_dssp             CSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECC
T ss_pred             CceEEEEECCHHHHHHHHhcCCCEECCCEEEeeE
Confidence            3579999999999999999999999999999854

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.015  Score=42.66  Aligned_cols=36  Identities=11%  Similarity=0.096  Sum_probs=32.6

Q ss_pred             CceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            7 WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         7 ~sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ....|||.|.++..++-||-|||..|+|..|.|.++
T Consensus        59 ~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~   94 (112)
T d1wela1          59 ATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI   94 (112)
T ss_dssp             EEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred             eeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEc
Confidence            345899999999999999999999999999999754

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.01  E-value=0.019  Score=39.32  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|.++.+++.|+ .|+|..|.|..|.|.-+
T Consensus        43 ~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a   78 (81)
T d2ghpa1          43 RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS   78 (81)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             cceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            347999999999999999 59999999999999743

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.015  Score=41.81  Aligned_cols=36  Identities=25%  Similarity=0.140  Sum_probs=32.6

Q ss_pred             CceEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            7 WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         7 ~sqtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ....|||+|+++..++-||=|||..|.|..|.|...
T Consensus        54 ~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s   89 (102)
T d1weza_          54 VTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN   89 (102)
T ss_dssp             EEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred             ceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            356899999999999999999999999999999643

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.033  Score=39.25  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=32.3

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecCC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP   43 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~~   43 (246)
                      ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus        58 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~   94 (101)
T d2cpea1          58 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR   94 (101)
T ss_dssp             CSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred             cceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            3579999999999999995 99999999999998663

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.031  Score=40.22  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      .-|||+|+++..|+.|+- |||..|.|..|.|..+
T Consensus        51 g~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a   85 (98)
T d1wf2a_          51 GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLA   85 (98)
T ss_dssp             EEEEEEESSHHHHHHHHHTTTTCEETTEECEEEET
T ss_pred             CeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            369999999999999994 9999999999999865

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.029  Score=39.68  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=30.3

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      .|+|+|+++..++.|+ .|||..|.|..|.|.-+
T Consensus        51 ~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a   84 (93)
T d1h2vz_          51 FCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD   84 (93)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            7999999999999999 59999999999999643

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.022  Score=40.38  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            6 EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         6 e~sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      .....|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus        51 ~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a   88 (95)
T d1x4aa1          51 GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP   88 (95)
T ss_dssp             SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence            334579999999999999995 9999999999999754

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.019  Score=41.14  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      .|||+|.+...++.|+ -|+|..|.|..|.|..+
T Consensus        52 ~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a   85 (104)
T d1p1ta_          52 YGFCEYQDQETALSAMRNLNGREFSGRALRVDNA   85 (104)
T ss_dssp             EEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred             ceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            6999999999999999 58999999999999764

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.022  Score=39.92  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus        48 g~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a   82 (89)
T d2cqba1          48 GFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   82 (89)
T ss_dssp             SEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             ceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            37999999999999999 58999999999999755

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.018  Score=40.34  Aligned_cols=33  Identities=39%  Similarity=0.359  Sum_probs=29.7

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      .-|+|+|+++.+++.||. ++-.|.|..|.|..+
T Consensus        43 gfafV~f~~~~~a~~a~~-~~~~i~g~~l~v~~a   75 (88)
T d1wf0a_          43 AFAFVTFADDQIAQSLCG-EDLIIKGISVHISNA   75 (88)
T ss_dssp             SCCEEECSCHHHHHHTTT-CEEEETTEEEEEECC
T ss_pred             ceEEEEECCHHHHHHHHh-CCCEECCEEeEEEeC
Confidence            469999999999999976 899999999999865

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.76  E-value=0.045  Score=40.97  Aligned_cols=33  Identities=27%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             EEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      .|+|+|.+...++.||. |||..|.|..|.|..+
T Consensus        86 ~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a  119 (139)
T d1u6fa1          86 YGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             eeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            69999999999999995 9999999999999765

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.03  Score=39.58  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             CceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            7 WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         7 ~sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ....|+|+|+++..++.|| -|+|..|.|..|.|..+
T Consensus        50 ~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A   86 (93)
T d2cq3a1          50 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA   86 (93)
T ss_dssp             TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            3457999999999999999 69999999999999765

