Citrus Sinensis ID: 025938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHcccEEEEEEEcccEEEEEEEccccccccEEEEEEEEEEEEEEEEccccccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHHccHcccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEccEEEEEEEEcccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDGREAMVasggvsgpyyiqqhrgafsgshsatqsglmqtppgfrsssnlniptqpnvgstfavepkhvnfghnmsvpsgvplsdpvkkkrgrprkyapdgqvslglsplparpkrspasdsqalkrsrgrppgtgrKQQLATLGEwmnssagiafaphvisiGVGEDIVAKMLSFSQQRPRVVCILsgrgtvssvtlrqpatsvptvtYEVEALCLYLFLFWKkkihqknfhfctlpflclllvp
Flexible Loop (DISEMBL)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFghnmsvpsgvplsdpvKKKRgrprkyapdgqvslglsplparpkrspasdsqalkrsrgrppgtgRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSgrgtvssvtlrqpatsvptvtYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Low Complexity Region (SEG)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Disordered region (IsUnstruct)
**********************************************************************************************************************************************TLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLV*
Disordered Region (DISOPRED)
*************************************************************************************************AP**************************************************SSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFW******KNFHFCTLPFLCLLLVP
Disordered Region (DISEMBL)
*********SGGVSGPYYIQQHRGA*************QTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSD************APDGQVSLGLSPL****************************QQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Disordered Region (DISPRO)
**************GPYY**QHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNF*HNMSVP**********************GQVSL*********************************Q**ATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVEALCLYLFLFWKKKIHQKNFHFCTLPFLCLLLVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.361	0.286	0.397	7e-09

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 112 ARPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIV 170
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV
Sbjct: 71  GRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIV 127

Query: 171 AKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT 203
             + +++++R R V +L G GTVS+VTLRQP T
Sbjct: 128 ESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVT 160

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
255537455	347	DNA binding protein, putative [Ricinus c	0.873	0.619	0.632	4e-68
225426407	346	PREDICTED: uncharacterized protein LOC10	0.865	0.615	0.641	6e-67
224053919	343	predicted protein [Populus trichocarpa]	0.853	0.612	0.638	3e-62
224074919	346	predicted protein [Populus trichocarpa]	0.873	0.621	0.619	6e-62
356540448	352	PREDICTED: uncharacterized protein LOC10	0.849	0.593	0.588	6e-59
297742528	309	unnamed protein product [Vitis vinifera]	0.747	0.595	0.592	1e-56
356528260	352	PREDICTED: uncharacterized protein LOC10	0.841	0.588	0.542	1e-55
356513399	352	PREDICTED: uncharacterized protein LOC10	0.841	0.588	0.542	3e-55
356497236	357	PREDICTED: uncharacterized protein LOC10	0.849	0.585	0.548	4e-53
449452330	343	PREDICTED: uncharacterized protein LOC10	0.873	0.626	0.584	9e-53

>gi|255537455|ref|XP_002509794.1| DNA binding protein, putative [Ricinus communis] gi|223549693|gb|EEF51181.1| DNA binding protein, putative [Ricinus communis]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 143/226 (63%), Positives = 169/226 (74%), Gaps = 11/226 (4%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGREAM  + G S PYYI +  G       +       +PPGFR  +N N+    N   
Sbjct: 1   MDGREAMALASG-STPYYIHRGGGVGGSGSGSQAG-GFHSPPGFRPLANPNLLAHSNTRP 58

Query: 59  ---GSTFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPAR 113
              GS+F++EP ++NF H  N++VPSG+P+ +PVKKKRGRPRKYAPDGQVSLGLSPLP +
Sbjct: 59  GSSGSSFSIEPSNINFVHGMNVAVPSGLPVGEPVKKKRGRPRKYAPDGQVSLGLSPLPVK 118

Query: 114 PKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKM 173
           PK S   D  + KR+RGRPPGTGRKQQLA LGEWMNSSAGIAF+PHVI IGVGEDIVAK+
Sbjct: 119 PKPSSGQDPLSPKRARGRPPGTGRKQQLALLGEWMNSSAGIAFSPHVIRIGVGEDIVAKV 178

Query: 174 LSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           LSF+QQRPR +CILSG GTVSSVTLRQPA+S PT+T+E   E LCL
Sbjct: 179 LSFAQQRPRALCILSGTGTVSSVTLRQPASSGPTLTFEGRFEILCL 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426407|ref|XP_002273061.1| PREDICTED: uncharacterized protein LOC100249560 [Vitis vinifera]

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 147/229 (64%), Positives = 163/229 (71%), Gaps = 16/229 (6%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAF---SGSHSATQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGREAM  SG  S PYYI  HRG     S S S   SG +  PPGFR  SN  IP Q N
Sbjct: 1   MDGREAMALSG--SPPYYI--HRGVVGSASLSGSGIHSGGLHAPPGFRPLSNPGIPVQSN 56

Query: 58  V-----GSTFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPL 110
           V     G TF+V+    NF H  NM+VPSGVP ++PVK+KRGRPRKY PDG VSLGLSP+
Sbjct: 57  VRNNSVGQTFSVDHSQTNFPHGFNMAVPSGVPPAEPVKRKRGRPRKYGPDGNVSLGLSPM 116

Query: 111 PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIV 170
            ARP     S +   KR RGRPPGTGRKQQLATLGEWMNSSAG+AFAPHVIS+ VGEDI 
Sbjct: 117 SARPSLGSGSVTPTQKRGRGRPPGTGRKQQLATLGEWMNSSAGLAFAPHVISMAVGEDIA 176

