Citrus Sinensis ID: 025969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWMTRTSI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEcccccEEEEEccccccHHHHHHHHHccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccHHHHccccccccccccHHHHHccccccccccccEEEEEEEEccccccccEEEEEHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MASLTSVAFTsigqtscqrkvnvsstrsLVSNFEGFRFRTSLFCHcvrfrasssssRMIIQCMstatdvpptvAETKMNFLKlykrpipsiYNTVLQELIVQQHLMRykrtyqydpvfALGFVTVYDRlmegypseeDREAIFQAYITALKEDPEQYRIDAQKLEEWargqtasslvefpskegevEGLLKDIAERasgkgnfsySRFFAVGLFRLLElanateptvLEKVISIRSLnwmtrtsi
Flexible Loop (DISEMBL)
masltsvaftsigqtscqrkvnvsstrslVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMstatdvpptvAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQtasslvefpskegEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELanateptvlekvisirslnwmtrtsi
Low Complexity Region (SEG)
MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWMTRTSI
Disordered region (IsUnstruct)
***********I****CQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKL*EW*********************LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWM*****
Disordered Region (DISOPRED)
*******AFTSI*********************EGFRFRTSLFCHC****************MSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQ*********************************RASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWM*****
Disordered Region (DISEMBL)
********FTSIG************TRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWMTRTSI
Disordered Region (DISPRO)
********FTSIGQ*******************EGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWM*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWMTRTSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q7XAB8	293	Protein THYLAKOID FORMATI	N/A	no	0.951	0.795	0.647	2e-84
Q84PB7	287	Protein THYLAKOID FORMATI	yes	no	0.746	0.637	0.775	9e-84
Q9SKT0	300	Protein THYLAKOID FORMATI	yes	no	0.910	0.743	0.622	2e-81
Q116P5	239	Protein thf1 OS=Trichodes	yes	no	0.612	0.627	0.434	9e-30
Q8YZ41	233	Protein thf1 OS=Nostoc sp	yes	no	0.595	0.626	0.410	4e-29
B0C3M8	247	Protein thf1 OS=Acaryochl	yes	no	0.604	0.599	0.401	4e-29
B2J353	235	Protein thf1 OS=Nostoc pu	yes	no	0.583	0.608	0.392	2e-28
Q3M4B2	233	Protein thf1 OS=Anabaena	yes	no	0.595	0.626	0.403	2e-28
B8HQ62	236	Protein thf1 OS=Cyanothec	yes	no	0.616	0.639	0.453	8e-28
Q5N664	254	Protein thf1 OS=Synechoco	yes	no	0.612	0.590	0.379	3e-24

>sp|Q7XAB8|THF1_SOLTU Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1

 Score =  311 bits (798), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/238 (64%), Positives = 193/238 (81%), Gaps = 5/238 (2%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++TSV+F++I Q S +RK +VSS+RS+    + FRFR++     V  R+S+S+SR ++
Sbjct: 1   MAAVTSVSFSAITQ-SAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVV 55

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            C S++    PTVA+TK+ FL  YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFAL
Sbjct: 56  HCTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFAL 115

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGYPSEEDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F 
Sbjct: 116 GFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFS 175

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           SKEGE+E + KDIA+RA  K  F YSR FAVGLFRLLELAN T+PT+LEK+ +  ++N
Sbjct: 176 SKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVN 233

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development.
Solanum tuberosum (taxid: 4113)

>sp|Q84PB7|THF1_ORYSJ Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1

 Score =  309 bits (792), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 165/183 (90%)

Query: 56  SRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYD 115
           SR +++C++TA DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQYD
Sbjct: 44  SRSVVRCVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYD 103

Query: 116 PVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASS 175
            VFALGFVTVYD+LMEGYPS EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q  +S
Sbjct: 104 AVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNS 163

Query: 176 LVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIR 235
           LVEF SK+GE+E +LKDI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+K+ +  
Sbjct: 164 LVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAAL 223

Query: 236 SLN 238
           ++N
Sbjct: 224 NIN 226

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKT0|THF1_ARATH Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1

 Score =  301 bits (772), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/241 (62%), Positives = 186/241 (77%), Gaps = 18/241 (7%)

Query: 3   SLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFR----ASSSSSRM 58
           +++S++F ++GQ+              +SNF   R   S    C +F      S S+S+ 
Sbjct: 5   AISSLSFPALGQSD------------KISNFASSRPLASAIRICTKFSRLSLNSRSTSKS 52

Query: 59  IIQCMSTAT-DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPV 117
           +I CMS  T DVPP V+ETK  FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPV
Sbjct: 53  LIHCMSNVTADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPV 111

Query: 118 FALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV 177
           FALGFVTVYD+LMEGYPS++DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV
Sbjct: 112 FALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLV 171

Query: 178 EFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSL 237
           +F SKEG++E +LKDIA RA  K  FSYSRFFAVGLFRLLELA+AT+PTVL+K+ +  ++
Sbjct: 172 DFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNI 231

Query: 238 N 238
           N
Sbjct: 232 N 232

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development. Also involved in a sugar-signaling mechanism in roots by mediating signaling between the plasma membrane and the plastid. Probably acts downstream of the plasma membrane-delimited heterotrimeric G-protein GPA1 in a D-glucose signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q116P5|THF1_TRIEI Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1

 Score =  130 bits (327), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 2/152 (1%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +DR M+
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP--SKEGEVEGL 189
           GY  +ED+ +IF A I   +EDP +YR DA+ LE+ A   +AS ++ +   SK  +    
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELAN 221
           L+D     S    F YSR FA+GLF LLE+ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVD 157

May be involved in photosynthetic membrane biogenesis.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|Q8YZ41|THF1_NOSS1 Protein thf1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thf1 PE=3 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 10/156 (6%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR ME
Sbjct: 6   TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 185
           GY  E D+E+IF A   A++++P++YR DA++L+  A+    + LV + S      ++ +
Sbjct: 66  GYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDAD 125

Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELAN 221
           ++  L+ IA       NF YSR FA+GLF LLE +N
Sbjct: 126 LQAQLQAIA----NNSNFKYSRLFAIGLFTLLEQSN 157

May be involved in photosynthetic membrane biogenesis.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|B0C3M8|THF1_ACAM1 Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 9/157 (5%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F  ++ RP+ S+Y  V++EL+V+ HL+R    ++YDP+FALG  T +DR M+
Sbjct: 6   TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMD 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF-----PSKEGEV 186
           GY  E D++AIF A   A + DP Q + D Q+L E A+ ++A  ++++      S   E+
Sbjct: 66  GYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDEL 125

Query: 187 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT 223
           +  L++IA+       F YSR FA+GLF LLEL+   
Sbjct: 126 QWQLRNIAQNPK----FKYSRLFAIGLFTLLELSEGN 158

May be involved in photosynthetic membrane biogenesis.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|B2J353|THF1_NOSP7 Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 96/153 (62%), Gaps = 10/153 (6%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+
Sbjct: 6   TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQ 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGE 185
           GY  E D+E+IF A   A+++DP+ YR DA++L+  A+G     L+       +  ++ +
Sbjct: 66  GYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDAD 125

Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLE 218
           ++  L+ IA       NF Y+R FA+G+F LLE
Sbjct: 126 LQAQLQAIA----NNPNFKYNRLFAIGVFSLLE 154

May be involved in photosynthetic membrane biogenesis.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|Q3M4B2|THF1_ANAVT Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 100/156 (64%), Gaps = 10/156 (6%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+
Sbjct: 6   TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 185
           GY  E D+E+IF A   A++++P++YR DA++L+  A+    + LV + S      ++ +
Sbjct: 66  GYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDAD 125

Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELAN 221
           ++  L+ IA       NF YSR FA+GLF LLE +N
Sbjct: 126 LQAQLQAIA----SNPNFKYSRLFAIGLFTLLEQSN 157

May be involved in photosynthetic membrane biogenesis.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

>sp|B8HQ62|THF1_CYAP4 Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 95/152 (62%), Gaps = 1/152 (0%)

Query: 70  PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 129
           P TV++TK  F   + RPI SIY  V++EL+V+ HL+R  +T+ YDPVFALG VT ++R 
Sbjct: 4   PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERF 63

Query: 130 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 189
           M+GY    D+ +IF A   A + DP+Q + DAQ+L    RGQ+  SL+++ S    + G 
Sbjct: 64  MQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGD 123

Query: 190 LKDIAERA-SGKGNFSYSRFFAVGLFRLLELA 220
            +    RA +    F YSR FAVGLF LLE A
Sbjct: 124 EQQNRLRAIASNPTFKYSRLFAVGLFTLLEQA 155

May be involved in photosynthetic membrane biogenesis.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q5N664|THF1_SYNP6 Protein thf1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=thf1 PE=3 SV=2

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 3/153 (1%)

Query: 71  PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 130
           PTV+++K  F   Y RPI  +Y  V++EL+V+ HL+    ++ YDP+FALG VT +D  M
Sbjct: 5   PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64

Query: 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 187
             Y   E    +F A   A++++PEQYR DA  + E  RG  + ++ ++ ++    G   
Sbjct: 65  SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124

Query: 188 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELA 220
            L++   +  +G+  F YSR FA+GLF LLE A
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETA 157

May be involved in photosynthetic membrane biogenesis.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
356543780	297	PREDICTED: protein THYLAKOID FORMATION1,	0.967	0.797	0.743	1e-100
356549970	297	PREDICTED: protein THYLAKOID FORMATION1,	0.967	0.797	0.731	3e-99
255636566	297	unknown [Glycine max]	0.967	0.797	0.731	5e-99
449438054	298	PREDICTED: protein THYLAKOID FORMATION 1	0.963	0.791	0.735	1e-98
255553917	299	Protein THYLAKOID FORMATION1, chloroplas	0.967	0.792	0.733	6e-98
224124656	298	predicted protein [Populus trichocarpa]	0.967	0.795	0.726	7e-98
359485791	299	PREDICTED: protein THYLAKOID FORMATION1,	0.963	0.789	0.736	3e-96
224146717	296	predicted protein [Populus trichocarpa]	0.959	0.793	0.731	3e-95
356542877	291	PREDICTED: protein THYLAKOID FORMATION1,	0.934	0.786	0.676	8e-91
388506988	287	unknown [Medicago truncatula]	0.975	0.832	0.683	8e-91

>gi|356543780|ref|XP_003540338.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/238 (74%), Positives = 208/238 (87%), Gaps = 1/238 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA+LTS++F+++   S +RKV +SSTR L S+ E F FRT    H V  RAS+S S+M++
Sbjct: 1   MAALTSLSFSAVTHCS-ERKVTLSSTRFLASSSEIFGFRTDFSYHYVGVRASNSPSKMVV 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ATDVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFAL
Sbjct: 60  QCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFAL 119

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVT+YD+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q  +SLVEF 
Sbjct: 120 GFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQKPTSLVEFS 179

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           SKEGEVEG+LKDIAERA GKG FSYSRFFAVGLFRLLELANATEPT+L+K+    ++N
Sbjct: 180 SKEGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNIN 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549970|ref|XP_003543363.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 174/238 (73%), Positives = 209/238 (87%), Gaps = 1/238 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA+LTS++F+++   S +RKV +SSTR L S+ E F FRT    H V  RAS+S+S+M++
Sbjct: 1   MAALTSLSFSAVTHCS-ERKVTLSSTRFLASSSELFGFRTDFSYHYVGVRASNSASKMVV 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ATDVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFAL
Sbjct: 60  QCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFAL 119