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.041  Score=39.50  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=31.9

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|||+|+++..++-||-|+|..|.+..|.|.++
T Consensus        58 G~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~   91 (104)
T d1wg5a_          58 GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS   91 (104)
T ss_dssp             SEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred             eEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEEC
Confidence            4799999999999999999999999999999765

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.028  Score=38.27  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|.++..++.|+. |+|..|.|..|.|.-+
T Consensus        45 g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~A   79 (82)
T d1fxla1          45 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA   79 (82)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             eeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            369999999999999994 9999999999999754

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.027  Score=40.77  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|.+...|+.|+ -|+|..|.|..|.|..+
T Consensus        47 G~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   81 (114)
T d2f9da1          47 GTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYY   81 (114)
T ss_dssp             TEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            37999999999999999 69999999999999754

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.047  Score=37.95  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..-|+|+|.++..+..|+- |+|..|.|+.|.|..+
T Consensus        43 rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A   78 (85)
T d2u2fa_          43 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA   78 (85)
T ss_dssp             CCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEEC
T ss_pred             ceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            4589999999999999997 9999999999999865

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.028  Score=39.51  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|||+|+++..+..|+ .|+|..|.|..|+|..+
T Consensus        47 g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~a   81 (91)
T d1nu4a_          47 GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA   81 (91)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            46999999999999999 69999999999999754

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.028  Score=39.08  Aligned_cols=34  Identities=21%  Similarity=0.479  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus        48 g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a   82 (90)
T d1x5sa1          48 GFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA   82 (90)
T ss_dssp             SEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred             ceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            37999999999999999 69999999999999754

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.04  Score=38.64  Aligned_cols=35  Identities=20%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..|+.|+ -|+|..|.|..|.|.-+.
T Consensus        41 g~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~   76 (88)
T d1wg1a_          41 RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP   76 (88)
T ss_dssp             TEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            47999999999999999 799999999999998553

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.028  Score=40.94  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|||+|.++.+++.||-++|-+|.|..|.|..+
T Consensus        63 g~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a   96 (103)
T d1x4ba1          63 GFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA   96 (103)
T ss_dssp             SEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred             CeEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence            5899999999999999999999999999999754

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=92.75  E-value=0.038  Score=39.11  Aligned_cols=35  Identities=37%  Similarity=0.430  Sum_probs=31.5

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|.+...++.|+ .|+|..|.|..|.|..+
T Consensus        53 ~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a   88 (96)
T d1fjca_          53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT   88 (96)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred             ccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            356999999999999999 69999999999999744

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.73  E-value=0.033  Score=38.92  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=31.0

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..++.|+- |+|..|.|..|.|.-+
T Consensus        45 ~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A   79 (86)
T d2cpja1          45 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA   79 (86)
T ss_dssp             TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred             ceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            479999999999999996 8999999999999754

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.061  Score=37.56  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             ceEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|++...|+-|+- |+|..|.|..|.|.-+
T Consensus        48 ~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a   83 (90)
T d2cqia1          48 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA   83 (90)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             ceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            4579999999999999995 9999999999999744

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.039  Score=39.80  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      -.+||+|+++.+|..|+ .|||-.+.|..|.|.-+
T Consensus        58 G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~   92 (99)
T d2dita1          58 GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW   92 (99)
T ss_dssp             CEEEEECSCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred             cEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEe
Confidence            47999999999999999 89999999999999854

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.10  E-value=0.055  Score=36.88  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..|+.|+ -|||..|.|..|.|.-+
T Consensus        33 ~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a   68 (75)
T d1wi6a1          33 KGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQ   68 (75)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred             ceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEe
Confidence            357999999999999998 69999999999999755

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.057  Score=37.58  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=33.2

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecCCCC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY   45 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~~~~   45 (246)
                      ..|+|+|+++..++.||=++|-.+.|+.|.|-...+|
T Consensus        48 G~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~dy   84 (85)
T d1zh5a2          48 GSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY   84 (85)
T ss_dssp             EEEEEEESCHHHHHHHHTCCCCEETTEECEEEEGGGC
T ss_pred             eEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEEcCCC
Confidence            3899999999999999999999999999999765444

