Citrus Sinensis ID: 025970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccEEEEcccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHcccccHHHHHHHHHHHHcccHcccEEEEEccccccHHHHHHHHHHHcccEEEEHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHcccEEEEcccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHccEEccccccEEEcccEccccccEccccccEcEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
massavaledvpsvDMMTELLRRFkcsskpdkrlvligppgsgkgtqspvikdeyclcHLATGDMLRSAVAaktplgikakeamdkgelvsdDLVVGIIDQamkkpscekgfildgfprtVVQAEKLDEMLEKQGTKIDKVLNFAiddsileeritgrwihpasgrsyhtkfappkvhgfddvtgepliqrkDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVlaqlhaekppkeVTVEVQKVLSS
Flexible Loop (DISEMBL)
massavaledvpsvdMMTELLRRfkcsskpdkrlvligppgsgkgtqspviKDEYCLCHLATGDMLRSAVAAKTPLGIkakeamdkgelvSDDLVVGIIDQAMkkpscekgfildGFPRTVVQAEKLDEMLEkqgtkidkvLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEafhkqtepvIDYYAKKGVLAQlhaekppkevtVEVQKVLSS
Low Complexity Region (SEG)
MASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS
Disordered region (IsUnstruct)
********************L**F**********VL*************VIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQ*****AQVLKSRLEAFHKQTEPVIDYYAKKGVLAQL*******************
Disordered Region (DISOPRED)
***********PSVDMM***************RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS*
Disordered Region (DISEMBL)
********EDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPP*************
Disordered Region (DISPRO)
*********DVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q08480	243	Adenylate kinase B OS=Ory	yes	no	0.987	0.995	0.884	1e-127
Q08479	241	Adenylate kinase A OS=Ory	no	no	0.979	0.995	0.870	1e-123
O82514	246	Adenylate kinase 1 OS=Ara	yes	no	0.991	0.987	0.798	1e-116
Q9FK35	248	Adenylate kinase 2 OS=Ara	no	no	0.951	0.939	0.793	1e-111
Q54QJ9	276	Adenylate kinase 2, mitoc	yes	no	0.869	0.771	0.586	3e-72
Q1HQK0	241	Adenylate kinase 2, mitoc	N/A	no	0.861	0.875	0.582	8e-72
Q74ZL1	277	Adenylate kinase 1 OS=Ash	yes	no	0.861	0.761	0.584	1e-71
Q7QJX9	240	Adenylate kinase 2, mitoc	yes	no	0.857	0.875	0.571	5e-71
B4KLY1	240	Adenylate kinase 2, mitoc	N/A	no	0.853	0.870	0.569	7e-71
Q9U915	240	Adenylate kinase 2, mitoc	yes	no	0.853	0.870	0.578	8e-71

>sp|Q08480|KAD2_ORYSJ Adenylate kinase B OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1

 Score =  453 bits (1166), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/242 (88%), Positives = 233/242 (96%)

Query: 3   SSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62
           ++A  LEDVPS+D+M ELLRR KCSSKPDKRL+L+GPPGSGKGTQSP+IKDEYCLCHLAT
Sbjct: 2   AAAANLEDVPSMDLMNELLRRMKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 61

Query: 63  GDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVV 122
           GDMLR+AVAAKTPLG+KAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGFILDGFPRTVV
Sbjct: 62  GDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVV 121

Query: 123 QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDD 182
           QA+KLDEMLEK+GTK+DKVLNFAIDDSILEERITGRWIHP+SGRSYHTKFAPPKV G DD
Sbjct: 122 QAQKLDEMLEKKGTKVDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKVPGVDD 181

Query: 183 VTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKV 242
           VTGEPLIQRKDDTA+VLKSRLEAFHKQTEPVIDYY+KK ++A LHAEKPPKEVT EVQKV
Sbjct: 182 VTGEPLIQRKDDTAEVLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTAEVQKV 241

Query: 243 LS 244
           LS
Sbjct: 242 LS 243

This small ubiquitous enzyme is essential for maintenance and cell growth.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q08479|KAD1_ORYSJ Adenylate kinase A OS=Oryza sativa subsp. japonica GN=ADK-A PE=2 SV=1

 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/240 (87%), Positives = 226/240 (94%)

Query: 5   AVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64
           A  LEDVPS+++MTELLRR KCSSKPDKR++L+GPPG GKGTQSP+IKDE+CLCHLATGD
Sbjct: 2   AANLEDVPSMELMTELLRRMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATGD 61

Query: 65  MLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQA 124
           MLR+AVAAKTPLGIKAKEAMDKGELVSDDLVVGIID+AMKK SC+KGFILDGFPRTVVQA
Sbjct: 62  MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQA 121

Query: 125 EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT 184
           +KLDEML KQGTKIDKVLNFAIDD+ILEERITGRWIHP+SGRSYHTKFAPPK  G DDVT
Sbjct: 122 QKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVT 181

Query: 185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           GEPLIQRKDDTA VLKSRLEAFH QT+PVIDYY KKG++A LHAEKPPKEVTVEVQK LS
Sbjct: 182 GEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241

This small ubiquitous enzyme is essential for maintenance and cell growth.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|O82514|KAD1_ARATH Adenylate kinase 1 OS=Arabidopsis thaliana GN=ADK1 PE=2 SV=2

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/243 (79%), Positives = 218/243 (89%)

Query: 2   ASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61
             +A  LEDV +VD+M+ELLRR KCS KPDKRL+ IGPPGSGKGTQSPV+KDEYCLCHL+
Sbjct: 4   GGAAADLEDVQTVDLMSELLRRLKCSQKPDKRLIFIGPPGSGKGTQSPVVKDEYCLCHLS 63

Query: 62  TGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTV 121
           TGDMLR+AVA+KTPLG+KAKEAM+KGELVSDDLVVGIID+AM KP C+KGFILDGFPRTV
Sbjct: 64  TGDMLRAAVASKTPLGVKAKEAMEKGELVSDDLVVGIIDEAMNKPKCQKGFILDGFPRTV 123

Query: 122 VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD 181
            QAEKLDEML+++GT+IDKVLNFAIDD+ILEERITGRWIHP+SGRSYHTKFAPPK  G D
Sbjct: 124 TQAEKLDEMLKRRGTEIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGVD 183

Query: 182 DVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQK 241
           D+TGEPLIQRKDD A VLKSRL AFH QT+PVIDYYAKK VL  + AEK P+EVT EV+K
Sbjct: 184 DITGEPLIQRKDDNADVLKSRLAAFHSQTQPVIDYYAKKAVLTNIQAEKAPQEVTSEVKK 243

Query: 242 VLS 244
            LS
Sbjct: 244 ALS 246

This small ubiquitous enzyme is essential for maintenance and cell growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9FK35|KAD2_ARATH Adenylate kinase 2 OS=Arabidopsis thaliana GN=ADK2 PE=2 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/233 (79%), Positives = 214/233 (91%)

Query: 2   ASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61
           ++++V +ED+ +VD+M+ELLRR KC+SKPDKRLV IGPPGSGKGTQSPVIKDE+CLCHL+
Sbjct: 5   SAASVDMEDIQTVDLMSELLRRMKCASKPDKRLVFIGPPGSGKGTQSPVIKDEFCLCHLS 64

Query: 62  TGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTV 121
           TGDMLR+AVAAKTPLG+KAKEAMDKGELVSDDLVVGI+D+AM +P C+KGFILDGFPRTV
Sbjct: 65  TGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIMDEAMNRPKCQKGFILDGFPRTV 124

Query: 122 VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD 181
            QAEKLDEML ++G +IDKVLNFAIDDS+LEERITGRWIHP+SGRSYHTKFAPPKV G D
Sbjct: 125 TQAEKLDEMLNRRGAQIDKVLNFAIDDSVLEERITGRWIHPSSGRSYHTKFAPPKVPGVD 184

Query: 182 DVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKE 234
           D+TGEPLIQRKDD A VL+SRL+AFHKQT+PVIDYYAKK  L  + AEK P+E
Sbjct: 185 DLTGEPLIQRKDDNADVLRSRLDAFHKQTQPVIDYYAKKENLVNIPAEKAPEE 237

This small ubiquitous enzyme is essential for maintenance and cell growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q54QJ9|KAD2_DICDI Adenylate kinase 2, mitochondrial OS=Dictyostelium discoideum GN=adkA PE=3 SV=1

 Score =  271 bits (693), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 163/213 (76%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+V IGPPGSGKGTQ+P++K++YCLCHL+TGDMLR+A+   T  G +AK  MD+G LV D
Sbjct: 30  RVVFIGPPGSGKGTQAPLVKEDYCLCHLSTGDMLRAAIEQGTETGKQAKTIMDQGGLVPD 89

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +++V +I + ++ P C+KGFILDGFPRTV QAEKLD+ML +   KID VL+FAIDDS+L 
Sbjct: 90  EVMVNMIKENIQTPECKKGFILDGFPRTVPQAEKLDKMLAEDNKKIDHVLDFAIDDSLLV 149

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RITGR +HP+SGRSYH +F PPKV   DD+TGEPLIQR DD  +VLK RLE+FHK T P
Sbjct: 150 KRITGRLVHPSSGRSYHREFFPPKVDMIDDITGEPLIQRSDDNEEVLKKRLESFHKNTTP 209

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           V+ YY  KG+L+ + A K    V+  ++ +  S
Sbjct: 210 VLGYYQNKGILSTIDASKSAPFVSHTIKSIFLS 242

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q1HQK0|KAD2_AEDAE Adenylate kinase 2, mitochondrial OS=Aedes aegypti GN=Adk2 PE=2 SV=1

 Score =  270 bits (689), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 123/211 (58%), Positives = 164/211 (77%)

Query: 35  VLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDL 94
           +L+GPPGSGKGTQ+P++K+++C+CHL+TGDMLR+ +AA + LG + K+ MD+G+LVSDDL
Sbjct: 23  ILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIAAGSKLGAQLKKVMDEGKLVSDDL 82

Query: 95  VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154
           VV +ID  + KP C+ GF+LDGFPRTVVQAEKLD++LEK+ T +D V+ F IDDS+L  R
Sbjct: 83  VVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDDLLEKRKTGLDAVVEFGIDDSLLVRR 142

Query: 155 ITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214
           ITGR IH ASGRSYH +FAPPKV   DDVTGEPL++R DD A  L  RLEA+HKQT+P+ 
Sbjct: 143 ITGRLIHQASGRSYHEEFAPPKVAMTDDVTGEPLMRRSDDNAAALVKRLEAYHKQTKPLA 202

Query: 215 DYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           DYYA +G+  ++ A +    V   +  + +S
Sbjct: 203 DYYALRGLHFRVDAAQSASRVFENIDSIFTS 233

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Aedes aegypti (taxid: 7159)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q74ZL1|KAD1_ASHGO Adenylate kinase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ADK1 PE=3 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 161/212 (75%), Gaps = 1/212 (0%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +K+++C+CHLATGDMLRS VA +T LG++AK+ MD+G LVSD
Sbjct: 64  RMVLIGPPGAGKGTQAPKLKEKFCVCHLATGDMLRSQVAKQTALGVQAKKIMDQGGLVSD 123

Query: 93  DLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           +++V +I D+    P C  GFILDGFPRT+ QA+KLDEML  QG  +D+ +   IDD +L
Sbjct: 124 EIMVNMIKDELRSNPECANGFILDGFPRTIPQAQKLDEMLVAQGKPLDRAVELKIDDELL 183

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RITGR +HPASGRSYH  F PPKV   DDVTG+PL+QR DD A  LK RL+A+H QTE
Sbjct: 184 VARITGRLVHPASGRSYHKLFNPPKVAMTDDVTGDPLVQRSDDNADALKKRLDAYHAQTE 243

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           P++D+Y K G+ A + A +PPK V  ++ K L
Sbjct: 244 PIVDFYKKTGIWAGVDASQPPKTVWSDILKAL 275

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth. Functions both in cytoplasm and mitochondrion intermembrane space.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q7QJX9|KAD2_ANOGA Adenylate kinase 2, mitochondrial OS=Anopheles gambiae GN=Adk2 PE=3 SV=2

 Score =  267 bits (682), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 162/210 (77%)

Query: 35  VLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDL 94
           +L+GPPGSGKGTQ+P++K++YC+CHL+TGDMLR+ +A+ + LG + K+ MD+G+LVSD+L
Sbjct: 22  ILLGPPGSGKGTQAPLLKEKYCVCHLSTGDMLRAEIASGSKLGAQLKKVMDEGKLVSDEL 81

Query: 95  VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154
           VV +ID  + KP C  GF+LDGFPRTVVQAEKLD +LEK+ T +D V+ F IDDS+L  R
Sbjct: 82  VVDMIDSNLDKPECRNGFLLDGFPRTVVQAEKLDNLLEKRNTGLDAVIEFGIDDSLLVRR 141

Query: 155 ITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214
           ITGR IH ASGRSYH +FAPPKV   DD TGEPL++R DD AQ L  RLE++H+QT+P+ 
Sbjct: 142 ITGRLIHQASGRSYHEEFAPPKVPMRDDETGEPLMRRSDDNAQALVKRLESYHRQTKPLA 201

Query: 215 DYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           DYYA +G+  ++ A K   +V   +  + +
Sbjct: 202 DYYALRGLHFRVDAAKSASDVFANIDSIFT 231

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Anopheles gambiae (taxid: 7165)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4KLY1|KAD2_DROMO Adenylate kinase 2, mitochondrial OS=Drosophila mojavensis GN=Adk2 PE=3 SV=1

 Score =  266 bits (681), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 119/209 (56%), Positives = 165/209 (78%)

Query: 35  VLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDL 94
           +L+GPPGSGKGTQ+P++K+++C+CHL+TGDMLR+ +A+ + LG + K+ MD+G+LVSDDL
Sbjct: 22  ILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIASGSKLGAELKKVMDEGKLVSDDL 81

Query: 95  VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154
           VV +ID  + KP C+ GF+LDGFPRTVVQA+KLD +L+K+ T +D V+ FAIDD++L  R
Sbjct: 82  VVDMIDSNLDKPECKNGFLLDGFPRTVVQAQKLDSLLDKRKTSLDAVIEFAIDDNLLVRR 141

Query: 155 ITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214
           ITGR IH ASGRSYH +FAPPKV   DD+TGEPL++R DD A+ LK RLEA+HKQT+P++
Sbjct: 142 ITGRLIHQASGRSYHEEFAPPKVPMKDDITGEPLMKRSDDNAEALKKRLEAYHKQTKPLV 201

Query: 215 DYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           DYY  +G+  ++ A K   +V   +  + 
Sbjct: 202 DYYGLRGLHFKVDAAKKASDVFSTIDSIF 230

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila mojavensis (taxid: 7230)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9U915|KAD2_DROME Adenylate kinase 2, mitochondrial OS=Drosophila melanogaster GN=Adk2 PE=1 SV=1

 Score =  266 bits (681), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 121/209 (57%), Positives = 163/209 (77%)

Query: 35  VLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDL 94
           +L+GPPGSGKGTQ+P++K+++C+CHL+TGDMLR+ +++ + LG + K+ MD G+LVSDDL
Sbjct: 22  ILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKLVSDDL 81

Query: 95  VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154
           VV +ID  + KP C+ GF+LDGFPRTVVQAEKLD +L+K+ T +D V+ FAIDDS+L  R
Sbjct: 82  VVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDSLLVRR 141

Query: 155 ITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214
           ITGR IH ASGRSYH +FAPPK    DDVTGEPLI+R DD A+ LK RLEA+HKQT+P++
Sbjct: 142 ITGRLIHQASGRSYHEEFAPPKKPMTDDVTGEPLIRRSDDNAEALKKRLEAYHKQTKPLV 201

Query: 215 DYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           DYY  +G+  ++ A K   +V   +  + 
Sbjct: 202 DYYGLRGLHFKVDAAKKSSDVFSTIDSIF 230

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
255547804	242	adenylate kinase 1, putative [Ricinus co	0.983	0.995	0.904	1e-125
297738377	301	unnamed protein product [Vitis vinifera]	0.991	0.807	0.884	1e-125
115485231	243	Os11g0312400 [Oryza sativa Japonica Grou	0.987	0.995	0.884	1e-125
225425838	245	PREDICTED: adenylate kinase B-like [Viti	0.991	0.991	0.884	1e-125
449469623	247	PREDICTED: adenylate kinase B-like [Cucu	0.991	0.983	0.880	1e-125
357477153	243	Adenylate kinase B [Medicago truncatula]	0.987	0.995	0.881	1e-125
224121954	246	predicted protein [Populus trichocarpa]	1.0	0.995	0.886	1e-124
356513991	242	PREDICTED: adenylate kinase B-like [Glyc	0.967	0.979	0.894	1e-124
225456268	245	PREDICTED: adenylate kinase B [Vitis vin	1.0	1.0	0.861	1e-124
255540299	241	adenylate kinase 1, putative [Ricinus co	0.971	0.987	0.899	1e-123

>gi|255547804|ref|XP_002514959.1| adenylate kinase 1, putative [Ricinus communis] gi|223546010|gb|EEF47513.1| adenylate kinase 1, putative [Ricinus communis]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/241 (90%), Positives = 233/241 (96%)

Query: 5   AVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64
           A +LEDVPSVD+MTELLRRF+CSSK DKRLV IGPPGSGKGTQSP+IKD+YCLCHLATGD
Sbjct: 2   ATSLEDVPSVDIMTELLRRFQCSSKTDKRLVFIGPPGSGKGTQSPIIKDDYCLCHLATGD 61

Query: 65  MLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQA 124
           MLR+AVAAKTPLGIKAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGF+LDGFPRTVVQA
Sbjct: 62  MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFVLDGFPRTVVQA 121

Query: 125 EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT 184
           ++LDEMLEKQGTK+DKVL+FAIDDSILEERITGRWIHP+SGR+YHTKFAPPKV G DDVT
Sbjct: 122 QRLDEMLEKQGTKVDKVLDFAIDDSILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 181

Query: 185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           GEPLIQRKDDT  VLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVT EVQKVLS
Sbjct: 182 GEPLIQRKDDTPAVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTAEVQKVLS 241

Query: 245 S 245
           S
Sbjct: 242 S 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738377|emb|CBI27578.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/243 (88%), Positives = 231/243 (95%)

Query: 2   ASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61
           +SS V LE++PSVD+MTELLRR KCSSKPDKRL+L+GPPGSGKGTQSP+IKDEYCLCHLA
Sbjct: 59  SSSGVVLEEIPSVDLMTELLRRMKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 118

Query: 62  TGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTV 121
           TGDMLR AVAAKTPLGIKAKEAMDKGELV+DDLVVGIID+AMKKPSC+KGFILDGFPRTV
Sbjct: 119 TGDMLRVAVAAKTPLGIKAKEAMDKGELVTDDLVVGIIDEAMKKPSCQKGFILDGFPRTV 178

Query: 122 VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD 181
           VQAEKLDEML KQG KIDKVLNFAIDD+ILEERITGRWIHP+SGR+YHTKFAPPKV G D
Sbjct: 179 VQAEKLDEMLAKQGNKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVSGVD 238

Query: 182 DVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQK 241
           DVTGEPLIQRKDDT +VLKSRLEAFH+QTEPVIDYYAKK VLAQLHAEKPPKEV+ EVQK
Sbjct: 239 DVTGEPLIQRKDDTPEVLKSRLEAFHRQTEPVIDYYAKKNVLAQLHAEKPPKEVSAEVQK 298

Query: 242 VLS 244
            LS
Sbjct: 299 ALS 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485231|ref|NP_001067759.1| Os11g0312400 [Oryza sativa Japonica Group] gi|585338|sp|Q08480.1|KAD2_ORYSJ RecName: Full=Adenylate kinase B; Short=AK B; AltName: Full=ATP-AMP transphosphorylase B gi|391879|dbj|BAA01181.1| adenylate kinase-b [Oryza sativa] gi|62734015|gb|AAX96124.1| adenylate kinase b (ec 2.7.4.3) (atp-amp transphosphorylase) [Oryza sativa Japonica Group] gi|77550163|gb|ABA92960.1| Adenylate kinase B, putative, expressed [Oryza sativa Japonica Group] gi|113644981|dbj|BAF28122.1| Os11g0312400 [Oryza sativa Japonica Group] gi|125534192|gb|EAY80740.1| hypothetical protein OsI_35920 [Oryza sativa Indica Group] gi|125576978|gb|EAZ18200.1| hypothetical protein OsJ_33744 [Oryza sativa Japonica Group] gi|215707086|dbj|BAG93546.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/242 (88%), Positives = 233/242 (96%)

Query: 3   SSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62
           ++A  LEDVPS+D+M ELLRR KCSSKPDKRL+L+GPPGSGKGTQSP+IKDEYCLCHLAT
Sbjct: 2   AAAANLEDVPSMDLMNELLRRMKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 61

Query: 63  GDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVV 122
           GDMLR+AVAAKTPLG+KAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGFILDGFPRTVV
Sbjct: 62  GDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVV 121

Query: 123 QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDD 182
           QA+KLDEMLEK+GTK+DKVLNFAIDDSILEERITGRWIHP+SGRSYHTKFAPPKV G DD
Sbjct: 122 QAQKLDEMLEKKGTKVDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKVPGVDD 181

Query: 183 VTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKV 242
           VTGEPLIQRKDDTA+VLKSRLEAFHKQTEPVIDYY+KK ++A LHAEKPPKEVT EVQKV
Sbjct: 182 VTGEPLIQRKDDTAEVLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTAEVQKV 241

Query: 243 LS 244
           LS
Sbjct: 242 LS 243

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425838|ref|XP_002266762.1| PREDICTED: adenylate kinase B-like [Vitis vinifera]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/243 (88%), Positives = 231/243 (95%)

Query: 2   ASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61
           +SS V LE++PSVD+MTELLRR KCSSKPDKRL+L+GPPGSGKGTQSP+IKDEYCLCHLA
Sbjct: 3   SSSGVVLEEIPSVDLMTELLRRMKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62

Query: 62  TGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTV 121
           TGDMLR AVAAKTPLGIKAKEAMDKGELV+DDLVVGIID+AMKKPSC+KGFILDGFPRTV
Sbjct: 63  TGDMLRVAVAAKTPLGIKAKEAMDKGELVTDDLVVGIIDEAMKKPSCQKGFILDGFPRTV 122

Query: 122 VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD 181
           VQAEKLDEML KQG KIDKVLNFAIDD+ILEERITGRWIHP+SGR+YHTKFAPPKV G D
Sbjct: 123 VQAEKLDEMLAKQGNKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVSGVD 182

Query: 182 DVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQK 241
           DVTGEPLIQRKDDT +VLKSRLEAFH+QTEPVIDYYAKK VLAQLHAEKPPKEV+ EVQK
Sbjct: 183 DVTGEPLIQRKDDTPEVLKSRLEAFHRQTEPVIDYYAKKNVLAQLHAEKPPKEVSAEVQK 242

Query: 242 VLS 244
            LS
Sbjct: 243 ALS 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469623|ref|XP_004152518.1| PREDICTED: adenylate kinase B-like [Cucumis sativus] gi|449521377|ref|XP_004167706.1| PREDICTED: adenylate kinase B-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/243 (88%), Positives = 233/243 (95%)

Query: 3   SSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62
           S+A+ALEDVPSVD+MTELLRR KCSSKPDKRL+LIGPPGSGKGTQSP+IKD+YCLCHLAT
Sbjct: 5   SAALALEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDDYCLCHLAT 64

Query: 63  GDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVV 122
           GDMLR+AVAAKTPLG+KAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGFILDGFPRTVV
Sbjct: 65  GDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVV 124

Query: 123 QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDD 182
           QA+KLDE+LEKQG ++DKVLNFAIDD+ILEERITGRWIHP+SGRSYHTKFAPPK  G DD
Sbjct: 125 QAQKLDEVLEKQGVRVDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGVDD 184

Query: 183 VTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKV 242
           VTGEPLIQRKDDT  VLKSRLEAFH+QTEPVIDYYAKKG++A LHAEK PKEVT EVQKV
Sbjct: 185 VTGEPLIQRKDDTVAVLKSRLEAFHRQTEPVIDYYAKKGIVANLHAEKAPKEVTSEVQKV 244

Query: 243 LSS 245
           LSS
Sbjct: 245 LSS 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477153|ref|XP_003608862.1| Adenylate kinase B [Medicago truncatula] gi|217075582|gb|ACJ86151.1| unknown [Medicago truncatula] gi|355509917|gb|AES91059.1| Adenylate kinase B [Medicago truncatula] gi|388515225|gb|AFK45674.1| unknown [Medicago truncatula]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/244 (88%), Positives = 235/244 (96%), Gaps = 2/244 (0%)

Query: 1   MASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60
           MASS   LEDVPSVD+M+ELLRRFKCSSKPDKRL+L+GPPGSGKGTQSP+IKDEYCLCHL
Sbjct: 1   MASSN--LEDVPSVDLMSELLRRFKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 58

Query: 61  ATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRT 120
           ATGDMLR+AVAAKTPLGIKAKEAM+KGELVSDDLVVGIID+AMKKPSC+KGFILDGFPRT
Sbjct: 59  ATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRT 118

Query: 121 VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGF 180
           VVQA+KLDEML+KQG KIDKVLNFAIDD+ILEERITGRWIHP+SGR+YHTKFAPPKV G 
Sbjct: 119 VVQAQKLDEMLQKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVSGV 178

Query: 181 DDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQ 240
           DDVTGEPLIQRKDDTA VLKSRLE+FH+QTEPVIDYY+KKG++A LHAEKPPKEVT EV+
Sbjct: 179 DDVTGEPLIQRKDDTAAVLKSRLESFHRQTEPVIDYYSKKGIVASLHAEKPPKEVTSEVE 238

Query: 241 KVLS 244
           KVLS
Sbjct: 239 KVLS 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121954|ref|XP_002318714.1| predicted protein [Populus trichocarpa] gi|222859387|gb|EEE96934.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/246 (88%), Positives = 233/246 (94%), Gaps = 1/246 (0%)

Query: 1   MASSAVA-LEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH 59
           MASSA A LEDVPSV++MTELLRR KCSSKPDKRL+LIGPPGSGKGTQSP+IKDEYCLCH
Sbjct: 1   MASSAAANLEDVPSVNLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCH 60

Query: 60  LATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPR 119
           LATGDMLR+AVAAKTPLGIKAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGFILDGFPR
Sbjct: 61  LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPR 120

Query: 120 TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHG 179
           TVVQAEKLDEML+KQG KIDKVLNFAIDD+ILEERITGRWIHP+SGR+YHTKFAPPKV G
Sbjct: 121 TVVQAEKLDEMLQKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPG 180

Query: 180 FDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV 239
            DDVTGEPLIQRKDDTA VLKSRLEAFH+QTEPVI YY  KG +A+LHAEK PK+VT EV
Sbjct: 181 VDDVTGEPLIQRKDDTAAVLKSRLEAFHRQTEPVIGYYKNKGAVAELHAEKSPKDVTAEV 240

Query: 240 QKVLSS 245
           QKVLSS
Sbjct: 241 QKVLSS 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513991|ref|XP_003525691.1| PREDICTED: adenylate kinase B-like [Glycine max] gi|356513993|ref|XP_003525692.1| PREDICTED: adenylate kinase B-like [Glycine max] gi|255637862|gb|ACU19250.1| unknown [Glycine max]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/237 (89%), Positives = 231/237 (97%)

Query: 8   LEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLR 67
           LEDVPS+D+MTELLRR KCSSKPDKRL+LIGPPGSGKGTQSP+IKDEYCLCHLATGDMLR
Sbjct: 6   LEDVPSLDLMTELLRRLKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLR 65

Query: 68  SAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKL 127
           +AVAAKTPLG+KAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGFILDGFPRTVVQA+KL
Sbjct: 66  AAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKL 125

Query: 128 DEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187
           DEML+KQG K+DKVLNFAIDD+ILEERITGRWIHP+SGR+YHTKF+PPKV G DDVTGEP
Sbjct: 126 DEMLQKQGVKVDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFSPPKVLGVDDVTGEP 185

Query: 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           LIQRKDDTA VLKSRLEAFHKQTEPVIDYY+KKG++A LHAEKPPKEVTVEV+KVLS
Sbjct: 186 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGLVANLHAEKPPKEVTVEVEKVLS 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456268|ref|XP_002283508.1| PREDICTED: adenylate kinase B [Vitis vinifera] gi|297734386|emb|CBI15633.3| unnamed protein product [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/245 (86%), Positives = 231/245 (94%)

Query: 1   MASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60
           MA+ +  LED+PSVD+MTELLRR KCS+KPDKRL+LIGPPGSGKGTQSP+IKDEYCLCHL
Sbjct: 1   MATLSANLEDIPSVDLMTELLRRMKCSTKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60

Query: 61  ATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRT 120
           ATGDMLR+AVAAKTPLGIKAKEAM+KGELVSDDLVVGIID+A+KKPSC+KGFILDGFPRT
Sbjct: 61  ATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVGIIDEAIKKPSCQKGFILDGFPRT 120

Query: 121 VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGF 180
            VQA+KLDEMLEKQG K+DKVLNFAIDD ILEERITGRW+HP+SGR+YHTKFAPPKVHG 
Sbjct: 121 EVQAQKLDEMLEKQGVKVDKVLNFAIDDGILEERITGRWMHPSSGRTYHTKFAPPKVHGI 180

Query: 181 DDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQ 240
           DDVTGEPLIQRKDDTA VLKSRLEAFH+QTEPVIDYY KKG++A LHAEK PKEVT EVQ
Sbjct: 181 DDVTGEPLIQRKDDTAAVLKSRLEAFHRQTEPVIDYYTKKGIVANLHAEKSPKEVTTEVQ 240

Query: 241 KVLSS 245
           K LSS
Sbjct: 241 KALSS 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540299|ref|XP_002511214.1| adenylate kinase 1, putative [Ricinus communis] gi|223550329|gb|EEF51816.1| adenylate kinase 1, putative [Ricinus communis]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/238 (89%), Positives = 229/238 (96%)

Query: 8   LEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLR 67
           LEDVPSVD+MTELLRR KCSSKPDKRL+LIGPPGSGKGTQSP+IKDEYCLCHLATGDMLR
Sbjct: 4   LEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLR 63

Query: 68  SAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKL 127
           +AVAAKTPLG+KAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGFILDGFPRTVVQA+KL
Sbjct: 64  AAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKL 123

Query: 128 DEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187
           DEMLEKQG KIDKVLNFAIDD+ILEERITGRWIHP+SGR+YHTKFAPPKV G DDV+GEP
Sbjct: 124 DEMLEKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVAGVDDVSGEP 183

Query: 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           LIQRKDDTA VLKSRLEAFHKQTEPVIDYY +KGV+A+L AEKPPK VT EVQKVLSS
Sbjct: 184 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYKQKGVVAELPAEKPPKVVTAEVQKVLSS 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
UNIPROTKB|Q08480	243	ADK-B "Adenylate kinase B" [Or	0.987	0.995	0.884	9.1e-116
UNIPROTKB|Q08479	241	ADK-A "Adenylate kinase A" [Or	0.979	0.995	0.870	5.9e-112
TAIR|locus:2167316	246	ADK1 "adenylate kinase 1" [Ara	0.983	0.979	0.804	4.6e-105
TAIR|locus:2177527	248	AT5G50370 [Arabidopsis thalian	0.995	0.983	0.782	1.1e-103
DICTYBASE|DDB_G0283805	276	adkA "adenylate kinase" [Dicty	0.869	0.771	0.586	1.7e-66
FB|FBgn0022708	240	Adk2 "Adenylate kinase-2" [Dro	0.848	0.866	0.581	7.4e-66
CGD|CAL0004216	249	ADK1 [Candida albicans (taxid:	0.971	0.955	0.516	4.2e-63
SGD|S000002634	222	ADK1 "Adenylate kinase, requir	0.869	0.959	0.560	1.4e-62
MGI|MGI:87978	239	Ak2 "adenylate kinase 2" [Mus	0.865	0.887	0.542	2.1e-61
RGD|2077	239	Ak2 "adenylate kinase 2" [Ratt	0.865	0.887	0.537	2.7e-61

UNIPROTKB|Q08480 ADK-B "Adenylate kinase B" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 214/242 (88%), Positives = 233/242 (96%)

Query:     3 SSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT 62
             ++A  LEDVPS+D+M ELLRR KCSSKPDKRL+L+GPPGSGKGTQSP+IKDEYCLCHLAT
Sbjct:     2 AAAANLEDVPSMDLMNELLRRMKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 61

Query:    63 GDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVV 122
             GDMLR+AVAAKTPLG+KAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGFILDGFPRTVV
Sbjct:    62 GDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVV 121

Query:   123 QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDD 182
             QA+KLDEMLEK+GTK+DKVLNFAIDDSILEERITGRWIHP+SGRSYHTKFAPPKV G DD
Sbjct:   122 QAQKLDEMLEKKGTKVDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKVPGVDD 181

Query:   183 VTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKV 242
             VTGEPLIQRKDDTA+VLKSRLEAFHKQTEPVIDYY+KK ++A LHAEKPPKEVT EVQKV
Sbjct:   182 VTGEPLIQRKDDTAEVLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTAEVQKV 241

Query:   243 LS 244
             LS
Sbjct:   242 LS 243

GO:0004017 "adenylate kinase activity" evidence=IGI;ISS

GO:0005524 "ATP binding" evidence=IGI

GO:0006163 "purine nucleotide metabolic process" evidence=IEP

UNIPROTKB|Q08479 ADK-A "Adenylate kinase A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 209/240 (87%), Positives = 226/240 (94%)

Query:     5 AVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD 64
             A  LEDVPS+++MTELLRR KCSSKPDKR++L+GPPG GKGTQSP+IKDE+CLCHLATGD
Sbjct:     2 AANLEDVPSMELMTELLRRMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATGD 61

Query:    65 MLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQA 124
             MLR+AVAAKTPLGIKAKEAMDKGELVSDDLVVGIID+AMKK SC+KGFILDGFPRTVVQA
Sbjct:    62 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQA 121

Query:   125 EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT 184
             +KLDEML KQGTKIDKVLNFAIDD+ILEERITGRWIHP+SGRSYHTKFAPPK  G DDVT
Sbjct:   122 QKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVT 181

Query:   185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
             GEPLIQRKDDTA VLKSRLEAFH QT+PVIDYY KKG++A LHAEKPPKEVTVEVQK LS
Sbjct:   182 GEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241

GO:0004017 "adenylate kinase activity" evidence=IGI;ISS

GO:0005524 "ATP binding" evidence=IGI

GO:0006163 "purine nucleotide metabolic process" evidence=IEP

TAIR|locus:2167316 ADK1 "adenylate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
 Identities = 194/241 (80%), Positives = 218/241 (90%)

Query:     4 SAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG 63
             +A  LEDV +VD+M+ELLRR KCS KPDKRL+ IGPPGSGKGTQSPV+KDEYCLCHL+TG
Sbjct:     6 AAADLEDVQTVDLMSELLRRLKCSQKPDKRLIFIGPPGSGKGTQSPVVKDEYCLCHLSTG 65

Query:    64 DMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQ 123
             DMLR+AVA+KTPLG+KAKEAM+KGELVSDDLVVGIID+AM KP C+KGFILDGFPRTV Q
Sbjct:    66 DMLRAAVASKTPLGVKAKEAMEKGELVSDDLVVGIIDEAMNKPKCQKGFILDGFPRTVTQ 125

Query:   124 AEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDV 183
             AEKLDEML+++GT+IDKVLNFAIDD+ILEERITGRWIHP+SGRSYHTKFAPPK  G DD+
Sbjct:   126 AEKLDEMLKRRGTEIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGVDDI 185

Query:   184 TGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
             TGEPLIQRKDD A VLKSRL AFH QT+PVIDYYAKK VL  + AEK P+EVT EV+K L
Sbjct:   186 TGEPLIQRKDDNADVLKSRLAAFHSQTQPVIDYYAKKAVLTNIQAEKAPQEVTSEVKKAL 245

Query:   244 S 244
             S
Sbjct:   246 S 246

GO:0004017 "adenylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2177527 AT5G50370 [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 191/244 (78%), Positives = 223/244 (91%)

Query:     2 ASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA 61
             ++++V +ED+ +VD+M+ELLRR KC+SKPDKRLV IGPPGSGKGTQSPVIKDE+CLCHL+
Sbjct:     5 SAASVDMEDIQTVDLMSELLRRMKCASKPDKRLVFIGPPGSGKGTQSPVIKDEFCLCHLS 64

Query:    62 TGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTV 121
             TGDMLR+AVAAKTPLG+KAKEAMDKGELVSDDLVVGI+D+AM +P C+KGFILDGFPRTV
Sbjct:    65 TGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIMDEAMNRPKCQKGFILDGFPRTV 124

Query:   122 VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD 181
              QAEKLDEML ++G +IDKVLNFAIDDS+LEERITGRWIHP+SGRSYHTKFAPPKV G D
Sbjct:   125 TQAEKLDEMLNRRGAQIDKVLNFAIDDSVLEERITGRWIHPSSGRSYHTKFAPPKVPGVD 184

Query:   182 DVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQK 241
             D+TGEPLIQRKDD A VL+SRL+AFHKQT+PVIDYYAKK  L  + AEK P+EVT  V+K
Sbjct:   185 DLTGEPLIQRKDDNADVLRSRLDAFHKQTQPVIDYYAKKENLVNIPAEKAPEEVTKVVKK 244

Query:   242 VLSS 245
             V+S+
Sbjct:   245 VVST 248

GO:0004017 "adenylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

DICTYBASE|DDB_G0283805 adkA "adenylate kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 125/213 (58%), Positives = 163/213 (76%)