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVT+YD+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q+ +SLVEF 
Sbjct: 120 GFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQSPTSLVEFS 179

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           SKEGE E +LKDIAERA GKG FSYSRFFAVGLFRL+ELANATEPT+L+K+ +  ++N
Sbjct: 180 SKEGEAERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNIN 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636566|gb|ACU18621.1| unknown [Glycine max]

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/238 (73%), Positives = 209/238 (87%), Gaps = 1/238 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA+LTS++F+++   S +RKV +SSTR L S+ E F FRT    H V  RAS+S+S+M++
Sbjct: 1   MAALTSLSFSAVIHCS-ERKVTLSSTRFLASSSELFGFRTDFSYHYVGVRASNSASKMVV 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ATDVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFAL
Sbjct: 60  QCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFAL 119

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVT+YD+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q+ +SLVEF 
Sbjct: 120 GFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQSPTSLVEFS 179

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           SKEGE E +LKDIAERA GKG FSYSRFFAVGLFRL+ELANATEPT+L+K+ +  ++N
Sbjct: 180 SKEGEAERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNIN 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438054|ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like [Cucumis sativus] gi|449493105|ref|XP_004159194.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like [Cucumis sativus]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 175/238 (73%), Positives = 205/238 (86%), Gaps = 2/238 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++ S++F+++ Q S  R++ + S+RS  SNF GF FRTS+F H  R RAS+ SSRM+I
Sbjct: 1   MAAVNSISFSTLNQCS-DRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVI 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            CMS  TDV  TVAETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKRTY+YDPVFAL
Sbjct: 60  HCMSAGTDVT-TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFAL 118

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGYPS+EDREAIFQAYI AL EDPEQYRIDA+K EEWAR QTA+SLVEF 
Sbjct: 119 GFVTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFA 178

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           S+EGEVE +LKDIAERA  KGNFSYSRFFA+GLFRLLELANATEP++LEK+ +  +++
Sbjct: 179 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNID 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553917|ref|XP_002517999.1| Protein THYLAKOID FORMATION1, chloroplast precursor, putative [Ricinus communis] gi|223542981|gb|EEF44517.1| Protein THYLAKOID FORMATION1, chloroplast precursor, putative [Ricinus communis]

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 176/240 (73%), Positives = 207/240 (86%), Gaps = 3/240 (1%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLF-CHCVRFRAS-SSSSRM 58
           MA++TSV+F++I Q+  +RK   S +RS  SNF+ FRF    F CH V  +AS SSSSRM
Sbjct: 1   MAAVTSVSFSAIAQSFTERKSVASWSRSFSSNFDSFRFPVGGFSCHYVGVKASNSSSSRM 60

Query: 59  IIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVF 118
           +I CMSTATDVPPTV+ETK NFL  YK+PIPSIYNTVLQELIVQQHLMRYKR+Y+YDPVF
Sbjct: 61  LIHCMSTATDVPPTVSETKFNFLNSYKKPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVF 120

Query: 119 ALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178
           ALGFVTVYD+LM+GYPS+EDREAIFQAYI AL E+PEQYRIDA+KLE+WAR QT SSLV+
Sbjct: 121 ALGFVTVYDQLMQGYPSDEDREAIFQAYINALNEEPEQYRIDAKKLEDWARSQTPSSLVD 180

Query: 179 FPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           F SKEGEVEG+LKDIAERA G G+FSYSRFFA+GLFRLLEL+N+TEPTVLEK+ +  ++N
Sbjct: 181 FSSKEGEVEGILKDIAERA-GNGSFSYSRFFAIGLFRLLELSNSTEPTVLEKLCAALNIN 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124656|ref|XP_002319386.1| predicted protein [Populus trichocarpa] gi|222857762|gb|EEE95309.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (929), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 202/238 (84%), Gaps = 1/238 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           M ++TS++F+++ Q+S +R   VSS  S   +FEGFR R+   CH V  +AS+S+SR  I
Sbjct: 1   MTAITSLSFSAVNQSSSERNTFVSSLASRNLSFEGFRLRSVFSCHYVGVKASNSTSRTAI 60

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            CMST+TDVPPTV+ETK NFLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY YDPVF L
Sbjct: 61  HCMSTSTDVPPTVSETKSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYLYDPVFGL 120

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           G VTVYD+LMEGYPS+EDREAIFQAYI ALKEDPEQYRIDA+KLEEWAR QT SSLV+F 
Sbjct: 121 GLVTVYDQLMEGYPSDEDREAIFQAYIKALKEDPEQYRIDAKKLEEWARAQTHSSLVDFS 180

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           SKEGE+EG+LK IAERA+  GNFSYSRFFAVGLFRLLEL+NA+EPTVLEK+ S  ++N
Sbjct: 181 SKEGEIEGILKGIAERAAS-GNFSYSRFFAVGLFRLLELSNASEPTVLEKLCSALNIN 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485791|ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Vitis vinifera]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 179/243 (73%), Positives = 211/243 (86%), Gaps = 7/243 (2%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++TS++F+++GQ+S +RKV V +TRS  S FE FRFR + +   VR  +SSSSSRM++
Sbjct: 1   MAAVTSLSFSALGQSS-ERKVPVPTTRSFASAFEAFRFRANFYAVGVRSSSSSSSSRMVV 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ TDVP TV+ETKMNFLK YKRPIPSIYNT+LQEL+VQQHLMRYKRTY+YD VFAL
Sbjct: 60  QCMSSVTDVP-TVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFAL 118

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LM+GYPS+EDR+ IFQ YI AL+EDPEQYR DAQ LEEWAR QTASSLVEF 
Sbjct: 119 GFVTVYDQLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFS 178