Query: 171 AKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
            ++LSFSQQRPR +CILS  GTVS+VTLRQP +S  TVTYE   E LCL
Sbjct: 177 TRILSFSQQRPRALCILSASGTVSAVTLRQPTSSSGTVTYEGRFEILCL 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053919|ref|XP_002298038.1| predicted protein [Populus trichocarpa] gi|222845296|gb|EEE82843.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/227 (63%), Positives = 166/227 (73%), Gaps = 17/227 (7%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGA-FSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV- 58
           MDGREAM  S G S PY+I  HRG+ F G    +Q G+   PPGFRS SN  +  Q NV 
Sbjct: 1   MDGREAMPFSSG-SSPYHI--HRGSGFLGPGYGSQHGVSHPPPGFRSLSNPQLAAQSNVR 57

Query: 59  -GST---FAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPA 112
            GST   F++EP  VNFGH  NM+  S V + +PVKKKRGRPRKY   GQVSLGLSPLP 
Sbjct: 58  SGSTVPAFSIEPPDVNFGHGINMAATSEVQVGEPVKKKRGRPRKYGLVGQVSLGLSPLPN 117

Query: 113 RPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAK 172
           +PK S   DS   KR+RGRPPG+GRKQQLATLG    +SAG+AF+PHVISI VGEDIV+K
Sbjct: 118 KPKPSSGEDSSTSKRNRGRPPGSGRKQQLATLG----NSAGVAFSPHVISIEVGEDIVSK 173

Query: 173 MLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           +LSFSQQRPR VCILSG GTVSSVTLRQPA+S  ++TYE   E LCL
Sbjct: 174 LLSFSQQRPRAVCILSGTGTVSSVTLRQPASSGSSITYEGRFEILCL 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074919|ref|XP_002304491.1| predicted protein [Populus trichocarpa] gi|222841923|gb|EEE79470.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 140/226 (61%), Positives = 164/226 (72%), Gaps = 11/226 (4%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGRE M    G S  YYI +  G    S S +Q   +  P GFRS S+ ++ +Q NV  
Sbjct: 1   MDGRETMAFPSGSSS-YYIHRGSGILG-SGSGSQHDPLHPPTGFRSLSSPHLASQSNVRP 58

Query: 59  GST---FAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPAR 113
           GS+   F++EP + NFGH  NM+  S V + +PVKKKRGRPRKY  DGQVSLGLS  P +
Sbjct: 59  GSSAPAFSIEPPNANFGHGINMAATSEVQVGEPVKKKRGRPRKYGLDGQVSLGLSSFPDK 118

Query: 114 PKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKM 173
            K S   DS   KR+RGRPPG+GRKQQLATLGEWMNSSAG+AF+PHV+SIGVGEDIV+K+
Sbjct: 119 AKPSSGEDSSTSKRNRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVVSIGVGEDIVSKL 178

Query: 174 LSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           LSFSQQRPR VCILSG GTVSSVTLRQPA+S P +TYE   E LCL
Sbjct: 179 LSFSQQRPRAVCILSGTGTVSSVTLRQPASSGPPITYEGRFEILCL 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540448|ref|XP_003538701.1| PREDICTED: uncharacterized protein LOC100790569 [Glycine max]

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 136/231 (58%), Positives = 164/231 (70%), Gaps = 22/231 (9%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSA---TQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGRE M   GG S PYY+Q HRG   G       TQSG  Q P GFR+ SN++      
Sbjct: 1   MDGREGMAFPGG-SAPYYMQ-HRGGGVGGSVPGTGTQSGGFQPPSGFRALSNVS------ 52

Query: 58  VGSTFAVE--PKHVNFGHNMSVPS------GVPLS-DPVKKKRGRPRKYAPDGQVSLGLS 108
            GS F VE  P+H +F H ++  S      GVP S +PVKKKRGRPRKY PDG VSL LS
Sbjct: 53  PGSAFKVESQPQHASFSHGINTGSSPDGGSGVPSSGEPVKKKRGRPRKYGPDGSVSLMLS 112

Query: 109 PLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGED 168
           P+ A    +P S + + KR RGRPPG+GRKQQLATLGEWMN+SAG+AF+PHVI++GVGED
Sbjct: 113 PMSATANSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNNSAGLAFSPHVITVGVGED 172

Query: 169 IVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           IVAK+LSF++QRPR VCIL+G GT+SSVTLRQPA++  +VTYE   + LCL
Sbjct: 173 IVAKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSISVTYEGRFQILCL 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742528|emb|CBI34677.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 147/221 (66%), Gaps = 37/221 (16%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGS 60
           MDGREAM  SG  S PYYI  HRG      SA+ SG                        
Sbjct: 1   MDGREAMALSG--SPPYYI--HRGVVG---SASLSG------------------------ 29

Query: 61  TFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSP 118
             +V+    NF H  NM+VPSGVP ++PVK+KRGRPRKY PDG VSLGLSP+ ARP    
Sbjct: 30  --SVDHSQTNFPHGFNMAVPSGVPPAEPVKRKRGRPRKYGPDGNVSLGLSPMSARPSLGS 87

Query: 119 ASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQ 178
            S +   KR RGRPPGTGRKQQLATLGEWMNSSAG+AFAPHVIS+ VGEDI  ++LSFSQ
Sbjct: 88  GSVTPTQKRGRGRPPGTGRKQQLATLGEWMNSSAGLAFAPHVISMAVGEDIATRILSFSQ 147