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.72  E-value=0.048  Score=38.91  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~~   43 (246)
                      ..|+|+|+++..|.-|+ .|||..|.|..|.|..++
T Consensus        47 g~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~   82 (111)
T d1whxa_          47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP   82 (111)
T ss_dssp             SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred             ceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECC
Confidence            47999999999999999 699999999999997543

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.055  Score=38.59  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEe
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSIS   40 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It   40 (246)
                      ..|+|+|+++..|+.|+ -|+|..|.|..|.|.
T Consensus        55 g~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~   87 (96)
T d1x4ga1          55 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY   87 (96)
T ss_dssp             TEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            36999999999999998 589999999999996

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.058  Score=38.05  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             CceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            7 WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         7 ~sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ....|+|+|.++..|+.|| .|+|..|.|..|.|.-+
T Consensus        59 ~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a   95 (102)
T d2cpxa1          59 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG   95 (102)
T ss_dssp             SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred             ccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            3457999999999999999 79999999999999644

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.051  Score=38.72  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      .|+|+|+++..|..|+ -|+|..|.|..|.|.-+
T Consensus        42 ~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s   75 (109)
T d2adca1          42 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS   75 (109)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            6999999999999999 58999999999999854

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.065  Score=36.92  Aligned_cols=33  Identities=24%  Similarity=0.443  Sum_probs=30.3

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEec
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISL   41 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~   41 (246)
                      ..|||+|.++..+.-|+- |+|..|.|..|.|.-
T Consensus        45 g~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~   78 (86)
T d2cpda1          45 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL   78 (86)
T ss_dssp             SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred             EEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence            379999999999999996 899999999999964

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=0.027  Score=39.29  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=29.4

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEec
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISL   41 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~   41 (246)
                      .|+|+|+++..++.|| -|+|..|.|..|.|..
T Consensus        37 ~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~   69 (87)
T d3begb1          37 TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY   69 (87)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred             eeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeE
Confidence            7999999999999999 6999999999988753

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.085  Score=36.11  Aligned_cols=36  Identities=11%  Similarity=0.105  Sum_probs=31.1

Q ss_pred             CCCc-eEEEEEEeccchhhHHhhccCCeecCceEEEe
Q 025931            5 NEWT-QIAYVTFKDMQGAETAVLLSGATIVDLSVSIS   40 (246)
Q Consensus         5 ~e~s-qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It   40 (246)
                      ++.+ .-|+|+|+++.+++-||-.++-+|.|..|.|.
T Consensus        37 t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk   73 (75)
T d1x0fa1          37 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK   73 (75)
T ss_dssp             TCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEE
T ss_pred             ccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEE
Confidence            3444 36999999999999999999999999999885

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.057  Score=37.10  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             EEEEEEeccchhhHHh-hccCC-eecCceEEEecC
Q 025931           10 IAYVTFKDMQGAETAV-LLSGA-TIVDLSVSISLA   42 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGA-tL~d~~V~It~~   42 (246)
                      -|+|+|.++..++.|+ -|||. .|.|.+|.|..+
T Consensus        39 ~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a   73 (80)
T d2cqha1          39 YAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS   73 (80)
T ss_dssp             EEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred             eEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEc
Confidence            6999999999999999 58996 699999999754

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.078  Score=36.67  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             CCCce-EEEEEEeccchhhHHh-hccCCeecCc--eEEEe
Q 025931            5 NEWTQ-IAYVTFKDMQGAETAV-LLSGATIVDL--SVSIS   40 (246)
Q Consensus         5 ~e~sq-tA~VTFe~~~Aa~TAL-LLsGAtL~d~--~V~It   40 (246)
                      ++.++ -|+|+|+++..++.|+ -|||..|.|.  +|.|.
T Consensus        44 ~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~   83 (85)
T d1fxla2          44 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK   83 (85)
T ss_dssp             TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred             cccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEE
Confidence            34443 7999999999999999 6999999874  47663