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV-----ISIR 235
           SKEGEVEG+LKDIAERA GKG+FSYSRFFA+GLFRLLELANATEPT+LEK+     IS R
Sbjct: 179 SKEGEVEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKR 238

Query: 236 SLN 238
           S++
Sbjct: 239 SVD 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146717|ref|XP_002326111.1| predicted protein [Populus trichocarpa] gi|222862986|gb|EEF00493.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/238 (73%), Positives = 207/238 (86%), Gaps = 3/238 (1%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++T V+F++I Q+S  R+   +  R+L   FEGFRFR+S  CH V  RAS+S+SRM+I
Sbjct: 1   MAAVTPVSFSAISQSSSDRRAFCTVARNL--GFEGFRFRSSFSCHYVGVRASNSTSRMVI 58

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            CMST+TDVPPTVA+TK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YK+T++YDPVF L
Sbjct: 59  HCMSTSTDVPPTVADTKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKKTFRYDPVFGL 118

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGYPS+EDREAIFQAYI AL+EDPEQYRIDA+KLEEWAR QT SSLV+F 
Sbjct: 119 GFVTVYDQLMEGYPSDEDREAIFQAYIKALEEDPEQYRIDAKKLEEWARAQTPSSLVDFS 178

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           S+EGE+EG LKDIAER +  GNFSYSRFFAVGLFRLLEL+NA+EPTVLEK+ S  ++N
Sbjct: 179 SREGEIEGTLKDIAERVAS-GNFSYSRFFAVGLFRLLELSNASEPTVLEKLCSALNIN 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542877|ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 159/235 (67%), Positives = 198/235 (84%), Gaps = 6/235 (2%)

Query: 4   LTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCM 63
           ++S +F+++ Q+S QR +      +L SN   FRFR    C  V  RAS+S+S+M+++C 
Sbjct: 5   ISSFSFSTLTQSSSQRNLT-----TLSSNSPTFRFRVGFSCLNVGVRASNSASKMVVRCS 59

Query: 64  STATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFV 123
           S+  + PPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKR+Y+YD VFALGFV
Sbjct: 60  SSVAE-PPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFV 118

Query: 124 TVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE 183
           TVY++LMEGYPS+EDR+AIFQAYI ALKEDPEQYR+DA+KLEEWAR Q  +SL+EF S+E
Sbjct: 119 TVYEQLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARSQNPNSLLEFSSRE 178

Query: 184 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
           GEVEG+LKDIAERA GKG+FSYSRFFA+GLFRLLELANA EPT+LEK+ ++ ++N
Sbjct: 179 GEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVN 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506988|gb|AFK41560.1| unknown [Medicago truncatula]

 Score =  338 bits (868), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 166/243 (68%), Positives = 200/243 (82%), Gaps = 4/243 (1%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA+LTS++F++  Q S QRK  +SSTR L S+ + F  RT    HCV  R  +S+S+M+I
Sbjct: 1   MAALTSLSFSATSQCS-QRKSTLSSTRFLASSSDMFGIRTDSSYHCVGVRVGNSASKMVI 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ TDVP +V+ETK+NFLK YKRPIPSIYN VLQELIVQ HLMRYK +YQYD VFAL
Sbjct: 60  QCMSSVTDVP-SVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFAL 118

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGY SEE+R+ IF+AYI ALKEDPEQYRIDA+KLE+WA+ Q + SLVEF 
Sbjct: 119 GFVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRIDAKKLEDWAKAQNSISLVEFS 178

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWM 240
           S+EGEVEG+LKDIA+RA  KG FSYSRFFAVGLFRLLELANATEPT+L+K+ +  +LN  
Sbjct: 179 SREGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCA--ALNID 236

Query: 241 TRT 243
            R+
Sbjct: 237 KRS 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2051353	300	PSB29 "AT2G20890" [Arabidopsis	0.848	0.693	0.682	2e-72
UNIPROTKB|P73956	240	thf1 "Protein thf1" [Synechocy	0.595	0.608	0.360	3.5e-20

TAIR|locus:2051353 PSB29 "AT2G20890" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 146/214 (68%), Positives = 174/214 (81%)

Query:    30 VSNFEGFRFRTSLFCHCVRFRA----SSSSSRMIIQCMSTAT-DVPPTVAETKMNFLKLY 84
             +SNF   R   S    C +F      S S+S+ +I CMS  T DVPP V+ETK  FLK Y
Sbjct:    20 ISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTADVPP-VSETKSKFLKAY 78

Query:    85 KRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQ 144
             KRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVTVYD+LMEGYPS++DR+AIF+
Sbjct:    79 KRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFK 138

Query:   145 AYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFS 204
             AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++E +LKDIA RA  K  FS
Sbjct:   139 AYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFS 198

Query:   205 YSRFFAVGLFRLLELANATEPTVLEKVISIRSLN 238
             YSRFFAVGLFRLLELA+AT+PTVL+K+ +  ++N
Sbjct:   199 YSRFFAVGLFRLLELASATDPTVLDKLCASLNIN 232

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010027 "thylakoid membrane organization" evidence=IEA;RCA;IMP

GO:0015979 "photosynthesis" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010319 "stromule" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=ISS;IDA

GO:0010207 "photosystem II assembly" evidence=RCA;TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IPI

GO:0009527 "plastid outer membrane" evidence=IDA

GO:0009528 "plastid inner membrane" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|P73956 thf1 "Protein thf1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 53/147 (36%), Positives = 79/147 (53%)

Query:    72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
             TV++ K  F   Y RPI SIY   ++EL+V+ HL+     + YDP+FALG VT ++  M+
Sbjct:     6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65

Query:   132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP-SKEGEVEGLL 190
             GY   E   AIF A    + ++P+Q R DA+ +   A      + V    S++   + LL
Sbjct:    66 GYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNVAASAHHIGLDAWVTAAASEQASGDNLL 125