Query: 179 QRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           QRPR +CILS  GTVS+VTLRQP +S  TVTYE   E LCL
Sbjct: 148 QRPRALCILSASGTVSAVTLRQPTSSSGTVTYEGRFEILCL 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528260|ref|XP_003532722.1| PREDICTED: uncharacterized protein LOC100813888 [Glycine max]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 155/236 (65%), Gaps = 29/236 (12%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGS 60
           MDGREAM  SG  S PYY+  HR    GS S       +  PGFR  SN  I  + N   
Sbjct: 1   MDGREAMAFSG-SSAPYYM--HRVGIGGSASG-----FEPAPGFRPLSNTGIQAESNARG 52

Query: 61  T-------------FAVEP--KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSL 105
                         F+VEP   H NF H + +  G P S+PVKKKRGRPRKY PDG VSL
Sbjct: 53  GQGQGGGSVGSSSPFSVEPPQGHTNFNHGIGI--GAPSSEPVKKKRGRPRKYGPDGAVSL 110

Query: 106 GLSPL--PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
            LSP+  PA   +  +  + + K++RGRPPG+GRKQQLA LGEWMNSSAG+AF+PHV++I
Sbjct: 111 RLSPMSAPANSTQDASETTPSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTI 170

Query: 164 GVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           GVGEDIVAK+LS SQQR R +CI+SG GTVSSVTLRQPA++  +VT+E   + LCL
Sbjct: 171 GVGEDIVAKLLSLSQQRSRALCIMSGTGTVSSVTLRQPASTNASVTFEGRFQILCL 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513399|ref|XP_003525401.1| PREDICTED: uncharacterized protein LOC100798706 [Glycine max]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 153/236 (64%), Gaps = 29/236 (12%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGREAM  S G S PYY+  HR               Q  PGFR  SN  I  + N   
Sbjct: 1   MDGREAMAFSDG-SAPYYM--HR-----VGVGGSGSGFQPAPGFRPLSNTGIQAESNARG 52

Query: 59  -----------GSTFAVEP--KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSL 105
                       S F+VEP   H NF H + +  G P  +PVKKKRGRPRKY PDG VSL
Sbjct: 53  GQGQGGGSVGSNSPFSVEPPQGHANFNHGIGI--GAPSREPVKKKRGRPRKYGPDGAVSL 110

Query: 106 GLSPL--PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
            LSP+  PA   +  +  + + K++RGRPPG+GRKQQLA LGEWMNSSAG+AF+PHVI+I
Sbjct: 111 RLSPMSAPANSTQDASETTPSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVITI 170

Query: 164 GVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           GVGEDIVAK+LS SQQRPR +CI+SG GTVSSVTLRQPA++  +VT+E   + LCL
Sbjct: 171 GVGEDIVAKLLSLSQQRPRALCIMSGTGTVSSVTLRQPASTNASVTFEGRFQILCL 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497236|ref|XP_003517468.1| PREDICTED: uncharacterized protein LOC100795781 [Glycine max]

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 158/239 (66%), Gaps = 30/239 (12%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSA---TQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGRE M   GG S PYY+Q HRG           TQSG  Q P GFR+ SN++      
Sbjct: 1   MDGREGMAFPGG-SVPYYMQ-HRGGGVSGSGPGTGTQSGGFQPPSGFRALSNVS------ 52

Query: 58  VGSTFAVE----------PKHVNFGHNMSVPSGVPLS-------DPVKKKRGRPRKYAPD 100
            GS F VE          P+H +F H +++ S            +PVKKKRGRPRKY PD
Sbjct: 53  PGSAFKVESHSYSHSQSQPQHASFSHGINIGSSPDGGGGGPSSGEPVKKKRGRPRKYGPD 112

Query: 101 GQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHV 160
           G VSL LSP+ A    +P S + + KR RGRPPG+GRKQQLATLGEWMNSSAG+AF+PHV
Sbjct: 113 GSVSLMLSPMSATASSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHV 172

Query: 161 ISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           I++GV EDIVAK+LSF++QRPR VCIL+G GT+SSVTLRQPA++   VTYE   + LCL
Sbjct: 173 ITVGVDEDIVAKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSIGVTYEGRFQILCL 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452330|ref|XP_004143912.1| PREDICTED: uncharacterized protein LOC101219973 [Cucumis sativus]

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 132/226 (58%), Positives = 160/226 (70%), Gaps = 11/226 (4%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPN--- 57
           MDGRE M  SGG S  YYI +  G          +G   +P  FR  +N  + +  N   
Sbjct: 1   MDGREGMALSGG-SASYYIHRGGGVGGSGSGLPTAGSHASPV-FRPMANQGVLSHSNLRG 58

Query: 58  --VGSTFAVEPKHVNF--GHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPAR 113
             VGST+ VEP H N+  G  ++V +GV  S+PVKKKRGRPRKYAPDGQVSLGLSP+ A 
Sbjct: 59  NSVGSTYTVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAG 118

Query: 114 PKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKM 173
            K +P S+S   +R RGRPPG+GRKQQLA LG+WMN+SAG+AFAPHVI +G GEDIVAK+
Sbjct: 119 SKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKV 178

Query: 174 LSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCL 217
           LSF+QQRPR VC+LSG GTVSSVTLRQPA++  +VTYE   + LCL
Sbjct: 179 LSFAQQRPRAVCVLSGNGTVSSVTLRQPASTGVSVTYEGHFQILCL 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.528	0.343	0.703	1.6e-57
TAIR|locus:2031306	361	AT1G63480 [Arabidopsis thalian	0.808	0.551	0.519	1.9e-44
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.813	0.574	0.447	7e-38
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.817	0.567	0.441	3.6e-34
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.825	0.578	0.380	1.5e-28
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.703	0.485	0.385	3.2e-26
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.479	0.305	0.471	1.6e-24
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.361	0.202	0.505	2.9e-24
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.516	0.380	0.453	3.3e-24
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.833	0.507	0.330	8.7e-24