Query:    33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
             R+V IGPPGSGKGTQ+P++K++YCLCHL+TGDMLR+A+   T  G +AK  MD+G LV D
Sbjct:    30 RVVFIGPPGSGKGTQAPLVKEDYCLCHLSTGDMLRAAIEQGTETGKQAKTIMDQGGLVPD 89

Query:    93 DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
             +++V +I + ++ P C+KGFILDGFPRTV QAEKLD+ML +   KID VL+FAIDDS+L 
Sbjct:    90 EVMVNMIKENIQTPECKKGFILDGFPRTVPQAEKLDKMLAEDNKKIDHVLDFAIDDSLLV 149

Query:   153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
             +RITGR +HP+SGRSYH +F PPKV   DD+TGEPLIQR DD  +VLK RLE+FHK T P
Sbjct:   150 KRITGRLVHPSSGRSYHREFFPPKVDMIDDITGEPLIQRSDDNEEVLKKRLESFHKNTTP 209

Query:   213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
             V+ YY  KG+L+ + A K    V+  ++ +  S
Sbjct:   210 VLGYYQNKGILSTIDASKSAPFVSHTIKSIFLS 242

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA;ISS

GO:0006166 "purine ribonucleoside salvage" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0022708 Adk2 "Adenylate kinase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 121/208 (58%), Positives = 163/208 (78%)

Query:    35 VLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDL 94
             +L+GPPGSGKGTQ+P++K+++C+CHL+TGDMLR+ +++ + LG + K+ MD G+LVSDDL
Sbjct:    22 ILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKLVSDDL 81

Query:    95 VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154
             VV +ID  + KP C+ GF+LDGFPRTVVQAEKLD +L+K+ T +D V+ FAIDDS+L  R
Sbjct:    82 VVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDSLLVRR 141

Query:   155 ITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214
             ITGR IH ASGRSYH +FAPPK    DDVTGEPLI+R DD A+ LK RLEA+HKQT+P++
Sbjct:   142 ITGRLIHQASGRSYHEEFAPPKKPMTDDVTGEPLIRRSDDNAEALKKRLEAYHKQTKPLV 201

Query:   215 DYYAKKGVLAQLHAEKPPKEVTVEVQKV 242
             DYY  +G+  ++ A K   +V   +  +
Sbjct:   202 DYYGLRGLHFKVDAAKKSSDVFSTIDSI 229

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0004017 "adenylate kinase activity" evidence=ISS;IMP;IDA

GO:0006172 "ADP biosynthetic process" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

CGD|CAL0004216 ADK1 [Candida albicans (taxid:5476)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 127/246 (51%), Positives = 171/246 (69%)

Query:     6 VALEDVPS-VDMMTELLRRF--KCSSKPDK----RLVLIGPPGSGKGTQSPVIKDEYCLC 58
             +++ED+ + V  + E ++    K    PD     R+VLIGPPG+GKGTQ+P +K+++C C
Sbjct:     1 MSIEDLKNTVTKLQERIQELEKKAGIIPDVPKSVRMVLIGPPGAGKGTQAPNLKEKFCAC 60

Query:    59 HLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK-PSCEKGFILDGF 117
             HLATGDMLR+ VAAKT LG++AK+ MD+G LVSD+++V +I   ++    C KGFILDGF
Sbjct:    61 HLATGDMLRAQVAAKTALGVEAKKIMDQGGLVSDEIMVNMIKSELENNQECSKGFILDGF 120

Query:   118 PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKV 177
             PRT+ QAEKLD MLE + T ++K +   IDD +L  RITGR +HPASGRSYH  F PPK 
Sbjct:   121 PRTIPQAEKLDSMLESRKTPLEKAVELKIDDELLVARITGRLVHPASGRSYHKLFNPPKK 180

Query:   178 HGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTV 237
                DDVTGEPL+QR DD    LK RL  +HKQTEP++ YY K G+ + + A + P +V  
Sbjct:   181 DMTDDVTGEPLVQRSDDNEDALKKRLVTYHKQTEPIVAYYQKTGIWSGVDASQKPTKVWS 240

Query:   238 EVQKVL 243
             ++ K L
Sbjct:   241 DILKCL 246

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

SGD|S000002634 ADK1 "Adenylate kinase, required for purine metabolism" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 120/214 (56%), Positives = 157/214 (73%)

Query:    27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK 86
             SS    R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+
Sbjct:     2 SSSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQ 61

Query:    87 GELVSDDLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFA 145
             G LVSDD++V +I D+    P+C+ GFILDGFPRT+ QAEKLD+ML++QGT ++K +   
Sbjct:    62 GGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELK 121

Query:   146 IDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEA 205
             +DD +L  RITGR IHPASGRSYH  F PPK    DDVTGE L+QR DD A  LK RL A
Sbjct:   122 VDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAA 181

Query:   206 FHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV 239
             +H QTEP++D+Y K G+ A + A +PP  V  ++
Sbjct:   182 YHAQTEPIVDFYKKTGIWAGVDASQPPATVWADI 215

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA;IDA;IMP

GO:0005758 "mitochondrial intermembrane space" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006270 "DNA replication initiation" evidence=IMP

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0009117 "nucleotide metabolic process" evidence=IMP

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:87978 Ak2 "adenylate kinase 2" [Mus musculus (taxid:10090)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 115/212 (54%), Positives = 157/212 (74%)

Query:    33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
             R VL+GPPG+GKGTQ+P + + +C+CHLATGDMLR+ VA+ + LG K K  MD G+LVSD
Sbjct:    17 RAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 76

Query:    93 DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
             ++VV +I++ ++ PSC+ GF+LDGFPRTV QAE LD+++EK+  K+D V+ F+I DS+L 
Sbjct:    77 EMVVELIEKNLETPSCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIQDSLLI 136

Query:   153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
              RITGR IHP SGRSYH +F PPK    DD+TGEPLI+R DD  + LK+RLEA+H QT P
Sbjct:   137 RRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKTRLEAYHTQTTP 196

Query:   213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
             +++YY K+G+   + A + P  V   +    S
Sbjct:   197 LVEYYRKRGIHCAIDASQTPDIVFASILAAFS 228

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=ISO

GO:0036126 "sperm flagellum" evidence=IDA

GO:0046033 "AMP metabolic process" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046060 "dATP metabolic process" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISO

GO:0097226 "sperm mitochondrial sheath" evidence=IDA

RGD|2077 Ak2 "adenylate kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 114/212 (53%), Positives = 157/212 (74%)

Query:    33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
             R VL+GPPG+GKGTQ+P + + +C+CHLATGDMLR+ VA+ + LG K K  MD G+LVSD
Sbjct:    17 RAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 76

Query:    93 DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
             ++VV +I++ ++ PSC+ GF+LDGFPRTV QAE LD++++K+  K+D V+ F+I DS+L 
Sbjct:    77 EMVVELIEKNLETPSCKNGFLLDGFPRTVKQAEMLDDLMDKRKEKLDSVIEFSIQDSLLI 136

Query:   153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
              RITGR IHP SGRSYH +F PPK    DD+TGEPLI+R DD  + LK+RLEA+H QT P
Sbjct:   137 RRITGRLIHPKSGRSYHEEFNPPKEAMKDDITGEPLIRRSDDNEKALKTRLEAYHTQTTP 196

Query:   213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
             +++YY K+G+   + A + P  V   +    S
Sbjct:   197 LVEYYRKRGIHCAIDASQTPDVVFASILAAFS 228

GO:0001889 "liver development" evidence=IEP

GO:0004017 "adenylate kinase activity" evidence=IDA;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006119 "oxidative phosphorylation" evidence=IEP

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0036126 "sperm flagellum" evidence=ISO

GO:0046033 "AMP metabolic process" evidence=IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046060 "dATP metabolic process" evidence=IDA

GO:0046083 "adenine metabolic process" evidence=TAS

GO:0097066 "response to thyroid hormone stimulus" evidence=IEP

GO:0097226 "sperm mitochondrial sheath" evidence=IEA;ISO

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4LP08	KAD2_DROVI	2, ., 7, ., 4, ., 3	0.5598	0.8530	0.8708	N/A	no
Q28F55	KAD2_XENTR	2, ., 7, ., 4, ., 3	0.5330	0.8653	0.8796	yes	no
B2B0E2	KAD1_PODAN	2, ., 7, ., 4, ., 3	0.5735	0.8285	0.7355	yes	no
Q9WTP6	KAD2_MOUSE	2, ., 7, ., 4, ., 3	0.5424	0.8653	0.8870	yes	no
P29410	KAD2_RAT	2, ., 7, ., 4, ., 3	0.5377	0.8653	0.8870	yes	no
B4MQT3	KAD2_DROWI	2, ., 7, ., 4, ., 3	0.5454	0.8530	0.8708	N/A	no
P07170	KAD1_YEAST	2, ., 7, ., 4, ., 3	0.5607	0.8693	0.9594	yes	no
Q1HQK0	KAD2_AEDAE	2, ., 7, ., 4, ., 3	0.5829	0.8612	0.8755	N/A	no
Q7QJX9	KAD2_ANOGA	2, ., 7, ., 4, ., 3	0.5714	0.8571	0.875	yes	no
Q5A4Q1	KAD12_CANAL	2, ., 7, ., 4, ., 3	0.5707	0.8612	0.8473	N/A	no
Q6CK57	KAD1_KLULA	2, ., 7, ., 4, ., 3	0.5754	0.8612	0.9295	yes	no
Q9U915	KAD2_DROME	2, ., 7, ., 4, ., 3	0.5789	0.8530	0.8708	yes	no
B3MCQ5	KAD2_DROAN	2, ., 7, ., 4, ., 3	0.5693	0.8530	0.8708	N/A	no
B4I2A8	KAD2_DROSE	2, ., 7, ., 4, ., 3	0.5741	0.8530	0.8708	N/A	no
Q9FK35	KAD2_ARATH	2, ., 7, ., 4, ., 3	0.7939	0.9510	0.9395	no	no
Q6CG57	KAD1_YARLI	2, ., 7, ., 4, ., 3	0.5613	0.8612	0.8406	yes	no
Q6FM32	KAD1_CANGA	2, ., 7, ., 4, ., 3	0.5550	0.8857	0.9774	yes	no
A3LV51	KAD1_PICST	2, ., 7, ., 4, ., 3	0.5518	0.8612	0.8473	yes	no
B4KLY1	KAD2_DROMO	2, ., 7, ., 4, ., 3	0.5693	0.8530	0.8708	N/A	no
B4PAR6	KAD2_DROYA	2, ., 7, ., 4, ., 3	0.5687	0.8612	0.8791	N/A	no
Q4WJ21	KAD1_ASPFU	2, ., 7, ., 4, ., 3	0.5462	0.9020	0.8599	yes	no
Q08479	KAD1_ORYSJ	2, ., 7, ., 4, ., 3	0.8708	0.9795	0.9958	no	no
A1D3M8	KAD1_NEOFI	2, ., 7, ., 4, ., 3	0.5418	0.9020	0.8599	N/A	no
A8PAA1	KAD1_COPC7	2, ., 7, ., 4, ., 3	0.5700	0.8693	0.8320	N/A	no
Q1L8L9	KAD2_DANRE	2, ., 7, ., 4, ., 3	0.5258	0.8693	0.8838	yes	no
P0CO42	KAD1_CRYNJ	2, ., 7, ., 4, ., 3	0.5560	0.8693	0.7918	yes	no
B4J672	KAD2_DROGR	2, ., 7, ., 4, ., 3	0.5645	0.8530	0.8781	N/A	no
A7THY5	KAD1_VANPO	2, ., 7, ., 4, ., 3	0.5539	0.8653	0.9506	N/A	no
B0X5E3	KAD2_CULQU	2, ., 7, ., 4, ., 3	0.5645	0.8530	0.8672	N/A	no
B3NQ53	KAD2_DROER	2, ., 7, ., 4, ., 3	0.5693	0.8530	0.8708	N/A	no
Q08480	KAD2_ORYSJ	2, ., 7, ., 4, ., 3	0.8842	0.9877	0.9958	yes	no
Q6BLN9	KAD1_DEBHA	2, ., 7, ., 4, ., 3	0.5471	0.8612	0.8473	yes	no
B3LG61	KAD1_YEAS1	2, ., 7, ., 4, ., 3	0.5607	0.8693	0.9594	N/A	no
B4QBH8	KAD2_DROSI	2, ., 7, ., 4, ., 3	0.5741	0.8530	0.8708	N/A	no
Q59W41	KAD11_CANAL	2, ., 7, ., 4, ., 3	0.5660	0.8612	0.8473	N/A	no
Q54QJ9	KAD2_DICDI	2, ., 7, ., 4, ., 3	0.5868	0.8693	0.7717	yes	no
A6ZYI0	KAD1_YEAS7	2, ., 7, ., 4, ., 3	0.5607	0.8693	0.9594	N/A	no
A5DC72	KAD1_PICGU	2, ., 7, ., 4, ., 3	0.5471	0.8612	0.8542	N/A	no
O82514	KAD1_ARATH	2, ., 7, ., 4, ., 3	0.7983	0.9918	0.9878	yes	no
B0D360	KAD1_LACBS	2, ., 7, ., 4, ., 3	0.5841	0.8693	0.8320	N/A	no
Q2UBH0	KAD1_ASPOR	2, ., 7, ., 4, ., 3	0.5515	0.8857	0.8410	yes	no
Q290A8	KAD2_DROPS	2, ., 7, ., 4, ., 3	0.5598	0.8530	0.8708	yes	no
B0XPW9	KAD1_ASPFC	2, ., 7, ., 4, ., 3	0.5462	0.9020	0.8599	N/A	no
Q74ZL1	KAD1_ASHGO	2, ., 7, ., 4, ., 3	0.5849	0.8612	0.7617	yes	no
A1CQR5	KAD1_ASPCL	2, ., 7, ., 4, ., 3	0.5619	0.8530	0.8132	N/A	no
A5E598	KAD1_LODEL	2, ., 7, ., 4, ., 3	0.5450	0.8857	0.8611	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.998
3rd Layer	2.7.4.3	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
PLN02674	244	PLN02674, PLN02674, adenylate kinase	1e-175
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	1e-108
pfam00406	186	pfam00406, ADK, Adenylate kinase	1e-105
TIGR01351	210	TIGR01351, adk, adenylate kinase	1e-104
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	3e-94
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	6e-60
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	2e-59
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	3e-52
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	2e-51
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	7e-51
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	2e-50
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	5e-50
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	2e-49
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	2e-45
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	4e-41
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	8e-37
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	1e-35
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	2e-33
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	3e-33
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	1e-31
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	3e-19
pfam05191	36	pfam05191, ADK_lid, Adenylate kinase, active site	1e-16
pfam13207	114	pfam13207, AAA_17, AAA domain	1e-04

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score =  481 bits (1240), Expect = e-175
 Identities = 218/244 (89%), Positives = 232/244 (95%)

Query: 1   MASSAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL 60
            +++A  LEDVPSVD+MTELLRR KCSSKPDKRL+LIGPPGSGKGTQSP+IKDEYCLCHL
Sbjct: 1   SSAAAANLEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60

Query: 61  ATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRT 120
           ATGDMLR+AVAAKTPLGIKAKEAMDKGELVSDDLVVGIID+AMKKPSC+KGFILDGFPRT
Sbjct: 61  ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRT 120

Query: 121 VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGF 180
           VVQA+KLDEML KQG KIDKVLNFAIDD+ILEERITGRWIHP+SGR+YHTKFAPPKV G 
Sbjct: 121 VVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGV 180

Query: 181 DDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQ 240
           DDVTGEPLIQRKDDTA VLKSRLEAFHKQTEPVIDYYAKKGV+A LHAEKPPKEVT EVQ
Sbjct: 181 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQ 240

Query: 241 KVLS 244
           K LS
Sbjct: 241 KALS 244

Length = 244

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  310 bits (798), Expect = e-108
 Identities = 111/214 (51%), Positives = 150/214 (70%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
            RL+L+GPPG+GKGTQ+  I ++Y + H++TGDMLR+AV A T LG +AK  MD GELV 
Sbjct: 1   MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVP 60

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V+G++ + + +P C+ GF+LDGFPRT+ QAE LDEML++ G K+D V+   + D  L
Sbjct: 61  DEIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEEL 120

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
            ER++GR I PA GR+YH KF PPKV G  DV GE LIQR DD  + ++ RLE +HKQT 
Sbjct: 121 VERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTA 180

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           P+IDYY KKG L ++       EV  ++ K L  
Sbjct: 181 PLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214

Length = 215

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  301 bits (774), Expect = e-105
 Identities = 112/187 (59%), Positives = 143/187 (76%), Gaps = 1/187 (0%)

Query: 36  LIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLV 95
           L+GPPG+GKGTQ+  I  +Y + HL+TGD+LR+ V + T LG +AKE MDKGELV D++V
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 96  VGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI 155
           +G++ + +++  C+ GF+LDGFPRTV QAE L+EMLE  G K+D V+ F + D +L ER+
Sbjct: 61  IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLE-YGIKLDYVIEFDVPDEVLVERL 119

Query: 156 TGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVID 215
           TGR IHP SGRSYH +F PPKV G DDVTGEPL QR DD  + +K RLE +HKQTEPVID
Sbjct: 120 TGRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVID 179

Query: 216 YYAKKGV 222
           YY KKG 
Sbjct: 180 YYKKKGK 186

Length = 186

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  301 bits (772), Expect = e-104
 Identities = 113/213 (53%), Positives = 150/213 (70%), Gaps = 4/213 (1%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           RLVL+GPPGSGKGTQ+  I ++Y L H++TGD+LR+ + A TPLG KAKE M+KGELV D
Sbjct: 1   RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 93  DLVVGIIDQAM-KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           ++V  ++ + + +    E GFILDGFPRT+ QAE LD +L++   KID V+   + D  L
Sbjct: 61  EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKE---KIDAVIELDVPDEEL 117

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
            ER++GR I P+ GR YH KF PPKV G DD TGE LIQR+DDT +V+K RLE + +QTE
Sbjct: 118 VERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTE 177

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           P+IDYY K+G+L Q+    P  EV   + + L 
Sbjct: 178 PLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  274 bits (703), Expect = 3e-94
 Identities = 106/203 (52%), Positives = 140/203 (68%), Gaps = 9/203 (4%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+GPPGSGKGTQ+  +  +Y L H++TGD+LR  +A+ T LG KAKE +D G+LV D
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++V+ ++ + +KKP C+KGFILDGFPRTV QAE LDE+L++ G K DKV+   + D +L 
Sbjct: 61  EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLI 119

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ERI GR I P SGR YH         G DDVTGEPL QR DD  + +K RLE + +QT P
Sbjct: 120 ERILGRRICPVSGRVYHL--------GKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAP 171

Query: 213 VIDYYAKKGVLAQLHAEKPPKEV 235
           +IDYY KKG L ++       EV
Sbjct: 172 LIDYYKKKGKLVEIDGSGDIDEV 194

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  186 bits (475), Expect = 6e-60
 Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 31/214 (14%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
            RL+ +GPPG+GKGTQ+ V+ +   + H++TGD+LR A+  +TPLGIKA+  MDKGELV 
Sbjct: 2   TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVP 61

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D LV+ ++ + +++P    G+ILDGFPR V QA  LDE+L++ G   ++V+N  + D ++
Sbjct: 62  DQLVLDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVV 121

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
            ER+  R                                RKDDT +V++ RLE + +QT 
Sbjct: 122 VERLLAR-------------------------------GRKDDTEEVIRRRLEVYREQTA 150

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           P+IDYY  +  L  +   +  + VT E++  L+ 
Sbjct: 151 PLIDYYRDRQKLLTIDGNQSVEAVTTELKAALAP 184

Length = 184

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  185 bits (472), Expect = 2e-59
 Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 35/213 (16%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
            R++++GPPG+GK T +  +  +  L HL TGD+LR+A+A +T LG + K+ +DKGELV 
Sbjct: 1   MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVP 60

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V G++ + + +  C+ GFILDGFPRT+ QA  L  +L++ G ++D V+   + + +L
Sbjct: 61  DEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELL 120

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
            ER+ GR +                              R+DD  + +K RL+ +H+QT 
Sbjct: 121 LERLLGRRV------------------------------REDDNEETVKKRLKVYHEQTA 150

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           P+I+YY+       +      +EV  ++ K LS
Sbjct: 151 PLIEYYSVT-----IDGSGEIEEVLADILKALS 178

Length = 178

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score =  168 bits (426), Expect = 3e-52
 Identities = 85/223 (38%), Positives = 128/223 (57%), Gaps = 22/223 (9%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRS---------AVAAKTPLGIKAKE 82
            R++L+G PG+GKGTQS  + +E+ + H+ TGD LR+              TP      E
Sbjct: 4   PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTP-----GE 58

Query: 83  AMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVL 142
            MD GELV D +V  I+++A+   S   GF+LDG+PR + QAE L+ +     T +D VL
Sbjct: 59  YMDAGELVPDAVVNEIVEEAL---SDADGFVLDGYPRNLEQAEYLESI-----TDLDVVL 110

Query: 143 NFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSR 202
              + +  L +R+TGR + P  G +YH +F  P+  G  D  G  LIQR DDT + ++ R
Sbjct: 111 YLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRER 170

Query: 203 LEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           L+ F + TEPVI++Y  +GVL ++  E+ P EV  ++Q  +  
Sbjct: 171 LDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213

Length = 215

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score =  170 bits (431), Expect = 2e-51
 Identities = 90/213 (42%), Positives = 130/213 (61%), Gaps = 21/213 (9%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           RL+L+GPPG+GKGTQ+  +  +Y +  L+TGDMLR+AVAA TP+G+KAK+ M  G LV D
Sbjct: 2   RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++VVGII   +++P    GFILDGFPRTV QAE LD +L+ +  K+D V+   +++  L 
Sbjct: 62  EVVVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALL 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            R+  R    A  R+                 GE +  R DDT +VL  RL ++  QTEP
Sbjct: 122 ARVETR---VAEMRA----------------RGEEV--RADDTPEVLAKRLASYRAQTEP 160

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++ YY++K  L  +       EVT E+ +VL++
Sbjct: 161 LVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAA 193

Length = 333

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  164 bits (415), Expect = 7e-51
 Identities = 79/212 (37%), Positives = 126/212 (59%), Gaps = 27/212 (12%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K ++ +GPPG+GKGTQ+ ++ +   +  ++TGD+LR AV  +T +GI+AK  MD G+LV 
Sbjct: 2   KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVP 61

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D +V+GII   +++  C+ GF+LDGFPRTV QA+ LD +L+ +G  IDK +N  + D  L
Sbjct: 62  DSVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGEL 121

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
            +R+ GR      GR+                         DD    +K+RL+ ++K+T 
Sbjct: 122 LKRLLGRAE--IEGRA-------------------------DDNEATIKNRLDNYNKKTL 154

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           P++D+YA +  L+Q++     +EVT  +QK L
Sbjct: 155 PLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186

Length = 186

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score =  163 bits (414), Expect = 2e-50
 Identities = 77/212 (36%), Positives = 125/212 (58%), Gaps = 5/212 (2%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           +LV +GPPGSGKGT + ++ +E    H++TGD+ R  +   TPLG + K+ ++ G+LV D
Sbjct: 2   KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            + + I++  +        FILDGFPR + QA+ LD+ L        K++NF ID+ +L 
Sbjct: 62  SITIKIVEDKINTIKNNDNFILDGFPRNINQAKALDKFLPNI-----KIINFLIDEELLI 116

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R++GR I  +    ++    P K  G  DV    L QRKDD  + LK+RL+ +  QT+P
Sbjct: 117 KRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKP 176

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +I++Y+K   L  + A K   EV  ++ +++S
Sbjct: 177 LIEFYSKCNRLNNIDASKDIDEVKKKLIEIIS 208

Length = 211

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  161 bits (410), Expect = 5e-50
 Identities = 79/211 (37%), Positives = 117/211 (55%), Gaps = 27/211 (12%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           L+L GPP +GKGTQ+  + +E  +  L+TGDMLR+A+A+ + LG + K  MD+GELVSD+
Sbjct: 3   LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDE 62

Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
           +V+ +I++ + +     G I DGFPRTV QAE LD+ML  +G KID V+   +DD  L E
Sbjct: 63  IVIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIE 122

Query: 154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV 213
           RI  R+     GR                          DD  +V  +RL+A++ QT P+
Sbjct: 123 RIVKRF--EEQGRP-------------------------DDNPEVFVTRLDAYNAQTAPL 155

Query: 214 IDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           + YYA +G L ++      + V   +   L 
Sbjct: 156 LPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186

Length = 188

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  159 bits (405), Expect = 2e-49
 Identities = 80/212 (37%), Positives = 128/212 (60%), Gaps = 32/212 (15%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           RL+ +GPPG+GKGTQ+  +   + L HL+TGD+LRS VAA + LG +A+  M++GELVSD
Sbjct: 4   RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSD 63

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            LV+ I++  +K  +   G++LDGFPRTV QAE L+ +LE+    I+ V+   +DD++L 
Sbjct: 64  ALVLAIVESQLKALNSG-GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLI 122

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+  R      GR+                         DD   V+++RLE + ++T P
Sbjct: 123 ERLLAR------GRA-------------------------DDNEAVIRNRLEVYREKTAP 151

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +ID+Y ++G+L  + A+   + +T  ++KVL+
Sbjct: 152 LIDHYRQRGLLQSVEAQGSIEAITERIEKVLA 183

Length = 183

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score =  158 bits (401), Expect = 2e-45
 Identities = 71/208 (34%), Positives = 123/208 (59%), Gaps = 11/208 (5%)

Query: 38  GPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVG 97
           G P SGKGTQ  +I  ++ L H++TGD+LR+ V+A T +G +AKE M+ G LV D++V+ 
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 98  IIDQAMKKP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT 156
           ++   + +  + EKG++LDG+PR+  QA+ L+++      + D  +   + D IL +R  
Sbjct: 64  MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKL----KIRPDIFILLDVPDEILIDRCV 119

Query: 157 GRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDY 216
           GR + P +G+ YH K  PP+     +     LI R DDT + +K+RL+ + K  E ++  
Sbjct: 120 GRRLDPVTGKIYHIKNFPPE----SEEIKARLITRPDDTEEKVKARLQIYKKNAEAILST 175

Query: 217 YAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           Y+   ++ ++   +P + V  E+  +LS
Sbjct: 176 YSD--IMVKIDGNRPKEVVFEEISSLLS 201

Length = 505

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score =  139 bits (351), Expect = 4e-41
 Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 28/213 (13%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K ++ +GPPG+GKGTQ+  +  E  L  L+TGD+LR  VA  T LG +AK  M+ G+LV 
Sbjct: 7   KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVP 66

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D+L++ +I   +      +  I DGFPRT+ QAE LD +LE+ G ++  V+   + D  L
Sbjct: 67  DELILALIRDELAGMEPVR-VIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEEL 125

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RI  R       R                        R DD  + ++ R + + +QT+
Sbjct: 126 IRRIVER------AR---------------------QEGRSDDNEETVRRRQQVYREQTQ 158

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           P++DYY  +G L ++     P EV   + K L 
Sbjct: 159 PLVDYYEARGHLKRVDGLGTPDEVYARILKALG 191

Length = 191

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score =  129 bits (325), Expect = 8e-37
 Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 21/204 (10%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           ++VL G PG GKGT + ++  +  L H+  G++LR  + AKT +G + ++ +  G LV D
Sbjct: 8   KIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPD 67

Query: 93  DLVVGIIDQAMKKPS--CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI 150
           +LV+ I+   + K +  C KGFILDGFPR + Q ++L ++     T ID  +N  +  +I
Sbjct: 68  NLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKI-----TNIDLFVNIYLPRNI 122

Query: 151 LEERITGRWIHPASGRSYHTK-----------FAPPKVHGFDDVTGEP-LIQRKDDTAQV 198
           L +++ GR I     R+++               PP     +   G P L +R DDT ++
Sbjct: 123 LIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPA--DCEGCKGNPKLQKRSDDTEEI 180

Query: 199 LKSRLEAFHKQTEPVIDYYAKKGV 222
           +  RL  +     P+I ++  +  
Sbjct: 181 VAHRLNTYESTNSPIIQFFKNENC 204

Length = 229

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  126 bits (319), Expect = 1e-35
 Identities = 71/204 (34%), Positives = 115/204 (56%), Gaps = 22/204 (10%)

Query: 35  VLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDL 94
           V +G PG GKGT +  +     + H+ATGD++R  + +  PLG + KE +++G+LV D++
Sbjct: 33  VFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEI 92

Query: 95  VVGIIDQAMKK--PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +  ++ + ++      E GFILDGFPRTV QAE L+ +     T ID V+N  + + +L 
Sbjct: 93  IFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGV-----TDIDLVVNLKLREEVLV 147

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG-------------EPLIQRKDDTAQVL 199
           E+  GR I    G++++   A   + G D   G               LI R DDT +V+
Sbjct: 148 EKCLGRRICSECGKNFNV--ADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVV 205

Query: 200 KSRLEAFHKQTEPVIDYYAKKGVL 223
           K+RL  + ++++PV D+Y K+G L
Sbjct: 206 KARLRVYKEESQPVEDFYRKRGKL 229

Length = 261

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  119 bits (300), Expect = 2e-33
 Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 32/205 (15%)

Query: 36  LIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLV 95
           ++G PGSGKGTQ   I ++Y   HL+TGD+LR+ VA+ +  G + +  M+ G+LV  D V
Sbjct: 8   IVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTV 67

Query: 96  VGIIDQAM-KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154
           + ++  AM       KGF++DG+PR V Q E+     E++      VL F   +  + +R
Sbjct: 68  LDLLKDAMVAALGTSKGFLIDGYPREVKQGEE----FERRIGPPTLVLYFDCSEDTMVKR 123

Query: 155 ITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214
           +  R     SGR                          DD  + +K RLE ++K TEPVI
Sbjct: 124 LLKR--AETSGRV-------------------------DDNEKTIKKRLETYYKATEPVI 156

Query: 215 DYYAKKGVLAQLHAEKPPKEVTVEV 239
            YY  KG L +++AE    +V ++V
Sbjct: 157 AYYETKGKLRKINAEGTVDDVFLQV 181

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score =  119 bits (301), Expect = 3e-33
 Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 1/127 (0%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
             +++ GP GSGKGTQ  ++K +Y L H+ +G + R  +   T LG KAKE +D+G+LV 
Sbjct: 1   MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVP 60

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           DD+ + +I + +K+   + G++LDGFPR  VQAEKL E L+K+G K+D V+   +   + 
Sbjct: 61  DDITIPMILETLKQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVA 119

Query: 152 EERITGR 158
           + RI GR
Sbjct: 120 KNRIMGR 126

Length = 223

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  114 bits (287), Expect = 1e-31
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 33/210 (15%)

Query: 37  IGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVV 96
           +G PGSGKGTQ   I + +   HL+ GD+LR+ + + +  G   +  +  G++V  ++ V
Sbjct: 5   LGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTV 64

Query: 97  GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKID--KVLNFAIDDSILEER 154
            ++  A++     K F++DGFPR     E L+   +    K++   VL F   + ++ +R
Sbjct: 65  KLLKNAIQA-DGSKKFLIDGFPRN---EENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120

Query: 155 ITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214
           +  R    +SGR                          DD  + +K R   +++QT PVI
Sbjct: 121 LLKR--GQSSGRV-------------------------DDNIESIKKRFRTYNEQTLPVI 153

Query: 215 DYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           ++Y  KG + +++AE   +EV  +V+K+ +
Sbjct: 154 EHYENKGKVKEINAEGSVEEVFEDVEKIFA 183

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score = 83.0 bits (205), Expect = 3e-19
 Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 53/240 (22%)

Query: 18  TELLRRFKCSSKPDKRLVLI----GPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAK 73
           TE++   +  S   ++   I    G PGSGKGTQ   I + +   HL+ GD+LR  +A+ 
Sbjct: 26  TEIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASN 85

Query: 74  TPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEK 133
           +  G      + +G++V  ++ V +I + M+     K F++DGFPRT             
Sbjct: 86  SEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNK-FLIDGFPRTE------------ 132

Query: 134 QGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK- 192
                        ++ I  ERI G               A P V  F D   E +++R  
Sbjct: 133 -------------ENRIAFERIIG---------------AEPNVVLFFDCPEEEMVKRVL 164

Query: 193 -------DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
                  DD    +K RL+ F+    PVIDYY+KKG L  ++A     E+  +V+ + ++
Sbjct: 165 NRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAA 224

Length = 234

>gnl|CDD|218488 pfam05191, ADK_lid, Adenylate kinase, active site lid

 Score = 70.7 bits (174), Expect = 1e-16
 Identities = 19/36 (52%), Positives = 22/36 (61%)

Query: 158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKD 193
           R + P+ GR YH KF PPKV G  D  G  L+QR D
Sbjct: 1   RRVCPSCGRIYHVKFNPPKVEGVCDKCGGELVQRDD 36

Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain, is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function. Length = 36

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 16/126 (12%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +++ GPPGSGK T +  + ++  +  ++  D+LR           +    +D GEL   
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLRE----------EGLAELDDGELDDI 50

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D+ + ++++ + +   ++ +++DG   +      L+  LE+    +   L        L 
Sbjct: 51  DIDLELLEEILDEL-AKQEWVIDGVREST-----LELRLEEADLVVFLDLPLPACRFRLL 104