Query:   191 KDIAERASGKGNFSYSRFFAVGLFRLL 217
              +       +  F YSR FA+GL+ LL
Sbjct:   126 LNTLTGIHQRHKFKYSRLFAIGLYTLL 152


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       245   0.00099  113 3  11 22  0.40    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  175 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.85u 0.13s 20.98t   Elapsed:  00:00:00
  Total cpu time:  20.85u 0.13s 20.98t   Elapsed:  00:00:00
  Start:  Sat May 11 10:23:20 2013   End:  Sat May 11 10:23:20 2013

GO:0030096 "plasma membrane-derived thylakoid photosystem II" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKT0	THF1_ARATH	No assigned EC number	0.6224	0.9102	0.7433	yes	no
Q84PB7	THF1_ORYSJ	No assigned EC number	0.7759	0.7469	0.6376	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
PLN00047	283	PLN00047, PLN00047, photosystem II biogenesis prot	1e-128
PLN03060	206	PLN03060, PLN03060, inositol phosphatase-like prot	2e-86
pfam11264	216	pfam11264, ThylakoidFormat, Thylakoid formation pr	3e-69
PRK13266	225	PRK13266, PRK13266, Thf1-like protein; Reviewed	3e-46
TIGR03060	214	TIGR03060, PS_II_psb29, photosystem II biogenesis	8e-41

>gnl|CDD|177679 PLN00047, PLN00047, photosystem II biogenesis protein Psb29; Provisional

 Score =  364 bits (936), Expect = e-128
 Identities = 164/243 (67%), Positives = 191/243 (78%), Gaps = 20/243 (8%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++ SV+F ++GQ+S  R   VS+ RS  S FE                AS S+SR ++
Sbjct: 1   MAAVCSVSFPALGQSSKARPAPVSAARSFASRFE---------------VASRSTSRRVV 45

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            CM+  TDVPPTVAETK  FLK YKRPIPSIY+TVLQEL+VQQHLMRYK+TY+YDPVFAL
Sbjct: 46  HCMAAVTDVPPTVAETKAKFLKSYKRPIPSIYSTVLQELLVQQHLMRYKKTYRYDPVFAL 105

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGYPS+EDR+AIF+AYI AL EDPEQYR DA KLEEWAR QT SSLV+F 
Sbjct: 106 GFVTVYDQLMEGYPSDEDRDAIFKAYIKALGEDPEQYRKDAAKLEEWARSQTGSSLVDFS 165

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV-----ISIR 235
           SKEGE+EG+LKDIAERA  KG FSYSRFFA+GLFRLLELANATEPT LEK+     I+ R
Sbjct: 166 SKEGEIEGILKDIAERAGSKGKFSYSRFFAIGLFRLLELANATEPTALEKLCAALNINKR 225

Query: 236 SLN 238
           S++
Sbjct: 226 SVD 228

Length = 283

>gnl|CDD|215554 PLN03060, PLN03060, inositol phosphatase-like protein; Provisional

 Score =  255 bits (652), Expect = 2e-86
 Identities = 115/173 (66%), Positives = 144/173 (83%), Gaps = 5/173 (2%)

Query: 71  PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 130
           PTVA+TK +FLK Y++PIPSIY+ V+QEL+VQQHLMRY  TY+YDP+FALGFVTVYD+LM
Sbjct: 3   PTVADTKASFLKAYRKPIPSIYSNVIQELLVQQHLMRYNATYKYDPIFALGFVTVYDQLM 62

Query: 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL 190
           +GYP+  DR+AIF+AYI AL EDP+QYR DA+KLEEWA  Q+AS + +F S +GEVE +L
Sbjct: 63  DGYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVL 122

Query: 191 KDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV-----ISIRSLN 238
           KDIAERA+GK  F YSRFFA+GLFRLLE A A++P VLEK+     +S RS++
Sbjct: 123 KDIAERAAGKTKFHYSRFFAIGLFRLLECAKASDPAVLEKLSKALNVSKRSVD 175

Length = 206

>gnl|CDD|221050 pfam11264, ThylakoidFormat, Thylakoid formation protein

 Score =  211 bits (540), Expect = 3e-69
 Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV+++K  F   + RPIPS+Y  V+ EL+V+ HL+ +   ++YDP+FALG VTV+DR ME
Sbjct: 1   TVSDSKRAFHAAFPRPIPSLYRRVVDELLVELHLLSHNSDFKYDPLFALGLVTVFDRFME 60

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS-KEGEVEGLL 190
           GY  EE ++AIF A  ++L  DPEQ R DA++LEE A+  +   ++ + S K G     L
Sbjct: 61  GYRPEEHKDAIFNALCSSLGFDPEQLRADAEQLEEAAKSHSLEEILSWLSQKGGGAPNPL 120

Query: 191 KDIAERASGKGNFSYSRFFAVGLFRLLELANA 222
           +D  +  +    F YSR FA+GLF LLE A  
Sbjct: 121 QDTLQAIASNSKFHYSRLFAIGLFTLLEEAKG 152

THF1 is localised to the outer plastid membrane and the stroma. THF1 has a role in sugar signalling. THF1 is also thought to have a role in chloroplast and leaf development. THF1 has been shown to play a crucial role in vesicle-mediated thylakoid membrane biogenesis. Length = 216

>gnl|CDD|237324 PRK13266, PRK13266, Thf1-like protein; Reviewed

 Score =  153 bits (389), Expect = 3e-46
 Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 68  DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYD 127
           +   TV+++K  F   + RPI SIY  V+ EL+V+ HL+     ++YDP+FALG VTV+D
Sbjct: 2   NNRRTVSDSKRAFYAAFPRPINSIYRRVVDELLVELHLLSVNSDFKYDPLFALGLVTVFD 61