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 95/135 (70%), Positives = 113/135 (83%)

Query:    82 PLSDP-VKKKRGRPRKYAPDGQVSLGLSPLPARPKRSP----ASDSQALKRSRGRPPGTG 136
             P   P VKKKRGRPRKY PDGQVSLGLSP+P   K+S      SD  A KR+RGRPPGTG
Sbjct:    98 PSEQPMVKKKRGRPRKYVPDGQVSLGLSPMPCVSKKSKDSSSMSDPNAPKRARGRPPGTG 157

Query:   137 RKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSV 196
             RKQ+LA LGEWMN+SAG+AFAPHVIS+G GEDIV+K+LSFSQ+RPR +CI+SG GTVSSV
Sbjct:   158 RKQRLANLGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSV 217

Query:   197 TLRQPATSVPTVTYE 211
             TLR+PA++ P++T+E
Sbjct:   218 TLREPASTTPSLTFE 232

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2031306 AT1G63480 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 118/227 (51%), Positives = 141/227 (62%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGAFSG-SHSATQSGLMQTPP--GFRSSSNLNI--PTQ 55
             MDGREAM   G  S  YY+Q  RGAF+  + S   SGL   PP  G R  SN NI  P  
Sbjct:     1 MDGREAMAFPGSHS-QYYLQ--RGAFTNLAPSQVASGLHAPPPHTGLRPMSNPNIHHPQA 57

Query:    56 PNVGSTFAVEPKHVNFGHNMSV--------PSGVPLSDP-VKKKRGRPRKYAPDGQVSLG 106
              N G  F+     ++ G   S         P   P  +P VK+KRGRPRKY   G+    
Sbjct:    58 NNPGPPFSDFGHTIHMGVVSSASDADVQPPPPPPPPEEPMVKRKRGRPRKY---GE---- 110

Query:   107 LSPLPARPKR--SPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIG 164
               P+ +   R  SP SD    KR+RGRPPGTGRKQ+LA LGEWMN+SAG+AFAPHVISIG
Sbjct:   111 --PMVSNKSRDSSPMSDPNEPKRARGRPPGTGRKQRLANLGEWMNTSAGLAFAPHVISIG 168

Query:   165 VGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE 211
              GEDI AK+LSFSQQRPR +CI+SG GT+SSVTL +P ++   +TYE
Sbjct:   169 AGEDIAAKVLSFSQQRPRALCIMSGTGTISSVTLCKPGSTDRHLTYE 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 102/228 (44%), Positives = 133/228 (58%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPT------ 54
             MD R+AM  SG  SG YYI  HRG  SGS   T  G  Q   G R   N N P       
Sbjct:     1 MDRRDAMGLSG--SGSYYI--HRG-LSGSGPPTFHGSPQQQQGLRHLPNQNSPFGSGSTG 55

Query:    55 --QPNV-G----STFA----VEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQV 103
                P++ G    +T A      P H+  G NM  P   P   P+K+KRGRPRKY  DG V
Sbjct:    56 FGSPSLHGDPSLATAAGGAGALPHHI--GVNMIAPPPPPSETPMKRKRGRPRKYGQDGSV 113

Query:   104 SLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
             SL LS        S  + + + KR RGRPPG+G+KQ++A++GE M SS+G++F PHVI++
Sbjct:   114 SLALSSSSV----STITPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTPHVIAV 169

Query:   164 GVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE 211
              +GEDI +K+++FSQQ PR +C+LS  G VS+ TL QP+ S   + YE
Sbjct:   170 SIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYE 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 101/229 (44%), Positives = 129/229 (56%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGA-FSGSHSATQSGLMQTPPGFRSSSNLNIP------ 53
             MD R+AM  SG  SG YYIQ  RG   SG              GF   +N   P      
Sbjct:     1 MDRRDAMALSG--SGSYYIQ--RGIPGSGPPPPQTQPTFHGSQGFHHFTNSISPFGSNPN 56

Query:    54 TQPNVG--ST-FAVEPKHVNFG--HNMSVPSGVPLSDP-----VKKKRGRPRKYAPDG-Q 102
               PN G  ST F   P  V+     + +  +G  ++ P     VK+KRGRPRKY  DG  
Sbjct:    57 PNPNPGGVSTGFVSPPLPVDSSPADSSAAAAGALVAPPSGDTSVKRKRGRPRKYGQDGGS 116

Query:   103 VSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVIS 162
             VSL LSP  +    SP S+    KR RGRPPG+G+KQ+L+++GE M SS G++F PHVI 
Sbjct:   117 VSLALSPSISNV--SPNSN----KRGRGRPPGSGKKQRLSSIGEMMPSSTGMSFTPHVIV 170

Query:   163 IGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE 211
             + +GEDI +K++SFS Q PR +C+LS  G VS+ TL QPA S  T+ YE
Sbjct:   171 VSIGEDIASKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYE 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 86/226 (38%), Positives = 121/226 (53%)

Query:     1 MDGREA-MVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPP-GFRSSSNLNIPTQP-- 56
             M G E  ++A+   S  + +  H+      HS  Q    Q  P  F       +  QP  
Sbjct:     1 MSGSETGLMAATRESMQFTMALHQ---QQQHSQAQPQQSQNRPLSFGGDDGTALYKQPMR 57

Query:    57 NVGSTFAVEPKHV--NFGHNMSVPSGVPL------SDPVKKKRGRPRKYAPD-GQVSLGL 107
             +V      +P     N   NM++P G         S+PVKK+RGRPRKY PD G++SLGL
Sbjct:    58 SVSPPQQYQPNSAGENSVLNMNLPGGESGGMTGTGSEPVKKRRGRPRKYGPDSGEMSLGL 117