Query: 153 ERITGR 158
           +R   R
Sbjct: 105 KRRLQR 110

Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PLN02674	244	adenylate kinase	100.0
PRK14526	211	adenylate kinase; Provisional	100.0
PRK00279	215	adk adenylate kinase; Reviewed	100.0
PLN02459	261	probable adenylate kinase	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PTZ00088	229	adenylate kinase 1; Provisional	100.0
PRK14530	215	adenylate kinase; Provisional	100.0
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
PRK14532	188	adenylate kinase; Provisional	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	100.0
PRK14527	191	adenylate kinase; Provisional	100.0
PLN02842	505	nucleotide kinase	100.0
PRK02496	184	adk adenylate kinase; Provisional	100.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	100.0
PLN02200	234	adenylate kinase family protein	100.0
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.97
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.96
PRK13974	212	thymidylate kinase; Provisional	99.78
PRK01184	184	hypothetical protein; Provisional	99.76
PRK03839	180	putative kinase; Provisional	99.75
PRK13973	213	thymidylate kinase; Provisional	99.73
PRK06217	183	hypothetical protein; Validated	99.72
PRK08356	195	hypothetical protein; Provisional	99.71
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.69
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.68
PRK13949	169	shikimate kinase; Provisional	99.68
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.67
PRK13975	196	thymidylate kinase; Provisional	99.67
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.65
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.64
PRK13948	182	shikimate kinase; Provisional	99.63
PHA02530	300	pseT polynucleotide kinase; Provisional	99.63
PRK03731	171	aroL shikimate kinase II; Reviewed	99.63
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.63
PLN02924	220	thymidylate kinase	99.62
PLN02422	232	dephospho-CoA kinase	99.6
PRK04040	188	adenylate kinase; Provisional	99.6
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.6
PRK13947	171	shikimate kinase; Provisional	99.59
PRK00625	173	shikimate kinase; Provisional	99.59
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.59
PRK00698	205	tmk thymidylate kinase; Validated	99.59
PRK00131	175	aroK shikimate kinase; Reviewed	99.58
PRK08233	182	hypothetical protein; Provisional	99.58
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.58
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.58
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.58
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.57
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.57
PLN02199	303	shikimate kinase	99.57
PRK13946	184	shikimate kinase; Provisional	99.57
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.57
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.57
PRK05057	172	aroK shikimate kinase I; Reviewed	99.57
PRK08118	167	topology modulation protein; Reviewed	99.56
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.56
PRK07933	213	thymidylate kinase; Validated	99.56
PRK04182	180	cytidylate kinase; Provisional	99.56
PTZ00451	244	dephospho-CoA kinase; Provisional	99.55
PRK06762	166	hypothetical protein; Provisional	99.55
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.54
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.53
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.52
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.51
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.5
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.5
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.5
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.49
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.47
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.46
PRK13976	209	thymidylate kinase; Provisional	99.46
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.45
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.43
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.42
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.42
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.4
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.4
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.39
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.36
PRK07261	171	topology modulation protein; Provisional	99.34
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.33
PRK09825	176	idnK D-gluconate kinase; Provisional	99.33
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.32
PRK14738	206	gmk guanylate kinase; Provisional	99.31
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.3
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.3
PRK06547	172	hypothetical protein; Provisional	99.3
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.3
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.28
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.26
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.22
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.21
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.21
PRK05480	209	uridine/cytidine kinase; Provisional	99.2
PRK06696	223	uridine kinase; Validated	99.19
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.16
PRK05541	176	adenylylsulfate kinase; Provisional	99.16
PRK11545	163	gntK gluconate kinase 1; Provisional	99.15
PRK00300	205	gmk guanylate kinase; Provisional	99.14
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.13
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.13
PRK07667	193	uridine kinase; Provisional	99.12
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.12
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.09
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.09
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.08
PRK00023	225	cmk cytidylate kinase; Provisional	99.08
PRK14737	186	gmk guanylate kinase; Provisional	99.07
COG0645	170	Predicted kinase [General function prediction only	99.07
PRK12338	319	hypothetical protein; Provisional	99.06
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.06
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.04
PRK00889	175	adenylylsulfate kinase; Provisional	99.02
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.99
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.98
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.97
PRK03846	198	adenylylsulfate kinase; Provisional	98.97
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.96
PHA03132	580	thymidine kinase; Provisional	98.95
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	98.91
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.91
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.9
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.89
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.89
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.86
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.86
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.85
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.85
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.84
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.82
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.8
PRK07429	327	phosphoribulokinase; Provisional	98.78
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.77
PTZ00301	210	uridine kinase; Provisional	98.76
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.75
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.75
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.74
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.74
COG4639	168	Predicted kinase [General function prediction only	98.74
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.66
PLN02348	395	phosphoribulokinase	98.65
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.62
COG1660	286	Predicted P-loop-containing kinase [General functi	98.59
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.59
PHA00729	226	NTP-binding motif containing protein	98.57
PRK05439	311	pantothenate kinase; Provisional	98.56
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.52
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.49
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.48
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.44
PLN02772	398	guanylate kinase	98.44
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.43
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.36
COG3709	192	Uncharacterized component of phosphonate metabolis	98.34
PRK15453	290	phosphoribulokinase; Provisional	98.31
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.3
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.24
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	98.12
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	98.11
PF00004	132	AAA: ATPase family associated with various cellula	98.1
PLN02165	334	adenylate isopentenyltransferase	98.08
PF05191	36	ADK_lid: Adenylate kinase, active site lid; InterP	98.08
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.07
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.04
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.03
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.03
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.02
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.01
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	98.01
PHA03136	378	thymidine kinase; Provisional	98.0
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.99
PRK09169	2316	hypothetical protein; Validated	97.98
PLN02318	656	phosphoribulokinase/uridine kinase	97.98
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.9
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.9
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.89
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.88
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.88
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.87
CHL00181	287	cbbX CbbX; Provisional	97.86
PLN02840	421	tRNA dimethylallyltransferase	97.84
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.84
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.82
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.81
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	97.78
PF13173	128	AAA_14: AAA domain	97.77
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.75
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.75
PLN02748	468	tRNA dimethylallyltransferase	97.72
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.72
KOG3062	281	consensus RNA polymerase II elongator associated p	97.71
PRK06761	282	hypothetical protein; Provisional	97.7
smart00382	148	AAA ATPases associated with a variety of cellular	97.69
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.68
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.67
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.66
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.64
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.62
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.62
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.61
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.6
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.6
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.59
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.58
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.58
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.57
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.56
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.56
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.55
PRK10646	153	ADP-binding protein; Provisional	97.52
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.51
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.5
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.49
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.49
PHA03134	340	thymidine kinase; Provisional	97.49
PHA03135	343	thymidine kinase; Provisional	97.48
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.47
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.47
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.46
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.46
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.46
PLN02796	347	D-glycerate 3-kinase	97.45
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.45
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.44
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.44
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.43
CHL00195	489	ycf46 Ycf46; Provisional	97.42
PRK12377	248	putative replication protein; Provisional	97.42
COG0802	149	Predicted ATPase or kinase [General function predi	97.42
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.41
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.41
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.41
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	97.4
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.39
PLN03046	460	D-glycerate 3-kinase; Provisional	97.39
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	97.39
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.39
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.38
PRK09087	226	hypothetical protein; Validated	97.37
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.36
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.34
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.34
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.34
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.34
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.33
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.33
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.33
PRK04195	482	replication factor C large subunit; Provisional	97.32
PF13245	76	AAA_19: Part of AAA domain	97.32
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.32
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.32
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.31
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.31
PRK06526	254	transposase; Provisional	97.31
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.3
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.3
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.3
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.29
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.29
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.27
PRK08116	268	hypothetical protein; Validated	97.27
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.27
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.27
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.26
PF05729	166	NACHT: NACHT domain	97.24
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.24
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.21
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.21
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.2
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	97.2
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.19
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.19
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.17
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.17
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.16
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.16
PRK12402	337	replication factor C small subunit 2; Reviewed	97.14
PHA02244	383	ATPase-like protein	97.13
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.12
PRK06620	214	hypothetical protein; Validated	97.12
PF07726	131	AAA_3: ATPase family associated with various cellu	97.12
PHA02624	647	large T antigen; Provisional	97.11
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.1
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.1
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.09
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.09
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.09
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.09
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.07
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.07
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.07
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.07
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.07
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.07
KOG4622	291	consensus Predicted nucleotide kinase [General fun	97.06
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.06
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.06
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.05
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.05
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.04
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.04
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.04
PRK13695	174	putative NTPase; Provisional	97.04
COG3911	183	Predicted ATPase [General function prediction only	97.03
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.03
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.02
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.02
PRK08181	269	transposase; Validated	97.02
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.02
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.02
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.02
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.02
PRK10416	318	signal recognition particle-docking protein FtsY;	97.02
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.01
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.01
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.01
COG1855	604	ATPase (PilT family) [General function prediction	97.01
CHL00176	638	ftsH cell division protein; Validated	97.01
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.01
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.0
PRK08084	235	DNA replication initiation factor; Provisional	96.99
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.99
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.99
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.98
PRK06893	229	DNA replication initiation factor; Validated	96.98
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	96.98
PRK09183	259	transposase/IS protein; Provisional	96.98
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.98
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.97
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.97
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.97
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.97
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.97
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.97
PRK13342	413	recombination factor protein RarA; Reviewed	96.97
PRK14974	336	cell division protein FtsY; Provisional	96.97
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.96
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.96
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.96
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.96
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.95
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.95
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.95
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.95
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.94
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.94
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.94
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.94
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.94
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.94
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.94
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.94
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.93
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.93
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.93
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.93
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.93
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.92
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.92
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.92
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.91
PHA02544	316	44 clamp loader, small subunit; Provisional	96.91
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.91
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.91
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.91
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.91
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.9
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.9
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.9
PRK15455	644	PrkA family serine protein kinase; Provisional	96.9
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.9
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.9
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.9
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	96.9
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.9
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.9
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.89
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.89
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.89
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.89
cd03246	173	ABCC_Protease_Secretion This family represents the	96.89
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.89
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.89
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.89
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	96.89
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.88
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.88
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.88
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.88
PRK08939	306	primosomal protein DnaI; Reviewed	96.88
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.88
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.88
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.88
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.87
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.87
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.87
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.86
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.86
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	96.86
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.86
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.85
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.85
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.85
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.85
PRK10908	222	cell division protein FtsE; Provisional	96.84
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.84
COG4559	259	ABC-type hemin transport system, ATPase component	96.84
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.84
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.84
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.83
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.83
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.83
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.83
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.83
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.83
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.82
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.82
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.82
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.82
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.82
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.82
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.81
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.81
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.81
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	96.81
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.81
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.81
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	96.81
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.81
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.8
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.8
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.8
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.8
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.8
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.8
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.8
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.8
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.79
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.79
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	96.79
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.79
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	96.79
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	96.79
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.79
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.79
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.78
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.78
PF13479	213	AAA_24: AAA domain	96.78
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	96.78
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.77
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.77
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.77
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.77
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.77
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	96.77
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.76
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	96.76
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	96.76
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	96.76
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.76
PLN03025	319	replication factor C subunit; Provisional	96.76
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	96.76
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.76
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.76
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.75
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	96.75
PRK06835	329	DNA replication protein DnaC; Validated	96.75
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.75
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.75
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	96.75
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.74
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	96.74
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.74
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.74
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	96.74
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	96.73
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.73
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	96.73
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.73
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.73
CHL00206	2281	ycf2 Ycf2; Provisional	96.73
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.73
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	96.72
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.72
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.72
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	96.72
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.72
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	96.72
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	96.71

>PLN02674 adenylate kinase

Probab=100.00  E-value=1.6e-48  Score=317.11  Aligned_cols=241  Identities=90%  Similarity=1.366  Sum_probs=229.8

Q ss_pred             cccccCCCChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHH
Q 025970            4 SAVALEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEA   83 (245)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~   83 (245)
                      ++-.++++|..+++.++.+++.+..++++.|+|+|+|||||||+|+.|+++||+++|++++++|+++..+++.|..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~   83 (244)
T PLN02674          4 AAANLEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEA   83 (244)
T ss_pred             cccccccCchHHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHH
Confidence            34578899999999999999988777788999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970           84 MDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA  163 (245)
Q Consensus        84 l~~~~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~  163 (245)
                      +..|..+|++++..++.+++....+.+|||+||||++..|+..|+.++...+..++.+|+|++|++++++|+..|++|+.
T Consensus        84 ~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~  163 (244)
T PLN02674         84 MDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPS  163 (244)
T ss_pred             HHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccc
Confidence            99999999999999999999888777899999999999999999988877788899999999999999999999999999


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                      ||+.||..|.||..++.|+.|+++|.+|.+|+.+.+++|++.|++.+.++.+||.+.+.++.||+++++++++..|..+|
T Consensus       164 ~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        164 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             cCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      .
T Consensus       244 ~  244 (244)
T PLN02674        244 S  244 (244)
T ss_pred             C
Confidence            3

>PRK14526 adenylate kinase; Provisional

Probab=100.00  E-value=5.9e-41  Score=269.27  Aligned_cols=208  Identities=37%  Similarity=0.668  Sum_probs=195.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|+|+|||||||+++.|++.+++.++++++++++.+..+++.|..+..++..|..+|+.++..++.+++......++
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g   80 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN   80 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence            46899999999999999999999999999999999999998999999999999999999999999999999988767789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      |||||||++..|+..|...+     ....+|+|++|++++++|+.+|+.|+.||+.||..|+||..++.|+.|++++.+|
T Consensus        81 ~ilDGfPR~~~Qa~~l~~~~-----~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R  155 (211)
T PRK14526         81 FILDGFPRNINQAKALDKFL-----PNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQR  155 (211)
T ss_pred             EEEECCCCCHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeecc
Confidence            99999999999999887642     1246888999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      .+|+.+.+++|+..|++...++.+||...+.++.|||+++++++++.|.+.|.
T Consensus       156 ~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~  208 (211)
T PRK14526        156 KDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIIS  208 (211)
T ss_pred             CCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            99999999999999999999999999998899999999999999999999875

>PRK00279 adk adenylate kinase; Reviewed

Probab=100.00  E-value=1e-40  Score=270.26  Aligned_cols=214  Identities=52%  Similarity=0.905  Sum_probs=203.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|+|+|||||||+|+.|+++||+.++++++++++.+...++.+..+..++..|..+|++++..++..++....+.+|
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g   80 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG   80 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence            47999999999999999999999999999999999999998899999999999999999999999999999887766679


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      |||||||++..|+..|.+.+...+..++.+|+|+||++++++|+.+|..|+.||..||..++||+..+.++.|++++..|
T Consensus        81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r  160 (215)
T PRK00279         81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR  160 (215)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence            99999999999999998887777778899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                      .+++.+.+++|+..|++++.++.+||...+.++.|||+++++++++.|.+.|.+
T Consensus       161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999888899999999999999999998863

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=1.5e-40  Score=271.46  Aligned_cols=222  Identities=33%  Similarity=0.577  Sum_probs=197.7

Q ss_pred             HHHHHHHHhccCC--CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH
Q 025970           16 MMTELLRRFKCSS--KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD   93 (245)
Q Consensus        16 ~~~~~~~~~~~~~--~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~   93 (245)
                      +-+.++..-..++  .+++.|+|+|+|||||||+|+.|++.||+.++++++++|+++..++++|..+..++..|..+|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPde   91 (261)
T PLN02459         12 LADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDE   91 (261)
T ss_pred             chhhccccccCCccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHH
Confidence            3344444443333  35688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccccc
Q 025970           94 LVVGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTK  171 (245)
Q Consensus        94 ~~~~~l~~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~  171 (245)
                      ++..++..++...  ....||||||||++..|+..|...     ..++.+|+|++|++++++|+.+|++|+.||+.||..
T Consensus        92 iv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~-----~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~  166 (261)
T PLN02459         92 IIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGV-----TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVA  166 (261)
T ss_pred             HHHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhc-----CCCCEEEEEECCHHHHHHHhhccccccccCcccccc
Confidence            9999999999875  245899999999999999988754     357999999999999999999999999999999986


Q ss_pred             C-------------CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHH
Q 025970          172 F-------------APPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVE  238 (245)
Q Consensus       172 ~-------------~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~  238 (245)
                      +             +||..+  ++.|+++|.+|.+|.++.+++|++.|++.+.++.+||.+.+.++.||+++++++++..
T Consensus       167 ~~~~~~~~~~~~~~~~p~~~--~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~  244 (261)
T PLN02459        167 DIDLKGEDGRPGIVMPPLLP--PPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPR  244 (261)
T ss_pred             ccccccccccccccCCCCCC--CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHH
Confidence            4             566443  3578899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 025970          239 VQKVLS  244 (245)
Q Consensus       239 i~~~l~  244 (245)
                      |..+|.
T Consensus       245 i~~~l~  250 (261)
T PLN02459        245 LLQALN  250 (261)
T ss_pred             HHHHhc
Confidence            998874

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=2.1e-40  Score=266.70  Aligned_cols=212  Identities=33%  Similarity=0.559  Sum_probs=192.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|.|+|||||||+|+.|++.|++.++++++++++.+..+++++..++.++..|..+|++++..++..++.... .+|
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g   79 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNG   79 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCc
Confidence            4689999999999999999999999999999999999998899999999999999999999999999999998876 789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCC-CCCCC-CCCCCCCCccc
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFA-PPKVH-GFDDVTGEPLI  189 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~-~p~~~-~~~~~~~~~l~  189 (245)
                      ||+||||++..|+..|...+...+..|+.+|+|++|++++++|+..|+.|+.||..|+..+. ||..+ +.|+.|+++|.
T Consensus        80 ~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~  159 (223)
T PRK14529         80 WLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELS  159 (223)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccc
Confidence            99999999999999999888777788999999999999999999999999998876655554 45444 48999999999


Q ss_pred             cCCCCc-HHHHHHHHHHHHHh---hHHHHHHHHh-----cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          190 QRKDDT-AQVLKSRLEAFHKQ---TEPVIDYYAK-----KGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       190 ~~~~~~-~~~~~~rl~~~~~~---~~~l~~~~~~-----~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      +|.||+ ++.+++|+..|++.   ..++.+||.+     .+.++.|||+++++++++.|..+|.
T Consensus       160 ~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l~  223 (223)
T PRK14529        160 TRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQLS  223 (223)
T ss_pred             cCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence            999996 78999999999997   4578899985     6789999999999999999998763

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=1.2e-39  Score=263.13  Aligned_cols=208  Identities=54%  Similarity=0.899  Sum_probs=194.2

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCCce
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS-CEKGF  112 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~-~~~~~  112 (245)
                      |+|+|+|||||||+|+.|+++||+.+|++++++++.+...++.+..+..++..|..+|++++..++..++.... ...+|
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            78999999999999999999999999999999999998889999999999999999999999999999998754 35799


Q ss_pred             EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025970          113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK  192 (245)
Q Consensus       113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~  192 (245)
                      ||||||++..|+..|...+.   ..|+.+|+|++|++++++|+.+|+.|+.||+.||..|.||...+.|+.|++++..|.
T Consensus        82 ilDGfPrt~~Qa~~l~~~~~---~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~  158 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDALLK---EKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRE  158 (210)
T ss_pred             EEeCCCCCHHHHHHHHHHhc---cCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCC
Confidence            99999999999998876542   158999999999999999999999999999999999999988888888999999999


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       193 ~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      +|+.+.+++|+..|++.+.++.+||.+.+.++.|||+++++++++.|.+.|.
T Consensus       159 dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  210 (210)
T TIGR01351       159 DDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK  210 (210)
T ss_pred             CCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence            9999999999999999999999999998899999999999999999998763

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PTZ00088 adenylate kinase 1; Provisional

Probab=100.00  E-value=3.1e-38  Score=256.18  Aligned_cols=211  Identities=30%  Similarity=0.558  Sum_probs=190.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK--  105 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~--  105 (245)
                      ...|+.|+|+|+|||||||+|+.|+++||++++++++++++++..++++|..+..++..|..+|++++..++..++..  
T Consensus         3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~   82 (229)
T PTZ00088          3 LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT   82 (229)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence            346788999999999999999999999999999999999999988899999999999999999999999999999887  


Q ss_pred             CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccC-------CCCC-C
Q 025970          106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKF-------APPK-V  177 (245)
Q Consensus       106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~-------~~p~-~  177 (245)
                      .....|||+||||++..|+..|...     ..|+++|+|++|.+++++|+..|++|+.||+.||..+       .||. .
T Consensus        83 ~~~~~g~iLDGfPRt~~Qa~~l~~~-----~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~  157 (229)
T PTZ00088         83 DDCFKGFILDGFPRNLKQCKELGKI-----TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILP  157 (229)
T ss_pred             cccCceEEEecCCCCHHHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCC
Confidence            3455799999999999999887643     4689999999999999999999999999999999974       2433 3


Q ss_pred             CCCCCCCCC--ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCc-EEEE---eCCCChhHHHHHHHHhh
Q 025970          178 HGFDDVTGE--PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGV-LAQL---HAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       178 ~~~~~~~~~--~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~-~~~i---d~~~~~e~v~~~i~~~l  243 (245)
                      ++.|+.|+.  ++.+|.+|+++.+.+|++.|++...++.++|.+.+. ++.+   |++++++++++.|...+
T Consensus       158 ~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~  229 (229)
T PTZ00088        158 PADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL  229 (229)
T ss_pred             CCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence            567888884  899999999999999999999999999999999998 8888   79999999999987653

>PRK14530 adenylate kinase; Provisional

Probab=100.00  E-value=6.7e-37  Score=247.93  Aligned_cols=206  Identities=40%  Similarity=0.734  Sum_probs=186.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH-----HcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV-----AAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK  105 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~  105 (245)
                      .+.|+|+|+|||||||+|+.|+++||++++++++++++..     ..++..+. ...++..|..+|+.....++...+..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            3479999999999999999999999999999999999876     23445554 67788899999999998888877654


Q ss_pred             CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970          106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG  185 (245)
Q Consensus       106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~  185 (245)
                         ..+||+||||++..|+..|...     ..++.+|+|++|++++++|+.+|+.++.+|+.||..|.||..++.++.|+
T Consensus        82 ---~~~~IldG~pr~~~q~~~l~~~-----~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~  153 (215)
T PRK14530         82 ---ADGFVLDGYPRNLEQAEYLESI-----TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECG  153 (215)
T ss_pred             ---CCCEEEcCCCCCHHHHHHHHHh-----cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccC
Confidence               3589999999999998877653     35799999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                      .++..|.+++.+.+++|+..|++.+.++.+||.+.+.++.|||+++++++++.|...|.+
T Consensus       154 ~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        154 GELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999888899999999999999999998863

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.5e-35  Score=225.36  Aligned_cols=188  Identities=34%  Similarity=0.592  Sum_probs=173.2

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK  105 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~  105 (245)
                      .+..+++|+|.|+|||||-|+|.+++++||+.|+|+++++|++... +++.|..+.+++++|..+|.++...++.+++..
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~   83 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS   83 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence            4456889999999999999999999999999999999999999998 999999999999999999999999999999988


Q ss_pred             CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970          106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG  185 (245)
Q Consensus       106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~  185 (245)
                      ....++|+|||||++..|...|+..+.   ..+++++|+||+.+++++|+..|...                        
T Consensus        84 ~~~~~~fLIDGyPR~~~q~~~fe~~i~---~~~~fvl~fdc~ee~~l~Rll~R~q~------------------------  136 (195)
T KOG3079|consen   84 SGDSNGFLIDGYPRNVDQLVEFERKIQ---GDPDFVLFFDCPEETMLKRLLHRGQS------------------------  136 (195)
T ss_pred             cCCCCeEEecCCCCChHHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHhhccc------------------------
Confidence            776677999999999999999998753   26899999999999999999999631                        


Q ss_pred             CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                         ..|.||+.+.+++|++.|.+...|+.+||++.++++.|+++.++++++..|...+.
T Consensus       137 ---~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id  192 (195)
T KOG3079|consen  137 ---NSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID  192 (195)
T ss_pred             ---CCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhh
Confidence               12679999999999999999999999999999999999999999999999988774

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=9.4e-36  Score=237.27  Aligned_cols=215  Identities=53%  Similarity=0.912  Sum_probs=200.4

Q ss_pred             ccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970           25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK  104 (245)
Q Consensus        25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~  104 (245)
                      .+..+++..++++|+||+||+|++.++++.|++.|+++++++|..+...++.|...++++..|..+|++++..++...+.
T Consensus         9 ~~~~~~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~   88 (235)
T KOG3078|consen    9 DEDEKKGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLE   88 (235)
T ss_pred             ccccccceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcc
Confidence            34445788999999999999999999999999999999999999999999999999999999999999999997777787


Q ss_pred             CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCC
Q 025970          105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT  184 (245)
Q Consensus       105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~  184 (245)
                      ...+.++|++||||++..++..+.    .++..+|.+|.|.+|++.+.+|+..|+.|+.+|+.||..|+||...+.+|..
T Consensus        89 ~~~~~~~~ildg~Prt~~qa~~l~----~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDit  164 (235)
T KOG3078|consen   89 NPRCQKGFILDGFPRTVQQAEELL----DRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDIT  164 (235)
T ss_pred             ccccccccccCCCCcchHHHHHHH----HccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccc
Confidence            777889999999999999887633    4567899999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       185 ~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      +++|.+|.+|.++.+..|+..|++...++.+||...+.+..+++.. .+++|..|...+.
T Consensus       165 gepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~  223 (235)
T KOG3078|consen  165 GEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLS  223 (235)
T ss_pred             cChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 8999999988764

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=1.7e-34  Score=243.55  Aligned_cols=192  Identities=45%  Similarity=0.759  Sum_probs=174.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|+|+|||||||+|+.|++.||+++|+++++++.++..+++.|..+.+++..|..+|++++..++.+++....+.+|
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G   80 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG   80 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999988777789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      |||||||++..|...|+.++...+..||++|+|++|++++++|+..|..+...                   ++  ...|
T Consensus        81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~-------------------rg--~~~R  139 (333)
T PRK13808         81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA-------------------RG--EEVR  139 (333)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-------------------cC--CccC
Confidence            99999999999999999888777889999999999999999999998642100                   01  1236


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      .+++.+.+++|+..|++.+.++.+||.+.+.++.||++.++++|+..|...|.
T Consensus       140 ~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~  192 (333)
T PRK13808        140 ADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLA  192 (333)
T ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHH
Confidence            78899999999999999999999999988889999999999999999998874

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=1.1e-33  Score=223.94  Aligned_cols=185  Identities=42%  Similarity=0.764  Sum_probs=170.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      +.|+|+|+|||||||+|+.|++.||+++++++++++..+..++++|..+..++..|..+|+..+..++..++....+.++
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999988777789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      ||+||||++..|+..|.+.+...+..++.+|+|+||++++++|+..|..+                           .+|
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~---------------------------~gr  134 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI---------------------------EGR  134 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc---------------------------cCC
Confidence            99999999999999999888777778999999999999999999999642                           136


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                      .+++.+.+.+|+..|++...++.++|...+.++.||+++++++++..|...+
T Consensus       135 ~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~  186 (186)
T PRK14528        135 ADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL  186 (186)
T ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence            7889999999999999999999999999999999999999999999998754

>PRK14532 adenylate kinase; Provisional

Probab=100.00  E-value=3.1e-33  Score=221.98  Aligned_cols=186  Identities=42%  Similarity=0.726  Sum_probs=170.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|+|+|||||||+|+.|++++|+.++++++++++.+..+++.+..+..++..|..+|++++..++...+....+..|
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g   80 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            46899999999999999999999999999999999999988899999999999999999999999999999887777789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      ||+||||++..|+..+.+.+...+..|+.+|+|++|++++.+|+.+|..+                           ..|
T Consensus        81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~---------------------------~~r  133 (188)
T PRK14532         81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE---------------------------QGR  133 (188)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc---------------------------CCC
Confidence            99999999999999998888777888999999999999999999988521                           125


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ++++.+.+.+|+..|+....++.++|.+.+.++.||++.+++++++.|...|.
T Consensus       134 ~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        134 PDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            77888899999999999999999999987889999999999999999998874

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=4.7e-33  Score=219.96  Aligned_cols=180  Identities=44%  Similarity=0.751  Sum_probs=166.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      +.|+|+|+|||||||+|+.|+++||++++++++++++++..+++.+..+..++..|..+|+.++..++..++... ..++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~g   81 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSGG   81 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCCc
Confidence            479999999999999999999999999999999999999989999999999999999999999999988887654 3568


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      ||+||||++..|+..|...+...+..++.+|+|+||++++.+|+..|.                               +
T Consensus        82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~-------------------------------r  130 (183)
T PRK14531         82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG-------------------------------R  130 (183)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC-------------------------------C
Confidence            999999999999999988887777788999999999999999999984                               4


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                      .+++.+.+.+|+..|++...++.++|...+.++.||+++++++++..|...|
T Consensus       131 ~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        131 ADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            6778899999999999999999999998889999999999999999998876

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=100.00  E-value=1.1e-32  Score=219.64  Aligned_cols=194  Identities=55%  Similarity=0.930  Sum_probs=175.6

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  112 (245)
                      +|+|+|+|||||||+|+.|+++||+.++++++++++.+...++.+..+..++..|..+|++++..++...+.......+|
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~   80 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF   80 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence            48999999999999999999999999999999999998888889999999999999999999999999988776556799


Q ss_pred             EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025970          113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK  192 (245)
Q Consensus       113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~  192 (245)
                      |+||||++..|+..|...+.. ...|+++|+|++|++++.+|+.+|..++.+|..||.        ..++.|+.++..|.
T Consensus        81 vldg~Pr~~~q~~~l~~~~~~-~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~--------~~~~~~~~~l~~r~  151 (194)
T cd01428          81 ILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL--------GKDDVTGEPLSQRS  151 (194)
T ss_pred             EEeCCCCCHHHHHHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc--------CCCcccCCccccCC
Confidence            999999999999988776432 236899999999999999999999999999999998        33445678899999


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHH
Q 025970          193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEV  235 (245)
Q Consensus       193 ~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v  235 (245)
                      ++..+.+++|+..|++.+.++.+||.+.+.++.||++++++++
T Consensus       152 dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         152 DDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            9999999999999999999999999998899999999998764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14527 adenylate kinase; Provisional

Probab=100.00  E-value=4.7e-32  Score=215.74  Aligned_cols=189  Identities=37%  Similarity=0.636  Sum_probs=171.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      ....|++|+|+|+|||||||+++.|+++||+.++++++++++....+++++..+..++.+|..+|++++..++...+...
T Consensus         2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~   81 (191)
T PRK14527          2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM   81 (191)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            34567899999999999999999999999999999999999998888999999999999999999999999999888765


Q ss_pred             CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                      .+ .+||+||||++..|+..|...+...+..++.+|+|+||++++.+|+.+|...                         
T Consensus        82 ~~-~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~-------------------------  135 (191)
T PRK14527         82 EP-VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ-------------------------  135 (191)
T ss_pred             CC-CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc-------------------------
Confidence            44 5799999999999999888887777788899999999999999999998631                         


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                        .+|.+++.+.+++|++.|++...++.++|.+.+.++.||++++++++++.|...|
T Consensus       136 --~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        136 --EGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             --CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence              1367888999999999999999999999999889999999999999999998875

>PLN02842 nucleotide kinase

Probab=100.00  E-value=1.5e-32  Score=242.09  Aligned_cols=199  Identities=36%  Similarity=0.681  Sum_probs=182.2

Q ss_pred             EECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-CCceEE
Q 025970           36 LIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC-EKGFIL  114 (245)
Q Consensus        36 i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~-~~~~ii  114 (245)
                      |+|+|||||||+|+.|+++|++.++++++++++++..++++|..+++++.+|..+|+..+..++.+++....+ .+|||+
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL   81 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL   81 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999877553 478999


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCC
Q 025970          115 DGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDD  194 (245)
Q Consensus       115 dg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~  194 (245)
                      ||||++..|+..|..    .+..|+++|+|++|++++++|+.+|+.|+.||..||..+.||..+.    +++++.+|.+|
T Consensus        82 DGfPRt~~Qa~~Le~----~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~----~~~rL~~R~DD  153 (505)
T PLN02842         82 DGYPRSFAQAQSLEK----LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEE----IKARLITRPDD  153 (505)
T ss_pred             eCCCCcHHHHHHHHh----cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccc----cccccccCCCC
Confidence            999999999887654    3468999999999999999999999999999999999999986543    34688999999


Q ss_pred             cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          195 TAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       195 ~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      +.+.+++|++.|++...++.++|..  .++.||++.+++++++.|.+.|.
T Consensus       154 ~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~  201 (505)
T PLN02842        154 TEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLS  201 (505)
T ss_pred             CHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999964  68899999999999999988775

>PRK02496 adk adenylate kinase; Provisional

Probab=100.00  E-value=1.5e-31  Score=211.57  Aligned_cols=182  Identities=44%  Similarity=0.809  Sum_probs=167.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      +.|+|+|+|||||||+|+.|++.||++++++++++++.+..+++.|..+..++..|..+|++++..++..++....+..+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            57899999999999999999999999999999999999988899999999999999999999999999999887766789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      ||+||||++..|...+...+...+..|+.+|+|++|++++.+|+..|.                               +
T Consensus        82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~-------------------------------~  130 (184)
T PRK02496         82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG-------------------------------R  130 (184)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC-------------------------------C
Confidence            999999999999988887776666789999999999999999999884                               3


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      .++..+.+++|+..|.+...++.++|...+.++.||++++++++++.|...|.
T Consensus       131 ~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        131 KDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA  183 (184)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence            46678899999999999999999999887889999999999999999998774

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=100.00  E-value=4.7e-31  Score=208.56  Aligned_cols=182  Identities=29%  Similarity=0.559  Sum_probs=162.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  112 (245)
                      +|+|+|+|||||||+|+.|++++|+.++++++++++.+..+++.+..+..++.+|..+|++++..++..++.... .++|
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~   79 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKF   79 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcE
Confidence            479999999999999999999999999999999999998888899999999999999999999999998887655 6789


Q ss_pred             EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025970          113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK  192 (245)
Q Consensus       113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~  192 (245)
                      |+||||++..+...|...+. .+..|+.+|+|++|++++++|+..|...                           ..+.
T Consensus        80 vlDg~p~~~~q~~~~~~~~~-~~~~~d~~i~l~~~~~~~~~Rl~~R~~~---------------------------~~r~  131 (183)
T TIGR01359        80 LIDGFPRNEENLEAWEKLMD-NKVNFKFVLFFDCPEEVMIKRLLKRGQS---------------------------SGRV  131 (183)
T ss_pred             EEeCCCCCHHHHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHhcCCcc---------------------------CCCC
Confidence            99999999999998887653 3357899999999999999999998531                           1245


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       193 ~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                      +++.+.+++|+..|.+...++.++|...+.++.||++++++++++.|.+.|
T Consensus       132 dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       132 DDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            678899999999999999999999988778999999999999999999876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=100.00  E-value=5e-31  Score=215.28  Aligned_cols=183  Identities=31%  Similarity=0.558  Sum_probs=164.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      +.|++|+|+|+|||||||+|+.|++++|+.++++++++++.+...++.+..+..++..|..+|++....++..++.... 
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~-  119 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD-  119 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence            4578999999999999999999999999999999999999998889999999999999999999999998888876543 


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      ..+|||||||++..|+..|.+.+   +..|+.+|+|++|++++.+|+.+|+.                            
T Consensus       120 ~~~~ILDG~Prt~~q~~~l~~~~---~~~pd~vi~Ld~~~e~~~~Rl~~R~~----------------------------  168 (234)
T PLN02200        120 NNKFLIDGFPRTEENRIAFERII---GAEPNVVLFFDCPEEEMVKRVLNRNQ----------------------------  168 (234)
T ss_pred             CCeEEecCCcccHHHHHHHHHHh---ccCCCEEEEEECCHHHHHHHHHcCcC----------------------------
Confidence            46899999999999998887654   35789999999999999999998852                            


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                       .|.+++.+.+++|++.|++...++.++|.+.+.++.||++++++++++.|.+.+.
T Consensus       169 -~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~  223 (234)
T PLN02200        169 -GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFA  223 (234)
T ss_pred             -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence             2456788999999999999999999999988889999999999999999998775

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.97  E-value=6e-30  Score=200.04  Aligned_cols=177  Identities=40%  Similarity=0.787  Sum_probs=166.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|+|||||||+|+.|+++++++|+|++++++......++++..++.++..|..+|+.+...++..++...++..+
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~   80 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG   80 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999988876669


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      ||+||||++..|+..+...+.+.|...+.++.++++.+.++.|+..|..                              |
T Consensus        81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~------------------------------r  130 (178)
T COG0563          81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV------------------------------R  130 (178)
T ss_pred             EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc------------------------------c
Confidence            9999999999999999999988888889999999999999999999852                              5


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                      .++..+.+++|+..|++.+.++..+|.     +.||+.++++++++.|.+.+
T Consensus       131 ~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         131 EDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             ccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence            789999999999999999999999997     88999999999999998765

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.97  E-value=1.5e-29  Score=193.92  Aligned_cols=150  Identities=45%  Similarity=0.879  Sum_probs=135.4

Q ss_pred             EECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCceEEc
Q 025970           36 LIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILD  115 (245)
Q Consensus        36 i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~iid  115 (245)
                      |+|+|||||||+|+.|+++||+++|++++++++.+..+++.|..+.+++.+|..+|++++..++..++....+..|||+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999887667899999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCc
Q 025970          116 GFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDT  195 (245)
Q Consensus       116 g~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~  195 (245)
                      |||++..|+..|...+...+..|+.+|+|+||++.+.+|+.+                                    ++
T Consensus        81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------d~  124 (151)
T PF00406_consen   81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------DN  124 (151)
T ss_dssp             SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------GS
T ss_pred             eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------CC
Confidence            999999999999987776778999999999999999999885                                    35


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcC
Q 025970          196 AQVLKSRLEAFHKQTEPVIDYYAKKG  221 (245)
Q Consensus       196 ~~~~~~rl~~~~~~~~~l~~~~~~~~  221 (245)
                      .+.+++|++.|+++..++.++|.+.+
T Consensus       125 ~~~i~~Rl~~y~~~~~~i~~~y~~~g  150 (151)
T PF00406_consen  125 EEVIKKRLEEYRENTEPILDYYKEQG  150 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            68899999999999999999998765

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.96  E-value=3.6e-27  Score=186.88  Aligned_cols=183  Identities=37%  Similarity=0.593  Sum_probs=157.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK-PSCE  109 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~-~~~~  109 (245)
                      -++|+|+|+|||||||+|+.|++.+|+.++++++++++.+...++.++.+...+..+..+|...+...+...+.. ...+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS   82 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence            358999999999999999999999999999999999998777778888888889999889988888887776654 3445


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI  189 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~  189 (245)
                      .+||+||+|++..+...+...    ...|+.+|+|++|++++.+|+..|...                           .
T Consensus        83 ~~~i~dg~~~~~~q~~~~~~~----~~~~~~vi~l~~~~~~~~~Rl~~R~~~---------------------------~  131 (188)
T TIGR01360        83 KGFLIDGYPREVKQGEEFERR----IGPPTLVLYFDCSEDTMVKRLLKRAET---------------------------S  131 (188)
T ss_pred             CeEEEeCCCCCHHHHHHHHHc----CCCCCEEEEEECCHHHHHHHHHccccc---------------------------C
Confidence            789999999999888766532    246899999999999999999988520                           1


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      .|.+++.+.+.+|+..|++...++.++|...+.++.||++.+++++++.|...|+
T Consensus       132 ~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       132 GRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            2567788899999999999999999999877789999999999999999998875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13974 thymidylate kinase; Provisional

Probab=99.78  E-value=4.9e-18  Score=137.16  Aligned_cols=178  Identities=17%  Similarity=0.193  Sum_probs=117.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh--HHHHHHHHHcCCchHHHHHHHHHc--CCCCCHHHHHHHH--HHH-
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT--GDMLRSAVAAKTPLGIKAKEAMDK--GELVSDDLVVGII--DQA-  102 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~--~~li~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l--~~~-  102 (245)
                      ++.+|+|.|++||||||+++.|++.+.......  ...+......++++|+.+++++..  +...++.....++  ..+ 
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~   81 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA   81 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999884221100  001111112367889999999863  2333444333332  222 


Q ss_pred             ------HcCCCCCCceEE-----------cCCCCCHH--HHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970          103 ------MKKPSCEKGFIL-----------DGFPRTVV--QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA  163 (245)
Q Consensus       103 ------l~~~~~~~~~ii-----------dg~p~~~~--~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~  163 (245)
                            +...-..+.+||           +|+|+...  ....+...+. .+..|+++|+|+||++++.+|+..|.    
T Consensus        82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~-~~~~pd~~i~ld~~~~~~~~R~~~R~----  156 (212)
T PRK13974         82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIAT-QGLSPDLTFFLEISVEESIRRRKNRK----  156 (212)
T ss_pred             HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhcc----
Confidence                  111111223555           56666432  3444444332 35689999999999999999988763    


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                   ++   .++.+...|++...+...+|.+.+.++.||++++++++++.|.++|
T Consensus       157 -----------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l  204 (212)
T PRK13974        157 -----------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETL  204 (212)
T ss_pred             -----------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHH
Confidence                                         11   2445667888888888889988888999999999999999998876


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      .
T Consensus       205 ~  205 (212)
T PRK13974        205 L  205 (212)
T ss_pred             H
Confidence            4

>PRK01184 hypothetical protein; Provisional

Probab=99.76  E-value=2e-16  Score=125.00  Aligned_cols=170  Identities=20%  Similarity=0.219  Sum_probs=111.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CC-----chHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KT-----PLGIKAKEAMDKGELVSDDLVVGIIDQAMKK  105 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~-----~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~  105 (245)
                      ++|+|+|+|||||||+++ +++++|++++++++++++.+.. +.     .++.........   +....+..++...+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHHh
Confidence            489999999999999987 7789999999999999998742 22     234444333221   1123333343344433