Query: 128 RLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSK--EGE 185
           R M+GY  EE +++IF A   A+  DPEQ R DA++L E A+G++   ++ + ++   GE
Sbjct: 62  RFMQGYRPEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGE 121

Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELAN 221
             GLL  +   A+    F YSR FA+GL+ LLE A 
Sbjct: 122 PGGLLATLLAIANNS-KFKYSRLFAIGLYTLLEEAQ 156

Length = 225

>gnl|CDD|213765 TIGR03060, PS_II_psb29, photosystem II biogenesis protein Psp29

 Score =  139 bits (351), Expect = 8e-41
 Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 69  VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 128
              TV+++K  F   + R IP +Y  V+ EL+V+ HL+ ++  ++YDP+FALG VTV+DR
Sbjct: 3   ERRTVSDSKRAFHAAFPRVIPPLYRRVVDELLVELHLLSHQSDFKYDPLFALGLVTVFDR 62

Query: 129 LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 188
            MEGY  EE  +A+F A   +   DPEQ R DA++L E A+G+    ++ + ++      
Sbjct: 63  FMEGYRPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANL-SN 121

Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLLELAN 221
              D  +  +G+  F YSR FA+GL+ LLE A 
Sbjct: 122 GGGDTLQGIAGRHKFKYSRLFAIGLYSLLEEAA 154

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function [Energy metabolism, Photosynthesis]. Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PLN00047	283	photosystem II biogenesis protein Psb29; Provision	100.0
PLN03060	206	inositol phosphatase-like protein; Provisional	100.0
PF11264	216	ThylakoidFormat: Thylakoid formation protein; Inte	100.0
PRK13266	225	Thf1-like protein; Reviewed	100.0
TIGR03060	214	PS_II_psb29 photosystem II biogenesis protein Psp2	100.0
PF11264	216	ThylakoidFormat: Thylakoid formation protein; Inte	94.9
PRK13266	225	Thf1-like protein; Reviewed	94.81
TIGR03060	214	PS_II_psb29 photosystem II biogenesis protein Psp2	94.51
PLN03060	206	inositol phosphatase-like protein; Provisional	91.71
PLN00047	283	photosystem II biogenesis protein Psb29; Provision	89.84

>PLN00047 photosystem II biogenesis protein Psb29; Provisional

Probab=100.00  E-value=3.2e-87  Score=607.66  Aligned_cols=225  Identities=68%  Similarity=1.064  Sum_probs=212.4

Q ss_pred             CCccccccccccccccccccccccccccccccccccccccccceeeeeeeecCCCcceeeeeeccCCCCCCchhHhHHHH
Q 025969            1 MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNF   80 (245)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~TVSDTKr~F   80 (245)
                      |||++|++|++++|++  ++++..++|+++   ++|+|+         +|++++ +|+||+||+++++++||||||||+|
T Consensus         1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~TVSDTKr~F   65 (283)
T PLN00047          1 MAAVCSVSFPALGQSS--KARPAPVSAARS---FASRFE---------VASRST-SRRVVHCMAAVTDVPPTVAETKAKF   65 (283)
T ss_pred             CccccccChHhhcccc--cccCCccchhhh---hccccc---------cccccc-cceeeeehhhccCCCCcHHHHHHHH
Confidence            8999999999999997  455555557775   667776         676654 5999999999999999999999999


Q ss_pred             HhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 025969           81 LKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRID  160 (245)
Q Consensus        81 ~~~y~rPIpsIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~D  160 (245)
                      |++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||+|+|+||+|||+|
T Consensus        66 ~~~yp~pIpsiYrrvvdELLVElHLLs~n~~F~yDplFALGlVtvfd~fm~GY~Pee~~~~IF~Alc~a~g~Dp~qyr~d  145 (283)
T PLN00047         66 LKSYKRPIPSIYSTVLQELLVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFKAYIKALGEDPEQYRKD  145 (283)
T ss_pred             HHhCCCCCcHHHHHHHHHHHHHHHHHHhccCceeCchhhhhhHHHHHHHHccCCChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCChHHHHHHHHhcCCCcc
Q 025969          161 AQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKVISIRSLNWM  240 (245)
Q Consensus       161 A~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~dp~~L~kl~~~l~l~~~  240 (245)
                      |++|++||++++.+|+++|+...|+++..|++||+++++|++||||||||||||+|||+++++||+.|+++|++|||++.
T Consensus       146 A~~l~~~A~~~s~~~l~~~l~~~~~l~~~l~~IA~~a~~~~~f~YSRlfAIGLf~LLe~a~~~d~~~l~~l~e~Lgls~~  225 (283)
T PLN00047        146 AAKLEEWARSQTGSSLVDFSSKEGEIEGILKDIAERAGSKGKFSYSRFFAIGLFRLLELANATEPTALEKLCAALNINKR  225 (283)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhcchHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999998887899999999999999999999999999999999999999974

>PLN03060 inositol phosphatase-like protein; Provisional

Probab=100.00  E-value=2.6e-76  Score=517.47  Aligned_cols=172  Identities=65%  Similarity=1.088  Sum_probs=167.1

Q ss_pred             CCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 025969           70 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITA  149 (245)
Q Consensus        70 ~~TVSDTKr~F~~~y~rPIpsIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~A  149 (245)
                      +||||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||+|
T Consensus         2 ~~TVsDtKr~F~~~~p~pI~siYrrvv~ELLVE~HLl~~n~~f~yD~lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a   81 (206)
T PLN03060          2 VPTVADTKASFLKAYRKPIPSIYSNVIQELLVQQHLMRYNATYKYDPIFALGFVTVYDQLMDGYPNATDRDAIFKAYIEA   81 (206)
T ss_pred             CCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCChHHHH
Q 025969          150 LKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLE  229 (245)
Q Consensus       150 lg~DP~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~dp~~L~  229 (245)
                      +|+||+|||+||++|++||+|++.++|.+|++++|+.+..|+++++++++|++||||||||||||+|||.++++||+.++
T Consensus        82 ~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~LLe~a~~~d~~~l~  161 (206)
T PLN03060         82 LGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRLLECAKASDPAVLE  161 (206)
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999999999999999998888888888888889999999999999999999999999999999