Query:   108 SP-LPARPKRSPASDSQALKRSRGRPPGTGRKQ-QLATLGEWMNSSAGIAFAPHVISIGV 165
             +P  P+     P+S     ++ RGRPPG+  K+ +L  LG     S GI F PHV+++  
Sbjct:   118 NPGAPSFTVSQPSSGGDGGEKKRGRPPGSSSKRLKLQALG-----STGIGFTPHVLTVLA 172

Query:   166 GEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE 211
             GED+ +K+++ +   PR VC+LS  G +S+VTLRQ ATS  TVTYE
Sbjct:   173 GEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYE 218

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 76/197 (38%), Positives = 102/197 (51%)

Query:    29 SHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVK 88
             S S+ QS    TPP  + SS+   P    + +           G    +  G+     +K
Sbjct:    39 SESSNQSPTSVTPPPPQPSSHHTAPPPLQISTVTTTTTTAAMEG----ISGGL-----MK 89

Query:    89 KKRGRPRKYAPDGQVSLGLSPLPAR----PKRSPASDSQAL------KRSRGRPPGTGRK 138
             KKRGRPRKY PDG V + LSP P      P   P   S  +      KRS+ +P  +  +
Sbjct:    90 KKRGRPRKYGPDGTV-VALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSFNR 148

Query:   139 ----QQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVS 194
                  Q+  LGEW   S G  F PH+I++  GED+  K++SFSQQ PR +C+LS  G +S
Sbjct:   149 TKYHHQVENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVIS 208

Query:   195 SVTLRQPATSVPTVTYE 211
             SVTLRQP +S  T+TYE
Sbjct:   209 SVTLRQPDSSGGTLTYE 225

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 67/142 (47%), Positives = 85/142 (59%)

Query:    87 VKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQA-----------------LKRSR 129
             VKKKRGRPRKY PDG ++LGL+P    P  S AS+S                   +KR+R
Sbjct:   101 VKKKRGRPRKYTPDGSIALGLAP--TSPLLSAASNSYGEGGVGDSGGNGNSVDPPVKRNR 158

Query:   130 GRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSG 189
             GRPPG+ +KQ L  LG     ++G+ F PHVI +  GEDI +K+++FS Q  R +CILS 
Sbjct:   159 GRPPGSSKKQ-LDALG----GTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSA 213

Query:   190 RGTVSSVTLRQPATSVPTVTYE 211
              G VS V LRQ + S   VTYE
Sbjct:   214 SGAVSRVMLRQASHSSGIVTYE 235

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
 Identities = 48/95 (50%), Positives = 62/95 (65%)

Query:   119 ASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQ 178
             +SD  A KR+RGRPPG+G+KQ L  LG     + G+ F PHVI +  GEDI  K+L+F+ 
Sbjct:   190 SSDPPA-KRNRGRPPGSGKKQ-LDALG----GTGGVGFTPHVIEVKTGEDIATKILAFTN 243

Query:   179 QRPRVVCILSGRGTVSSVTLRQPATSVPTVTYEVE 213
             Q PR +CILS  G V++V LRQ   S PT T + E
Sbjct:   244 QGPRAICILSATGAVTNVMLRQANNSNPTGTVKYE 278

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 63/139 (45%), Positives = 80/139 (57%)

Query:    84 SDPVKKKRGRPRKYAPDGQVSLGLSPLP---ARPKRSPASDSQALKRSRGR-PPGTGR-- 137
             S P+KK+RGRPRKY  DG  ++ LSP P   A P  S   D       RG+  P T    
Sbjct:    68 SGPIKKRRGRPRKYGHDG-AAVTLSPNPISSAAPTTSHVIDFSTTSEKRGKMKPATPTPS 126

Query:   138 -----KQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGT 192
                  K Q+  LGEW  SSA   F PH+I++  GED+  +++SFSQQ    +C+L   G 
Sbjct:   127 SFIRPKYQVENLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGV 186

Query:   193 VSSVTLRQPATSVPTVTYE 211
             VSSVTLRQP +S  T+TYE
Sbjct:   187 VSSVTLRQPDSSGGTLTYE 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 75/227 (33%), Positives = 112/227 (49%)

Query:     1 MDGREAMVASGGVSGPYYI-QQHRGAFS-GSHSATQSGLMQTPPGFRSSSNLNIP--TQP 56
             M+ RE    +  ++  + + QQH  A S G +S      M  PP   + +   +P  T P
Sbjct:     1 MEEREGTNINNNITSSFGLKQQHEAAASDGGYS------MDPPPRPENPNPFLVPPTTVP 54

Query:    57 NVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKR 116
                +  A   ++     ++++P+    ++ +KKKRGRPRKY PDG + + LSP+P     
Sbjct:    55 AAATVAAAVTENAATPFSLTMPTENTSAEQLKKKRGRPRKYNPDGTLVVTLSPMPISSSV 114

Query:   117 SPASDSQALKRSRGRPPGTG--RKQQLATL----------GEWMNSSAGIAFAPHVISIG 164
                S+    KR RGR       +K Q+             G       G  F PHV+ + 
Sbjct:   115 PLTSEFPPRKRGRGRGKSNRWLKKSQMFQFDRSPVDTNLAGVGTADFVGANFTPHVLIVN 174

Query:   165 VGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPTVTYE 211
              GED+  K+++FSQQ  R +CILS  G +S+VTLRQ  TS  T+TYE
Sbjct:   175 AGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 221

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	8e-12
cd11378	113	cd11378, DUF296, Domain of unknown function found	9e-11