Q ss_pred             CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970          106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG  185 (245)
Q Consensus       106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~  185 (245)
                       .....+|+||+ +...+...+.+.+    ..+..+|+++||++++.+|+..|...                        
T Consensus        78 -~~~~~vvidg~-r~~~e~~~~~~~~----~~~~~~i~v~~~~~~~~~Rl~~R~~~------------------------  127 (184)
T PRK01184         78 -KGDEVVVIDGV-RGDAEVEYFRKEF----PEDFILIAIHAPPEVRFERLKKRGRS------------------------  127 (184)
T ss_pred             -cCCCcEEEeCC-CCHHHHHHHHHhC----CcccEEEEEECCHHHHHHHHHHcCCC------------------------
Confidence             23467999998 6777777665543    23458999999999999999987410                        


Q ss_pred             CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                           ....+.+.+.+|......  .++.+.+...+  +.|+++.+++++...|.+.++
T Consensus       128 -----~d~~~~~~~~~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~  177 (184)
T PRK01184        128 -----DDPKSWEELEERDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKLLE  177 (184)
T ss_pred             -----CChhhHHHHHHHHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHH
Confidence                 001235666666654321  22444444434  456678899999999887654

>PRK03839 putative kinase; Provisional

Probab=99.75  E-value=8.5e-17  Score=126.71  Aligned_cols=151  Identities=18%  Similarity=0.292  Sum_probs=95.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|+|||||||+++.|+++++++++++|+++++.     .++.....   .+.     .....+...+.......+
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~   67 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD---EME-----IDFDKLAYFIEEEFKEKN   67 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCCh---hhh-----cCHHHHHHHHHHhccCCC
Confidence            47999999999999999999999999999999988652     11111100   000     111222222222122456


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      +|+||+...         +     ..++.+|+|+++++++.+|+..|...                             +
T Consensus        68 vIidG~~~~---------l-----~~~~~vi~L~~~~~~~~~Rl~~R~~~-----------------------------~  104 (180)
T PRK03839         68 VVLDGHLSH---------L-----LPVDYVIVLRAHPKIIKERLKERGYS-----------------------------K  104 (180)
T ss_pred             EEEEecccc---------c-----cCCCEEEEEECCHHHHHHHHHHcCCC-----------------------------H
Confidence            999997421         1     35789999999999999999877410                             0


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                      +. ..+....+   +.+  ..+.+.|.....++.||++ .+++++++.|.+.|.
T Consensus       105 ~~-~~~~~~~~---~~~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~  152 (180)
T PRK03839        105 KK-ILENVEAE---LVD--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIK  152 (180)
T ss_pred             HH-HHHHHHHH---HHH--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            00 01111111   111  1223445555678899996 699999999988775

>PRK13973 thymidylate kinase; Provisional

Probab=99.73  E-value=4.3e-16  Score=125.91  Aligned_cols=177  Identities=20%  Similarity=0.230  Sum_probs=103.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh---Ccceeeh--------HHHHHHHHHcC--CchHHHHHHHHHcCCCCCHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLAT--------GDMLRSAVAAK--TPLGIKAKEAMDKGELVSDDLVVG   97 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~--------~~li~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~   97 (245)
                      +++|+|.|++||||||+++.|++.+   |+.++.+        +..+|+.+...  ...+.....++-.+  .....+..
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~~   80 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVEE   80 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHHH
Confidence            6899999999999999999999999   8877765        44444443321  11122222111111  00112222


Q ss_pred             HHHHHHcCCCCCCceEEcCCC----------CC--HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970           98 IIDQAMKKPSCEKGFILDGFP----------RT--VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus        98 ~l~~~l~~~~~~~~~iidg~p----------~~--~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                      .+...+..   +..+|.|.|-          ..  ..+...+..... .+..||++|+|+||++++.+|+.+|...... 
T Consensus        81 ~i~~~l~~---g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~-~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~-  155 (213)
T PRK13973         81 VIRPALAR---GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAI-NGVMPDLTLILDIPAEVGLERAAKRRGSDTP-  155 (213)
T ss_pred             HHHHHHHC---CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhccCCCcc-
Confidence            33333332   2234445543          21  123333332221 2367999999999999999999988521100 


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCC-CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKD-DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                              .+.+ ...+.++++.+.|.+..    +++  .+.++.||++.++++++..|..++.
T Consensus       156 ------------------------~~~e~~~~~~~~~~~~~y~~l~----~~~--~~~~~~Ida~~~~e~V~~~I~~~i~  205 (213)
T PRK13973        156 ------------------------DRFEKEDLAFHEKRREAFLQIA----AQE--PERCVVIDATASPEAVAAEIWAAVD  205 (213)
T ss_pred             ------------------------CchhhchHHHHHHHHHHHHHHH----HhC--CCcEEEEcCCCCHHHHHHHHHHHHH
Confidence                                    0112 23455556666665533    222  2368899999999999999988764

>PRK06217 hypothetical protein; Validated

Probab=99.72  E-value=5.1e-16  Score=122.62  Aligned_cols=171  Identities=16%  Similarity=0.215  Sum_probs=106.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      +.|+|+|+|||||||+++.|++.+|++++++|++++..  .+.+.+          ...+.+.....+...+.   ...+
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~---~~~~   66 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLR---PREG   66 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHh---cCCC
Confidence            57999999999999999999999999999999887531  111111          11233333444444432   2357


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      ||+||++....  ..   .+    ..++.+|||++|.+++++|+..|..... |+       |+..++           .
T Consensus        67 ~vi~G~~~~~~--~~---~~----~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~-~~-------~~~~~~-----------~  118 (183)
T PRK06217         67 WVLSGSALGWG--DP---LE----PLFDLVVFLTIPPELRLERLRLREFQRY-GN-------RILPGG-----------D  118 (183)
T ss_pred             EEEEccHHHHH--HH---HH----hhCCEEEEEECCHHHHHHHHHcCccccc-Cc-------ccCCCC-----------C
Confidence            99999875431  11   11    3468999999999999999999964221 10       000000           0


Q ss_pred             CCCcHHHHHHHHHHHHH------hhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          192 KDDTAQVLKSRLEAFHK------QTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~------~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                      .+.....+.++...|..      .......|+.. ...++.+++..+++++++.|...|.+
T Consensus       119 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        119 MHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             HHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence            01112233344434432      22333334443 25678899999999999999998864

>PRK08356 hypothetical protein; Provisional

Probab=99.71  E-value=2.5e-16  Score=125.61  Aligned_cols=118  Identities=19%  Similarity=0.312  Sum_probs=81.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc----CC---chHHH----HHHHHHcCCCCCH----HH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA----KT---PLGIK----AKEAMDKGELVSD----DL   94 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~----~~---~~~~~----i~~~l~~~~~~~~----~~   94 (245)
                      +.++|+|+|+|||||||+|+.|+ ++|+.++++++.++.....    .+   ..+..    ...++..|..+++    .+
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~   82 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI   82 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence            34789999999999999999996 5899999998755432221    11   11111    1234444444443    45


Q ss_pred             HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           95 VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        95 ~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      +.++..+.+..   ...+++||+ ++..+...|...       ...+|++++|++++.+|+..|.
T Consensus        83 ~~~~~~~~~~~---~~~ividG~-r~~~q~~~l~~~-------~~~vi~l~~~~~~~~~Rl~~R~  136 (195)
T PRK08356         83 LIRLAVDKKRN---CKNIAIDGV-RSRGEVEAIKRM-------GGKVIYVEAKPEIRFERLRRRG  136 (195)
T ss_pred             HHHHHHHHhcc---CCeEEEcCc-CCHHHHHHHHhc-------CCEEEEEECCHHHHHHHHHhcC
Confidence            55565555532   235999999 999988876541       2479999999999999999885

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.69  E-value=9.6e-16  Score=117.54  Aligned_cols=163  Identities=20%  Similarity=0.245  Sum_probs=95.1

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL-VSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~l~~~l~~~~~~  109 (245)
                      .+.|+++|++||||||+++.||+.++++++++|.+|.+.      .+..+.++|...+. -....-...+.+.+...   
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~---   72 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLETEVLKELLEED---   72 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH------HCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence            467899999999999999999999999999999999885      34455555554221 11111222222222221   


Q ss_pred             CceEEcCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          110 KGFILDGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       110 ~~~iidg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                      ..+|-.|.  .........    +.+.    ..+|||++|.+++++|+.....                         +|
T Consensus        73 ~~ViaTGGG~v~~~enr~~----l~~~----g~vv~L~~~~e~l~~Rl~~~~~-------------------------RP  119 (172)
T COG0703          73 NAVIATGGGAVLSEENRNL----LKKR----GIVVYLDAPFETLYERLQRDRK-------------------------RP  119 (172)
T ss_pred             CeEEECCCccccCHHHHHH----HHhC----CeEEEEeCCHHHHHHHhccccC-------------------------CC
Confidence            23333332  222233332    2222    3799999999999999995432                         22


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      +.+..+. .+.+    ..   .+..-..+|.+.. .+.++++...+++...|.+.|.
T Consensus       120 ll~~~~~-~~~l----~~---L~~~R~~~Y~e~a-~~~~~~~~~~~~v~~~i~~~l~  167 (172)
T COG0703         120 LLQTEDP-REEL----EE---LLEERQPLYREVA-DFIIDTDDRSEEVVEEILEALE  167 (172)
T ss_pred             cccCCCh-HHHH----HH---HHHHHHHHHHHhC-cEEecCCCCcHHHHHHHHHHHH
Confidence            2222222 1222    22   2233334454432 3556666555888888887663

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.68  E-value=2.4e-15  Score=119.75  Aligned_cols=164  Identities=15%  Similarity=0.136  Sum_probs=107.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC------CCCHHHHH---------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE------LVSDDLVV---------   96 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~---------   96 (245)
                      ++|+|+|++||||||+++.|++.+|++++++|.+.+..+..+++.+..+.+.|..+.      .++...+.         
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            479999999999999999999999999999999999999888888888877765322      22211111         


Q ss_pred             ---------HHH----HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970           97 ---------GII----DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA  163 (245)
Q Consensus        97 ---------~~l----~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~  163 (245)
                               .++    ...+........++++ .|.....  .+       ...+|.+|+++||.+++.+|+..|.    
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~-------~~~~D~ii~V~a~~e~r~~Rl~~R~----  147 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KL-------TDLCSEIWVVDCSPEQQLQRLIKRD----  147 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--ch-------HhCCCEEEEEECCHHHHHHHHHHcC----
Confidence                     111    1122221111223333 2322211  01       1357999999999999999999884    


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                   +.+.+.+.+|+...   + +....-...+  ++|+++.+.+++...|.+.+
T Consensus       148 -----------------------------g~s~e~~~~ri~~Q---~-~~~~k~~~aD--~vI~N~g~~e~l~~qv~~~l  192 (195)
T PRK14730        148 -----------------------------GLTEEEAEARINAQ---W-PLEEKVKLAD--VVLDNSGDLEKLYQQVDQLL  192 (195)
T ss_pred             -----------------------------CCCHHHHHHHHHhC---C-CHHHHHhhCC--EEEECCCCHHHHHHHHHHHH
Confidence                                         33556677777542   2 2222222223  46788999999999998765


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      .
T Consensus       193 ~  193 (195)
T PRK14730        193 K  193 (195)
T ss_pred             h
Confidence            3

>PRK13949 shikimate kinase; Provisional

Probab=99.68  E-value=4.9e-15  Score=115.39  Aligned_cols=162  Identities=15%  Similarity=0.233  Sum_probs=96.3

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      .|+|+|+|||||||+++.|++.++++++++|.++.+...      ..+.+++. .|..........++.. +.   ...+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~---~~~~   72 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VA---EFED   72 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HH---hCCC
Confidence            689999999999999999999999999999998876432      22333332 2222222233333333 22   1235


Q ss_pred             eEE-cC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          112 FIL-DG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       112 ~ii-dg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      +|+ +|  .+........+..        .+++|||++|.+.+.+|+..+...                        +++
T Consensus        73 ~vis~Ggg~~~~~~~~~~l~~--------~~~vi~L~~~~~~~~~Ri~~~~~~------------------------RP~  120 (169)
T PRK13949         73 VVISTGGGAPCFFDNMELMNA--------SGTTVYLKVSPEVLFVRLRLAKQQ------------------------RPL  120 (169)
T ss_pred             EEEEcCCcccCCHHHHHHHHh--------CCeEEEEECCHHHHHHHHhcCCCC------------------------CCC
Confidence            666 43  4455555554432        368999999999999999854210                        111


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhh
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVL  243 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l  243 (245)
                      ..  +.+.+.+..   .+.+.+.....+|...+  ++||. +.+++++++.|.+.+
T Consensus       121 ~~--~~~~~~~~~---~i~~l~~~R~~~Y~~ad--~~id~~~~~~~e~~~~I~~~~  169 (169)
T PRK13949        121 LK--GKSDEELLD---FIIEALEKRAPFYRQAK--IIFNADKLEDESQIEQLVQRL  169 (169)
T ss_pred             CC--CCChHHHHH---HHHHHHHHHHHHHHhCC--EEEECCCCCHHHHHHHHHHhC
Confidence            11  111222322   22333344444566544  45554 458899999887753

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.67  E-value=1e-14  Score=116.44  Aligned_cols=175  Identities=25%  Similarity=0.293  Sum_probs=104.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcC-CCCCHHHHHHHH------
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-ELVSDDLVVGII------   99 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~l------   99 (245)
                      .+++|+|.|+.||||||+++.|++.+   |+.++-+    +  .+.++++|..+++++.++ ..+.+....-+.      
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----r--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~   75 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----R--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ   75 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----e--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999988   3333332    1  134688999999998886 344443322222      


Q ss_pred             --HHHHcC-CCCCCceEEcCCCCCHHHHH------------HHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970          100 --DQAMKK-PSCEKGFILDGFPRTVVQAE------------KLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus       100 --~~~l~~-~~~~~~~iidg~p~~~~~~~------------~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                        ...+.. ...+..+|.|.|-.+....+            .+.+.... +..||++++||+|+++.++|+.+|....  
T Consensus        76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~-~~~PD~ti~Ldv~~e~al~R~~~r~~~~--  152 (208)
T COG0125          76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPG-GLKPDLTLYLDVPPEVALERIRKRGELR--  152 (208)
T ss_pred             HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccC-CCCCCEEEEEeCCHHHHHHHHHhcCCcc--
Confidence              112211 11234566676644332111            11111111 4589999999999999999999986310  


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-CcEEEEeCCCChhHHHHHHHHhh
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKK-GVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~-~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                 .....+.  .  ..+.+......+..+.. ..+++||++.+++++.+.|.+++
T Consensus       153 ---------------------------~r~E~~~--~--~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l  201 (208)
T COG0125         153 ---------------------------DRFEKED--D--EFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKIL  201 (208)
T ss_pred             ---------------------------chhhhHH--H--HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHH
Confidence                                       0111101  0  11111112222222221 25899999999999999998877


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      .
T Consensus       202 ~  202 (208)
T COG0125         202 K  202 (208)
T ss_pred             H
Confidence            4

>PRK13975 thymidylate kinase; Provisional

Probab=99.67  E-value=1.1e-14  Score=116.04  Aligned_cols=173  Identities=16%  Similarity=0.184  Sum_probs=96.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH-HHH------H
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DQA------M  103 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l-~~~------l  103 (245)
                      +++|+|.|++||||||+++.|+++++..+...        ..++..|..+++++..+ ...+..+..++ ..+      +
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i   72 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEI   72 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999998532211        11234455566655443 22222111111 111      1


Q ss_pred             cCCCCCCceEEcCCCCCH-HHH------HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCC
Q 025970          104 KKPSCEKGFILDGFPRTV-VQA------EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPK  176 (245)
Q Consensus       104 ~~~~~~~~~iidg~p~~~-~~~------~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~  176 (245)
                      ........+|.|.+.... ...      ..+...+......|+++|+|++|++++.+|+..|..+               
T Consensus        73 ~~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~---------------  137 (196)
T PRK13975         73 EEDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE---------------  137 (196)
T ss_pred             HHHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc---------------
Confidence            110112467888764321 110      0011111122257899999999999999999987410               


Q ss_pred             CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          177 VHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                                     .....+.+++....|.+...  ..+|.....++.||++ .+++++++.|.+.|.
T Consensus       138 ---------------~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~  189 (196)
T PRK13975        138 ---------------IFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIK  189 (196)
T ss_pred             ---------------ccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence                           01122333333344444332  2222222357899985 899999999988764

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.65  E-value=2.6e-15  Score=119.59  Aligned_cols=163  Identities=15%  Similarity=0.147  Sum_probs=106.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHHHH---------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLVVG---------   97 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~---------   97 (245)
                      .+|+|+|++||||||+++.|++ +|++++++|.+.++.+.++++....+.+.+..+     +.+....+..         
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            4799999999999999999998 999999999999998887777777776665432     2233221111         


Q ss_pred             ---------HHHH----HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970           98 ---------IIDQ----AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus        98 ---------~l~~----~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                               .+..    .+.......-++++. |.-...         +....+|.+|++++|++++.+|+..|.     
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~---------~~~~~~D~vi~V~a~~e~~~~Rl~~R~-----  146 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFEN---------GLEKLVDRVLVVDAPPETQLERLMARD-----  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC---------CchhhCCeEEEEECCHHHHHHHHHHcC-----
Confidence                     1111    121111112334443 322211         111347999999999999999999873     


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                                  +.+.+.+..|+..+..    ..+.....+  ++|+++++++++..++...++
T Consensus       147 ----------------------------~~s~e~~~~ri~~Q~~----~~~~~~~ad--~vI~N~g~~e~l~~qv~~i~~  192 (194)
T PRK00081        147 ----------------------------GLSEEEAEAIIASQMP----REEKLARAD--DVIDNNGDLEELRKQVERLLQ  192 (194)
T ss_pred             ----------------------------CCCHHHHHHHHHHhCC----HHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence                                        3456677777765322    222222222  678888999999999988764

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.64  E-value=1.1e-14  Score=109.27  Aligned_cols=111  Identities=20%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      |+|.|.|+|||||||+++.||++||+++++++.++|+.... +-.+.. +..+-+.+-.     +...+..+.......+
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~e-f~~~AE~~p~-----iD~~iD~rq~e~a~~~   74 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEE-FSRYAEEDPE-----IDKEIDRRQKELAKEG   74 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHH-HHHHHhcCch-----hhHHHHHHHHHHHHcC
Confidence            58999999999999999999999999999999999986542 222211 1122222221     2222222222222245


Q ss_pred             ceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          111 GFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       111 ~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .+|++|....        |++.   ..+++-|+|.+|.++..+|+..|.
T Consensus        75 nvVlegrLA~--------Wi~k---~~adlkI~L~Apl~vRa~Ria~RE  112 (179)
T COG1102          75 NVVLEGRLAG--------WIVR---EYADLKIWLKAPLEVRAERIAKRE  112 (179)
T ss_pred             CeEEhhhhHH--------HHhc---cccceEEEEeCcHHHHHHHHHHhc
Confidence            6888875211        1211   357899999999999999999984

>PRK13948 shikimate kinase; Provisional

Probab=99.63  E-value=3.3e-14  Score=111.71  Aligned_cols=111  Identities=16%  Similarity=0.150  Sum_probs=69.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPS  107 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~  107 (245)
                      +++..|+|+|++||||||+++.|++.+|..++++|.++++..      |..+.+++.. |.....+....++...+.   
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~---   78 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTR---   78 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHh---
Confidence            466789999999999999999999999999999998887753      3333344432 221111222222322221   


Q ss_pred             CCCceEEc-C--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970          108 CEKGFILD-G--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG  157 (245)
Q Consensus       108 ~~~~~iid-g--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~  157 (245)
                       ..+.||. |  .+........+.    .    ...+|||++|++++.+|+..
T Consensus        79 -~~~~VIa~GgG~v~~~~n~~~l~----~----~g~vV~L~~~~e~l~~Rl~~  122 (182)
T PRK13948         79 -LDYAVISLGGGTFMHEENRRKLL----S----RGPVVVLWASPETIYERTRP  122 (182)
T ss_pred             -cCCeEEECCCcEEcCHHHHHHHH----c----CCeEEEEECCHHHHHHHhcC
Confidence             1233443 2  233333333322    1    24689999999999999953

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.63  E-value=3.3e-15  Score=126.86  Aligned_cols=169  Identities=15%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      +++|++.|+|||||||+|+.|++.+ ++.+++.|.+.+. +......+..  .+...+...-.......+...+.   .+
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~---~g   75 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQS-LFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK---SG   75 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHH-hcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH---cC
Confidence            3688999999999999999999999 8999999775433 3221111110  00000000001112222222222   34


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI  189 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~  189 (245)
                      ..+|+|+.+....+...+..++...+..+ .+|+|++|.+++.+|+.+|..+.                           
T Consensus        76 ~~vIid~~~~~~~~~~~~~~la~~~~~~~-~~v~l~~~~e~~~~R~~~R~~~~---------------------------  127 (300)
T PHA02530         76 KSVIISDTNLNPERRRKWKELAKELGAEF-EEKVFDVPVEELVKRNRKRGERA---------------------------  127 (300)
T ss_pred             CeEEEeCCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHccCcCC---------------------------
Confidence            57999999999888888777666665444 46999999999999999985211                           


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhH
Q 025970          190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKE  234 (245)
Q Consensus       190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~  234 (245)
                       -+.+......++++.|...+.++...+......+.+|.+.++.+
T Consensus       128 -~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        128 -VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             -CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence             12223334448888888888888766665456777787776654

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.63  E-value=3.3e-14  Score=110.99  Aligned_cols=110  Identities=16%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      ..|+|+|++||||||+++.|++.+|+++++.|.++....      +..+.+++....   .......-...+.... ...
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~g---~~~~~~~e~~~~~~~~-~~~   72 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVEREG---WAGFRARESAALEAVT-APS   72 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHHC---HHHHHHHHHHHHHHhc-CCC
Confidence            368899999999999999999999999999998876642      112222222111   1222121112221111 123


Q ss_pred             eEE-cC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          112 FIL-DG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       112 ~ii-dg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .|+ .|  ++........+    .    ..+++|+|++|++++.+|+..|.
T Consensus        73 ~vi~~ggg~vl~~~~~~~l----~----~~~~~v~l~~~~~~~~~Rl~~r~  115 (171)
T PRK03731         73 TVIATGGGIILTEENRHFM----R----NNGIVIYLCAPVSVLANRLEANP  115 (171)
T ss_pred             eEEECCCCccCCHHHHHHH----H----hCCEEEEEECCHHHHHHHHcccc
Confidence            344 33  23333333322    1    23579999999999999998863

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.63  E-value=1.2e-14  Score=116.29  Aligned_cols=164  Identities=16%  Similarity=0.166  Sum_probs=106.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----HHH--------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLV-----VGI--------   98 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~--------   98 (245)
                      ++|.|+|++||||||+++.|++ +|++++++|.+.++.+.++++....+.+.+..+...++..+     ..+        
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            3789999999999999999987 89999999999999998888877777777765433322111     111        


Q ss_pred             ----------H----HHHHcCC-CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970           99 ----------I----DQAMKKP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA  163 (245)
Q Consensus        99 ----------l----~~~l~~~-~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~  163 (245)
                                +    ...+... ..+..+++-..|.-...         +....+|.+|++++|+++.++|+..|+    
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~---------g~~~~~D~vi~V~a~~e~ri~Rl~~R~----  147 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK---------GLDRKMDLVVVVDVDVEERVRRLVEKR----  147 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEc---------CccccCCeEEEEECCHHHHHHHHHHcC----
Confidence                      1    1111100 01112222222221110         111357999999999999999999873    


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                   +.+.+.+.+|+..+...    .......+  ++|+++.+++++..++...+
T Consensus       148 -----------------------------g~s~e~~~~ri~~Q~~~----~~k~~~ad--~vI~N~g~~e~l~~~v~~~~  192 (200)
T PRK14734        148 -----------------------------GLDEDDARRRIAAQIPD----DVRLKAAD--IVVDNNGTREQLLAQVDGLI  192 (200)
T ss_pred             -----------------------------CCCHHHHHHHHHhcCCH----HHHHHhCC--EEEECcCCHHHHHHHHHHHH
Confidence                                         34567777777764433    22222222  57899999999998888765


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      +
T Consensus       193 ~  193 (200)
T PRK14734        193 A  193 (200)
T ss_pred             H
Confidence            3

>PLN02924 thymidylate kinase

Probab=99.62  E-value=1.7e-14  Score=116.74  Aligned_cols=174  Identities=17%  Similarity=0.135  Sum_probs=103.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH-HHHHHcC-
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI-IDQAMKK-  105 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-l~~~l~~-  105 (245)
                      ++++++|+|.|++||||||+++.|++.+....+.+ .++++ ...++..|+.+++++..+..+.+....-+ ...+... 
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~   90 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR   90 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999996554443 22222 12357788888888876544444322211 1111111 


Q ss_pred             ------CCCCCceEEcCCCCCHH-HH------HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccC
Q 025970          106 ------PSCEKGFILDGFPRTVV-QA------EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKF  172 (245)
Q Consensus       106 ------~~~~~~~iidg~p~~~~-~~------~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~  172 (245)
                            +..+..+|.|.|..+.. ..      ..+...+......||++|+|++|++++.+|...+.      +      
T Consensus        91 ~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~------~------  158 (220)
T PLN02924         91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG------E------  158 (220)
T ss_pred             HHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc------c------
Confidence                  12234577887755321 11      01111222233679999999999999999954221      0      


Q ss_pred             CCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          173 APPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       173 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                        + -+.. ..+.++ +.|.+.        .+ ..+++||++.+++++++.|.+.|.
T Consensus       159 ------------------~-~E~~-~~~~rv~~~Y~~l--------a~-~~~~vIDa~~sieeV~~~I~~~I~  202 (220)
T PLN02924        159 ------------------R-YEKL-EFQKKVAKRFQTL--------RD-SSWKIIDASQSIEEVEKKIREVVL  202 (220)
T ss_pred             ------------------c-cccH-HHHHHHHHHHHHH--------hh-cCEEEECCCCCHHHHHHHHHHHHH
Confidence                              0 0111 222222 222221        11 357889999999999999988764

>PLN02422 dephospho-CoA kinase

Probab=99.60  E-value=4.2e-14  Score=114.73  Aligned_cols=163  Identities=18%  Similarity=0.120  Sum_probs=104.7

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH------------
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-----GELVSDDLV------------   95 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~------------   95 (245)
                      +|+|+|++||||||+++.|+ ++|++++++|.+.++.+.++++....+.+.|..     .+.++...+            
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~   81 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ   81 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            69999999999999999998 689999999999999998877666666655532     122322221            


Q ss_pred             ------HHHHHHHHc----CC-CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970           96 ------VGIIDQAMK----KP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus        96 ------~~~l~~~l~----~~-~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                            ...+...+.    .. .....+++=..|.-.+.         ++...+|.+|+++||+++.++|+..|+     
T Consensus        82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~---------~~~~~~D~vI~V~a~~e~ri~RL~~R~-----  147 (232)
T PLN02422         82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFET---------KMDKWTKPVVVVWVDPETQLERLMARD-----  147 (232)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhc---------chhhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence                  112111111    00 01123333233433221         111357999999999999999999984     


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                                  +.+.+.+.+|++..    .+........+  +.|+++++.+++..++.+.++
T Consensus       148 ----------------------------g~s~eea~~Ri~~Q----~~~eek~~~AD--~VI~N~gs~e~L~~qv~~ll~  193 (232)
T PLN02422        148 ----------------------------GLSEEQARNRINAQ----MPLDWKRSKAD--IVIDNSGSLEDLKQQFQKVLE  193 (232)
T ss_pred             ----------------------------CCCHHHHHHHHHHc----CChhHHHhhCC--EEEECCCCHHHHHHHHHHHHH
Confidence                                        34567777777442    22222222223  578888999999988887654

>PRK04040 adenylate kinase; Provisional

Probab=99.60  E-value=1.5e-13  Score=108.71  Aligned_cols=176  Identities=18%  Similarity=0.092  Sum_probs=102.1

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCc--hHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTP--LGIKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      +++|+|+|+|||||||+++.|++++  ++.+++.+++++.......-  ....+.    .-..-...-+..+....+...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r----~l~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMR----KLPPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHh----hCChhhhHHHHHHHHHHHHHh
Confidence            6799999999999999999999999  89999999998776543211  111111    111001111222333344333


Q ss_pred             CCCCceEEcCCCCCHHHHH----HHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCC
Q 025970          107 SCEKGFILDGFPRTVVQAE----KLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDD  182 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~~----~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~  182 (245)
                      .....+|+||+.......-    .-.+.+.  ...|+.+|+|++|++++.+|......                      
T Consensus        78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~d~~----------------------  133 (188)
T PRK04040         78 AGEGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLRDET----------------------  133 (188)
T ss_pred             hcCCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhcccc----------------------
Confidence            3334588998642111100    0011121  15789999999999999888774200                      


Q ss_pred             CCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh---cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          183 VTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK---KGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~---~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                            -.|..++.+.++.+++....    ...+|..   .-.++.++.+..+++.++.|.++|.
T Consensus       134 ------R~R~~es~e~I~~~~~~a~~----~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~  188 (188)
T PRK04040        134 ------RRRDVETEEDIEEHQEMNRA----AAMAYAVLTGATVKIVENREGLLEEAAEEIVEVLR  188 (188)
T ss_pred             ------cCCCCCCHHHHHHHHHHHHH----HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence                  01345566677666554322    2233332   1234445545559999999988763

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.60  E-value=2.6e-14  Score=113.63  Aligned_cols=165  Identities=19%  Similarity=0.161  Sum_probs=105.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHH----------------
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDL----------------   94 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~----------------   94 (245)
                      .++|.|+|.+||||||+++.|++ +|++++++|+++|+...++++....+...+.....-++..                
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            46899999999999999999998 9999999999999999988777776666554322111111                


Q ss_pred             -------HHHHHHHHHcC-CC-CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970           95 -------VVGIIDQAMKK-PS-CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus        95 -------~~~~l~~~l~~-~~-~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                             ...++...+.. .. ...++++-..|.       |.+..  ....++.+|+++||+++.++|+.+|.      
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eipl-------L~e~~--~~~~~d~Vi~V~a~~e~r~eRl~~R~------  145 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIPL-------LFEAG--GEKYFDKVIVVYAPPEIRLERLMKRD------  145 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEchH-------HHhcc--ccccCCEEEEEECCHHHHHHHHHhcC------
Confidence                   11111111100 00 011133322321       11110  01237899999999999999999984      


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                                 ..+.+....++........    .+...+  ++++++.+++++.++|.+.++
T Consensus       146 ---------------------------~~~~e~~~~~~~~Q~~~~e----k~~~ad--~vi~n~~~i~~l~~~i~~~~~  191 (201)
T COG0237         146 ---------------------------GLDEEDAEARLASQRDLEE----KLALAD--VVIDNDGSIENLLEQIEKLLK  191 (201)
T ss_pred             ---------------------------CCCHHHHHHHHHhcCCHHH----HHhhcC--ChhhcCCCHHHHHHHHHHHHH
Confidence                                       4556666666665333332    233333  568899999999999887654

>PRK13947 shikimate kinase; Provisional

Probab=99.59  E-value=5.6e-14  Score=109.63  Aligned_cols=109  Identities=18%  Similarity=0.289  Sum_probs=65.3

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      .|+|+|+|||||||+++.||+.+|+++++.|.+++...      |..+.+++.. |..........++. .+..   ...
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~------g~~~~~~~~~~ge~~~~~~e~~~~~-~l~~---~~~   72 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT------GMTVAEIFEKDGEVRFRSEEKLLVK-KLAR---LKN   72 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc------CCcHHHHHHHhChHHHHHHHHHHHH-HHhh---cCC
Confidence            58999999999999999999999999999998876642      2222222222 21111111111222 2211   123


Q ss_pred             eEEc-C--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          112 FILD-G--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       112 ~iid-g--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .|+. |  .+........    +.+.    +.+|||+++++.+.+|+..|.
T Consensus        73 ~vi~~g~g~vl~~~~~~~----l~~~----~~vv~L~~~~~~l~~Rl~~r~  115 (171)
T PRK13947         73 LVIATGGGVVLNPENVVQ----LRKN----GVVICLKARPEVILRRVGKKK  115 (171)
T ss_pred             eEEECCCCCcCCHHHHHH----HHhC----CEEEEEECCHHHHHHHhcCCC
Confidence            3332 2  2233333222    2222    479999999999999998764

>PRK00625 shikimate kinase; Provisional

Probab=99.59  E-value=6.2e-14  Score=109.36  Aligned_cols=117  Identities=14%  Similarity=0.105  Sum_probs=69.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|+|+|||||||+++.|++++|++++++|+++++.....  ....+.+.+...+   ...+...-...+........
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l~~~~~   75 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSLPVIPS   75 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHhccCCe
Confidence            479999999999999999999999999999999998754321  1112333333211   11222222122222222333


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      +|.+|...... ...+. .+.    ....+|+|++|.+++.+|+..|.
T Consensus        76 VIs~GGg~~~~-~e~~~-~l~----~~~~Vv~L~~~~e~l~~Rl~~R~  117 (173)
T PRK00625         76 IVALGGGTLMI-EPSYA-HIR----NRGLLVLLSLPIATIYQRLQKRG  117 (173)
T ss_pred             EEECCCCccCC-HHHHH-HHh----cCCEEEEEECCHHHHHHHHhcCC
Confidence            44444222111 12222 221    22579999999999999999874

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.59  E-value=5.3e-14  Score=106.98  Aligned_cols=154  Identities=18%  Similarity=0.306  Sum_probs=95.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|.||+||||+|+.|+ ++|+.+++..+++.+.     .+.....+ ......++.+.+...+...+    ...+
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-----~~~~~~de-~r~s~~vD~d~~~~~le~~~----~~~~   69 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-----GLYTEYDE-LRKSVIVDVDKLRKRLEELL----REGS   69 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-----CCeeccCC-ccceEEeeHHHHHHHHHHHh----ccCC
Confidence            689999999999999999999 9999999998876652     11110000 00011223333444444333    2356


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      .|+|++..         +++    ..||++|.|.++++.+.+|+..|...++                            
T Consensus        70 ~Ivd~H~~---------hl~----~~~dlVvVLR~~p~~L~~RLk~RGy~~e----------------------------  108 (180)
T COG1936          70 GIVDSHLS---------HLL----PDCDLVVVLRADPEVLYERLKGRGYSEE----------------------------  108 (180)
T ss_pred             eEeechhh---------hcC----CCCCEEEEEcCCHHHHHHHHHHcCCCHH----------------------------
Confidence            88988632         121    2489999999999999999999964221                            


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l~  244 (245)
                        --.+.+++.+-.  -......+++   ..++.||. +.+++++.+.|.+++.
T Consensus       109 --KI~ENveAEi~~--vi~~EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~  155 (180)
T COG1936         109 --KILENVEAEILD--VILIEAVERF---EAVIEVDTTNRSPEEVAEEIIDIIG  155 (180)
T ss_pred             --HHHHHHHHHHHH--HHHHHHHHhc---CceEEEECCCCCHHHHHHHHHHHHc
Confidence              011222222111  1111122222   35777876 7999999999998875

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.59  E-value=3.5e-14  Score=113.89  Aligned_cols=175  Identities=19%  Similarity=0.165  Sum_probs=96.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCc---ceeehHHHHHHHHHcCCchHHHHHHHHHc--CCCCCHHHHHHHHHHH--
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCL---CHLATGDMLRSAVAAKTPLGIKAKEAMDK--GELVSDDLVVGIIDQA--  102 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~---~~i~~~~li~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~l~~~--  102 (245)
                      ++++|+|.|++||||||+++.|++.++.   .++..     .. ..++..+..+...+..  ....+.......+..+  
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT-----RE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe-----eC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999998732   22211     00 1134456666666653  1222211111111111  


Q ss_pred             -----HcC-CCCCCceEEcCCCCCH------------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970          103 -----MKK-PSCEKGFILDGFPRTV------------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus       103 -----l~~-~~~~~~~iidg~p~~~------------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                           +.. ...+..+|+|.++.+.            .....+...+.. ...||++|+|++|++++.+|+..|....  
T Consensus        76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~pd~~i~l~~~~~~~~~Rl~~R~~~~--  152 (205)
T PRK00698         76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALG-GFRPDLTLYLDVPPEVGLARIRARGELD--  152 (205)
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhC-CCCCCEEEEEeCCHHHHHHHHHhcCCcc--
Confidence                 111 1223467788554332            112222222221 2569999999999999999999985100  


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                                +.+.....+..++..++.   .+.+.  ....++.||++.+++++++.|.+.|.
T Consensus       153 --------------------------~~~~~~~~~~~~~~~~y~---~~~~~--~~~~~~~Id~~~~~e~v~~~i~~~i~  201 (205)
T PRK00698        153 --------------------------RIEQEGLDFFERVREGYL---ELAEK--EPERIVVIDASQSLEEVHEDILAVIK  201 (205)
T ss_pred             --------------------------hhhhhhHHHHHHHHHHHH---HHHHh--CCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence                                      001111122333332211   11111  12357889999999999999988764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.58  E-value=7.3e-14  Score=109.03  Aligned_cols=115  Identities=17%  Similarity=0.189  Sum_probs=67.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      +.++.|+|+|+|||||||+++.|++.+|+.+++.|.+++....  .........   .|...........+......   
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~~---~g~~~~~~~~~~~~~~l~~~---   73 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSIPEIFEE---EGEAAFRELEEEVLAELLAR---   73 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCHHHHHHH---HCHHHHHHHHHHHHHHHHhc---
Confidence            4567999999999999999999999999999999988765432  222221111   11110011122222222221   