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.16  Score=36.35  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|.++..++.||-+.+.+|.|..|.|..+
T Consensus        53 g~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a   86 (103)
T d2cqda1          53 GYGFVTMADRAAAERACKDPNPIIDGRKANVNLA   86 (103)
T ss_dssp             SEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred             CeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence            4799999999999999998888999999999755

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.74  E-value=0.042  Score=39.45  Aligned_cols=32  Identities=16%  Similarity=0.147  Sum_probs=29.8

Q ss_pred             EEEEEEeccchhhHHh-hccCCeecCceEEEec
Q 025931           10 IAYVTFKDMQGAETAV-LLSGATIVDLSVSISL   41 (246)
Q Consensus        10 tA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~   41 (246)
                      .|+|+|.++..++.|| .|||..|.|..|.|..
T Consensus        52 ~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~   84 (98)
T d1wg4a_          52 MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY   84 (98)
T ss_dssp             EEEEEESSHHHHHHHHHHHSSEEEECTTSCEEE
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence            7999999999999999 7999999999998864

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.27  E-value=0.089  Score=37.12  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=30.0

Q ss_pred             eEEEEEEeccchhhHHh--hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV--LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL--LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|.++..|..||  |.+|..|.|..|.|.-+
T Consensus        52 g~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A   87 (94)
T d2cpha1          52 GFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA   87 (94)
T ss_dssp             SEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred             cEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEc
Confidence            37999999999999998  35899999999999754

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.24  E-value=0.11  Score=35.66  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             CCce-EEEEEEeccchhhHHh-hccCCeecC--ceEEEec
Q 025931            6 EWTQ-IAYVTFKDMQGAETAV-LLSGATIVD--LSVSISL   41 (246)
Q Consensus         6 e~sq-tA~VTFe~~~Aa~TAL-LLsGAtL~d--~~V~It~   41 (246)
                      +.++ .|+|+|+++..++.|+ -|+|..+.|  .+|.|.-
T Consensus        45 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2          45 GRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             ccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            4443 7999999999999999 599999976  6788753

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.079  Score=36.16  Aligned_cols=34  Identities=29%  Similarity=0.601  Sum_probs=30.7

Q ss_pred             eEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..+.-|+ -|||..|.|..|+|.-+
T Consensus        40 ~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a   74 (79)
T d2bz2a1          40 NCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA   74 (79)
T ss_dssp             TEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred             CEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            47999999999999999 58999999999999744

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.07  Score=38.07  Aligned_cols=35  Identities=9%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEecC
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA   42 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~~   42 (246)
                      ...|+|+|+++..++.|+ -|||..|.|.++.|.++
T Consensus        59 ~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~   94 (101)
T d1x5oa1          59 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT   94 (101)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred             ccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCC
Confidence            347999999999999999 59999999998888654

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.66  E-value=0.15  Score=35.17  Aligned_cols=34  Identities=15%  Similarity=0.251  Sum_probs=29.3

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeec-CceEEEec
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIV-DLSVSISL   41 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~-d~~V~It~   41 (246)
                      ...|+|+|+++..|..|+ .|+|-.|. |..|.|.-
T Consensus        48 ~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~   83 (88)
T d2adca2          48 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF   83 (88)
T ss_dssp             TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred             cceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEe
Confidence            347999999999999999 69999995 68899963

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.34  E-value=0.39  Score=34.61  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|+++..|..|+- |+|..|.|..|.|.-+
T Consensus        47 ~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a   81 (104)
T d1weya_          47 KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA   81 (104)
T ss_dssp             TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred             CEEEEEECCHHHHHHHHHHhcccccCCCEeEEeec
Confidence            359999999999999996 9999999999999754

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.86  E-value=0.26  Score=35.60  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceEEEec
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISL   41 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V~It~   41 (246)
                      ...+||+|+++..|+.|+ -|||-.+.|+.|.|.-
T Consensus        68 ~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~  102 (104)
T d1jmta_          68 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL  102 (104)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred             eeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEE
Confidence            367999999999999999 5999999999999864

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=0.084  Score=35.03  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=26.6