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score = 60.3 bits (147), Expect = 8e-12
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 156 FAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQP---ATSVPTVTYE 211
             PHV+ +  GED+V  + +F++QR     +LSG G VS+VTLRQP   A S   VT E
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLE 59

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 57.2 bits (139), Expect = 9e-11
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 158 PHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---SVPTVTYE 211
           P V+ +  GED+V  + +F+++      +LSG G VS+ TLR P        TVT+E
Sbjct: 2   PFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFE 58

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.56
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.02
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.5
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.45
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	85.28
PF13546	273	DDE_5: DDE superfamily endonuclease	82.33

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.56  E-value=6.1e-15  Score=118.42  Aligned_cols=80  Identities=21%  Similarity=0.216  Sum_probs=66.9

Q ss_pred             ceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCC--CCCceEEE--EEEEeeeeeeeec-------
Q 025938          156 FAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT--SVPTVTYE--VEALCLYLFLFWK-------  224 (246)
Q Consensus       156 f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~s--sg~tvtye--FEILSLSGS~l~~-------  224 (246)
                      ||+|+++|.+||||.++|++||++.++..|+++++|+|++|+||+.+.  ...+.+++  |||+||+|++.+.       
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~~~~H   80 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDGKPFVH   80 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETTEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCCCCcce
Confidence            789999999999999999999999998777779999999999999743  33356677  9999999999982       


Q ss_pred             -------CCCCceeeeee
Q 025938          225 -------KKIHQKNFHFC  235 (246)
Q Consensus       225 -------~~~g~~~gh~~  235 (246)
                             .++...+|||.
T Consensus        81 lHisl~~~~g~v~gGHl~   98 (120)
T PF03479_consen   81 LHISLADPDGQVFGGHLL   98 (120)
T ss_dssp             EEEEEE-TTSEEEEEEEE
T ss_pred             EEEEEECCCCeEEeeEeC
Confidence                   33456677776

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.02  E-value=1.9e-09  Score=90.96  Aligned_cols=82  Identities=15%  Similarity=0.176  Sum_probs=68.6

Q ss_pred             CceeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCCCCCc---eEEE--EEEEeeeeeeeecC----
Q 025938          155 AFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPT---VTYE--VEALCLYLFLFWKK----  225 (246)
Q Consensus       155 ~f~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg~t---vtye--FEILSLSGS~l~~~----  225 (246)
                      .-+-+++++.+|||+.+.|.+||++......|.+|.|++++++||..+.....   +.+.  ||||||.|++..++    
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~p~~H   87 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDDPFVH   87 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCCCcEE
Confidence            45778999999999999999999999986699999999999999999855443   3333  99999999998875    


Q ss_pred             --------CCCceeeeeee
Q 025938          226 --------KIHQKNFHFCT  236 (246)
Q Consensus       226 --------~~g~~~gh~~~  236 (246)
                              ++...+|||..
T Consensus        88 lHa~l~~~~G~~~GGHL~~  106 (141)
T COG1661          88 LHAALGDENGITLGGHLLE  106 (141)
T ss_pred             EEEEEecCCCcEEeeeecc
Confidence                    45666777753

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.50  E-value=0.00093  Score=36.08  Aligned_cols=12  Identities=75%  Similarity=1.138  Sum_probs=4.4

Q ss_pred             cCCCCCCCCCCC
Q 025938           88 KKKRGRPRKYAP   99 (246)
Q Consensus        88 KkKRGRPRKY~p   99 (246)
                      +||||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.45  E-value=0.0016  Score=41.24  Aligned_cols=15  Identities=60%  Similarity=0.933  Sum_probs=13.1

Q ss_pred             cCCCCCCCCCCCCCc
Q 025938           88 KKKRGRPRKYAPDGQ  102 (246)
Q Consensus        88 KkKRGRPRKY~pdg~  102 (246)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999988764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=85.28  E-value=0.3  Score=43.87  Aligned_cols=12  Identities=67%  Similarity=1.052  Sum_probs=10.4

Q ss_pred             cCcCCCCCCCCC
Q 025938           86 PVKKKRGRPRKY   97 (246)
Q Consensus        86 ~~KkKRGRPRKY   97 (246)
                      -.|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            489999999964

>PF13546 DDE_5: DDE superfamily endonuclease

Probab=82.33  E-value=0.81  Score=40.62  Aligned_cols=17  Identities=53%  Similarity=0.903  Sum_probs=12.6

Q ss_pred             CCcCcCCCCCCCCCCCC
Q 025938           84 SDPVKKKRGRPRKYAPD  100 (246)
Q Consensus        84 ~~~~KkKRGRPRKY~pd  100 (246)
                      ..+..+|||||||||.-
T Consensus       227 ~~~~~~~rGRPr~~g~~  243 (273)
T PF13546_consen  227 PPPPPPKRGRPRKYGRR  243 (273)
T ss_pred             ccccCCCCCCCCCCCCc
Confidence            34455569999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	7e-10
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	6e-08
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	5e-06

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 55.1 bits (132), Expect = 7e-10
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 145 GEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQR-PRVVCILSGRGTVSSVTLRQPAT 203
              ++         + + +  G+++ +++ +F QQ   R   I    G+++ V LR    
Sbjct: 7   SMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ 66

Query: 204 SVPTVTYE 211
              T    
Sbjct: 67  EATTSLTG 74

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 49.6 bits (118), Expect = 6e-08
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 158 PHVISIGVGEDIVAKMLSF-SQQRPRVVCILSGRGTVSSVTLRQPATSVPTV 208
              + +  G D+  +++    Q R     I S  G +S++ +R   +     
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQ 55

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 8/54 (14%), Positives = 24/54 (44%)