Q ss_pred             CCceEEcCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          109 EKGFILDGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       109 ~~~~iidg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ...+|..|.  ........    .+.    ....+|||++|.+.+.+|+..+.
T Consensus        74 ~~~vi~~g~~~~~~~~~r~----~l~----~~~~~v~l~~~~~~~~~R~~~~~  118 (175)
T PRK00131         74 HNLVISTGGGAVLREENRA----LLR----ERGTVVYLDASFEELLRRLRRDR  118 (175)
T ss_pred             CCCEEEeCCCEeecHHHHH----HHH----hCCEEEEEECCHHHHHHHhcCCC
Confidence            123444332  11112222    221    12479999999999999998764

>PRK08233 hypothetical protein; Provisional

Probab=99.58  E-value=2.3e-14  Score=112.72  Aligned_cols=169  Identities=15%  Similarity=0.166  Sum_probs=92.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCc-ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCL-CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS-  107 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~-~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~-  107 (245)
                      ++++|+|.|+|||||||+|+.|++.++. .++..|.. +..     .....+...+..+... +......+...+.... 
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~   74 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFD-----NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIA   74 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE-Ecc-----cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence            4689999999999999999999999963 33333222 110     0011122222222222 1112222222222111 


Q ss_pred             -CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          108 -CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       108 -~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                       .+..+|+..+|....... +.       ..+|.+|+|++|.+++++|...|...                         
T Consensus        75 ~~~~~~vivd~~~~~~~~~-~~-------~~~d~~i~l~~~~~~~~~R~~~R~~~-------------------------  121 (182)
T PRK08233         75 KSNVDYIIVDYPFAYLNSE-MR-------QFIDVTIFIDTPLDIAMARRILRDFK-------------------------  121 (182)
T ss_pred             CCCceEEEEeeehhhccHH-HH-------HHcCEEEEEcCCHHHHHHHHHHHHhh-------------------------
Confidence             122455544454322211 11       24689999999999999998877420                         


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHH-HHHHHh--cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPV-IDYYAK--KGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l-~~~~~~--~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                            +.+.+.+..++..|.....+. .+++..  ....+.||++.+++++++.|.+.|.
T Consensus       122 ------~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~  176 (182)
T PRK08233        122 ------EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELY  176 (182)
T ss_pred             ------hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence                  111123445566665544332 222222  1235779999999999999998774

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.58  E-value=6e-14  Score=103.78  Aligned_cols=159  Identities=19%  Similarity=0.307  Sum_probs=106.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      ..|.|+|+|.||+||||+|++||+.+|+.+|.+++++++.     .+.....+. -....++++.+.+.+...+..    
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn-----~l~~gyDE~-y~c~i~DEdkv~D~Le~~m~~----   75 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-----NLYEGYDEE-YKCHILDEDKVLDELEPLMIE----   75 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh-----cchhccccc-ccCccccHHHHHHHHHHHHhc----
Confidence            4668999999999999999999999999999999998762     111110000 012355677788888777654    


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI  189 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~  189 (245)
                      .|.|+|-+....-..           -.+|++|+|.||.+++.+|+..|..+..                          
T Consensus        76 Gg~IVDyHgCd~Fpe-----------rwfdlVvVLr~~~s~LY~RL~sRgY~e~--------------------------  118 (176)
T KOG3347|consen   76 GGNIVDYHGCDFFPE-----------RWFDLVVVLRTPNSVLYDRLKSRGYSEK--------------------------  118 (176)
T ss_pred             CCcEEeecccCccch-----------hheeEEEEEecCchHHHHHHHHcCCCHH--------------------------
Confidence            578998765543111           2468999999999999999999864210                          


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                       ...   +.+  ..+.|.-......+.|+. ++++.+.++.. +++...|..++
T Consensus       119 -Ki~---eNi--ecEIfgv~~eea~eSy~~-~iV~eL~s~~~-Eem~~ni~ri~  164 (176)
T KOG3347|consen  119 -KIK---ENI--ECEIFGVVLEEARESYSP-KIVVELQSETK-EEMESNISRIL  164 (176)
T ss_pred             -HHh---hhc--chHHHHHHHHHHHHHcCC-cceeecCcCCH-HHHHHHHHHHH
Confidence             000   111  123333344555666654 37777877666 88888776654

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.58  E-value=3.6e-14  Score=114.28  Aligned_cols=166  Identities=13%  Similarity=0.141  Sum_probs=105.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc--------CC-CCCHHHHH----
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK--------GE-LVSDDLVV----   96 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~--------~~-~~~~~~~~----   96 (245)
                      .+++|.|+|++||||||+++.|++ +|++++++|.+.+....++......+...+..        |. .+....+.    
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            467899999999999999999986 89999999999988776655443444433321        11 12211111    


Q ss_pred             ------------------HHHHHHHcCC-CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970           97 ------------------GIIDQAMKKP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG  157 (245)
Q Consensus        97 ------------------~~l~~~l~~~-~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~  157 (245)
                                        ..+...+... ..+..+++-+.|.-...         .....+|.+|++++|++++.+|+..
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~---------~~~~~~d~ii~V~a~~e~~~~Rl~~  153 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES---------GGDAGLDFIVVVAADTELRLERAVQ  153 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec---------CchhcCCeEEEEECCHHHHHHHHHH
Confidence                              1111111111 11223444334432211         1113569999999999999999999


Q ss_pred             CcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHH
Q 025970          158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTV  237 (245)
Q Consensus       158 r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~  237 (245)
                      |.                                 ..+.+.+.+|+..+......+.    ..  -+.|+++.+++++..
T Consensus       154 R~---------------------------------~~s~e~~~~Ri~~q~~~~~~~~----~a--d~vI~N~g~~e~l~~  194 (208)
T PRK14731        154 RG---------------------------------MGSREEIRRRIAAQWPQEKLIE----RA--DYVIYNNGTLDELKA  194 (208)
T ss_pred             cC---------------------------------CCCHHHHHHHHHHcCChHHHHH----hC--CEEEECCCCHHHHHH
Confidence            84                                 3366788888877555444332    21  256788999999999


Q ss_pred             HHHHhhc
Q 025970          238 EVQKVLS  244 (245)
Q Consensus       238 ~i~~~l~  244 (245)
                      +|...++
T Consensus       195 ~i~~~~~  201 (208)
T PRK14731        195 QTEQLYQ  201 (208)
T ss_pred             HHHHHHH
Confidence            9987764

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.58  E-value=2.2e-13  Score=108.71  Aligned_cols=167  Identities=13%  Similarity=0.108  Sum_probs=103.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc----CCCCCHHH----------
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK----GELVSDDL----------   94 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~----~~~~~~~~----------   94 (245)
                      -.|..|.|+|++||||||+++.|++.+|++++++|.+.++.+.+ ......+.+.+..    .+.++...          
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~   82 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE   82 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence            34678999999999999999999999999999999999888764 3333333333322    11222211          


Q ss_pred             --------HHHHH----HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccC
Q 025970           95 --------VVGII----DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHP  162 (245)
Q Consensus        95 --------~~~~l----~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~  162 (245)
                              +...+    ...+... ....+++| .|.-.+....       ....+|.+|++.||+++.++|+..|.   
T Consensus        83 ~~~~Le~i~HP~V~~~~~~~~~~~-~~~~vv~e-ipLL~E~~~~-------~~~~~D~vi~V~a~~e~ri~Rl~~Rd---  150 (204)
T PRK14733         83 AKKWLEDYLHPVINKEIKKQVKES-DTVMTIVD-IPLLGPYNFR-------HYDYLKKVIVIKADLETRIRRLMERD---  150 (204)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhc-CCCeEEEE-echhhhccCc-------hhhhCCEEEEEECCHHHHHHHHHHcC---
Confidence                    11111    1222211 11223344 2332211000       01246899999999999999999874   


Q ss_pred             CCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHH
Q 025970          163 ASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK-PPKEVTVEVQK  241 (245)
Q Consensus       163 ~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~-~~e~v~~~i~~  241 (245)
                                                    +.+.+.+.+|++..    .+..+.....+  ++|++++ +.+++..+|.+
T Consensus       151 ------------------------------~~s~~~a~~ri~~Q----~~~eek~~~aD--~VI~N~g~~~~~l~~~~~~  194 (204)
T PRK14733        151 ------------------------------GKNRQQAVAFINLQ----ISDKEREKIAD--FVIDNTELTDQELESKLIT  194 (204)
T ss_pred             ------------------------------CCCHHHHHHHHHhC----CCHHHHHHhCC--EEEECcCCCHHHHHHHHHH
Confidence                                          34567777777552    22333333333  5677888 99999999987


Q ss_pred             hhc
Q 025970          242 VLS  244 (245)
Q Consensus       242 ~l~  244 (245)
                      .++
T Consensus       195 ~~~  197 (204)
T PRK14733        195 TIN  197 (204)
T ss_pred             HHH
Confidence            764

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.57  E-value=5.3e-13  Score=106.27  Aligned_cols=174  Identities=20%  Similarity=0.225  Sum_probs=96.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCC--CCCHHHH-H-------HH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE--LVSDDLV-V-------GI   98 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~-~-------~~   98 (245)
                      ++|+|.|++||||||+++.|++.+   |..++....      ..++..+..++.++....  ....... .       ..
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            579999999999999999999998   555444321      112234555555554331  1111110 0       01


Q ss_pred             HHHHHcC-CCCCCceEEcCCCCCH------------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970           99 IDQAMKK-PSCEKGFILDGFPRTV------------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus        99 l~~~l~~-~~~~~~~iidg~p~~~------------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                      +...+.. ...+..+|+|.++...            .....+.... .....|+.+|+|++|++++.+|+..|....   
T Consensus        75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~---  150 (200)
T cd01672          75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLA-TGGLKPDLTILLDIDPEVGLARIEARGRDD---  150 (200)
T ss_pred             HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---
Confidence            1111111 1223467778654332            1222222222 223578999999999999999999885210   


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                                               ........+..++...   ...+...+  ...++.||++.+++++++.|.+.|.+
T Consensus       151 -------------------------~~~~~~~~~~~~~~~~---y~~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~~  200 (200)
T cd01672         151 -------------------------RDEQEGLEFHERVREG---YLELAAQE--PERIIVIDASQPLEEVLAEILKAILE  200 (200)
T ss_pred             -------------------------hhhhhhHHHHHHHHHH---HHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHhC
Confidence                                     0001112222222221   11111111  13578999999999999999988753

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR00152 dephospho-CoA kinase

Probab=99.57  E-value=3.1e-14  Score=112.87  Aligned_cols=160  Identities=16%  Similarity=0.216  Sum_probs=102.3

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHHH-----------
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-----GELVSDDLVV-----------   96 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~-----------   96 (245)
                      +|+|+|.+||||||+++.|++..|++++++|.+.++.+..+.+....+.+.+..     .+.+....+.           
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999999877999999999999988877666666555431     2222211111           


Q ss_pred             -----------HHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970           97 -----------GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus        97 -----------~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                                 ..+...+........+|+-+.|.....  .+       ...+|.+|++++|.+++.+|+..|.      
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~--~~-------~~~~D~vv~V~~~~~~~~~Rl~~R~------  145 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN--KL-------RSLCDRVIVVDVSPQLQLERLMQRD------  145 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC--Cc-------HHhCCEEEEEECCHHHHHHHHHHcC------
Confidence                       111222222211112444333332211  11       1346899999999999999999884      


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHH
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQ  240 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~  240 (245)
                                                 +.+.+.+.+|+....    +........+  ++|+++.+++++..+|.
T Consensus       146 ---------------------------~~s~~~~~~r~~~q~----~~~~~~~~ad--~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       146 ---------------------------NLTEEEVQKRLASQM----DIEERLARAD--DVIDNSATLADLVKQLE  187 (188)
T ss_pred             ---------------------------CCCHHHHHHHHHhcC----CHHHHHHhCC--EEEECCCCHHHHHHHHh
Confidence                                       445677777776642    2222222222  56788999999988875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PLN02199 shikimate kinase

Probab=99.57  E-value=3.3e-13  Score=112.09  Aligned_cols=122  Identities=15%  Similarity=0.189  Sum_probs=74.5

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHH
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLV   95 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~   95 (245)
                      +.+.+..+. .-.++..|+|+|.+||||||+++.|++.+|++++++|.++++...     |..+.+++.. |.....+..
T Consensus        89 Lk~~a~~i~-~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E  162 (303)
T PLN02199         89 LKRKAEEVK-PYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKE  162 (303)
T ss_pred             HHHHHHHHH-HHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHH
Confidence            444554444 233466899999999999999999999999999999999988532     2233333332 322112222


Q ss_pred             HHHHHHHHcCCCCCCceEE-cCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970           96 VGIIDQAMKKPSCEKGFIL-DGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG  157 (245)
Q Consensus        96 ~~~l~~~l~~~~~~~~~ii-dg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~  157 (245)
                      ...+..    .....+.|| .|.  +.....+.    .+. .    ..+|||++|.+++.+|+..
T Consensus       163 ~e~L~~----L~~~~~~VIStGGG~V~~~~n~~----~L~-~----G~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        163 TDALKK----LSSRYQVVVSTGGGAVIRPINWK----YMH-K----GISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             HHHHHH----HHhcCCEEEECCCcccCCHHHHH----HHh-C----CeEEEEECCHHHHHHHHhh
Confidence            223332    221223344 332  22222222    221 1    4799999999999999985

>PRK13946 shikimate kinase; Provisional

Probab=99.57  E-value=1.3e-13  Score=108.88  Aligned_cols=167  Identities=20%  Similarity=0.217  Sum_probs=95.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS  107 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~  107 (245)
                      +..++.|+|+|++||||||+++.|++.+|++++++|.++....  +......+..   .|..........++...+..  
T Consensus         7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~--   79 (184)
T PRK13946          7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG--   79 (184)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc--
Confidence            3456789999999999999999999999999999998776543  2222221111   11111111222233332211  


Q ss_pred             CCCceEEcCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970          108 CEKGFILDGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG  185 (245)
Q Consensus       108 ~~~~~iidg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~  185 (245)
                       ...+|.+|.  .........+.        ...++|+|++|++++.+|+..|...+                       
T Consensus        80 -~~~Vi~~ggg~~~~~~~r~~l~--------~~~~~v~L~a~~e~~~~Rl~~r~~rp-----------------------  127 (184)
T PRK13946         80 -GPLVLATGGGAFMNEETRAAIA--------EKGISVWLKADLDVLWERVSRRDTRP-----------------------  127 (184)
T ss_pred             -CCeEEECCCCCcCCHHHHHHHH--------cCCEEEEEECCHHHHHHHhcCCCCCC-----------------------
Confidence             223444443  22333333222        12578999999999999999874211                       


Q ss_pred             CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                        +.. ..+..+.++...       .....+|...+ +....++.+++++++.|.+.++
T Consensus       128 --~~~-~~~~~~~i~~~~-------~~R~~~y~~~d-l~i~~~~~~~~~~~~~i~~~i~  175 (184)
T PRK13946        128 --LLR-TADPKETLARLM-------EERYPVYAEAD-LTVASRDVPKEVMADEVIEALA  175 (184)
T ss_pred             --cCC-CCChHHHHHHHH-------HHHHHHHHhCC-EEEECCCCCHHHHHHHHHHHHH
Confidence              111 111222222222       22223454433 4455678999999999888764

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.57  E-value=2.7e-13  Score=108.03  Aligned_cols=121  Identities=23%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCc---ceeehHHHHHHHHHcCCchHHHHHHHHHcCC--CCCHHHHH--------H
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCL---CHLATGDMLRSAVAAKTPLGIKAKEAMDKGE--LVSDDLVV--------G   97 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~---~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~--------~   97 (245)
                      +++|+|.|++||||||+++.|++.++.   .++-..      ...+++.+..+++++..+.  ...+....        .
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~   76 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR------EPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE   76 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999843   222110      0123456666666544322  22211110        1


Q ss_pred             HHHHHHcC-CCCCCceEEcCCCCCH------------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           98 IIDQAMKK-PSCEKGFILDGFPRTV------------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        98 ~l~~~l~~-~~~~~~~iidg~p~~~------------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .+...+.. ...+..+|+|.+..+.            .....+...+..  ..|+++|+|++|++++++|+..|.
T Consensus        77 ~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~--~~~d~~i~l~~~~~~~~~R~~~r~  149 (195)
T TIGR00041        77 HLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALG--DMPDLTIYLDIDPEVALERLRKRG  149 (195)
T ss_pred             HHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhC--CCCCEEEEEeCCHHHHHHHHHhcC
Confidence            11111111 1122346677542221            111222211110  148999999999999999999885

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.57  E-value=4.8e-13  Score=104.15  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=71.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS-CEK  110 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~-~~~  110 (245)
                      |+|+|.|++||||||+++.|++.+|+++++.+++++............+........     .+...+...+.... ...
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~   75 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALKEK   75 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhcCC
Confidence            579999999999999999999999999999988877654421111111111111111     11222222222221 235


Q ss_pred             ceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          111 GFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       111 ~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ++|++|.....        .+   ...++++|+|++|++++.+|+..|.
T Consensus        76 ~~Vi~g~~~~~--------~~---~~~~d~~v~v~a~~~~r~~R~~~R~  113 (171)
T TIGR02173        76 NVVLESRLAGW--------IV---REYADVKIWLKAPLEVRARRIAKRE  113 (171)
T ss_pred             CEEEEecccce--------ee---cCCcCEEEEEECCHHHHHHHHHHcc
Confidence            78888853221        11   1346799999999999999999874

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.57  E-value=1.2e-13  Score=107.92  Aligned_cols=162  Identities=20%  Similarity=0.336  Sum_probs=89.9

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      ...|+|+|++||||||+++.|++.+++.++++|..+.....  ...+    ..+.. |...-...-..++.. +..   .
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~----~~~~~~g~~~fr~~e~~~l~~-l~~---~   73 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIG----WVFDVEGEEGFRDREEKVINE-LTE---K   73 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHh----HHHHHhCHHHHHHHHHHHHHH-HHh---C
Confidence            45799999999999999999999999999999887665432  1111    11111 110000111122222 211   2


Q ss_pred             CceEEc-CC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          110 KGFILD-GF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       110 ~~~iid-g~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                      ..+++. |.  +........|.        ..+.+|||++|.+++.+|+..+...|                        
T Consensus        74 ~~~vi~~ggg~v~~~~~~~~l~--------~~~~vv~L~~~~e~~~~Ri~~~~~rP------------------------  121 (172)
T PRK05057         74 QGIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDKKRP------------------------  121 (172)
T ss_pred             CCEEEEcCCchhCCHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCCCCC------------------------
Confidence            234443 22  22222223222        22589999999999999998654211                        


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeC-CCChhHHHHHHHHhhcC
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK-KGVLAQLHA-EKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~-~~~~~~id~-~~~~e~v~~~i~~~l~~  245 (245)
                       +... ....+    .+........+   +|.. .+  ++||+ +.+++++.+.|.+.+.+
T Consensus       122 -~~~~-~~~~~----~~~~l~~~R~~---~Y~~~Ad--~~idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        122 -LLQV-DDPRE----VLEALANERNP---LYEEIAD--VTIRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             -CCCC-CCHHH----HHHHHHHHHHH---HHHhhCC--EEEECCCCCHHHHHHHHHHHHhh
Confidence             1111 11111    13333333333   4443 23  44565 58999999999887753

>PRK08118 topology modulation protein; Reviewed

Probab=99.56  E-value=1e-13  Score=107.81  Aligned_cols=100  Identities=22%  Similarity=0.301  Sum_probs=72.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      +.|+|+|+|||||||+|+.|++.++++++++|.++...                ....++++....++...+.    ..+
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~----~~~   61 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK----EDE   61 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc----CCC
Confidence            47999999999999999999999999999998876431                0122334444444444443    247


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      ||+||.+..... .    .+    ..+|.+|+|++|.+++..|+..|..
T Consensus        62 wVidG~~~~~~~-~----~l----~~~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         62 WIIDGNYGGTMD-I----RL----NAADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             EEEeCCcchHHH-H----HH----HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence            999996443321 1    11    2479999999999999999999864

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.56  E-value=7.4e-14  Score=108.29  Aligned_cols=162  Identities=20%  Similarity=0.195  Sum_probs=112.6

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHH---------------
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVG---------------   97 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---------------   97 (245)
                      ++.++|..||||||+++.|. .+|+++|++|.+.|+...++++..+.+.+.|......++..+.+               
T Consensus         3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~   81 (225)
T KOG3220|consen    3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQ   81 (225)
T ss_pred             EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHH
Confidence            67899999999999999997 89999999999999999999999999988887653333321111               


Q ss_pred             -------------HHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970           98 -------------IIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus        98 -------------~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                                   ++.+.......+..+|+=..|.-.+- . +.       .....+|.+-|+.+..++|+..|.     
T Consensus        82 ~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~-~-~~-------~~~~~tvvV~cd~~~Ql~Rl~~Rd-----  147 (225)
T KOG3220|consen   82 ALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA-K-LL-------KICHKTVVVTCDEELQLERLVERD-----  147 (225)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH-h-HH-------hheeeEEEEEECcHHHHHHHHHhc-----
Confidence                         11111111112223333334433322 1 11       234578999999999999999874     


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                  ..+.+..++|+..    ..++.+..+..+  +++|++.+++++.+.|..++
T Consensus       148 ----------------------------~lse~dAe~Rl~s----Qmp~~~k~~~a~--~Vi~Nng~~~~l~~qv~~v~  192 (225)
T KOG3220|consen  148 ----------------------------ELSEEDAENRLQS----QMPLEKKCELAD--VVIDNNGSLEDLYEQVEKVL  192 (225)
T ss_pred             ----------------------------cccHHHHHHHHHh----cCCHHHHHHhhh--eeecCCCChHHHHHHHHHHH
Confidence                                        4466777778775    455555555434  67999999999999988765

>PRK07933 thymidylate kinase; Validated

Probab=99.56  E-value=8.7e-14  Score=112.34  Aligned_cols=179  Identities=14%  Similarity=0.084  Sum_probs=93.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcC--CC-CCHHHHH-HHHHHHHc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKG--EL-VSDDLVV-GIIDQAMK  104 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~--~~-~~~~~~~-~~l~~~l~  104 (245)
                      |+|+|.|+.||||||+++.|++.+.   ..++-+.    .....+++.|..+++.+...  .. ....... -....+..
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~----~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~   76 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLA----FPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG   76 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEe----cCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence            5899999999999999999999983   3333221    00001344566666655532  11 1111111 11111111


Q ss_pred             C-------CCCCCceEEcCCCCCHHH--H-----------HHHHHHHHh---cCCCccEEEEEecCHHHHHHHHhCCccc
Q 025970          105 K-------PSCEKGFILDGFPRTVVQ--A-----------EKLDEMLEK---QGTKIDKVLNFAIDDSILEERITGRWIH  161 (245)
Q Consensus       105 ~-------~~~~~~~iidg~p~~~~~--~-----------~~l~~~~~~---~~~~~~~vi~L~~~~e~~~~R~~~r~~~  161 (245)
                      .       +..+..+|.|.|..+...  .           ..+...+..   ....||++|+|++|++++.+|+..|...
T Consensus        77 ~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~  156 (213)
T PRK07933         77 ARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ  156 (213)
T ss_pred             hHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence            1       122345677776444311  1           111111211   1247999999999999999999988521


Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh--cCcEEEEeCCCChhHHHHHH
Q 025970          162 PASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK--KGVLAQLHAEKPPKEVTVEV  239 (245)
Q Consensus       162 ~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~--~~~~~~id~~~~~e~v~~~i  239 (245)
                      . .+..                     ..+-+...+.+++-.+.|.+       ....  ...++.||++.+++++.+.|
T Consensus       157 ~-~~~~---------------------~d~~E~~~~f~~~v~~~Y~~-------~~~~~~~~~~~~ida~~~~e~v~~~i  207 (213)
T PRK07933        157 D-ADRA---------------------RDAYERDDGLQQRTGAVYAE-------LAAQGWGGPWLVVDPDVDPAALAARL  207 (213)
T ss_pred             c-CCcc---------------------cccccccHHHHHHHHHHHHH-------HHHhcCCCCeEEeCCCCCHHHHHHHH
Confidence            0 0000                     00001111122221222222       2222  23788999999999999999


Q ss_pred             HHhh
Q 025970          240 QKVL  243 (245)
Q Consensus       240 ~~~l  243 (245)
                      .+.|
T Consensus       208 ~~~~  211 (213)
T PRK07933        208 AAAL  211 (213)
T ss_pred             HHHh
Confidence            8876

>PRK04182 cytidylate kinase; Provisional

Probab=99.56  E-value=3.5e-13  Score=105.76  Aligned_cols=111  Identities=21%  Similarity=0.239  Sum_probs=70.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS--DDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~l~~~l~~~~~~  109 (245)
                      |+|+|+|++||||||+++.|++.+|+++++++++++............+..   .+...+  ...+...+.. +.  ...
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~--~~~   74 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK---YAEEDPEIDKEIDRRQLE-IA--EKE   74 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH---HhhcCchHHHHHHHHHHH-HH--hcC
Confidence            589999999999999999999999999999988888765432111111111   122111  1112222211 11  023


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .++|++|.-...        .+.   ..++++|+|++|++++.+|+..|.
T Consensus        75 ~~~Vi~g~~~~~--------~~~---~~~~~~V~l~a~~e~~~~Rl~~r~  113 (180)
T PRK04182         75 DNVVLEGRLAGW--------MAK---DYADLKIWLKAPLEVRAERIAERE  113 (180)
T ss_pred             CCEEEEEeecce--------Eec---CCCCEEEEEECCHHHHHHHHHhcc
Confidence            578888742111        110   126799999999999999999874

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.55  E-value=2.9e-13  Score=110.83  Aligned_cols=164  Identities=13%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHHHH---------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-----GELVSDDLVVG---------   97 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~---------   97 (245)
                      ++|.|+|++||||||+++.|++.+|+++|++|.+.++...++.+....+.+.|..     ++.++...+..         
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999899999999999999988887766666655532     12232221111         


Q ss_pred             ---------HH----HHHHcC---------CC-CCC-ceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHH
Q 025970           98 ---------II----DQAMKK---------PS-CEK-GFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE  153 (245)
Q Consensus        98 ---------~l----~~~l~~---------~~-~~~-~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~  153 (245)
                               .+    ...+..         .. .+. .+|+| .|.-.+..  +      ....+|.+|++++|.++..+
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL~E~~--~------~~~~~D~iv~V~a~~e~ri~  152 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTLFETK--T------FTYFVSASVVVSCSEERQIE  152 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echhhccC--c------hhhcCCeEEEEECCHHHHHH
Confidence                     11    111110         00 112 34444 33322110  0      01246999999999999999


Q ss_pred             HHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC--CC
Q 025970          154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE--KP  231 (245)
Q Consensus       154 R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~--~~  231 (245)
                      |+..|+                                 +.+.+.+.+|+..-.    +..+.-...+  ++|+++  ++
T Consensus       153 RL~~R~---------------------------------g~s~eea~~Ri~~Q~----~~~ek~~~aD--~VI~N~~~g~  193 (244)
T PTZ00451        153 RLRKRN---------------------------------GFSKEEALQRIGSQM----PLEEKRRLAD--YIIENDSADD  193 (244)
T ss_pred             HHHHcC---------------------------------CCCHHHHHHHHHhCC----CHHHHHHhCC--EEEECCCCCC
Confidence            999873                                 446678888886521    1222222222  456677  89


Q ss_pred             hhHHHHHHHHhh
Q 025970          232 PKEVTVEVQKVL  243 (245)
Q Consensus       232 ~e~v~~~i~~~l  243 (245)
                      ++++..+|.+.+
T Consensus       194 ~~~L~~~v~~~~  205 (244)
T PTZ00451        194 LDELRGSVCDCV  205 (244)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>PRK06762 hypothetical protein; Provisional

Probab=99.55  E-value=2.6e-13  Score=105.41  Aligned_cols=159  Identities=12%  Similarity=0.078  Sum_probs=96.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      |++|+|.|+|||||||+|+.|++.+  ++.+++.|.+-+. +.....         .. .......+..+....+   ..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~-l~~~~~---------~~-~~~~~~~~~~~~~~~~---~~   67 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD-MLRVKD---------GP-GNLSIDLIEQLVRYGL---GH   67 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH-hccccC---------CC-CCcCHHHHHHHHHHHH---hC
Confidence            5789999999999999999999998  5677887655432 211100         00 0011122222222222   12


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      +..+|+|+..........+..+.... ..+..+|+|++|.+++.+|..+|...                           
T Consensus        68 g~~vild~~~~~~~~~~~~~~l~~~~-~~~~~~v~Ldap~e~~~~R~~~R~~~---------------------------  119 (166)
T PRK06762         68 CEFVILEGILNSDRYGPMLKELIHLF-RGNAYTYYFDLSFEETLRRHSTRPKS---------------------------  119 (166)
T ss_pred             CCEEEEchhhccHhHHHHHHHHHHhc-CCCeEEEEEeCCHHHHHHHHhccccc---------------------------
Confidence            34688888754444444455444433 33668999999999999999988520                           


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                         .....+.++.+++.+.    .+. .   . -.+.++.+.+++++.+.|...+
T Consensus       120 ---~~~~~~~l~~~~~~~~----~~~-~---~-~~~~~~~~~~~~~v~~~i~~~~  162 (166)
T PRK06762        120 ---HEFGEDDMRRWWNPHD----TLG-V---I-GETIFTDNLSLKDIFDAILTDI  162 (166)
T ss_pred             ---ccCCHHHHHHHHhhcC----CcC-C---C-CeEEecCCCCHHHHHHHHHHHh
Confidence               1123445544443321    111 1   1 2366677899999999998765

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.5e-13  Score=102.24  Aligned_cols=163  Identities=20%  Similarity=0.242  Sum_probs=106.5

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCCC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD----LVVGIIDQAMKKPSC  108 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~~l~~~l~~~~~  108 (245)
                      .|++.|++||||||+++.|++++++.+++.|++=          ...-.+.+..|..+.|+    |+.++-.........
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~H----------p~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~   83 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLH----------PPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALAS   83 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhCCcccccccCC----------CHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhc
Confidence            8899999999999999999999999999998861          22224456667766553    444433333333345


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHh--cCC---CccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCC
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEK--QGT---KIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDV  183 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~--~~~---~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~  183 (245)
                      ..++|+-+......++..+.+.+..  .+.   .--.+|+|.++.+++.+|+..|..|-          .|         
T Consensus        84 ~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHF----------Mp---------  144 (191)
T KOG3354|consen   84 GQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHF----------MP---------  144 (191)
T ss_pred             CCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccccc----------CC---------
Confidence            6788987776666666666654431  111   11368999999999999999997432          22         


Q ss_pred             CCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhh
Q 025970          184 TGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVL  243 (245)
Q Consensus       184 ~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l  243 (245)
                                  .+-++.++..       ++.--.+...++.|+.. .++++++..|.+.+
T Consensus       145 ------------~~lleSQf~~-------LE~p~~~e~div~isv~~~~~e~iv~tI~k~~  186 (191)
T KOG3354|consen  145 ------------ADLLESQFAT-------LEAPDADEEDIVTISVKTYSVEEIVDTIVKMV  186 (191)
T ss_pred             ------------HHHHHHHHHh-------ccCCCCCccceEEEeeccCCHHHHHHHHHHHH
Confidence                        1223322221       11001122257888886 99999998887755

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.53  E-value=5.4e-13  Score=121.54  Aligned_cols=118  Identities=16%  Similarity=0.228  Sum_probs=77.0

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCC
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~  106 (245)
                      |.|.+.|+|+|+|||||||+++.||+.+|++++++|..+.+.      .|..+.+++.. |..-..+.-.+.+.+.... 
T Consensus         3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~-   75 (542)
T PRK14021          3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVADMLED-   75 (542)
T ss_pred             CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            567778999999999999999999999999999999998874      34445555532 3222222333333332211 


Q ss_pred             CCCCceEEcC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          107 SCEKGFILDG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       107 ~~~~~~iidg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                        .+.+|-.|  .+........|.+++.+.    ..+|||++|++++.+|+..+
T Consensus        76 --~~~VIs~GGG~v~~~~n~~~L~~~~~~~----g~vv~L~~~~~~l~~Rl~~~  123 (542)
T PRK14021         76 --FDGIFSLGGGAPMTPSTQHALASYIAHG----GRVVYLDADPKEAMERANRG  123 (542)
T ss_pred             --CCeEEECCCchhCCHHHHHHHHHHHhcC----CEEEEEECCHHHHHHHHhCC
Confidence              12333232  344444444444343332    37999999999999998754

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=2.9e-13  Score=100.14  Aligned_cols=154  Identities=21%  Similarity=0.244  Sum_probs=100.2

Q ss_pred             ECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCCCCCce
Q 025970           37 IGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD----LVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        37 ~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~~l~~~l~~~~~~~~~  112 (245)
                      .|..||||||+++.|++++|..+|+.|++          ....-.+.+..|..+.|+    |+..+-.........++..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdl----------Hp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~   70 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDL----------HPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV   70 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceeccccc----------CCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence            48999999999999999999999999876          122234456778777664    3433333333323334445


Q ss_pred             EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCC
Q 025970          113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK  192 (245)
Q Consensus       113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~  192 (245)
                      |+-+......++..|...    ... -.+|||+.+.+++.+|++.|..|-.          |                  
T Consensus        71 vi~CSALKr~YRD~LR~~----~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM----------~------------------  117 (161)
T COG3265          71 VIACSALKRSYRDLLREA----NPG-LRFVYLDGDFDLILERMKARKGHFM----------P------------------  117 (161)
T ss_pred             EEecHHHHHHHHHHHhcc----CCC-eEEEEecCCHHHHHHHHHhcccCCC----------C------------------
Confidence            665555555565554431    122 4799999999999999999974322          2                  


Q ss_pred             CCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       193 ~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                         ..-++.++       ..++.--.+. .++.||.+.+++++.+.+...++
T Consensus       118 ---~~ll~SQf-------a~LE~P~~de-~vi~idi~~~~e~vv~~~~~~l~  158 (161)
T COG3265         118 ---ASLLDSQF-------ATLEEPGADE-DVLTIDIDQPPEEVVAQALAWLK  158 (161)
T ss_pred             ---HHHHHHHH-------HHhcCCCCCC-CEEEeeCCCCHHHHHHHHHHHHh
Confidence               12222222       2222222222 58999999999999999888765

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.51  E-value=1.3e-13  Score=108.06  Aligned_cols=153  Identities=15%  Similarity=0.166  Sum_probs=93.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHH------------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDL------------   94 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~------------   94 (245)
                      |+|.|+|+.||||||+++.|++ +|++++++|.+.++.+.++++....+.+.|...     +.++...            
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5899999999999999999988 999999999999999888888777777766532     2232221            


Q ss_pred             ------HHHH----HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970           95 ------VVGI----IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus        95 ------~~~~----l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                            +..+    +...+........++++ .|.-.+.         ++...+|.+|++.||.++.++|+..|.     
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~---------~~~~~~D~vi~V~a~~e~ri~Rl~~R~-----  144 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES---------GLEKLCDEVIVVYAPEEIRIKRLMERD-----  144 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT---------TGGGGSSEEEEEE--HHHHHHHHHHHH-----
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh---------hHhhhhceEEEEECCHHHHHHHHHhhC-----
Confidence                  1112    12222222112334444 3432211         111357999999999999999999884     


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhH
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKE  234 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~  234 (245)
                                                  +.+.+.+..|+..    ..+..+.....+  ++|+++++.++
T Consensus       145 ----------------------------~~~~~~~~~ri~~----Q~~~~~k~~~ad--~vI~N~g~~~~  180 (180)
T PF01121_consen  145 ----------------------------GLSEEEAEARIAS----QMPDEEKRKRAD--FVIDNNGSLEE  180 (180)
T ss_dssp             ----------------------------TSTHHHHHHHHHT----S--HHHHHHH-S--EEEE-SSHHH-
T ss_pred             ----------------------------CCcHHHHHHHHHh----CCCHHHHHHhCC--EEEECCCCCCC
Confidence                                        4466677777654    233333333333  56777777654

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.50  E-value=2.9e-13  Score=107.78  Aligned_cols=162  Identities=11%  Similarity=0.142  Sum_probs=104.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHH--------------
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDD--------------   93 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~--------------   93 (245)
                      .|+|+|++||||||+++.|++ +|++++++|.+.+..+.++.+....+.+.|...     +.+...              
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            478999999999999999975 799999999999998887777666666554321     222221              


Q ss_pred             ----HHHHHHHH----HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970           94 ----LVVGIIDQ----AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus        94 ----~~~~~l~~----~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                          ++...+..    .+.... ...+++-..|.-.+..         ....+|.+|++++|+++..+|+..|.      
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~-~~~~vi~e~pLL~E~~---------~~~~~D~vi~V~a~~e~r~~RL~~R~------  143 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTA-EGKLVIWEVPLLFETD---------AYTLCDATVTVDSDPEESILRTISRD------  143 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHh-cCCcEEEEeeeeeEcC---------chhhCCEEEEEECCHHHHHHHHHHcC------
Confidence                11112211    111111 1234443344433211         11346999999999999999999883      