Q ss_pred             ceEEEEEEeccchhhHHh-hccCCeecCceE
Q 025931            8 TQIAYVTFKDMQGAETAV-LLSGATIVDLSV   37 (246)
Q Consensus         8 sqtA~VTFe~~~Aa~TAL-LLsGAtL~d~~V   37 (246)
                      ...|+|+|+++..++-|+ -|||..|.|+.|
T Consensus        40 ~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~   70 (72)
T d1x4ea1          40 KGYGFVDFDSPSAAQKAVTALKASGVQAQMA   70 (72)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred             cceeEEEECCHHHHHHHHHHhCCCEECCEEC
Confidence            358999999999999999 699999988765

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=85.51  E-value=0.22  Score=33.99  Aligned_cols=32  Identities=28%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             eEEEEEEeccchhhHHhh-ccCCeecC-ceEEEe
Q 025931            9 QIAYVTFKDMQGAETAVL-LSGATIVD-LSVSIS   40 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-LsGAtL~d-~~V~It   40 (246)
                      ..|+|.|.++..|..|+- |+|..|.+ ..|.|.
T Consensus        46 g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~   79 (83)
T d2b0ga1          46 DIAFVEFTTELQSNAAKEALQGFKITPTHAMKIT   79 (83)
T ss_dssp             SCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEE
T ss_pred             eeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEE
Confidence            479999999999999985 89999964 678885

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.08  E-value=0.24  Score=35.18  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             eEEEEEEeccchhhHHh---hccCCeecCceEEEecCC
Q 025931            9 QIAYVTFKDMQGAETAV---LLSGATIVDLSVSISLAP   43 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL---LLsGAtL~d~~V~It~~~   43 (246)
                      ..|+|.|+++.+|..|+   -+++..|.|..|.|.-+.
T Consensus        56 ~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~   93 (99)
T d1x4fa1          56 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE   93 (99)
T ss_dssp             TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred             CcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcC
Confidence            47999999999999998   489999999999997543

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.94  E-value=0.4  Score=32.86  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             eEEEEEEeccchhhHHh---hccCCeecCceEEEec
Q 025931            9 QIAYVTFKDMQGAETAV---LLSGATIVDLSVSISL   41 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TAL---LLsGAtL~d~~V~It~   41 (246)
                      ..|+|+|+++..|+.|+   -+++..|.|.+|.|.-
T Consensus        45 ~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~   80 (88)
T d2cq1a1          45 NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY   80 (88)
T ss_dssp             TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEE
Confidence            47999999999999996   4689999999999964

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.40  E-value=1.1  Score=30.56  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             eEEEEEEeccchhhHHhh-------ccCCeecCceEEEecC
Q 025931            9 QIAYVTFKDMQGAETAVL-------LSGATIVDLSVSISLA   42 (246)
Q Consensus         9 qtA~VTFe~~~Aa~TALL-------LsGAtL~d~~V~It~~   42 (246)
                      ..|+|+|.++..++.||-       .+|..|.|..|.|..+
T Consensus        51 g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a   91 (98)
T d1x4ha1          51 GCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA   91 (98)
T ss_dssp             SEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred             ceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEEC
Confidence            479999999999999984       3578899999999754

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.48  E-value=0.95  Score=31.49  Aligned_cols=37  Identities=11%  Similarity=0.131  Sum_probs=30.1

Q ss_pred             CCCc-eEEEEEEeccchhhHHhhccCCeecCceEEEecC
Q 025931            5 NEWT-QIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA   42 (246)
Q Consensus         5 ~e~s-qtA~VTFe~~~Aa~TALLLsGAtL~d~~V~It~~   42 (246)
                      ++.+ ..|+|+|.++..++-||- .+-.|.|..|.|..+
T Consensus        46 tg~srG~aFV~f~~~~~a~~al~-~~~~l~Gr~i~v~~a   83 (90)
T d2cqga1          46 TGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP   83 (90)
T ss_dssp             SCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred             CcccCCEEEEEECCHHHHHHHHh-cCCccCCEEeEEEeC
Confidence            3444 489999999999999986 556899999999754