Query: 148 MNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQP 201
           M +        ++  +  GE+++  + +F ++      I++G GT+ +  +   
Sbjct: 1   MVTGMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYF 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.67
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.66
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.53
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.52
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.44
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.14
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.79

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.67  E-value=3e-16  Score=130.09  Aligned_cols=85  Identities=18%  Similarity=0.201  Sum_probs=73.6

Q ss_pred             CCCCCceeEEEEecCCccHHHHHHHHHhhCC-ceEEEEeccceeeeeEEeCCCCCCCceEEE--EEEEeeeeeeeec---
Q 025938          151 SAGIAFAPHVISIGVGEDIVAKMLSFSQQRP-RVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCLYLFLFWK---  224 (246)
Q Consensus       151 s~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtye--FEILSLSGS~l~~---  224 (246)
                      +.++.+++|+|+|.+||||.++|.+||++++ +++|||+++|+|++|+||+++... +++++  ||||||+|++.+.   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~~~H   91 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELTGEH   91 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETTEEE
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCCCCE
Confidence            5667899999999999999999999998877 599999999999999999999766 66677  9999999999762   


Q ss_pred             ------CCCCc-eeeeeee
Q 025938          225 ------KKIHQ-KNFHFCT  236 (246)
Q Consensus       225 ------~~~g~-~~gh~~~  236 (246)
                            +..|+ .+|||..
T Consensus        92 lHisl~~~~G~v~GGHL~~  110 (154)
T 2hx0_A           92 LHLAVSDPYGVMLGGHMMP  110 (154)
T ss_dssp             EEEEEECTTSCEEEEEECT
T ss_pred             EEEEEECCCCCEEccccCC
Confidence                  44444 4888876

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.66  E-value=3.4e-16  Score=128.08  Aligned_cols=80  Identities=19%  Similarity=0.206  Sum_probs=70.0

Q ss_pred             ceeEEEEecCCccHHHHHHHHHhhCC-ceEEEEeccceeeeeEEeCCCCCCCceEEE--EEEEeeeeeeeec--------
Q 025938          156 FAPHVISIGVGEDIVAKMLSFSQQRP-RVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCLYLFLFWK--------  224 (246)
Q Consensus       156 f~pHvI~V~~GeDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtye--FEILSLSGS~l~~--------  224 (246)
                      |++|+++|.+||||.++|.+||++.+ +++||++++|+|++|+||+++... +++++  |||+||+|++.++        
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~~~HlHisl   80 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQHCHLHIAV   80 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCCCCEEEEEE
Confidence            89999999999999999999999988 599999999999999999999865 66777  9999999999763        


Q ss_pred             -CCCCce-eeeeee
Q 025938          225 -KKIHQK-NFHFCT  236 (246)
Q Consensus       225 -~~~g~~-~gh~~~  236 (246)
                       +..|++ +|||..
T Consensus        81 ~~~~G~v~GGHl~~   94 (142)
T 2p6y_A           81 ADAQGRVWGGHLLE   94 (142)
T ss_dssp             ECTTSCEEEEEECT
T ss_pred             ECCCCCEEccccCC
Confidence             444554 888865

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.53  E-value=1.3e-14  Score=118.26  Aligned_cols=68  Identities=15%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             eeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCCCCC---ceEEE--EEEEeeeeeeeec
Q 025938          157 APHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE--VEALCLYLFLFWK  224 (246)
Q Consensus       157 ~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg~---tvtye--FEILSLSGS~l~~  224 (246)
                      ++|+|+|.+||||.++|.+||+++++..|+++++|+|++|+||+++....   .++++  |||+||+|++.+.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~   82 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK   82 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC
Confidence            79999999999999999999999885444459999999999999876542   35565  9999999999774

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.52  E-value=1.4e-14  Score=118.40  Aligned_cols=68  Identities=19%  Similarity=0.210  Sum_probs=59.7

Q ss_pred             eeEEEEecCCccHHHHHHHHHhhCCc-eEEEEeccceeeeeEEeCCCCCCC---ceEEE--EEEEeeeeeeeecC
Q 025938          157 APHVISIGVGEDIVAKMLSFSQQRPR-VVCILSGRGTVSSVTLRQPATSVP---TVTYE--VEALCLYLFLFWKK  225 (246)
Q Consensus       157 ~pHvI~V~~GeDV~~kI~~Faqq~~r-AicILSa~GsVSnVTLRqp~ssg~---tvtye--FEILSLSGS~l~~~  225 (246)
                      ++|+|+|.+||||.++|.+||++.+. +.|| +++|+|++|+||+++....   +++++  ||||||+|++.+.+
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~v-s~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~d   83 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHI-SAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD   83 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEE-EEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEE-EEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCC
Confidence            69999999999999999999999884 6666 9999999999999987652   46676  99999999998853

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.44  E-value=2.1e-13  Score=112.40  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             eeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCCCCC---ceEEE--EEEEeeeeeeeec-------
Q 025938          157 APHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE--VEALCLYLFLFWK-------  224 (246)
Q Consensus       157 ~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg~---tvtye--FEILSLSGS~l~~-------  224 (246)
                      +.++++|.+||||.++|.+||++++...|+++++|++++|+||+++....   .++++  |||+||+|++.+.       
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~p~~H   95 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQVYLH   95 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCCceEE
Confidence            78999999999999999999999997555559999999999999875442   35666  9999999999874       


Q ss_pred             ------CC-CCceeeeeeec
Q 025938          225 ------KK-IHQKNFHFCTL  237 (246)
Q Consensus       225 ------~~-~g~~~gh~~~~  237 (246)
                            +. +...+|||..-
T Consensus        96 lH~sl~~~~G~v~gGHl~~g  115 (149)
T 3htn_A           96 LHITVGRSDYSALAGHLLSA  115 (149)
T ss_dssp             EEEEEECTTSBEEEEEEEEE
T ss_pred             EEEEEECCCCCEEeEEeCCC
Confidence                  33 44458888764