Q ss_pred             HHHHhcCCCccc
Q 025969          230 KVISIRSLNWMT  241 (245)
Q Consensus       230 kl~~~l~l~~~~  241 (245)
                      ++|++|||++.+
T Consensus       162 ~l~~~L~ls~~k  173 (206)
T PLN03060        162 KLSKALNVSKRS  173 (206)
T ss_pred             HHHHHcCCCHHH
Confidence            999999999753

>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp

Probab=100.00  E-value=4.1e-74  Score=506.36  Aligned_cols=169  Identities=51%  Similarity=0.869  Sum_probs=160.6

Q ss_pred             chhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 025969           72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALK  151 (245)
Q Consensus        72 TVSDTKr~F~~~y~rPIpsIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg  151 (245)
                      |||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||+|+|
T Consensus         1 TVsDtKr~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~   80 (216)
T PF11264_consen    1 TVSDTKRAFYKAFPRPIPSIYRRVVDELLVELHLLSVNKDFQYDPLFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALG   80 (216)
T ss_pred             ChhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCccccccccCC-cchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCC-------C
Q 025969          152 EDPEQYRIDAQKLEEWARGQTASSLVEFPSK-EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------T  223 (245)
Q Consensus       152 ~DP~qyR~DA~~l~~~A~~~s~~~l~~~~~~-~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~-------~  223 (245)
                      +||+|||+||++|++||+|++.+||.+|+++ .++.++.|++++.+|++|++||||||||||||+|||.+++       +
T Consensus        81 ~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~  160 (216)
T PF11264_consen   81 FDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFRLLELAGADLVKDEEK  160 (216)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccChhh
Confidence            9999999999999999999999999999987 4566777777777788899999999999999999999988       3


Q ss_pred             ChHHHHHHHHhcCCCcc
Q 025969          224 EPTVLEKVISIRSLNWM  240 (245)
Q Consensus       224 dp~~L~kl~~~l~l~~~  240 (245)
                      +|+.++++|++||||..
T Consensus       161 ~~~~l~~l~~~l~ls~~  177 (216)
T PF11264_consen  161 RPEALEKLSEALGLSKE  177 (216)
T ss_pred             HHHHHHHHHHHcCCCHH
Confidence            47999999999999974

(strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II

>PRK13266 Thf1-like protein; Reviewed

Probab=100.00  E-value=7.1e-74  Score=507.51  Aligned_cols=172  Identities=39%  Similarity=0.694  Sum_probs=159.6

Q ss_pred             CCCCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHH
Q 025969           68 DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYI  147 (245)
Q Consensus        68 ~~~~TVSDTKr~F~~~y~rPIpsIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc  147 (245)
                      +++||||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||
T Consensus         2 ~~~~TVSDtKr~F~~~~p~pI~siYrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc   81 (225)
T PRK13266          2 NNRRTVSDSKRAFYAAFPRPINSIYRRVVDELLVELHLLSVNSDFKYDPLFALGLVTVFDRFMQGYRPEEHKDSIFNALC   81 (225)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCc--chhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCC---
Q 025969          148 TALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE--GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA---  222 (245)
Q Consensus       148 ~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~~~~~~--g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~---  222 (245)
                      +|+|+||+|||+||++|++||+|++.+||.+|++++  |+++.+++.++ .+++|++||||||||||||+|||.+++   
T Consensus        82 ~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~-~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~  160 (225)
T PRK13266         82 QAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGEPGGLLATLL-AIANNSKFKYSRLFAIGLYTLLEEAQPDLV  160 (225)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccccchhHHHHHH-HHhcCCCCchHHHHHHHHHHHHHhcCcccc
Confidence            999999999999999999999999999999999964  45555555555 455799999999999999999999987   


Q ss_pred             CCh----HHHHHHHHhcCCCcc
Q 025969          223 TEP----TVLEKVISIRSLNWM  240 (245)
Q Consensus       223 ~dp----~~L~kl~~~l~l~~~  240 (245)
                      +||    +.++++|++||||+.
T Consensus       161 ~d~~~~~~~l~~l~~~L~ls~~  182 (225)
T PRK13266        161 KDEEKLNEALKDISEGLGLSKE  182 (225)
T ss_pred             cCHHHHHHHHHHHHHHcCCCHH
Confidence            466    689999999999874

>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29

Probab=100.00  E-value=1e-73  Score=503.45  Aligned_cols=169  Identities=38%  Similarity=0.669  Sum_probs=156.6

Q ss_pred             CCCCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHH
Q 025969           68 DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYI  147 (245)
Q Consensus        68 ~~~~TVSDTKr~F~~~y~rPIpsIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc  147 (245)
                      +++||||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||
T Consensus         2 ~~~~TVSDtKr~F~~~~p~pI~siYrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc   81 (214)
T TIGR03060         2 TERRTVSDSKRAFHAAFPRVIPPLYRRVVDELLVELHLLSHQSDFKYDPLFALGLVTVFDRFMEGYRPEEHLDALFDALC   81 (214)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcch--hHH-HHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCC-
Q 025969          148 TALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE--VEG-LLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT-  223 (245)
Q Consensus       148 ~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~--~~~-~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~-  223 (245)
                      +|+|+||+|||+||++|++||+|++.++|.+|++++|+  .+. .|++||    +|++||||||||||||+|||.+++. 
T Consensus        82 ~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~l~~ia----~n~~f~YSRl~AIGL~~LLe~a~~~~  157 (214)
T TIGR03060        82 NSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANLSNGGGDTLQGIA----GRHKFKYSRLFAIGLYSLLEEAAPDK  157 (214)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccCCcchhHHHHHh----cCCCcchHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999987543  222 566665    5999999999999999999998863 


Q ss_pred             --C----hHHHHHHHHhcCCCcc
Q 025969          224 --E----PTVLEKVISIRSLNWM  240 (245)
Q Consensus       224 --d----p~~L~kl~~~l~l~~~  240 (245)
                        |    ++.++++|++||||+.
T Consensus       158 ~~d~~~~~~~l~~l~~~L~ls~~  180 (214)
T TIGR03060       158 DIDEEDLNEILKELSEALGLSYD  180 (214)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCHH
Confidence              4    5689999999999874

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.