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                                 +.+.+.+..|+..-   + +..+.-...+  ++|+++.+.+++..+|...++
T Consensus       144 ---------------------------g~s~e~a~~ri~~Q---~-~~~~k~~~aD--~vI~N~~~~~~l~~~v~~l~~  189 (196)
T PRK14732        144 ---------------------------GMKKEDVLARIASQ---L-PITEKLKRAD--YIVRNDGNREGLKEECKILYS  189 (196)
T ss_pred             ---------------------------CCCHHHHHHHHHHc---C-CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence                                       34567788887652   1 3333333333  467788899999999887653

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.50  E-value=9.9e-13  Score=103.47  Aligned_cols=116  Identities=17%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC-----CCCH---------------
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE-----LVSD---------------   92 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-----~~~~---------------   92 (245)
                      +|+|+|++||||||+++.|++ +|++++++|.+.++....+......+.+.+..+.     .+..               
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999998 9999999999999988887777777777664321     2221               


Q ss_pred             ---HHHHHHHHHHH----cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           93 ---DLVVGIIDQAM----KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        93 ---~~~~~~l~~~l----~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                         .++...+...+    .... ...+++-..|......  +       ...+|.+|++++|+++.++|+..|.
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~-~~~~vive~plL~e~~--~-------~~~~D~vv~V~a~~~~ri~Rl~~Rd  143 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEAR-KEKVVVLDIPLLFETG--L-------EKLVDRVIVVDAPPEIQIERLMKRD  143 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-CCCEEEEEehHhhcCC--c-------HHhCCeEEEEECCHHHHHHHHHHcC
Confidence               11222222221    1111 1234432233332211  1       1356999999999999999999884

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.50  E-value=1.3e-12  Score=101.09  Aligned_cols=157  Identities=19%  Similarity=0.223  Sum_probs=88.0

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCCC
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~l~~~l~~~~~~  109 (245)
                      |+|.|++||||||+++.|+..++..+++.|++......         .. ...+....    ..+...+..........+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   70 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------EK-MSAGIPLNDDDRWPWLQNLNDASTAAAAKN   70 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------HH-HHcCCCCChhhHHHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999886422100         00 00011111    122222221111111112


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI  189 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~  189 (245)
                      ...|++...........+    ...+. .-.+|+|++|++++.+|+..|..+                            
T Consensus        71 ~~~Vi~~t~~~~~~r~~~----~~~~~-~~~~i~l~~~~e~~~~R~~~R~~~----------------------------  117 (163)
T TIGR01313        71 KVGIITCSALKRHYRDIL----REAEP-NLHFIYLSGDKDVILERMKARKGH----------------------------  117 (163)
T ss_pred             CCEEEEecccHHHHHHHH----HhcCC-CEEEEEEeCCHHHHHHHHHhccCC----------------------------
Confidence            223554432322222222    23332 335799999999999999988410                            


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                         ....+.+..++..+..   +    ......++.||++.+++++.+.|...|
T Consensus       118 ---~~~~~~i~~~~~~~~~---~----~~~e~~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       118 ---FMKADMLESQFAALEE---P----LADETDVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             ---CCCHHHHHHHHHHhCC---C----CCCCCceEEEECCCCHHHHHHHHHHHH
Confidence               0112344444433211   0    011125789999999999999988765

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.49  E-value=1.2e-12  Score=106.33  Aligned_cols=178  Identities=15%  Similarity=0.115  Sum_probs=91.5

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHH--HHHHHHcCCchHH------HHHHHHHcCC---CCCHHHHHHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM--LRSAVAAKTPLGI------KAKEAMDKGE---LVSDDLVVGIIDQ  101 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l--i~~~~~~~~~~~~------~i~~~l~~~~---~~~~~~~~~~l~~  101 (245)
                      +|+|.|+.||||||+++.|++.++..++.....  .......++..+.      .++.+.....   .........++..
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            489999999999999999999998755533211  0000001112221      1333332211   1222221112222


Q ss_pred             HHcC--------CCCCCceEEcCCCCCHH-H--------------HHHHH---HHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970          102 AMKK--------PSCEKGFILDGFPRTVV-Q--------------AEKLD---EMLEKQGTKIDKVLNFAIDDSILEERI  155 (245)
Q Consensus       102 ~l~~--------~~~~~~~iidg~p~~~~-~--------------~~~l~---~~~~~~~~~~~~vi~L~~~~e~~~~R~  155 (245)
                      +...        ...+..+|+|.++.+.. .              ...+.   ..+......||++|||++|++.+.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence            2111        22345788888744321 1              11111   111112267999999999999999999


Q ss_pred             hCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC--CChh
Q 025970          156 TGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE--KPPK  233 (245)
Q Consensus       156 ~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~--~~~e  233 (245)
                      ..|....+                            ...+.+. ..++..++..+.  ...|.....++.+|++  .+.+
T Consensus       161 ~~R~~~~e----------------------------~~~~~~y-l~~l~~~y~~~~--~~~~~~~~~~i~id~~~~~~~e  209 (219)
T cd02030         161 KKRGDPHE----------------------------MKVTSAY-LQDIENAYKKTF--LPEISEHSEVLQYDWTEAGDTE  209 (219)
T ss_pred             HHcCCchh----------------------------hcccHHH-HHHHHHHHHHHH--HHhhccCCCEEEEeCCChhhHH
Confidence            98852100                            0112222 222322222221  1113334578899998  8888


Q ss_pred             HHHHHHHH
Q 025970          234 EVTVEVQK  241 (245)
Q Consensus       234 ~v~~~i~~  241 (245)
                      +++..|..
T Consensus       210 ~i~~~I~~  217 (219)
T cd02030         210 KVVEDIEY  217 (219)
T ss_pred             HHHHHHHc
Confidence            88888754

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.47  E-value=2.1e-12  Score=110.01  Aligned_cols=131  Identities=13%  Similarity=0.157  Sum_probs=75.3

Q ss_pred             hHHHHHHHHhc---cCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHH-cCCCC
Q 025970           15 DMMTELLRRFK---CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGELV   90 (245)
Q Consensus        15 ~~~~~~~~~~~---~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~   90 (245)
                      +...++++.+.   .-+.++..|+|+|+|||||||+++.|++.+|++++++|..+.+...      ..+.+++. .|...
T Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G------~~i~ei~~~~G~~~  187 (309)
T PRK08154        114 ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG------LSVSEIFALYGQEG  187 (309)
T ss_pred             HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC------CCHHHHHHHHCHHH
Confidence            34445554433   3556788999999999999999999999999999999987766422      11222221 12111


Q ss_pred             CHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           91 SDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        91 ~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ........+...+..   ....|+............+..++     ...++|||++|++++.+|+..|.
T Consensus       188 fr~~e~~~l~~ll~~---~~~~VI~~Ggg~v~~~~~~~~l~-----~~~~~V~L~a~~e~~~~Rl~~r~  248 (309)
T PRK08154        188 YRRLERRALERLIAE---HEEMVLATGGGIVSEPATFDLLL-----SHCYTVWLKASPEEHMARVRAQG  248 (309)
T ss_pred             HHHHHHHHHHHHHhh---CCCEEEECCCchhCCHHHHHHHH-----hCCEEEEEECCHHHHHHHHhcCC
Confidence            111222223332221   12344432211111111122221     12479999999999999998864

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.46  E-value=1.7e-12  Score=113.95  Aligned_cols=162  Identities=15%  Similarity=0.154  Sum_probs=100.1

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH------------
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLV------------   95 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~------------   95 (245)
                      +|.|+|++||||||+++.|++ +|+++|++|.+.++.+.+++.....+.+.+..+     +.++...+            
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~   81 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARA   81 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            689999999999999999987 899999999999998887765544554444322     22222111            


Q ss_pred             ------HHHHH----HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970           96 ------VGIID----QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus        96 ------~~~l~----~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                            ...+.    ..+... .+..+++.+.|.-....         ....+|.+|++++|.+++++|+..|+      
T Consensus        82 ~le~i~hP~I~~~i~~~i~~~-~~~~vvv~eipLL~E~~---------~~~~~D~iI~V~ap~e~ri~Rl~~rR------  145 (395)
T PRK03333         82 VLNGIVHPLVGARRAELIAAA-PEDAVVVEDIPLLVESG---------MAPLFHLVVVVDADVEVRVRRLVEQR------  145 (395)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc-CCCCEEEEEeeeeecCC---------chhhCCEEEEEECCHHHHHHHHHhcC------
Confidence                  11122    122121 12346666655433211         11356899999999999999998853      


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                                 +.+.+....++.....    ..+.....+  ++|+++.+++++...|.+.++
T Consensus       146 ---------------------------g~s~~~a~~ri~~Q~~----~e~k~~~AD--~vIdN~~s~e~l~~~v~~~l~  191 (395)
T PRK03333        146 ---------------------------GMAEADARARIAAQAS----DEQRRAVAD--VWLDNSGTPDELVEAVRALWA  191 (395)
T ss_pred             ---------------------------CCCHHHHHHHHHhcCC----hHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence                                       2233344444433111    111111222  568889999999988877654

>PRK13976 thymidylate kinase; Provisional

Probab=99.46  E-value=9.8e-12  Score=99.97  Aligned_cols=119  Identities=18%  Similarity=0.100  Sum_probs=69.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCc-----ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-HHHHHHHHcC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCL-----CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLV-VGIIDQAMKK  105 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~l~~~l~~  105 (245)
                      ++|+|.|..||||||+++.|++.+.-     .++-+    +  ...++..|+.+++++.....+.+... .-.+..+..+
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~   74 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----R--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH   74 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----e--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence            58999999999999999999988742     22211    1  12356678888877764222322211 1111122111


Q ss_pred             --------CCCCCceEEcCCCCCH------------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          106 --------PSCEKGFILDGFPRTV------------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       106 --------~~~~~~~iidg~p~~~------------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                              +..+..+|.|.|..+.            .....+...+  ....||++|+|++|++++.+|+..+
T Consensus        75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~--~~~~PDl~i~Ldv~~e~a~~Ri~~~  145 (209)
T PRK13976         75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLV--VDKYPDITFVLDIDIELSLSRADKN  145 (209)
T ss_pred             HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHh--hCCCCCEEEEEeCCHHHHHHHhccc
Confidence                    1223446667654332            1222222222  1357999999999999999998644

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.45  E-value=7.6e-13  Score=99.98  Aligned_cols=117  Identities=22%  Similarity=0.351  Sum_probs=77.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCch---HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPL---GIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      +|+|.|+|||||||+++.|++.++..+++.|.+.........+-   ........       ...+...+...+.   .+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~---~g   70 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALR---NG   70 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHH---TT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHH---cC
Confidence            58999999999999999999999999999988765432211110   00000000       1122233333332   23


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      ..+|+|+..........+..++...+. +..+|+|++|++++.+|+..|..
T Consensus        71 ~~~vvd~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~~~~~~R~~~R~~  120 (143)
T PF13671_consen   71 NSVVVDNTNLSREERARLRELARKHGY-PVRVVYLDAPEETLRERLAQRNR  120 (143)
T ss_dssp             -EEEEESS--SHHHHHHHHHHHHHCTE-EEEEEEECHHHHHHHHHHHTTHC
T ss_pred             CCceeccCcCCHHHHHHHHHHHHHcCC-eEEEEEEECCHHHHHHHHHhcCC
Confidence            468888776777777777777766653 45899999999999999999974

...

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.43  E-value=3.1e-12  Score=98.65  Aligned_cols=103  Identities=22%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             CCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCCceEEcC--
Q 025970           40 PGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEKGFILDG--  116 (245)
Q Consensus        40 ~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~~~iidg--  116 (245)
                      |||||||+++.||+.+|++++++|+++.+..      |..+.+++.. |..-.......++...+...   ..+|..|  
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG   71 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKEN---NCVIACGGG   71 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEEEE-TT
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhccC---cEEEeCCCC
Confidence            7999999999999999999999999987743      3444444432 21111122333333333322   3444333  


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          117 FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       117 ~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .+........+.+        ...+|||+++++.+.+|+..+.
T Consensus        72 ~~~~~~~~~~L~~--------~g~vI~L~~~~~~l~~Rl~~~~  106 (158)
T PF01202_consen   72 IVLKEENRELLKE--------NGLVIYLDADPEELAERLRARD  106 (158)
T ss_dssp             GGGSHHHHHHHHH--------HSEEEEEE--HHHHHHHHHHHC
T ss_pred             CcCcHHHHHHHHh--------CCEEEEEeCCHHHHHHHHhCCC
Confidence            3444444443331        2579999999999999998764

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.42  E-value=2.3e-12  Score=101.94  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=88.6

Q ss_pred             EECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH-HHH-------Hc-CC
Q 025970           36 LIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DQA-------MK-KP  106 (245)
Q Consensus        36 i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l-~~~-------l~-~~  106 (245)
                      |.|++||||||+++.|++.+.-..+.. -+  .....+++.|..+++++.............+. ..+       +. .+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~-~~--~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l   77 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKV-II--TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL   77 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEE-EE--EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcc-cc--cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999983322210 00  00023456777777777743333332221111 111       11 11


Q ss_pred             CCCCceEEcCCCC------------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCC
Q 025970          107 SCEKGFILDGFPR------------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAP  174 (245)
Q Consensus       107 ~~~~~~iidg~p~------------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~  174 (245)
                      ..+..+|.|.+..            .......+...+.  +..||++|+|+++++++.+|+..|....            
T Consensus        78 ~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~--~~~PDl~~~Ldv~pe~~~~R~~~r~~~~------------  143 (186)
T PF02223_consen   78 KRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIF--LPKPDLTFFLDVDPEEALKRIAKRGEKD------------  143 (186)
T ss_dssp             HTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHH--TTE-SEEEEEECCHHHHHHHHHHTSSTT------------
T ss_pred             cCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhc--CCCCCEEEEEecCHHHHHHHHHcCCccc------------
Confidence            1234566665311            1222222222221  1289999999999999999999996300            


Q ss_pred             CCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 025970          175 PKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV  239 (245)
Q Consensus       175 p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i  239 (245)
                                      +.........   ..+++..   .+.+...+.+++||++.++++++++|
T Consensus       144 ----------------~~~~~~~~~~---~~~~~~y---~~l~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  144 ----------------DEEEEDLEYL---RRVREAY---LELAKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             ----------------TTTTHHHHHH---HHHHHHH---HHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred             ----------------hHHHHHHHHH---HHHHHHH---HHHHcCCCCEEEEECCCCHHHHHhhC
Confidence                            0111111222   2222222   22222346799999999999999876

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.42  E-value=5.4e-12  Score=96.50  Aligned_cols=109  Identities=15%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCceE
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFI  113 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~i  113 (245)
                      |+|+|+|||||||+++.|++.+|+.+++.|.+++.....  ........   .|    ...+.......+.......++|
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~~~~~~~v   72 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLLLTKENAV   72 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHHhccCCcE
Confidence            789999999999999999999999999999887765321  22111111   11    1222222121222222223445


Q ss_pred             EcCC---CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          114 LDGF---PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       114 idg~---p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      +++.   ........    .+    .....+|||++|++++.+|+..|.
T Consensus        73 i~~g~~~i~~~~~~~----~~----~~~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          73 IATGGGAVLREENRR----LL----LENGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             EECCCCccCcHHHHH----HH----HcCCeEEEEeCCHHHHHHHhccCC
Confidence            5432   12222211    21    124579999999999999998874

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.40  E-value=5.2e-12  Score=99.34  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=27.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ..++|+|.|+.|+||||++++|++++|..++
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            3579999999999999999999999997654

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.40  E-value=2.3e-11  Score=96.79  Aligned_cols=121  Identities=15%  Similarity=0.067  Sum_probs=64.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH--H--H---HHHHHHHHHcC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD--D--L---VVGIIDQAMKK  105 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~--~--~---~~~~l~~~l~~  105 (245)
                      +|+|.|++||||||+++.|++.+++.++.-..-   ......+   .+..++.+......  +  .   ..+.+...+..
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~---~~~~~~~---~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE---PDVEGNP---FLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcccccccc---ccCCCCC---CHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            489999999999999999999887754422100   0000011   11111111000000  0  0   11111122221


Q ss_pred             CCCCCceEEcCCCCCHHH---------------HHHH---HHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          106 PSCEKGFILDGFPRTVVQ---------------AEKL---DEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       106 ~~~~~~~iidg~p~~~~~---------------~~~l---~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ...+..+|+|.++.+...               ...+   ...+......|+++|||+++++++.+|+.+|.
T Consensus        75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~  146 (193)
T cd01673          75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG  146 (193)
T ss_pred             cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            223457888987654210               1111   11122223579999999999999999999875

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.39  E-value=2.7e-11  Score=100.24  Aligned_cols=112  Identities=21%  Similarity=0.230  Sum_probs=67.5

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS  107 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~  107 (245)
                      +|+|+|+|||||||+|+.|++.++     +.+++.| .++........   .....+       ......++...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D-~lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD-LIRESFPVWKE---KYEEFI-------RDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH-HHHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHhC--
Confidence            489999999999999999998873     3456654 34443211101   111111       11222333333332  


Q ss_pred             CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                       +..+|+|+..........+.......+ .+.++|||++|.+++.+|...|.
T Consensus        68 -~~~VI~D~~~~~~~~r~~l~~~ak~~~-~~~~~I~l~~p~e~~~~Rn~~R~  117 (249)
T TIGR03574        68 -KYSVIVDDTNYYNSMRRDLINIAKEYN-KNYIIIYLKAPLDTLLRRNIERG  117 (249)
T ss_pred             -CCeEEEeccchHHHHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHHhCC
Confidence             235888986544444444544444443 45689999999999999988773

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.36  E-value=1.7e-11  Score=97.08  Aligned_cols=160  Identities=14%  Similarity=0.146  Sum_probs=89.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcC-----CchHHHHHHHHHcCCCCCHHHHH--------HH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAK-----TPLGIKAKEAMDKGELVSDDLVV--------GI   98 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~-----~~~~~~i~~~l~~~~~~~~~~~~--------~~   98 (245)
                      .+++|+||+||||||+++.|+..++..++..+..+.......     ...++.....++.+... ..|..        .-
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~~   81 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGIE   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcHH
Confidence            578999999999999999999887765554443322110000     01112222222222211 11100        01


Q ss_pred             HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCC
Q 025970           99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVH  178 (245)
Q Consensus        99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~  178 (245)
                      +...+..   +..+|++|.   ......+.+   .. ..+..+|+|++|.+++.+|+..|.                   
T Consensus        82 ~~~~l~~---g~~VI~~G~---~~~~~~~~~---~~-~~~~~vi~l~~s~e~l~~RL~~R~-------------------  132 (186)
T PRK10078         82 IDLWLHA---GFDVLVNGS---RAHLPQARA---RY-QSALLPVCLQVSPEILRQRLENRG-------------------  132 (186)
T ss_pred             HHHHHhC---CCEEEEeCh---HHHHHHHHH---Hc-CCCEEEEEEeCCHHHHHHHHHHhC-------------------
Confidence            2223322   345777665   111122222   12 234578999999999999998763                   


Q ss_pred             CCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          179 GFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                    ..+.+.+..|+..+.        +|.. ...++|+++.+++++.+.|.+.|.
T Consensus       133 --------------~~~~~~i~~rl~r~~--------~~~~-ad~~vi~~~~s~ee~~~~i~~~l~  175 (186)
T PRK10078        133 --------------RENASEINARLARAA--------RYQP-QDCHTLNNDGSLRQSVDTLLTLLH  175 (186)
T ss_pred             --------------CCCHHHHHHHHHHhh--------hhcc-CCEEEEeCCCCHHHHHHHHHHHHh
Confidence                          123455777774321        2222 245778888999999999988774

>PRK07261 topology modulation protein; Provisional

Probab=99.34  E-value=3.8e-12  Score=99.37  Aligned_cols=101  Identities=20%  Similarity=0.264  Sum_probs=71.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      +.|+|+|+|||||||+++.|++.+++++++.|.+....   +             ....+.+.+...+...+..    ..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~----~~   60 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLLK----HD   60 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHhC----CC
Confidence            47999999999999999999999999999987653210   0             0112233344444444432    35


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      ||+||..........+.        ..|.+|+|++|...++.|+..|..
T Consensus        61 wIidg~~~~~~~~~~l~--------~ad~vI~Ld~p~~~~~~R~lkR~~  101 (171)
T PRK07261         61 WIIDGNYSWCLYEERMQ--------EADQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             EEEcCcchhhhHHHHHH--------HCCEEEEEcCCHHHHHHHHHHHHH
Confidence            99999876543333222        358999999999999999998864

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.33  E-value=3.1e-11  Score=92.08  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCC-C
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDQAMKKP-S  107 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~l~~~l~~~-~  107 (245)
                      +|+|.|+|||||||+++.|++.++..+++.|.+......          ..+..|...+    ..++..+........ .
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   70 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS   70 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999887543110          0011111111    112222211111111 2


Q ss_pred             CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .+..+|+|...........+..++  .+ .+..+|+|++|.+++.+|+..|.
T Consensus        71 ~~~~vVid~~~~~~~~r~~~~~~~--~~-~~~~~v~l~~~~~~~~~R~~~R~  119 (150)
T cd02021          71 AGEGVVVACSALKRIYRDILRGGA--AN-PRVRFVHLDGPREVLAERLAARK  119 (150)
T ss_pred             CCCCEEEEeccccHHHHHHHHhcC--CC-CCEEEEEEECCHHHHHHHHHhcc
Confidence            344678886544444444444332  22 34579999999999999999985

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.33  E-value=4.8e-11  Score=93.54  Aligned_cols=158  Identities=19%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH------H-HHHHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD------D-LVVGIIDQAM  103 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~------~-~~~~~l~~~l  103 (245)
                      +.+++|.|++||||||+++.|+..++..+++.+++...         ..++. +..|....+      . .+.......+
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~---------~~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~   72 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA---------KNIDK-MSQGIPLTDEDRLPWLERLNDASYSLY   72 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH---------hHHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence            45789999999999999999999999888888765211         00111 111211111      1 1111111111


Q ss_pred             cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCC
Q 025970          104 KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDV  183 (245)
Q Consensus       104 ~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~  183 (245)
                       . ....|+|+..+. .......+.    +. ..+-.+|+|++|++++.+|+.+|..+                      
T Consensus        73 -~-~~~~g~iv~s~~-~~~~R~~~r----~~-~~~~~~v~l~a~~~~l~~Rl~~R~~~----------------------  122 (176)
T PRK09825         73 -K-KNETGFIVCSSL-KKQYRDILR----KS-SPNVHFLWLDGDYETILARMQRRAGH----------------------  122 (176)
T ss_pred             -h-cCCCEEEEEEec-CHHHHHHHH----hh-CCCEEEEEEeCCHHHHHHHHhcccCC----------------------
Confidence             1 124577876553 333333222    22 33458999999999999999999521                      


Q ss_pred             CCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          184 TGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       184 ~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                               ....+.+..++..+...       -.....++.||++.+++++...+...+.
T Consensus       123 ---------~~~~~vl~~Q~~~~e~~-------~~~e~~~~~~d~~~~~~~~~~~~~~~~~  167 (176)
T PRK09825        123 ---------FMPPDLLQSQFDALERP-------CADEHDIARIDVNHDIENVTEQCRQAVQ  167 (176)
T ss_pred             ---------CCCHHHHHHHHHHcCCC-------CCCcCCeEEEECCCCHHHHHHHHHHHHH
Confidence                     12445555554433211       1112348999999999888877776654

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.32  E-value=1.2e-10  Score=92.74  Aligned_cols=123  Identities=17%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchH-HHHHHHHHcCCCCC----HHHHH--------
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLG-IKAKEAMDKGELVS----DDLVV--------   96 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~-~~i~~~l~~~~~~~----~~~~~--------   96 (245)
                      .+++|+|.|+|||||||+|+.|++.+|+.++..++++++.+......+ ......+..++.++    +.++.        
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            467999999999999999999999999999988899998877433221 11111111111111    11111        


Q ss_pred             --HHHHHHHc-CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEec-CHHHHHHHHhCCc
Q 025970           97 --GIIDQAMK-KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI-DDSILEERITGRW  159 (245)
Q Consensus        97 --~~l~~~l~-~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~-~~e~~~~R~~~r~  159 (245)
                        ..+..... ....+..+|+|+............    ..  . ..++++.+ +++++.+|+..|.
T Consensus        82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~----~~--~-v~~i~l~v~d~e~lr~Rl~~R~  141 (197)
T PRK12339         82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR----TN--N-IRAFYLYIRDAELHRSRLADRI  141 (197)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH----hc--C-eEEEEEEeCCHHHHHHHHHHHh
Confidence              11111111 112345789998655554432211    11  1 24566655 6778889999986

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.31  E-value=6.6e-11  Score=95.17  Aligned_cols=167  Identities=16%  Similarity=0.178  Sum_probs=91.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcce-eehHHHHHH---HHHcCCch----HHHHHHHHHcCCCCCH------
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH-LATGDMLRS---AVAAKTPL----GIKAKEAMDKGELVSD------   92 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~-i~~~~li~~---~~~~~~~~----~~~i~~~l~~~~~~~~------   92 (245)
                      .+.++.+|+|+||+||||||+++.|.+.. ..+ +.....-+.   .-..+..+    ...+...+..|..+..      
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~   87 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERK-LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN   87 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcC-CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence            56788999999999999999999998642 211 111000000   00000000    0122222323322211      


Q ss_pred             --HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecC--HHHHHHHHhCCcccCCCCccc
Q 025970           93 --DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID--DSILEERITGRWIHPASGRSY  168 (245)
Q Consensus        93 --~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~--~e~~~~R~~~r~~~~~~~~~y  168 (245)
                        .+....+...+..   ++.+|++.-+   .....+..      ..|+.++++.+|  .+++.+|+..|.         
T Consensus        88 ~YGt~~~~i~~~~~~---g~~vi~~~~~---~g~~~l~~------~~pd~~~if~~pps~e~l~~Rl~~R~---------  146 (206)
T PRK14738         88 YYGVPKAPVRQALAS---GRDVIVKVDV---QGAASIKR------LVPEAVFIFLAPPSMDELTRRLELRR---------  146 (206)
T ss_pred             eecCCHHHHHHHHHc---CCcEEEEcCH---HHHHHHHH------hCCCeEEEEEeCCCHHHHHHHHHHcC---------
Confidence              0011122222221   2346676533   22222222      246777777765  568899999874         


Q ss_pred             cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          169 HTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       169 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                              +++.+.+..|+..+........     ...++.||++.+++++++.|.+.|.
T Consensus       147 ------------------------~~~~~~~~~Rl~~~~~e~~~~~-----~~~~~iId~~~~~e~v~~~i~~~l~  193 (206)
T PRK14738        147 ------------------------TESPEELERRLATAPLELEQLP-----EFDYVVVNPEDRLDEAVAQIMAIIS  193 (206)
T ss_pred             ------------------------CCCHHHHHHHHHHHHHHHhccc-----CCCEEEECCCCCHHHHHHHHHHHHH
Confidence                                    3345678888877655443211     1257889999999999999998774

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.30  E-value=7.9e-12  Score=94.74  Aligned_cols=103  Identities=22%  Similarity=0.279  Sum_probs=64.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  112 (245)
                      +|+|.|+|||||||+|+.|++.+|+++++.+.+.....      ........ .     ...+...+...+........|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~-~-----~~~i~~~l~~~~~~~~~~~~~   68 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVA-A-----IPEVRKALDERQRELAKKPGI   68 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhc-c-----cHhHHHHHHHHHHHHhhCCCE
Confidence            48999999999999999999999999999974422211      11111000 0     011122222222222223579


Q ss_pred             EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                      |+||......        +   ...++.+|+|++|++.+.+|+..|
T Consensus        69 Vidg~~~~~~--------~---~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          69 VLEGRDIGTV--------V---FPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             EEEeeeeeeE--------E---cCCCCEEEEEECCHHHHHHHHHHH
Confidence            9998643210        0   134689999999999999999885

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.30  E-value=6.2e-11  Score=106.59  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      |.|+|+|+|||||||+++.|++.+|++++++|.++.+.      .|..+.+++.. |.......-.+.+.+...    ..
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~----~~   70 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVE----RD   70 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhh----cC
Confidence            57999999999999999999999999999999998763      22222333322 221111222222222211    11


Q ss_pred             ceEE-cCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          111 GFIL-DGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       111 ~~ii-dg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                      ..|+ .|.  +........+.         ...+|||++|++++.+|+..+
T Consensus        71 ~~Vis~Gggvv~~~~~r~~l~---------~~~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         71 NVVVATGGGVVIDPENRELLK---------KEKTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             CEEEECCCccccChHHHHHHh---------cCeEEEEECCHHHHHHHhccC
Confidence            2333 332  22223333221         135899999999999999765

>PRK06547 hypothetical protein; Provisional

Probab=99.30  E-value=1.7e-11  Score=95.63  Aligned_cols=127  Identities=13%  Similarity=0.039  Sum_probs=72.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCC--CHHHHHHHHHHHHc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV--SDDLVVGIIDQAMK  104 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~l~~~l~  104 (245)
                      ...++++|+|.|++||||||+++.|++.++..+++.|++..................+..|...  +-++...... .+.
T Consensus        11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~-~~~   89 (172)
T PRK06547         11 CGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPG-DWV   89 (172)
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCC-CcE
Confidence            4677889999999999999999999999999999998876431110001111112222233211  1000000000 000


Q ss_pred             CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .......+|++|.......   +...+.+  ....+.|||++|.+++.+|+..|.
T Consensus        90 ~l~~~~vVIvEG~~al~~~---~r~~~d~--~g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         90 SVEPGRRLIIEGVGSLTAA---NVALASL--LGEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             EeCCCCeEEEEehhhccHH---HHHHhcc--CCCEEEEEEECCHHHHHHHHHhcC
Confidence            1112345778886333222   2222211  112389999999999999999984

>smart00072 GuKc Guanylate kinase homologues

Probab=99.30  E-value=1.1e-11  Score=97.91  Aligned_cols=163  Identities=23%  Similarity=0.237  Sum_probs=96.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC--cc--eeehHHHHHHHHHcCCchH----HHHHHHHHcCCCCCHH--------H
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC--LC--HLATGDMLRSAVAAKTPLG----IKAKEAMDKGELVSDD--------L   94 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~--~~--~i~~~~li~~~~~~~~~~~----~~i~~~l~~~~~~~~~--------~   94 (245)
                      +..|+|+||+||||+|+++.|.+.+.  +.  +..+..-.+.....+..+.    ..+...++.|..++..        +
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            45789999999999999999998862  22  2222111111101112222    4555666666554321        2


Q ss_pred             HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEe-cCHHHHHHHHhCCcccCCCCccccccCC
Q 025970           95 VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFA-IDDSILEERITGRWIHPASGRSYHTKFA  173 (245)
Q Consensus        95 ~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~-~~~e~~~~R~~~r~~~~~~~~~y~~~~~  173 (245)
                      ....+...+..   ++.+|+|..|....+...       ....| ++||+. .+.+++.+|+..|.              
T Consensus        82 ~~~~i~~~~~~---~~~~ild~~~~~~~~l~~-------~~~~~-~vIfi~~~s~~~l~~rl~~R~--------------  136 (184)
T smart00072       82 SKETIRQVAEQ---GKHCLLDIDPQGVKQLRK-------AQLYP-IVIFIAPPSSEELERRLRGRG--------------  136 (184)
T ss_pred             CHHHHHHHHHc---CCeEEEEECHHHHHHHHH-------hCCCc-EEEEEeCcCHHHHHHHHHhcC--------------
Confidence            22234444432   467899988766655442       12333 789998 56677999998763              


Q ss_pred             CCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          174 PPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       174 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                         +++.+.+.+|+........    .+... . ..|.++ +.++.+..+.++|.
T Consensus       137 -------------------~~~~~~i~~rl~~a~~~~~----~~~~f-d-~~I~n~-~l~~~~~~l~~~i~  181 (184)
T smart00072      137 -------------------TETAERIQKRLAAAQKEAQ----EYHLF-D-YVIVND-DLEDAYEELKEILE  181 (184)
T ss_pred             -------------------CCCHHHHHHHHHHHHHHHh----hhccC-C-EEEECc-CHHHHHHHHHHHHH
Confidence                               5567788888886544332    22111 2 334433 78999999988875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.28  E-value=2.2e-10  Score=89.80  Aligned_cols=121  Identities=12%  Similarity=0.133  Sum_probs=66.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcc--eeehHHHHHHHHHcCCchHHHHHHHHH-cC--CCCCHH---HHHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLC--HLATGDMLRSAVAAKTPLGIKAKEAMD-KG--ELVSDD---LVVGIIDQA  102 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~-~~--~~~~~~---~~~~~l~~~  102 (245)
                      +.+|+|.|+|||||||+++.|++.++..  +++.|++.......... .   ...+. ++  ...+..   .....+...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~   77 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-A---EGGIEFDGDGGVSPGPEFRLLEGAWYEA   77 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-c---ccccccCccCCcccchHHHHHHHHHHHH
Confidence            4589999999999999999999998654  45776665432110000 0   00000 00  111111   122222222


Q ss_pred             HcC-CCCCCceEEcCCCC-CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          103 MKK-PSCEKGFILDGFPR-TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       103 l~~-~~~~~~~iidg~p~-~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      +.. ...+..+|+|.... .......+..+   . ..+-..|+++||.+++.+|...|.
T Consensus        78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~---~-~~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227          78 VAAMARAGANVIADDVFLGRAALQDCWRSF---V-GLDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             HHHHHhCCCcEEEeeeccCCHHHHHHHHHh---c-CCCEEEEEEECCHHHHHHHHHhcC
Confidence            221 22346788886422 22222333322   1 234589999999999999999874

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.26  E-value=3.7e-10  Score=86.70  Aligned_cols=177  Identities=17%  Similarity=0.116  Sum_probs=106.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH-HHHcC--
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID-QAMKK--  105 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~--  105 (245)
                      .++.+|++.|..+|||||+|..|.+.+.-.+-.  ..+-+..+..+..|+.|..++++...+|+..+.-+.. +++..  
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~--~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLDP--AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHHhccCh--HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            577899999999999999999999888322221  2233444567889999999999888777776554332 11111  


Q ss_pred             -----CCCCCceEEcCCCCCHHH---HHHHHH-HHHh---cCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCC
Q 025970          106 -----PSCEKGFILDGFPRTVVQ---AEKLDE-MLEK---QGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFA  173 (245)
Q Consensus       106 -----~~~~~~~iidg~p~~~~~---~~~l~~-~~~~---~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~  173 (245)
                           +..+..+|+|.|-..-..   +..+.. ++..   --++||+++||++|++.+.+| .+...             
T Consensus        81 ~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~r-ggfG~-------------  146 (208)
T KOG3327|consen   81 LIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARR-GGFGE-------------  146 (208)
T ss_pred             HHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHh-cCcch-------------
Confidence                 112334677765332211   111110 1111   126999999999999995554 33320             


Q ss_pred             CCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          174 PPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       174 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                        ........+.+...+++...     -.....++++|++.+.+++++.|..+++
T Consensus       147 ------------------Erye~v~fqekv~~~~q~l~-----r~e~~~~~~vDAs~sve~V~~~V~~i~e  194 (208)
T KOG3327|consen  147 ------------------ERYETVAFQEKVLVFFQKLL-----RKEDLNWHVVDASKSVEKVHQQVRSLVE  194 (208)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHH-----hccCCCeEEEecCccHHHHHHHHHHHHH
Confidence                              11223334444333332222     0122368999999999999999976553

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.22  E-value=6.8e-10  Score=87.70  Aligned_cols=40  Identities=30%  Similarity=0.508  Sum_probs=37.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV   70 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~   70 (245)
                      .++|.|-||.||||||+|+.||++||+.+++++.+.|...
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a   43 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA   43 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence            3799999999999999999999999999999999988743

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.21  E-value=3.6e-10  Score=101.47  Aligned_cols=41  Identities=32%  Similarity=0.502  Sum_probs=38.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA   69 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~   69 (245)
                      .++++|+|.|++||||||+++.|++++|+.+++.+.+.|..
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            37789999999999999999999999999999999988874

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.21  E-value=7.4e-10  Score=87.00  Aligned_cols=160  Identities=15%  Similarity=0.185  Sum_probs=85.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcc----eeehHHHHHHHHHcCCch----HHHHHHHHHcCCCC--------CHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLC----HLATGDMLRSAVAAKTPL----GIKAKEAMDKGELV--------SDDLV   95 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~----~i~~~~li~~~~~~~~~~----~~~i~~~l~~~~~~--------~~~~~   95 (245)
                      .+|+|+|++||||||+++.|+..++..    ++.. .+-+.....+..+    ...+......+...        .....
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRR-VITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP   80 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeE-EcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence            478999999999999999999887532    2110 0000000001110    01111111122110        00011


Q ss_pred             HHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCC
Q 025970           96 VGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPP  175 (245)
Q Consensus        96 ~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p  175 (245)
                      . .+...+.   .+..+|+++..   .....+.+.     .....+|+|++|.+++.+|+..|.                
T Consensus        81 ~-~i~~~~~---~g~~vv~~g~~---~~~~~~~~~-----~~~~~~i~l~~~~~~~~~Rl~~R~----------------  132 (179)
T TIGR02322        81 A-EIDQWLE---AGDVVVVNGSR---AVLPEARQR-----YPNLLVVNITASPDVLAQRLAARG----------------  132 (179)
T ss_pred             H-HHHHHHh---cCCEEEEECCH---HHHHHHHHH-----CCCcEEEEEECCHHHHHHHHHHcC----------------
Confidence            1 1222222   23457788752   112222211     123479999999999999999874                


Q ss_pred             CCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          176 KVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       176 ~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                       ..+.+.+..++..+.....       ....++.++++.++++++..|.+.+.
T Consensus       133 -----------------~~~~~~~~~rl~~~~~~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       133 -----------------RESREEIEERLARSARFAA-------APADVTTIDNSGSLEVAGETLLRLLR  177 (179)
T ss_pred             -----------------CCCHHHHHHHHHHHhhccc-------ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence                             1124566666643221110       22246678888999999999998875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.20  E-value=3e-10  Score=91.50  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLR   67 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~   67 (245)
                      .++.+|.|.|++||||||+++.|++.++   +.+++.|+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~   45 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK   45 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence            5788999999999999999999999983   45677776543

>PRK06696 uridine kinase; Validated

Probab=99.19  E-value=1.5e-10  Score=94.22  Aligned_cols=54  Identities=19%  Similarity=0.190  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHhcc-CCCCCcEEEEECCCCCChhHHHHHHHhHh---Ccc--eeehHHHHH
Q 025970           14 VDMMTELLRRFKC-SSKPDKRLVLIGPPGSGKGTQSPVIKDEY---CLC--HLATGDMLR   67 (245)
Q Consensus        14 ~~~~~~~~~~~~~-~~~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~--~i~~~~li~   67 (245)
                      .+++.+++..+.. .+.+|.+|+|.|++||||||+|+.|++.+   |..  ++++|++..
T Consensus         4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696          4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            4567788877764 55678999999999999999999999999   544  445777653

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.16  E-value=1.9e-11  Score=89.69  Aligned_cols=34  Identities=26%  Similarity=0.582  Sum_probs=31.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDML   66 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li   66 (245)
                      +|+|.|+|||||||+|+.|++.+|++++++|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            5899999999999999999999999999999953

...