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.14  E-value=1.7e-10  Score=94.71  Aligned_cols=81  Identities=16%  Similarity=0.210  Sum_probs=65.1

Q ss_pred             eeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCCCCC---ceEEE-EEEEeeeeeeeec--------
Q 025938          157 APHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVP---TVTYE-VEALCLYLFLFWK--------  224 (246)
Q Consensus       157 ~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg~---tvtye-FEILSLSGS~l~~--------  224 (246)
                      +-++++|.+||||.++|.+||+++....+++++.|++++++|+..+....   ..+++ +||+||+|++.+.        
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~~~Ei~sl~Gtis~~dG~p~~Hl   92 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNVEMANMTGSIAWKEGKPSIHA   92 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEecCcEEEEEEEEEEcCCCCceEEE
Confidence            34899999999999999999999996444559999999999998765432   24566 9999999999864        


Q ss_pred             ------CCCCceeeeeeec
Q 025938          225 ------KKIHQKNFHFCTL  237 (246)
Q Consensus       225 ------~~~g~~~gh~~~~  237 (246)
                            +.+...+|||..-
T Consensus        93 H~~~~d~~g~v~GGHL~~g  111 (147)
T 3hwu_A           93 HGTVTDGTFQGAGGHLLGL  111 (147)
T ss_dssp             EEEEECTTCCEEEEEEEEE
T ss_pred             EEEEECCCCcEEeeEecCc
Confidence                  3345678888765

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.79  E-value=0.00043  Score=42.63  Aligned_cols=16  Identities=50%  Similarity=0.814  Sum_probs=14.5

Q ss_pred             hcccCCCCCCCCCCcc
Q 025938          124 ALKRSRGRPPGTGRKQ  139 (246)
Q Consensus       124 ~~Kr~RGRP~GS~nK~  139 (246)
                      ..||+||||.|||||.
T Consensus         3 tpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             SCCCCSSCCTTCCCCS
T ss_pred             CCcCCCCCcCcccccC
Confidence            4799999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	2e-05
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	9e-05

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 159 HVISIGVGEDIVAKMLSFSQQR-PRVVCILSGRGTVSSVTLRQPATSVPTV 208
           + + +  G+++ +++ +F QQ   R   I    G+++ V LR       T 
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTS 59

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 159 HVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLR---QPATSVPTVTYE 211
            ++ +  G+D+V ++  F +++      +S  G V S  +    Q           
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELM 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.49
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.32

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.49  E-value=6.8e-14  Score=111.88  Aligned_cols=84  Identities=18%  Similarity=0.188  Sum_probs=72.0

Q ss_pred             CCCCceeEEEEecCCccHHHHHHHHHhhCC-ceEEEEeccceeeeeEEeCCCCCCCceEEE--EEEEeeeeeeeec----
Q 025938          152 AGIAFAPHVISIGVGEDIVAKMLSFSQQRP-RVVCILSGRGTVSSVTLRQPATSVPTVTYE--VEALCLYLFLFWK----  224 (246)
Q Consensus       152 ~g~~f~pHvI~V~~GeDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtye--FEILSLSGS~l~~----  224 (246)
                      +++..|-++++|.+||||.++|.+||++.. +++||+++.|++++|+|++++... ...++  |||+||+|++.+.    
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~-~~~~~g~~Ei~sl~G~I~~~~~Hl   80 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELTGEHL   80 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETTEEEE
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCC-cEEecCcEEEEEEEEEeccCCCeE
Confidence            356789999999999999999999999888 699999999999999999998765 44566  9999999999865    


Q ss_pred             -----CC-CCceeeeeee
Q 025938          225 -----KK-IHQKNFHFCT  236 (246)
Q Consensus       225 -----~~-~g~~~gh~~~  236 (246)
                           +. +...+|||..
T Consensus        81 H~~~a~~~g~v~gGhL~~   98 (136)
T d2hx0a1          81 HLAVSDPYGVMLGGHMMP   98 (136)
T ss_dssp             EEEEECTTSCEEEEEECT
T ss_pred             EEEEECCCCcEEeEEecC
Confidence                 33 4556788865

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.32  E-value=1.1e-12  Score=104.10  Aligned_cols=80  Identities=18%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             eeEEEEecCCccHHHHHHHHHhhCCceEEEEeccceeeeeEEeCCCCCCCc---eEEE--EEEEeeeeeeeec-------
Q 025938          157 APHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPATSVPT---VTYE--VEALCLYLFLFWK-------  224 (246)
Q Consensus       157 ~pHvI~V~~GeDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg~t---vtye--FEILSLSGS~l~~-------  224 (246)
                      |-++++|.+||||.++|.+||++..+..|++++.|++++|+||+.+....+   +.++  |||+||+|++...       
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~p~~H   89 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKPFCH   89 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCCcEEE
Confidence            789999999999999999999999987788899999999999975544432   4454  9999999999754       


Q ss_pred             ------CCCCceeeeeee
Q 025938          225 ------KKIHQKNFHFCT  236 (246)
Q Consensus       225 ------~~~g~~~gh~~~  236 (246)
                            +++.+.+|||..
T Consensus        90 lH~~~~~~g~~~gGHl~~  107 (138)
T d2h6la1          90 IHVLLGKDGEVYGGHLFS  107 (138)
T ss_dssp             EEEEEEEBTEEEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCc
Confidence                  446677888865