>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp

Probab=94.90  E-value=0.035  Score=50.10  Aligned_cols=57  Identities=19%  Similarity=0.294  Sum_probs=47.7

Q ss_pred             hcccccccccccchhhHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCHHHHHHHHH
Q 025969          106 MRYKRTYQYDPVFALGFVTVYDRLME-GYPSEEDREAIFQAYITALKEDPEQYRIDAQ  162 (245)
Q Consensus       106 Ls~n~~F~YDplFALG~VTvFd~fmq-GY~peed~~~IF~Alc~Alg~DP~qyR~DA~  162 (245)
                      ..-|..|.|.-+||+|+.+..+.--- .-..++++..+.+.||+++|+.++.+.+|-.
T Consensus       127 ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~kDL~  184 (216)
T PF11264_consen  127 IASNPKFKYSRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEKDLD  184 (216)
T ss_pred             HhcCCCCchHHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHhhHH
Confidence            34578999999999999999987654 2445677888999999999999999988864

(strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II

>PRK13266 Thf1-like protein; Reviewed

Probab=94.81  E-value=0.056  Score=49.13  Aligned_cols=63  Identities=17%  Similarity=0.292  Sum_probs=50.7

Q ss_pred             HHHHHhhhcccccccccccchhhHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 025969           99 LIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEG-YPSEEDREAIFQAYITALKEDPEQYRIDA  161 (245)
Q Consensus        99 LLVElHLLs~n~~F~YDplFALG~VTvFd~fmqG-Y~peed~~~IF~Alc~Alg~DP~qyR~DA  161 (245)
                      |+-.++=..-|..|.|.-+||+|+.+..+.---. ...++++..+.+.+|+++|+..+.+.+|-
T Consensus       125 l~~~l~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL  188 (225)
T PRK13266        125 LLATLLAIANNSKFKYSRLFAIGLYTLLEEAQPDLVKDEEKLNEALKDISEGLGLSKEKVEKDL  188 (225)
T ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhH
Confidence            3334444457899999999999999999876542 45667889999999999999999888775

>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29

Probab=94.51  E-value=0.048  Score=49.29  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=47.8

Q ss_pred             HhhhcccccccccccchhhHHHHHHHHhcCC--CCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 025969          103 QHLMRYKRTYQYDPVFALGFVTVYDRLMEGY--PSEEDREAIFQAYITALKEDPEQYRIDA  161 (245)
Q Consensus       103 lHLLs~n~~F~YDplFALG~VTvFd~fmqGY--~peed~~~IF~Alc~Alg~DP~qyR~DA  161 (245)
                      ++=..-|..|.|.-+||+|+.+..+. .+|.  ..++++..+.+.+|+++|+..+.+.+|-
T Consensus       127 l~~ia~n~~f~YSRl~AIGL~~LLe~-a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL  186 (214)
T TIGR03060       127 LQGIAGRHKFKYSRLFAIGLYSLLEE-AAPDKDIDEEDLNEILKELSEALGLSYDRVEKDL  186 (214)
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHh-cCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhH
Confidence            33444789999999999999999984 4443  4667788999999999999999888775

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.

>PLN03060 inositol phosphatase-like protein; Provisional

Probab=91.71  E-value=0.17  Score=45.53  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=40.9

Q ss_pred             hcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 025969          106 MRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDA  161 (245)
Q Consensus       106 Ls~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA  161 (245)
                      ..-|..|.|.-+||+|+.+..+.--..     |. .+.+.+|+++|+..+.+.+|-
T Consensus       129 ~~~~~~f~YSRl~AIGL~~LLe~a~~~-----d~-~~l~~l~~~L~ls~~kv~kDL  178 (206)
T PLN03060        129 AAGKTKFHYSRFFAIGLFRLLECAKAS-----DP-AVLEKLSKALNVSKRSVDRDL  178 (206)
T ss_pred             hhcCCCcchHHHHHHHHHHHHHHcCCC-----CH-HHHHHHHHHcCCCHHHHHhhH
Confidence            336899999999999999999876332     22 289999999999998888775

>PLN00047 photosystem II biogenesis protein Psb29; Provisional

Probab=89.84  E-value=0.31  Score=45.86  Aligned_cols=48  Identities=17%  Similarity=0.291  Sum_probs=39.2

Q ss_pred             ccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 025969          108 YKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDA  161 (245)
Q Consensus       108 ~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA  161 (245)
                      -|..|.|.-+||+|+.+..+.--- .    |. .+.+-||+++|+.++.+.+|-
T Consensus       184 ~~~~f~YSRlfAIGLf~LLe~a~~-~----d~-~~l~~l~e~Lgls~~kv~KDL  231 (283)
T PLN00047        184 SKGKFSYSRFFAIGLFRLLELANA-T----EP-TALEKLCAALNINKRSVDRDL  231 (283)
T ss_pred             cCCCcchHHHHHHHHHHHHHhcCC-C----CH-HHHHHHHHHcCCCHHHHHhhH
Confidence            579999999999999998876533 2    22 388889999999999988775

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00