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.16  E-value=9.6e-10  Score=86.15  Aligned_cols=111  Identities=12%  Similarity=0.031  Sum_probs=62.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCC-chHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKT-PLGIKAKEAMDKGELVSDDLVVGIIDQA  102 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~l~~~  102 (245)
                      .+|.+|+|.|+|||||||+++.|++.++     ..+++.+.+ ++.+.... .......          .......+...
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~-r~~~~~~~~~~~~~~~----------~~~~~~~l~~~   73 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL-REILGHYGYDKQSRIE----------MALKRAKLAKF   73 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH-HhhcCCCCCCHHHHHH----------HHHHHHHHHHH
Confidence            4678999999999999999999999885     567766543 43222100 0000000          00111112222


Q ss_pred             HcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970          103 MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG  157 (245)
Q Consensus       103 l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~  157 (245)
                      +.  ..+..+|+|+... ......+...   . ..+.++|+|++|++++.+|+..
T Consensus        74 l~--~~g~~VI~~~~~~-~~~~~~~~~~---~-~~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         74 LA--DQGMIVIVTTISM-FDEIYAYNRK---H-LPNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             HH--hCCCEEEEEeCCc-HHHHHHHHHh---h-cCCeEEEEEeCCHHHHHHhchh
Confidence            22  1234577776532 2111111111   1 3345799999999999999753

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.15  E-value=5.5e-10  Score=86.49  Aligned_cols=154  Identities=17%  Similarity=0.197  Sum_probs=85.1

Q ss_pred             ECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH---HHHHHHHHHHcC--CCCCCc
Q 025970           37 IGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD---LVVGIIDQAMKK--PSCEKG  111 (245)
Q Consensus        37 ~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~l~~~l~~--~~~~~~  111 (245)
                      +|++||||||+++.|++.+|..+++.|.+.....         +.. ...|....+.   .....+......  ......
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS   70 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence            5999999999999999999999998865421100         000 0011111110   011111111100  112234


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      +|+..+. ...+...+.    .. ..+-.+|+|+||++++.+|+..|..+                              
T Consensus        71 viv~s~~-~~~~r~~~~----~~-~~~~~~v~l~a~~~~l~~Rl~~R~~~------------------------------  114 (163)
T PRK11545         71 LIVCSAL-KKHYRDLLR----EG-NPNLSFIYLKGDFDVIESRLKARKGH------------------------------  114 (163)
T ss_pred             EEEEecc-hHHHHHHHH----cc-CCCEEEEEEECCHHHHHHHHHhccCC------------------------------
Confidence            5554332 222332222    23 33458999999999999999999521                              


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      . .+.+.+..++..+....       .....++.||++.+++++...+...+.
T Consensus       115 ~-a~~~vl~~Q~~~~ep~~-------~~e~~~~~id~~~~~~~~~~~~~~~~~  159 (163)
T PRK11545        115 F-FKTQMLVTQFETLQEPG-------ADETDVLVVDIDQPLEGVVASTIEVIK  159 (163)
T ss_pred             C-CCHHHHHHHHHHcCCCC-------CCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence            0 13445555444332111       111247889999999999988887764

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.14  E-value=2e-09  Score=86.40  Aligned_cols=166  Identities=16%  Similarity=0.225  Sum_probs=88.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc---CCc----hHHHHHHHHHcCCCCC-----HHH--
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA---KTP----LGIKAKEAMDKGELVS-----DDL--   94 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~---~~~----~~~~i~~~l~~~~~~~-----~~~--   94 (245)
                      .++.+|+|.|++||||||+++.|+..++..++......++....   +..    -...+...+..+..+.     ...  
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~   82 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG   82 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence            35679999999999999999999998763333222221110000   000    0122222222222110     000  


Q ss_pred             -HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCC
Q 025970           95 -VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFA  173 (245)
Q Consensus        95 -~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~  173 (245)
                       ....+...+..   +..+|+|.-+..   ...+...   . ..+-.++++.++.+++.+|+..|.              
T Consensus        83 ~~~~~i~~~l~~---g~~vi~dl~~~g---~~~l~~~---~-~~~~~I~i~~~s~~~l~~Rl~~R~--------------  138 (205)
T PRK00300         83 TPRSPVEEALAA---GKDVLLEIDWQG---ARQVKKK---M-PDAVSIFILPPSLEELERRLRGRG--------------  138 (205)
T ss_pred             CcHHHHHHHHHc---CCeEEEeCCHHH---HHHHHHh---C-CCcEEEEEECcCHHHHHHHHHhcC--------------
Confidence             11122222221   334566654322   2222221   2 223334555677899999999873              


Q ss_pred             CCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          174 PPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       174 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                         +++.+.+++|+..+......    +...+ ++.+  +.+++++...|.+++.
T Consensus       139 -------------------~~~~~~i~~rl~~~~~~~~~----~~~~d-~vi~--n~~~e~~~~~l~~il~  183 (205)
T PRK00300        139 -------------------TDSEEVIARRLAKAREEIAH----ASEYD-YVIV--NDDLDTALEELKAIIR  183 (205)
T ss_pred             -------------------CCCHHHHHHHHHHHHHHHHh----HHhCC-EEEE--CCCHHHHHHHHHHHHH
Confidence                               45678889999888765533    22223 3344  3489999999988775

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.13  E-value=1.3e-09  Score=99.68  Aligned_cols=125  Identities=18%  Similarity=0.112  Sum_probs=71.0

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc------ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL------CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD   92 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~------~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~   92 (245)
                      ++.+-|.....++.+|+|+|.|||||||+++.|++.++.      .+++.|.+ ++.+..+..+...-+          .
T Consensus       380 iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v-r~~l~ge~~f~~~er----------~  448 (568)
T PRK05537        380 ELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV-RKHLSSELGFSKEDR----------D  448 (568)
T ss_pred             HHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH-HHhccCCCCCCHHHH----------H
Confidence            444444445567889999999999999999999999985      77877544 543332111111000          0


Q ss_pred             HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970           93 DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT  156 (245)
Q Consensus        93 ~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~  156 (245)
                      .+...+....-.-...+.++|++..............++...+  .-++|+|++|.+++.+|..
T Consensus       449 ~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g--~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        449 LNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG--GFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC--CEEEEEEcCCHHHHHHhcc
Confidence            1111111111111123456677753222223344444554433  1258999999999999963

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.13  E-value=7.1e-10  Score=85.76  Aligned_cols=161  Identities=19%  Similarity=0.224  Sum_probs=90.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCch--------HHHHHHHHHcCCCCCHH--------
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPL--------GIKAKEAMDKGELVSDD--------   93 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~--------~~~i~~~l~~~~~~~~~--------   93 (245)
                      ++.+|+|+||+|+||||++++|-+.. -..+|++...|.. .++..-        .+.+.+++..+..+...        
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence            67899999999999999999999998 4445554443321 111111        23444444444332110        


Q ss_pred             HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCH-HHHHHHHhCCcccCCCCccccccC
Q 025970           94 LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDD-SILEERITGRWIHPASGRSYHTKF  172 (245)
Q Consensus        94 ~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~-e~~~~R~~~r~~~~~~~~~y~~~~  172 (245)
                      ....-+...+.   .+..+|+|--   +.-+..+...     ....+.||+.+|. +++.+|+.+|              
T Consensus        81 T~~~~ve~~~~---~G~~vildId---~qGa~qvk~~-----~p~~v~IFi~pPs~eeL~~RL~~R--------------  135 (191)
T COG0194          81 TSREPVEQALA---EGKDVILDID---VQGALQVKKK-----MPNAVSIFILPPSLEELERRLKGR--------------  135 (191)
T ss_pred             CcHHHHHHHHh---cCCeEEEEEe---hHHHHHHHHh-----CCCeEEEEEcCCCHHHHHHHHHcc--------------
Confidence            11111122221   1234555421   1222222111     2234566666544 6777777776              


Q ss_pred             CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          173 APPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       173 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                         ..++.+.+.+|+...+.......+|     .++++|  .+.+..++.+..++
T Consensus       136 -------------------gtds~e~I~~Rl~~a~~Ei~~~~~f-----dyvivN--dd~e~a~~~l~~ii  180 (191)
T COG0194         136 -------------------GTDSEEVIARRLENAKKEISHADEF-----DYVIVN--DDLEKALEELKSII  180 (191)
T ss_pred             -------------------CCCCHHHHHHHHHHHHHHHHHHHhC-----CEEEEC--ccHHHHHHHHHHHH
Confidence                               4778899999999988877655542     355554  66777787777765

>PRK07667 uridine kinase; Provisional

Probab=99.12  E-value=5e-10  Score=89.14  Aligned_cols=51  Identities=22%  Similarity=0.182  Sum_probs=39.5

Q ss_pred             HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHH
Q 025970           18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRS   68 (245)
Q Consensus        18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~   68 (245)
                      ++++..+......+.+|.|.|++||||||+++.|++.++     ..+++.|++...
T Consensus         4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~   59 (193)
T PRK07667          4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE   59 (193)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence            345555555445568999999999999999999999873     558888887654

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.12  E-value=3.2e-09  Score=83.20  Aligned_cols=112  Identities=20%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh---CcceeehHH-HHHHHHHcCCch---HHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGD-MLRSAVAAKTPL---GIKAKEAMDKGELVSDDLVVGIIDQAMK  104 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~-li~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~~~~l~~~l~  104 (245)
                      +.|+++|.|||||||+|+.|++.+   ++.+++... ..+-... +..+   .+..++.+       ......++..++.
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~-DEslpi~ke~yres~-------~ks~~rlldSalk   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILW-DESLPILKEVYRESF-------LKSVERLLDSALK   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheec-ccccchHHHHHHHHH-------HHHHHHHHHHHhc
Confidence            478999999999999999999988   333332221 1111000 1111   11111111       1222335555544


Q ss_pred             CCCCCCceEEcCC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          105 KPSCEKGFILDGF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       105 ~~~~~~~~iidg~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                          +.-+|+|..  .......  |.....+. ..+-.+||+.+|.+++++|=..|
T Consensus        74 ----n~~VIvDdtNYyksmRrq--L~ceak~~-~tt~ciIyl~~plDtc~rrN~er  122 (261)
T COG4088          74 ----NYLVIVDDTNYYKSMRRQ--LACEAKER-KTTWCIIYLRTPLDTCLRRNRER  122 (261)
T ss_pred             ----ceEEEEecccHHHHHHHH--HHHHHHhc-CCceEEEEEccCHHHHHHhhccC
Confidence                335666653  2222222  22122223 34568999999999999986544

>TIGR00017 cmk cytidylate kinase

Probab=99.09  E-value=4.8e-09  Score=84.91  Aligned_cols=39  Identities=26%  Similarity=0.476  Sum_probs=35.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA   69 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~   69 (245)
                      +++|.|.|++||||||+++.|++++++.+++.+.+.+..
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            368999999999999999999999999999999887764

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.09  E-value=8.1e-09  Score=78.28  Aligned_cols=120  Identities=20%  Similarity=0.182  Sum_probs=68.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      +++++++|.||+||||+++.+.+.+ ++..++.++++-+......-  -..++.+.   -+|.+....+...+.......
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~gl--ve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~   78 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGL--VEHRDEMR---KLPLENQRELQAEAAKRIAEM   78 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCC--cccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999 88889999988764332110  01112222   233333333322222221111


Q ss_pred             Cc-eEEcCCCCCHH---HHHHHH-HHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970          110 KG-FILDGFPRTVV---QAEKLD-EMLEKQGTKIDKVLNFAIDDSILEERITG  157 (245)
Q Consensus       110 ~~-~iidg~p~~~~---~~~~l~-~~~~~~~~~~~~vi~L~~~~e~~~~R~~~  157 (245)
                      .. .|+|++..-..   +..-+- |.+..  ..||.++.|.+++++++.|=.+
T Consensus        79 ~~~iivDtH~~IkTP~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~  129 (189)
T COG2019          79 ALEIIVDTHATIKTPAGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLR  129 (189)
T ss_pred             hhceEEeccceecCCCccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhc
Confidence            11 66765422110   000000 11111  6899999999999988877443

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.08  E-value=1.4e-09  Score=98.01  Aligned_cols=105  Identities=14%  Similarity=0.153  Sum_probs=80.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS  107 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~  107 (245)
                      +..+.+|++.|+|||||||+++.++...|+.+++.|.+-.                        .......+...+   .
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L---~  418 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERAL---D  418 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHH---h
Confidence            3567899999999999999999999999999999986511                        011222233333   2


Q ss_pred             CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      .+..+|+|.--....++..+.++...++.. ..++++++|.+++.+|...|..
T Consensus       419 ~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~-v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       419 QGKRCAIDNTNPDAASRAKFLQCARAAGIP-CRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHcCCe-EEEEEeCCCHHHHHHHHHhhcc
Confidence            356799998877777888888777777664 4789999999999999998853

Note that the EC number for the kinase function is: 2.7.1.78

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.08  E-value=3.6e-09  Score=86.17  Aligned_cols=39  Identities=33%  Similarity=0.557  Sum_probs=36.1

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA   69 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~   69 (245)
                      +++|+|.|++||||||+++.|++++|+.+++.+.++|..
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~   42 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV   42 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence            479999999999999999999999999999999987763

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.07  E-value=2.3e-09  Score=84.72  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=91.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCc--------hHHHHHHHHHcCCCCCH--------
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTP--------LGIKAKEAMDKGELVSD--------   92 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~--------~~~~i~~~l~~~~~~~~--------   92 (245)
                      .+|++|+|+||+||||||+++.|.+.+.-.+++....-|.. .++..        --..+...+..|..+..        
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y   80 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY   80 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence            46789999999999999999999988743333332222210 00100        01233344444433221        


Q ss_pred             HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecC-HHHHHHHHhCCcccCCCCcccccc
Q 025970           93 DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID-DSILEERITGRWIHPASGRSYHTK  171 (245)
Q Consensus        93 ~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~-~e~~~~R~~~r~~~~~~~~~y~~~  171 (245)
                      .+-...+...+..   ++.+|+|--+....+   +...   . ..+-++||+..| .+++.+|+..|.            
T Consensus        81 Gt~~~~i~~~~~~---g~~~i~d~~~~g~~~---l~~~---~-~~~~~~Ifi~pps~e~l~~RL~~R~------------  138 (186)
T PRK14737         81 GTPKAFIEDAFKE---GRSAIMDIDVQGAKI---IKEK---F-PERIVTIFIEPPSEEEWEERLIHRG------------  138 (186)
T ss_pred             cCcHHHHHHHHHc---CCeEEEEcCHHHHHH---HHHh---C-CCCeEEEEEECCCHHHHHHHHHhcC------------
Confidence            1122222333322   345677754333333   2221   1 111268888874 688999998774            


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          172 FAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       172 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                           ..+.+.++.|+........     +.....+ +|+++ ++++....|.++|.
T Consensus       139 ---------------------~~s~e~i~~Rl~~~~~e~~-----~~~~~D~-vI~N~-dle~a~~ql~~ii~  183 (186)
T PRK14737        139 ---------------------TDSEESIEKRIENGIIELD-----EANEFDY-KIIND-DLEDAIADLEAIIC  183 (186)
T ss_pred             ---------------------CCCHHHHHHHHHHHHHHHh-----hhccCCE-EEECc-CHHHHHHHHHHHHh
Confidence                                 4466788888876433221     1111123 34444 89999999998875

>COG0645 Predicted kinase [General function prediction only]

Probab=99.07  E-value=7.7e-09  Score=78.82  Aligned_cols=122  Identities=16%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD---DLVVGIIDQAMKKPSC  108 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~l~~~l~~~~~  108 (245)
                      .++++.|.||+||||+++.|++.+|..+|..|.+ ++.+.. -+....    ...|-..+.   .....+......-+..
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-rk~L~g-~p~~~r----~~~g~ys~~~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-RKRLFG-VPEETR----GPAGLYSPAATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-HHHhcC-Cccccc----CCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999655 454443 000000    001111111   1122222222222334


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      +..+|+|+..-...+...........+.. -..|.++++.+++..|+..|..
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~-~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVA-FVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCc-eEEEEcCCcHHHHHHHHHHhCC
Confidence            56799998766666666666555555443 4789999999999999999973

>PRK12338 hypothetical protein; Provisional

Probab=99.06  E-value=1.4e-08  Score=85.96  Aligned_cols=43  Identities=21%  Similarity=0.307  Sum_probs=37.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA   72 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~   72 (245)
                      +|.+|+|.|+|||||||+|+.||+.+|+.++..++.+++.+..
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            5789999999999999999999999999988667888886553

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.06  E-value=2.5e-08  Score=83.84  Aligned_cols=100  Identities=15%  Similarity=0.221  Sum_probs=57.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK-PSC  108 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~-~~~  108 (245)
                      ...+|+|+|++||||||+++.|. ..|+..++.-.                           ..++..++...... ...
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~---------------------------~~L~~~l~~~~~~~~~~~   56 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLP---------------------------PSLLPKLVELLAQSGGIR   56 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcC---------------------------HHHHHHHHHHHHhcCCCC
Confidence            34589999999999999999996 45877664311                           11222222211111 111


Q ss_pred             CCceEEcCCCCCH-HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          109 EKGFILDGFPRTV-VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       109 ~~~~iidg~p~~~-~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                      .-.+++|-..... .........+...+. ...+|||+++++++.+|+..+
T Consensus        57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~-~~~iI~L~a~~e~L~~Rl~~~  106 (288)
T PRK05416         57 KVAVVIDVRSRPFFDDLPEALDELRERGI-DVRVLFLDASDEVLIRRYSET  106 (288)
T ss_pred             CeEEEEccCchhhHHHHHHHHHHHHHcCC-cEEEEEEECCHHHHHHHHhhc
Confidence            2245566432221 122222223334433 346899999999999999753

>TIGR00235 udk uridine kinase

Probab=99.04  E-value=1.7e-09  Score=87.00  Aligned_cols=41  Identities=17%  Similarity=0.207  Sum_probs=34.1

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHH
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDML   66 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li   66 (245)
                      |.++++.+|+|.|++||||||+++.|+..++   ..+++.|+..
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~   44 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY   44 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence            4678889999999999999999999998875   4566766543

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.02  E-value=4.5e-09  Score=82.26  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=30.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDM   65 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~l   65 (245)
                      ++.+|+|.|+|||||||+++.|+..+.     +.+++.|.+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            567999999999999999999999872     567777655

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.99  E-value=1.4e-08  Score=80.11  Aligned_cols=112  Identities=15%  Similarity=0.095  Sum_probs=63.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAM  103 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l  103 (245)
                      .++.+|+|.|++||||||+++.|+..+   |  ..+++.+.+ ++.+..+..+...-.          ...+..+.....
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~-r~~l~~~~~~~~~~~----------~~~~~~~~~~~~   84 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV-RHGLNKDLGFSEEDR----------KENIRRIGEVAK   84 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH-HhhhccccCCCHHHH----------HHHHHHHHHHHH
Confidence            567899999999999999999999887   2  456666543 332221111100000          011111111111


Q ss_pred             cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970          104 KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER  154 (245)
Q Consensus       104 ~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R  154 (245)
                      .....+..+|+|.......+...+......   .+-.+|+|++|.+++.+|
T Consensus        85 ~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~---~~~~~v~l~~~~e~~~~R  132 (184)
T TIGR00455        85 LFVRNGIIVITSFISPYRADRQMVRELIEK---GEFIEVFVDCPLEVCEQR  132 (184)
T ss_pred             HHHcCCCEEEEecCCCCHHHHHHHHHhCcC---CCeEEEEEeCCHHHHHHh
Confidence            112234567777654444454444443221   244789999999999998

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.98  E-value=3.4e-08  Score=92.52  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=38.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA   69 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~   69 (245)
                      .++.++|.|.||+||||||+++.|++++|+.+++++.+.|..
T Consensus       439 ~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        439 ADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             ccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            345679999999999999999999999999999999998875

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.97  E-value=4.4e-09  Score=77.57  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=55.0

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCCCCCC
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID---QAMKKPSCEK  110 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~---~~l~~~~~~~  110 (245)
                      |+|.|+|||||||+++.|++.++..+.+      ............-.................++.   ..........
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIRD------IAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGR   74 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHHH------HHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHHH------HHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence            7899999999999999999998222211      111111100000000011122222332222222   2211112345


Q ss_pred             ceEEcCCCCCHHHHHHHHHHHHhcCCCccEE-EEEecCHHHHHHHHhCCc
Q 025970          111 GFILDGFPRTVVQAEKLDEMLEKQGTKIDKV-LNFAIDDSILEERITGRW  159 (245)
Q Consensus       111 ~~iidg~p~~~~~~~~l~~~~~~~~~~~~~v-i~L~~~~e~~~~R~~~r~  159 (245)
                      .+|+|+........           ...... |+|+||++++.+|+..|.
T Consensus        75 ~~iid~~~~~~~~~-----------~~~~~~~i~L~~~~e~~~~R~~~R~  113 (129)
T PF13238_consen   75 NIIIDGILSNLELE-----------RLFDIKFIFLDCSPEELRKRLKKRG  113 (129)
T ss_dssp             CEEEEESSEEECET-----------TEEEESSEEEE--HHHHHHHHHCTT
T ss_pred             cEEEecccchhccc-----------ccceeeEEEEECCHHHHHHHHHhCC
Confidence            67888874332110           112223 999999999999999986

...

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.97  E-value=9.9e-09  Score=82.02  Aligned_cols=113  Identities=15%  Similarity=0.125  Sum_probs=62.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ  101 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~  101 (245)
                      -+.+|.+|+|+|++||||||+++.|+..+     +..+++.|.+- +.+.....+.        ...  ....+..+...
T Consensus        20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~--------~~~--~~~~~~~l~~~   88 (198)
T PRK03846         20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS--------DAD--RKENIRRVGEV   88 (198)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC--------ccc--HHHHHHHHHHH
Confidence            44678899999999999999999999876     35666665543 2211100000        000  01222222111


Q ss_pred             HHcCCCCCCceEEcCCCC-CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970          102 AMKKPSCEKGFILDGFPR-TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER  154 (245)
Q Consensus       102 ~l~~~~~~~~~iidg~p~-~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R  154 (245)
                      . .........|+..+.. .......+..++...   .-++|||++|.+++.+|
T Consensus        89 a-~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~---~~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         89 A-KLMVDAGLVVLTAFISPHRAERQMVRERLGEG---EFIEVFVDTPLAICEAR  138 (198)
T ss_pred             H-HHHhhCCCEEEEEeCCCCHHHHHHHHHHcccC---CEEEEEEcCCHHHHHhc
Confidence            1 1111122344555544 335555555554322   22479999999999999

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.96  E-value=3.6e-09  Score=83.07  Aligned_cols=164  Identities=17%  Similarity=0.190  Sum_probs=87.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCH--------HHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA---KTP----LGIKAKEAMDKGELVSD--------DLV   95 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~---~~~----~~~~i~~~l~~~~~~~~--------~~~   95 (245)
                      +.+|+|.||+||||||+++.|+..++..++......++....   +..    -...+...+..+..+..        ...
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   80 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP   80 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence            358999999999999999999987755544432222211000   000    01122222233322211        011


Q ss_pred             HHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCC
Q 025970           96 VGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPP  175 (245)
Q Consensus        96 ~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p  175 (245)
                      ...+...+..   +..+|+|.-   ......+...   . ..+..++++..+.+.+.+|+..|.                
T Consensus        81 ~~~i~~~~~~---g~~vi~d~~---~~~~~~~~~~---~-~~~~~i~~~~~~~e~~~~Rl~~r~----------------  134 (180)
T TIGR03263        81 KSPVEEALAA---GKDVLLEID---VQGARQVKKK---F-PDAVSIFILPPSLEELERRLRKRG----------------  134 (180)
T ss_pred             HHHHHHHHHC---CCeEEEECC---HHHHHHHHHh---C-CCcEEEEEECCCHHHHHHHHHHcC----------------
Confidence            2223333322   345777743   2222222222   1 234355555777899999998763                


Q ss_pred             CCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          176 KVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       176 ~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                       +++.+.+++|+..+......     .....++.++  .+.+++...|.+.+.
T Consensus       135 -----------------~~~~~~i~~rl~~~~~~~~~-----~~~~d~~i~n--~~~~~~~~~l~~~~~  179 (180)
T TIGR03263       135 -----------------TDSEEVIERRLAKAKKEIAH-----ADEFDYVIVN--DDLEKAVEELKSIIL  179 (180)
T ss_pred             -----------------CCCHHHHHHHHHHHHHHHhc-----cccCcEEEEC--CCHHHHHHHHHHHHh
Confidence                             44567888888776543221     1112344444  378999999988764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PHA03132 thymidine kinase; Provisional

Probab=98.95  E-value=1.1e-08  Score=92.58  Aligned_cols=130  Identities=13%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC--CCC-HHHHH----------
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE--LVS-DDLVV----------   96 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~-~~~~~----------   96 (245)
                      +.++|+|.|+.||||||+++.|++.+|..++.+.+=+..+..-.+..+..+.+.+.++.  .+. ...+.          
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf  335 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF  335 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence            37899999999999999999999988554443311110000001234566666554332  111 11111          


Q ss_pred             HHHHHHHcC-----------CCCCCceEEcCCCCCHHH-------------HHHHHHHHHhcC-CCccEEEEEecCHHHH
Q 025970           97 GIIDQAMKK-----------PSCEKGFILDGFPRTVVQ-------------AEKLDEMLEKQG-TKIDKVLNFAIDDSIL  151 (245)
Q Consensus        97 ~~l~~~l~~-----------~~~~~~~iidg~p~~~~~-------------~~~l~~~~~~~~-~~~~~vi~L~~~~e~~  151 (245)
                      ..+..+...           ...+..+|.|.++.....             ...+..++.... ..||++|||+++++++
T Consensus       336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a  415 (580)
T PHA03132        336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN  415 (580)
T ss_pred             HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence            001111111           122345677877644321             011222322221 3589999999999999


Q ss_pred             HHHHhCCc
Q 025970          152 EERITGRW  159 (245)
Q Consensus       152 ~~R~~~r~  159 (245)
                      ++|+.+|.
T Consensus       416 lkRIkkRg  423 (580)
T PHA03132        416 LRRVKKRG  423 (580)
T ss_pred             HHHHHhcC
Confidence            99999985

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=98.91  E-value=1.6e-07  Score=76.71  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=29.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ...++|++.|+.|||||++|+.||+++|+.++-
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP  101 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFP  101 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccc
Confidence            346799999999999999999999999987764

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.91  E-value=5.8e-09  Score=81.16  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHHHHHHHcC-C---c---------hHHHHHHHHHcCCCCCHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDMLRSAVAAK-T---P---------LGIKAKEAMDKGELVSDDLVV   96 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li~~~~~~~-~---~---------~~~~i~~~l~~~~~~~~~~~~   96 (245)
                      .+|+|.|++-|||||+++.|++.+.  +.+++.|.++....... .   .         .+...            ..+.
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~~~   69 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLF------------RRLY   69 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHH------------HHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHH------------HHHH
Confidence            5899999999999999999999995  45788887765422110 0   0         00111            1122


Q ss_pred             HHHHHHHcC-CCCCCceEEcCCCCCHHH-HHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           97 GIIDQAMKK-PSCEKGFILDGFPRTVVQ-AEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        97 ~~l~~~l~~-~~~~~~~iidg~p~~~~~-~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ..+...+.. ...+..+|+|........ ...+..++.   ..+-+.|-+.||.+++.+|-..|.
T Consensus        70 ~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~---~~~vl~VgV~Cpleil~~RE~~Rg  131 (174)
T PF07931_consen   70 AAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA---GLPVLFVGVRCPLEILERRERARG  131 (174)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT---TS-EEEEEEE--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhC---CCceEEEEEECCHHHHHHHHHhcC
Confidence            222222222 224567999987666554 444545553   345689999999999999988875

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.90  E-value=1.2e-08  Score=77.84  Aligned_cols=110  Identities=14%  Similarity=0.109  Sum_probs=58.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH--HHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI--IDQA  102 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--l~~~  102 (245)
                      +|.+|+|+|.+||||||+|+.|.+++     ...+++.|.+ +..+..+-.+...-+          .+.+..+  +...
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l-R~~l~~dl~fs~~dR----------~e~~rr~~~~A~l   69 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL-RHGLNADLGFSKEDR----------EENIRRIAEVAKL   69 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH-CTTTTTT--SSHHHH----------HHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch-hhccCCCCCCCHHHH----------HHHHHHHHHHHHH
Confidence            47899999999999999999999998     3557777544 433322211111000          0111111  1111


Q ss_pred             HcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970          103 MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI  155 (245)
Q Consensus       103 l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~  155 (245)
                      +..  .+..+|++..-............+..   ..-+-||++||.+++.+|=
T Consensus        70 l~~--~G~ivIva~isp~~~~R~~~R~~~~~---~~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   70 LAD--QGIIVIVAFISPYREDREWARELIPN---ERFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             HHH--TTSEEEEE----SHHHHHHHHHHHHT---TEEEEEEEES-HHHHHHHT
T ss_pred             HHh--CCCeEEEeeccCchHHHHHHHHhCCc---CceEEEEeCCCHHHHHHhC
Confidence            211  23345555443334444444444321   1348999999999999993

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.89  E-value=4.6e-09  Score=82.83  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLR   67 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~   67 (245)
                      +|.|.|++||||||+|+.|++.+ +..+|+.|++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence            47899999999999999999999 688999987754

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.89  E-value=2.5e-08  Score=79.62  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=29.3

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh---CcceeehHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDML   66 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li   66 (245)
                      +|.|.|++||||||+++.|+..+   +..+++.|++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            47899999999999999999987   46788888765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.86  E-value=1.5e-08  Score=80.92  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=69.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcc---eeehHHHHHHHHHc----------CCc-------hHHHHHHHHHcCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLC---HLATGDMLRSAVAA----------KTP-------LGIKAKEAMDKGE   88 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~---~i~~~~li~~~~~~----------~~~-------~~~~i~~~l~~~~   88 (245)
                      .++.+|.|.|++||||||+|+.|.+.++..   +|+.|+.....-..          +++       +.+.+ ..+..|+
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L-~~L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHL-KDLKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHH-HHHHcCC
Confidence            456899999999999999999999999854   77777665421110          011       01111 2233343


Q ss_pred             CCCHHHHHHHHHHHH---cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970           89 LVSDDLVVGIIDQAM---KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus        89 ~~~~~~~~~~l~~~l---~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      .+..-...-....+.   .......-+|++|+..-..  +.+.       ...|+-||++++.++++.|-..|..
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr-------~~~d~kIfvdtd~D~RliRri~RD~  150 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR-------DLMDLKIFVDTDADVRLIRRIKRDV  150 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHH-------hhcCEEEEEeCCccHHHHHHHHHHH
Confidence            321111100000111   0111235678899743322  1222       2458999999999998888777753

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.86  E-value=1e-08  Score=81.97  Aligned_cols=121  Identities=19%  Similarity=0.296  Sum_probs=69.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCC-------CHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV-------SDDLVVGI   98 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~   98 (245)
                      ..|..+++.|+|||||||++..+.+.+   ++.+|+.|++...+     +....+...  .....       -..+...+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~--~~~~~~~~~~~~a~~~~~~~   85 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKA--DPDEASELTQKEASRLAEKL   85 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence            678899999999999999999999987   78899998763221     111111110  00000       01233334


Q ss_pred             HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970           99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus        99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      +...+..   +..+|+|+..........+.+.+...|... .++++.+|++..+.|+..|..
T Consensus        86 ~~~a~~~---~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~~  143 (199)
T PF06414_consen   86 IEYAIEN---RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRYE  143 (199)
T ss_dssp             HHHHHHC---T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHHH
T ss_pred             HHHHHHc---CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHHH
Confidence            4444443   347899987666655554555666666654 678899999999999998863

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.85  E-value=1.5e-07  Score=80.64  Aligned_cols=126  Identities=17%  Similarity=0.110  Sum_probs=72.1

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC------cceeehHHHHHHHHHc---C---CchHH----HHHHHH-------HcCCC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC------LCHLATGDMLRSAVAA---K---TPLGI----KAKEAM-------DKGEL   89 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~------~~~i~~~~li~~~~~~---~---~~~~~----~i~~~l-------~~~~~   89 (245)
                      +++|+|+|||||||+++.|+..+.      +.+++.|+++......   +   ....+    .+..++       ..|..
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~   80 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE   80 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            368999999999999999998775      3489999988321111   0   01111    111111       12222


Q ss_pred             CCH------HHHHHHHH-------------------HHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEE
Q 025970           90 VSD------DLVVGIID-------------------QAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVL  142 (245)
Q Consensus        90 ~~~------~~~~~~l~-------------------~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi  142 (245)
                      ...      ......+.                   .++...  ....-+|+|........+..+..+....+..+ .+|
T Consensus        81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~-~~V  159 (340)
T TIGR03575        81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGF-CQL  159 (340)
T ss_pred             ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCE-EEE
Confidence            111      11111110                   111100  11124778876555555556666655555444 899


Q ss_pred             EEecCHHHHHHHHhCCc
Q 025970          143 NFAIDDSILEERITGRW  159 (245)
Q Consensus       143 ~L~~~~e~~~~R~~~r~  159 (245)
                      |+++|.+++.+|..+|.
T Consensus       160 ~ld~ple~~l~RN~~R~  176 (340)
T TIGR03575       160 FLDCPVESCLLRNKQRP  176 (340)
T ss_pred             EEeCCHHHHHHHHhcCC
Confidence            99999999999999885

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.85  E-value=6.1e-08  Score=80.89  Aligned_cols=110  Identities=17%  Similarity=0.114  Sum_probs=58.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHHHHcCC----chHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSAVAAKT----PLGIKAKEAMDKGELVSDDLVVGIIDQA  102 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~~~~~~----~~~~~i~~~l~~~~~~~~~~~~~~l~~~  102 (245)
                      ++|+|+|.|||||||+|+.|++.+     .+.+++.+.+.   +....    ..-+.++           ..+...+...
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~y~~~~~Ek~~R-----------~~l~s~v~r~   67 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRNDYADSKKEKEAR-----------GSLKSAVERA   67 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSSS--GGGHHHHH-----------HHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhhhhchhhhHHHH-----------HHHHHHHHHh
Confidence            378999999999999999999875     34566654443   11111    1111111           1222233333


Q ss_pred             HcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          103 MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       103 l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      +.   ...-+|+|+.---.-.+-.|-.+....+. ...+||++||.+.+++|=..|.
T Consensus        68 ls---~~~iVI~Dd~nYiKg~RYelyclAr~~~~-~~c~i~~~~~~e~~~~~N~~R~  120 (270)
T PF08433_consen   68 LS---KDTIVILDDNNYIKGMRYELYCLARAYGT-TFCVIYCDCPLETCLQRNSKRP  120 (270)
T ss_dssp             HT---T-SEEEE-S---SHHHHHHHHHHHHHTT--EEEEEEEE--HHHHHHHHHHTT
T ss_pred             hc---cCeEEEEeCCchHHHHHHHHHHHHHHcCC-CEEEEEECCCHHHHHHhhhccC
Confidence            32   23578888754444444444445455544 4589999999999999977774

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.85  E-value=4.7e-08  Score=74.55  Aligned_cols=109  Identities=13%  Similarity=0.090  Sum_probs=60.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH--HHHHcC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGII--DQAMKK  105 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l--~~~l~~  105 (245)
                      +++|.|.|||||||+++.|+..+   +.  .+++.|. ++..+.....+...        .  ....+..+.  ...+. 
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~-~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~-   68 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN-VRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLA-   68 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH-HHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHH-
Confidence            47899999999999999999998   53  4455544 34322211100000        0  011111111  11111 


Q ss_pred             CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970          106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG  157 (245)
Q Consensus       106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~  157 (245)
                       ..+..+|+|..-........+..++.   ..+..+|+|++|.+++.+|-..
T Consensus        69 -~~G~~VIid~~~~~~~~R~~~~~l~~---~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          69 -DAGLIVIAAFISPYREDREAARKIIG---GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             -hCCCEEEEccCCCCHHHHHHHHHhcC---CCCEEEEEEeCCHHHHHHhCch
Confidence             12345777765444444444444432   2455799999999999999554

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.84  E-value=7.6e-08  Score=90.92  Aligned_cols=38  Identities=29%  Similarity=0.423  Sum_probs=35.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA   69 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~   69 (245)
                      ++|+|.|||||||||+++.|++++|+.+++++.+.|..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            37999999999999999999999999999999988764

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.82  E-value=3.2e-07  Score=77.11  Aligned_cols=44  Identities=20%  Similarity=0.278  Sum_probs=35.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc-eeehHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC-HLATGDMLRSAVA   71 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~-~i~~~~li~~~~~   71 (245)
                      ..++|++|+|.|++||||||+|..|+.++|.. +++. |.+++.+.
T Consensus        88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~-D~~re~~R  132 (301)
T PRK04220         88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGT-DSIREVMR  132 (301)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEec-hHHHHHHH
Confidence            33578999999999999999999999999997 5665 55554443

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.80  E-value=4.6e-08  Score=91.28  Aligned_cols=114  Identities=11%  Similarity=0.052  Sum_probs=65.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ  101 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~  101 (245)
                      ...+|.+|+++|.|||||||+++.|++.+     +..+++.|. +|..+..+..+...-.          ..++..+...
T Consensus       456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~  524 (632)
T PRK05506        456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEV  524 (632)
T ss_pred             hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHH
Confidence            33458899999999999999999999997     346777755 4443322111111100          1122222211


Q ss_pred             HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970          102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER  154 (245)
Q Consensus       102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R  154 (245)
                      .......+..+|+|.......+...+.+.+..   .+-.+|||++|.+.+.+|
T Consensus       525 a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~---~~~~~v~L~~~~e~~~~R  574 (632)
T PRK05506        525 ARLMADAGLIVLVSFISPFREERELARALHGE---GEFVEVFVDTPLEVCEAR  574 (632)
T ss_pred             HHHHHhCCCEEEEECCCCCHHHHHHHHHhccc---CCeEEEEECCCHHHHHhh
Confidence            11111223456777543334444444433211   234799999999999999

>PRK07429 phosphoribulokinase; Provisional

Probab=98.78  E-value=1.3e-07  Score=80.92  Aligned_cols=39  Identities=23%  Similarity=0.199  Sum_probs=33.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDM   65 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~l   65 (245)
                      .+.++.+|.|.|++||||||+++.|+..++   ..++..|++
T Consensus         4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~   45 (327)
T PRK07429          4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY   45 (327)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence            456788999999999999999999999987   557777765

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.77  E-value=1.4e-06  Score=72.29  Aligned_cols=145  Identities=19%  Similarity=0.284  Sum_probs=84.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCC-
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS-CEK-  110 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~-~~~-  110 (245)
                      +|+|+|.+||||||..+.|. .+|+.-++                           .+|..++..++........ ..+ 
T Consensus         3 ~vIiTGlSGaGKs~Al~~lE-D~Gy~cvD---------------------------NlP~~Ll~~l~~~~~~~~~~~~~~   54 (284)
T PF03668_consen    3 LVIITGLSGAGKSTALRALE-DLGYYCVD---------------------------NLPPSLLPQLIELLAQSNSKIEKV   54 (284)
T ss_pred             EEEEeCCCcCCHHHHHHHHH-hcCeeEEc---------------------------CCcHHHHHHHHHHHHhcCCCCceE
Confidence            68999999999999999995 56776653                           2344555555443332211 122 


Q ss_pred             ceEEcCCCCCHHHHHHHHHH---HHhcCCCccEEEEEecCHHHHHHHHhCC-cccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          111 GFILDGFPRTVVQAEKLDEM---LEKQGTKIDKVLNFAIDDSILEERITGR-WIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       111 ~~iidg~p~~~~~~~~l~~~---~~~~~~~~~~vi~L~~~~e~~~~R~~~r-~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                      .+++|-  ++......+.+.   +...+.. -.++||+|+++++++|.+.- +.||...                     
T Consensus        55 Ai~iD~--R~~~~~~~~~~~~~~l~~~~~~-~~ilFLdA~d~~LirRy~eTRR~HPL~~---------------------  110 (284)
T PF03668_consen   55 AIVIDI--RSREFFEDLFEALDELRKKGID-VRILFLDASDEVLIRRYSETRRRHPLSS---------------------  110 (284)
T ss_pred             EEEEeC--CChHHHHHHHHHHHHHHhcCCc-eEEEEEECChHHHHHHHHhccCCCCCCC---------------------
Confidence            345663  222222222222   2233444 37999999999999997654 4455321                     


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhh
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVL  243 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l  243 (245)
                           .+...+.    ++.-++...++.+.-   +  ++||+ +.++-++-..|.+.+
T Consensus       111 -----~~~~le~----I~~Er~~L~~lr~~A---d--~vIDTs~l~~~~Lr~~i~~~~  154 (284)
T PF03668_consen  111 -----DGSLLEA----IEKERELLEPLRERA---D--LVIDTSNLSVHQLRERIRERF  154 (284)
T ss_pred             -----CCCcHHH----HHHHHHHHHHHHHhC---C--EEEECCCCCHHHHHHHHHHHh
Confidence                 1222222    333344455555432   2  45666 588888888887765

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PTZ00301 uridine kinase; Provisional

Probab=98.76  E-value=7.7e-08  Score=77.40  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=28.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML   66 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li   66 (245)
                      -++|.|.|+|||||||+|+.|++.++       ..++..|...
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy   45 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY   45 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            36899999999999999999987762       2356666654

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.75  E-value=4.4e-07  Score=86.46  Aligned_cols=40  Identities=28%  Similarity=0.404  Sum_probs=36.9

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV   70 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~   70 (245)
                      .++|+|.||+||||||+|+.||+++++.+++++.++|...
T Consensus        34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            3589999999999999999999999999999999988753

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.75  E-value=1.7e-06  Score=76.55  Aligned_cols=44  Identities=16%  Similarity=0.266  Sum_probs=35.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc-eeehHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC-HLATGDMLRSAVA   71 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~-~i~~~~li~~~~~   71 (245)
                      .+++|.+|+|.|++||||||++..|+..+|+. ++++ |.+++.+.
T Consensus       251 ~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~lr  295 (475)
T PRK12337        251 RPPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREVLR  295 (475)
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHHHH
Confidence            33578999999999999999999999999997 5566 55555443

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.74  E-value=1.4e-07  Score=72.30  Aligned_cols=113  Identities=12%  Similarity=0.109  Sum_probs=64.0

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHH--H
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVG--I   98 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~--~   98 (245)
                      +...+|.+|+|+|.+||||||+|.+|.+++   |.  .+++- |-+|..+..+--+...=+          .+.+.+  .
T Consensus        18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-DnvR~gL~~dLgFs~edR----------~eniRRvae   86 (197)
T COG0529          18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-DNVRHGLNRDLGFSREDR----------IENIRRVAE   86 (197)
T ss_pred             HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-hhHhhcccCCCCCChHHH----------HHHHHHHHH
Confidence            455678899999999999999999999998   43  34444 555665543211111100          001111  1


Q ss_pred             HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970           99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER  154 (245)
Q Consensus        99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R  154 (245)
                      +...+.   ....++|..|-........+.+-+...  ..-+=||++||.+++.+|
T Consensus        87 vAkll~---daG~iviva~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~vce~R  137 (197)
T COG0529          87 VAKLLA---DAGLIVIVAFISPYREDRQMARELLGE--GEFIEVYVDTPLEVCERR  137 (197)
T ss_pred             HHHHHH---HCCeEEEEEeeCccHHHHHHHHHHhCc--CceEEEEeCCCHHHHHhc
Confidence            111111   123455666655544443333322222  234789999999999988

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.74  E-value=1.5e-07  Score=76.84  Aligned_cols=42  Identities=26%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             hHHHHHHHHhcc---CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           15 DMMTELLRRFKC---SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        15 ~~~~~~~~~~~~---~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .....+++++..   ...++.++.|.|++||||||+++.|+..+.
T Consensus        14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            344444444442   456789999999999999999999998874

>COG4639 Predicted kinase [General function prediction only]

Probab=98.74  E-value=2.2e-07  Score=69.84  Aligned_cols=114  Identities=20%  Similarity=0.133  Sum_probs=73.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      .++++.|+|||||||+++...  .+..+++++++=... .  ...++..    ..+. ..-.+.+...+.+++.   .++
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-g--~~~~~e~----sqk~~~~~~~~l~~~l~qrl~---~Gk   70 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL-G--VSASKEN----SQKNDELVWDILYKQLEQRLR---RGK   70 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh-h--hchhhhh----ccccHHHHHHHHHHHHHHHHH---cCC
Confidence            478999999999999998743  477889987764321 1  0001100    0000 0001223334444443   356


Q ss_pred             ceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          111 GFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       111 ~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                      ..|+|..-........+..+...++..+ .+|+|+.|.+.+.+|-+.|
T Consensus        71 ~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          71 FTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             eEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhcc
Confidence            7899988777777777777777776655 6799999999999997644

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.66  E-value=8.4e-08  Score=63.21  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=21.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +|+|.|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999884

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PLN02348 phosphoribulokinase

Probab=98.65  E-value=2e-07  Score=80.76  Aligned_cols=30  Identities=17%  Similarity=0.189  Sum_probs=27.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ...++.+|.|.|++||||||+++.|++.++
T Consensus        45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456788999999999999999999999986

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.62  E-value=6.6e-07  Score=72.31  Aligned_cols=154  Identities=19%  Similarity=0.223  Sum_probs=82.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHHHHHcC---------CchHHHHHHHHHcCCCCCHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRSAVAAK---------TPLGIKAKEAMDKGELVSDD   93 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~~~~~~---------~~~~~~i~~~l~~~~~~~~~   93 (245)
                      ...+.+|++.|.|+.|||++|+.|+.-+   |  ..+++++++-|+.....         .+.+..+++          .
T Consensus         9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~----------~   78 (222)
T PF01591_consen    9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLRE----------Q   78 (222)
T ss_dssp             ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHH----------H
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHH----------H
Confidence            3457799999999999999999999666   3  36889998888766541         122333332          2


Q ss_pred             HHHHHHHHHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHH-HHhCCcccCCCCccccc
Q 025970           94 LVVGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE-RITGRWIHPASGRSYHT  170 (245)
Q Consensus        94 ~~~~~l~~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~-R~~~r~~~~~~~~~y~~  170 (245)
                      +....+.+.+..+  ..+...|+|+.-.+...+..+...+...+..+ ++|..-|+++.+++ .+......   ..+|. 
T Consensus        79 ~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~v-lFIEsic~D~~ii~~NI~~~~~~---spDY~-  153 (222)
T PF01591_consen   79 IAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKV-LFIESICDDPEIIERNIREKKQN---SPDYK-  153 (222)
T ss_dssp             HHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EE-EEEEEE---HHHHHHHHHHHHTT---SGGGT-
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEEEEeCCHHHHHHHHHHHHcC---Ccccc-
Confidence            2222232222222  23456899999889999988888887776322 34444466665554 45443311   11221 


Q ss_pred             cCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHH
Q 025970          171 KFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI  214 (245)
Q Consensus       171 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~  214 (245)
                                        ...++...+.+.+|++.|....+++.
T Consensus       154 ------------------~~~~e~A~~Df~~RI~~Ye~~YEpl~  179 (222)
T PF01591_consen  154 ------------------GMDPEEAIEDFKKRIEHYEKVYEPLD  179 (222)
T ss_dssp             ------------------TS-HHHHHHHHHHHHHHHHTT-----
T ss_pred             ------------------cCCHHHHHHHHHHHHHhhcccccccc
Confidence                              00122245667789999999888887

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.59  E-value=6.6e-06  Score=66.93  Aligned_cols=146  Identities=20%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCCCC-
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAM-KKPSCEK-  110 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~~~~~~-  110 (245)
                      +|+|+|.+|||||+..+.|. .+|+..++                           .+|.+++-+++.-.. ......+ 
T Consensus         3 lvIVTGlSGAGKsvAl~~lE-DlGyycvD---------------------------NLPp~Llp~~~~~~~~~~~~~~kv   54 (286)
T COG1660           3 LVIVTGLSGAGKSVALRVLE-DLGYYCVD---------------------------NLPPQLLPKLADLMLTLESRITKV   54 (286)
T ss_pred             EEEEecCCCCcHHHHHHHHH-hcCeeeec---------------------------CCCHHHHHHHHHHHhhcccCCceE
Confidence            68999999999999999995 56765552                           234555555554332 1111222 


Q ss_pred             ceEEcCCCCCHHHHHHHHHHH---HhcC-CCccEEEEEecCHHHHHHHHhC-CcccCCCCccccccCCCCCCCCCCCCCC
Q 025970          111 GFILDGFPRTVVQAEKLDEML---EKQG-TKIDKVLNFAIDDSILEERITG-RWIHPASGRSYHTKFAPPKVHGFDDVTG  185 (245)
Q Consensus       111 ~~iidg~p~~~~~~~~l~~~~---~~~~-~~~~~vi~L~~~~e~~~~R~~~-r~~~~~~~~~y~~~~~~p~~~~~~~~~~  185 (245)
                      .+++|-  ++......+.+.+   .+.+ ..+ .++||+++++++++|.+. |+.||..+                    
T Consensus        55 Av~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~--------------------  111 (286)
T COG1660          55 AVVIDV--RSREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSHPLSE--------------------  111 (286)
T ss_pred             EEEEec--ccchhHHHHHHHHHHHHhcCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCc--------------------
Confidence            455663  3333333343333   2332 234 699999999999999765 44555432                    


Q ss_pred             CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhhc
Q 025970          186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVLS  244 (245)
Q Consensus       186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l~  244 (245)
                             +..   +..-+..-++...++..--+     ++||+ +.++-++-+.|...+.
T Consensus       112 -------~~~---l~~~I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~~~f~  156 (286)
T COG1660         112 -------DGL---LLEAIAKERELLAPLREIAD-----LVIDTSELSVHELRERIRTRFL  156 (286)
T ss_pred             -------cCc---HHHHHHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHHHHHc
Confidence                   111   33334444555666665422     35665 6899999999987764

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.59  E-value=3e-07  Score=74.63  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=27.7

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML   66 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li   66 (245)
                      +|.|.|++||||||+++.|+..+.       +.++++|+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            478999999999999999998873       3567777653

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PHA00729 NTP-binding motif containing protein

Probab=98.57  E-value=8.4e-07  Score=71.65  Aligned_cols=114  Identities=16%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcc--eeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLC--HLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS  107 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~  107 (245)
                      ....|+|+|+||+||||+|..|+..++..  .+..+....   .++           .....++-..+...+........
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~---d~~-----------~~~~fid~~~Ll~~L~~a~~~~~   81 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAW---QYV-----------QNSYFFELPDALEKIQDAIDNDY   81 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHH---hcC-----------CcEEEEEHHHHHHHHHHHHhcCC
Confidence            33589999999999999999999987521  222211100   000           00111222223333333332221


Q ss_pred             CCCceEEcCCCCCHHH----------HHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          108 CEKGFILDGFPRTVVQ----------AEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~----------~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      ...-.|+|++..-...          .-.+..++.   ..++.++++.++++.+.+++..|..
T Consensus        82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLr---SR~~l~il~~ls~edL~~~Lr~Rg~  141 (226)
T PHA00729         82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIR---TRVSAVIFTTPSPEDLAFYLREKGW  141 (226)
T ss_pred             CCCEEEEeCCchhhcccchhhhccchHHHHHHHHH---hhCcEEEEecCCHHHHHHHHHhCCC
Confidence            1123588884221110          011223331   3568899999999999999999864

>PRK05439 pantothenate kinase; Provisional

Probab=98.56  E-value=8.9e-08  Score=81.12  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=33.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML   66 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li   66 (245)
                      ....|.+|.|.|+|||||||+|+.|++.++       +.++++|+..
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            446788999999999999999999998663       4577887764

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.52  E-value=1.5e-06  Score=72.85  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh---CcceeehHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDM   65 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~l   65 (245)
                      +|.|.|++||||||+++.|+..+   +..++..|++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            47899999999999999999877   4557777765

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.49  E-value=5.6e-07  Score=70.93  Aligned_cols=26  Identities=38%  Similarity=0.705  Sum_probs=23.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +..|+|+||+||||+|+++.|.+.++
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            45789999999999999999999875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.48  E-value=2.4e-07  Score=77.89  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML   66 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li   66 (245)
                      ..+.|.+|.|.|++||||||+++.|+..+.       +.++++|...
T Consensus        58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        58 GAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            346788999999999999999998876653       4456666543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.44  E-value=1.5e-07  Score=74.93  Aligned_cols=24  Identities=29%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +|.|.|++||||||+|+.|+..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN02772 guanylate kinase

Probab=98.44  E-value=4.2e-06  Score=72.72  Aligned_cols=27  Identities=37%  Similarity=0.712  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ..+.|+|+||+||||+|+.++|.+.+.
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p  160 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFP  160 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence            456899999999999999999988763

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.43  E-value=6.2e-07  Score=70.49  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLR   67 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~   67 (245)
                      +|.|.|++||||||+|+.|++.+     +..+|+.|++.+
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            47899999999999999999996     457899998876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.36  E-value=3.1e-05  Score=62.85  Aligned_cols=59  Identities=24%  Similarity=0.313  Sum_probs=45.0

Q ss_pred             CChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCccee-ehHHHHHHHHH
Q 025970           11 VPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL-ATGDMLRSAVA   71 (245)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i-~~~~li~~~~~   71 (245)
                      +|++..-+.+.+++. ..+.|.+|+|-|+||+||||+|.-||.++|+..+ ++ |.+|+.+.
T Consensus        70 ~~e~a~rY~lwR~ir-~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visT-D~IREvlR  129 (299)
T COG2074          70 DPEVAKRYLLWRRIR-KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVIST-DSIREVLR  129 (299)
T ss_pred             CHHHHHHHHHHHHHh-ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecc-hHHHHHHH
Confidence            445555555555554 7788999999999999999999999999999754 55 56666654

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.34  E-value=8e-06  Score=61.89  Aligned_cols=66  Identities=14%  Similarity=0.187  Sum_probs=49.8

Q ss_pred             cEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHH
Q 025970          139 DKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYA  218 (245)
Q Consensus       139 ~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~  218 (245)
                      -.+|.|.++++++.+|+.+|.                                 .++.+.+..|+..-...       -.
T Consensus       116 Llvv~ita~p~VLaqRL~~RG---------------------------------REs~eeI~aRL~R~a~~-------~~  155 (192)
T COG3709         116 LLVVCITASPEVLAQRLAERG---------------------------------RESREEILARLARAARY-------TA  155 (192)
T ss_pred             ceeEEEecCHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHhhccc-------cc
Confidence            368999999999999999984                                 45678888888642211       11


Q ss_pred             hcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          219 KKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       219 ~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ..+.++.||+++.++...+.+...+.
T Consensus       156 ~~~dv~~idNsG~l~~ag~~ll~~l~  181 (192)
T COG3709         156 GPGDVTTIDNSGELEDAGERLLALLH  181 (192)
T ss_pred             CCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence            24578999999999998877776553

>PRK15453 phosphoribulokinase; Provisional

Probab=98.31  E-value=4.1e-06  Score=69.72  Aligned_cols=38  Identities=11%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDML   66 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li   66 (245)
                      +++++|+|+|.|||||||+++.|++.++     ..+++.|+.-
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            4667999999999999999999998774     4567776553

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.30  E-value=9.4e-06  Score=63.63  Aligned_cols=121  Identities=15%  Similarity=0.123  Sum_probs=68.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCC-----------------chHHHHHHHHHcCCCCC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKT-----------------PLGIKAKEAMDKGELVS   91 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~-----------------~~~~~i~~~l~~~~~~~   91 (245)
                      +..+|.|.|.+.|||||+|+.|...+ |..+|+-|+.....-+-..                 .+...+...+......|
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~   82 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP   82 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence            34688999999999999999999988 6778887776543222100                 11223333344333332


Q ss_pred             H--H------HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           92 D--D------LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        92 ~--~------~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      +  .      .+....+.--.......-+|+|||......-.  .       ..++..|++..+-+++++|=..|.
T Consensus        83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~--~-------~~~d~~im~~~~y~~~krRr~~Rt  149 (225)
T KOG3308|consen   83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQ--V-------DLFDRIIMLTLDYETCKRRREART  149 (225)
T ss_pred             hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchh--h-------hhhhhheeeeccHHHHHHhhcccc
Confidence            2  1      11111111101111223578899743211100  0       245789999999999999977765

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.24  E-value=5.7e-06  Score=65.01  Aligned_cols=116  Identities=12%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCC-------chHHHH--HHH---HHcC-------CCCCHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKT-------PLGIKA--KEA---MDKG-------ELVSDD   93 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~-------~~~~~i--~~~---l~~~-------~~~~~~   93 (245)
                      +|.|.|..|||++++++.||+++|+++++- +++........       ......  ..+   +..+       ....+.
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            589999999999999999999999999998 66655433210       000110  011   1111       111222


Q ss_pred             HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           94 LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        94 ~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .+.......+........+|+-|.  ....      ++.  +....+.|+|.+|.+..++|+..+.
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~GR--~a~~------il~--~~~~~l~V~i~A~~~~Rv~ri~~~~  135 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIVGR--CANY------ILR--DIPNVLHVFIYAPLEFRVERIMERE  135 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEEST--THHH------HTT--T-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEec--CHhh------hhC--CCCCeEEEEEECCHHHHHHHHHHHc
Confidence            233333333333322334555553  2111      221  1234689999999999999999873

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=98.12  E-value=0.00017  Score=58.67  Aligned_cols=174  Identities=11%  Similarity=0.108  Sum_probs=95.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc---eeehHHHHHHHHHcCCchHHHHHHHHH-cCC--CCCHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC---HLATGDMLRSAVAAKTPLGIKAKEAMD-KGE--LVSDDLVVGIID  100 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~---~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~--~~~~~~~~~~l~  100 (245)
                      +...|.+|+|.|..||||..+.+.|.+.++=-   +.+...--..  +...++--.+-..+- .|.  ....++....+.
T Consensus        27 ~~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~e--E~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv  104 (230)
T TIGR03707        27 ETGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDR--ERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGV  104 (230)
T ss_pred             HcCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHH--HHcChHHHHHHHhCCCCCeEEEEeCchhhhHHH
Confidence            45679999999999999999999999988543   3332110000  001111111111111 121  112334444444


Q ss_pred             HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCC
Q 025970          101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGF  180 (245)
Q Consensus       101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~  180 (245)
                      .++......     ..+.....+...|++.+...|... +=++|++|.++..+|+..|..++.+.               
T Consensus       105 ~rv~~~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-lKfflhIsk~eQ~kRl~~r~~~p~k~---------------  163 (230)
T TIGR03707       105 ERVMGFCTD-----EEYEEFLRQVPEFERMLVRDGIHL-FKYWLSVSREEQLRRFKARIDDPLKQ---------------  163 (230)
T ss_pred             HHhcCCCCH-----HHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccc---------------
Confidence            443321100     011223355566777787776544 78899999999999999987544321               


Q ss_pred             CCCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChhH
Q 025970          181 DDVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPPKE  234 (245)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~e~  234 (245)
                                 =..++..+.  ++...|.+....+...-+ ....|++|+++...-.
T Consensus       164 -----------Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a  209 (230)
T TIGR03707       164 -----------WKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKKRA  209 (230)
T ss_pred             -----------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHH
Confidence                       112222222  334566555555554433 2457999998766443

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=98.11  E-value=0.00023  Score=59.01  Aligned_cols=173  Identities=13%  Similarity=0.074  Sum_probs=92.2

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCc---ceeehHHHHHHHHHcCCc-hHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL---CHLATGDMLRSAVAAKTP-LGIKAKEAMDKGE--LVSDDLVVGIIDQ  101 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~---~~i~~~~li~~~~~~~~~-~~~~i~~~l~~~~--~~~~~~~~~~l~~  101 (245)
                      ...|.+|+|.|..||||..+.+.|.+.++=   .+.+...--..+  ...+ +.+.....=..|.  ....++....+..
T Consensus        53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE--~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~  130 (264)
T TIGR03709        53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEE--LDHDFLWRIHKALPERGEIGIFNRSHYEDVLVV  130 (264)
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHH--HcCchHHHHHHhCCCCCeEEEEcCccccchhhh
Confidence            456999999999999999999999998853   333331100000  0011 1111111101121  1112233333333


Q ss_pred             HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCC
Q 025970          102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD  181 (245)
Q Consensus       102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~  181 (245)
                      ++......     ..+.....+...|++.+...|... +=++|++|.++..+|+..|..++.+.                
T Consensus       131 rv~g~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-iKffLhIsk~eQ~kRl~~r~~~p~k~----------------  188 (264)
T TIGR03709       131 RVHGLIPK-----AIWERRYEDINDFERYLTENGTTI-LKFFLHISKEEQKKRFLARLDDPTKN----------------  188 (264)
T ss_pred             hhcCCCCH-----HHHHHHHHHHHHHHHHHHHCCcEE-EEEEEeCCHHHHHHHHHHHhcCCccc----------------
Confidence            32211000     001122345566777777776544 77899999999999999987544321                


Q ss_pred             CCCCCccccCCCCcHHHH--HHHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChhH
Q 025970          182 DVTGEPLIQRKDDTAQVL--KSRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPPKE  234 (245)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~--~~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~e~  234 (245)
                                =..++..+  .++...|.+....+...-+ ....|++|+++...-.
T Consensus       189 ----------Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a  234 (264)
T TIGR03709       189 ----------WKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFR  234 (264)
T ss_pred             ----------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHH
Confidence                      11222222  2345666666655555433 2457999998766443

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.10  E-value=2.7e-06  Score=62.75  Aligned_cols=29  Identities=28%  Similarity=0.527  Sum_probs=25.7

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      |+|.||||+||||+++.+++.++.+++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i   29 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEI   29 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence            68999999999999999999999766544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN02165 adenylate isopentenyltransferase

Probab=98.08  E-value=3.5e-06  Score=71.87  Aligned_cols=39  Identities=26%  Similarity=0.362  Sum_probs=34.8

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .+.++.+|+|+||+||||||++..|++.++..++++|.+
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            345566899999999999999999999999999999876

>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2

Probab=98.08  E-value=8.8e-07  Score=50.03  Aligned_cols=36  Identities=56%  Similarity=0.917  Sum_probs=30.5

Q ss_pred             CcccCCCCccccccCCCCCCCCCCCCCCCccccCCC
Q 025970          158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKD  193 (245)
Q Consensus       158 r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~  193 (245)
                      |++++.+|..||..|+||..+++++.||..|++|.+
T Consensus         1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~D   36 (36)
T PF05191_consen    1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRKD   36 (36)
T ss_dssp             EEEETTTTEEEETTTB--SSTTBCTTTTEBEBEEGG
T ss_pred             CcCcCCCCCccccccCCCCCCCccCCCCCeeEeCCC
Confidence            457889999999999999999999999999988754

7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.07  E-value=8.9e-06  Score=60.45  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=37.0

Q ss_pred             ChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           12 PSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ++.+-...++..+....+++.+|+|.|+.||||||+++.+++.+|..
T Consensus         3 ~s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150         3 PDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            34445556666666555677899999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.04  E-value=2.1e-05  Score=74.00  Aligned_cols=118  Identities=17%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceee-----hHHHHHHHHHcCCchHHHHHHHHHcCCCCCH----HHHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA-----TGDMLRSAVAAKTPLGIKAKEAMDKGELVSD----DLVVGIID  100 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~-----~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~l~  100 (245)
                      ....|++.|.||+||||+++.|++.+++..++     .+.+-+........         ..+.....    .....++.
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~---------~~~~~~~~~~e~~~~~~~~~  284 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGA---------VSSPTGAAEVEFRIAKAIAH  284 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCC---------cCCCCCHHHHHHHHHHHHHH
Confidence            35689999999999999999999998655443     33333322111000         00000001    11111211


Q ss_pred             ---HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCC-CccEEEEEe--cCHHHHHHHHhCC
Q 025970          101 ---QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGT-KIDKVLNFA--IDDSILEERITGR  158 (245)
Q Consensus       101 ---~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~-~~~~vi~L~--~~~e~~~~R~~~r  158 (245)
                         ..+..  .+.++|+|+.-.+......+.+.+.+.+. .+..+|||+  |++..++++-..|
T Consensus       285 d~~~~v~~--~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r  346 (664)
T PTZ00322        285 DMTTFICK--TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLR  346 (664)
T ss_pred             HHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHH
Confidence               11222  24588999987776666555555555543 122355555  6666666554444

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.03  E-value=0.00025  Score=53.83  Aligned_cols=115  Identities=15%  Similarity=0.165  Sum_probs=60.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      +.+.++-|+.||||||+...+-..+  ++.++++|.+..+ +.+..+....+..         .+.....+...+.   .
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A---------~r~ai~~i~~~I~---~   68 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQA---------ARVAIDRIARLID---L   68 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHH---------HHHHHHHHHHHHH---c
Confidence            4567889999999999876654444  6788999777544 3333332222221         1122222222222   2


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ..+|..+.........+.+. -.+..|....+.+..-=+.|..++|+..|-
T Consensus        69 ~~~F~~ETtLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~RV  118 (187)
T COG4185          69 GRPFIAETTLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLRV  118 (187)
T ss_pred             CCCcceEEeeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHHH
Confidence            34566654433333333222 223344333333333346678899998874

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.03  E-value=0.00034  Score=62.92  Aligned_cols=171  Identities=14%  Similarity=0.156  Sum_probs=92.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHH-cCC--CCCHHHHHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGE--LVSDDLVVGIIDQ  101 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~--~~~~~~~~~~l~~  101 (245)
                      ...|.+|+|.|..||||+++.+.|.+.++   +.+.+...=-..  +...++--.+-..+- .|.  ....++..+.+..
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e--E~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlve  114 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE--ERERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIE  114 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH--HhcCcHHHHHHHhCCCCCeEEEEcCcccchhhHH
Confidence            67899999999999999999999999884   333332110000  001111111111111 121  1122333333333


Q ss_pred             HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCC
Q 025970          102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD  181 (245)
Q Consensus       102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~  181 (245)
                      ++......     ..+.....+...|++.+...|... +=++|++|.++..+|+..|..++...                
T Consensus       115 rv~g~~~~-----~~~~~~~~~I~~FE~~L~~~G~~I-lKffLhIsk~EQ~kRl~~r~~~P~k~----------------  172 (493)
T TIGR03708       115 RLEGRIDE-----AKLDSHIEDINRFERMLADDGALI-LKFWLHLSKKQQKERLKKLEKDPETR----------------  172 (493)
T ss_pred             HhcCCCCH-----HHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccc----------------
Confidence            33211000     001122345566777777776644 78899999999999999997554321                


Q ss_pred             CCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCCh
Q 025970          182 DVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPP  232 (245)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~  232 (245)
                                =..++..++  .+...|.+....+...-+ ....|++|+++...
T Consensus       173 ----------WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~  216 (493)
T TIGR03708       173 ----------WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDR  216 (493)
T ss_pred             ----------cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHH
Confidence                      122333333  234555555555444332 23479999987653

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.02  E-value=0.00023  Score=54.36  Aligned_cols=103  Identities=15%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             EEEECCCCCChhHHHHHHHhHhC-cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYC-LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~-~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  112 (245)
                      |+=++.+||||||++..|++.|| +.|+.-|++-.+                     . ...+.+...+.+. ......+
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k---------------------~-~~~f~~~~l~~L~-~~~~~vV   58 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK---------------------R-KPKFIKAVLELLA-KDTHPVV   58 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC---------------------C-HHHHHHHHHHHHh-hCCCCEE
Confidence            45578999999999999999999 999988876211                     0 1112222222231 1234578


Q ss_pred             EEcCCCCCHHHHHHHHHHHHhcCC------CccEEEEEecC----H----HHHHHHHhCCc
Q 025970          113 ILDGFPRTVVQAEKLDEMLEKQGT------KIDKVLNFAID----D----SILEERITGRW  159 (245)
Q Consensus       113 iidg~p~~~~~~~~l~~~~~~~~~------~~~~vi~L~~~----~----e~~~~R~~~r~  159 (245)
                      |.|..-.....++++...+.....      ..-.+|.|...    .    +...+|+..|.
T Consensus        59 iaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RG  119 (168)
T PF08303_consen   59 IADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARG  119 (168)
T ss_pred             EEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcC
Confidence            888766666666665555443211      01123333322    2    56777888885

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.01  E-value=5.6e-06  Score=70.35  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=32.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .+++|+|.||+|||||+++..|++.++..+|++|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            456899999999999999999999999999999874

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=98.01  E-value=0.00042  Score=54.25  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=26.4

Q ss_pred             HHHHhcCCCccEEEEEecCHHHHHHHHhCCccc
Q 025970          129 EMLEKQGTKIDKVLNFAIDDSILEERITGRWIH  161 (245)
Q Consensus       129 ~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~  161 (245)
                      +++.+....+|.+|||.++|+++.+|+..|...
T Consensus       145 ~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~  177 (244)
T KOG4235|consen  145 WILRSMDVSLDGIIYLRASPETCYKRIYLRARE  177 (244)
T ss_pred             HHHhccccccceEEEeecChHHHHHHHHHHhhh
Confidence            343343378899999999999999999999753

>PHA03136 thymidine kinase; Provisional

Probab=98.00  E-value=0.00039  Score=60.12  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             CCccEEEEEecCHHHHHHHHhCCcc
Q 025970          136 TKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       136 ~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      ..||.+|||+++++++.+|+.+|..
T Consensus       190 p~pD~IIyL~l~~e~~~~RI~kRgR  214 (378)
T PHA03136        190 PHGGNIVIMDLDECEHAERIIARGR  214 (378)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            4688999999999999999999964

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.99  E-value=1.1e-05  Score=66.32  Aligned_cols=29  Identities=14%  Similarity=0.217  Sum_probs=26.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ....|.+|.|.|++|+||||+|+.|+..+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll  106 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALL  106 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence            45679999999999999999999998877

>PRK09169 hypothetical protein; Validated

Probab=97.98  E-value=0.00011  Score=74.81  Aligned_cols=108  Identities=8%  Similarity=0.014  Sum_probs=75.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      ...|+|+|.+|+||||+++.|+..++..++++|..+.+.      .++.|.+++...+ ...+.....+.+.+.     .
T Consensus      2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr-----~ 2177 (2316)
T PRK09169       2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR-----W 2177 (2316)
T ss_pred             hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc-----C
Confidence            447899999999999999999999999999999888763      5667777766444 555555555555543     1


Q ss_pred             ceEE--cCCCCC-HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          111 GFIL--DGFPRT-VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       111 ~~ii--dg~p~~-~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                      ..||  .|+... .....    .+...    .++||+..+.+.+.+|+...
T Consensus      2178 ~vVLSTGGGav~~~enr~----~L~~~----GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2178 EVVLPAEGFGAAVEQARQ----ALGAK----GLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             CeEEeCCCCcccCHHHHH----HHHHC----CEEEEEECCHHHHHHHhccC
Confidence            2333  233222 22222    22223    47999999999999998765

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.98  E-value=4.6e-05  Score=69.49  Aligned_cols=39  Identities=13%  Similarity=0.215  Sum_probs=32.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDM   65 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~l   65 (245)
                      ...++.+|.|.|++||||||+++.|+..+ +...|++|+.
T Consensus        61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            33467899999999999999999999887 4457777765

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.90  E-value=9.8e-05  Score=61.54  Aligned_cols=28  Identities=29%  Similarity=0.542  Sum_probs=23.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+..++|+||||+||||+|+.+++.+
T Consensus        39 ~~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        39 SKQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            3445678999999999999999999865

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.90  E-value=1.3e-05  Score=62.45  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=27.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC--cceeehHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGD   64 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~   64 (245)
                      ++|+|+|+|||||||+|..|+..++  ..++.+..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~   36 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ   36 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence            5799999999999999999999987  45565543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.89  E-value=1.2e-05  Score=60.95  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=25.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +-++.|+|+|+||+||||++..+++.+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            3578999999999999999999998874

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.88  E-value=0.00024  Score=58.84  Aligned_cols=35  Identities=14%  Similarity=0.292  Sum_probs=28.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLR   67 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~   67 (245)
                      +|.|+|++||||||+++.|++.++     ..+|+.|+..+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            478999999999999999998874     45777776644

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=0.00021  Score=62.97  Aligned_cols=110  Identities=20%  Similarity=0.330  Sum_probs=59.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh----C--cceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY----C--LCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELV-SDDLVVGIIDQ  101 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~----~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~-~~~~~~~~l~~  101 (245)
                      ++.+|+|+|++||||||++..|+..+    |  +.++++| ..|...      ...+..+... |..+ ...... .+..
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D-t~R~aA------~eQLk~yAe~lgvp~~~~~~~~-~l~~  293 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIAA------IEQLKRYADTMGMPFYPVKDIK-KFKE  293 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc-chhhhH------HHHHHHHHHhcCCCeeehHHHH-HHHH
Confidence            45689999999999999999999765    2  3345554 333311      1122222222 1111 111122 2223


Q ss_pred             HHcCCCCCCceEEc--CCC-CCHHHHHHHHHHHHhcCC--CccEEEEEecCH
Q 025970          102 AMKKPSCEKGFILD--GFP-RTVVQAEKLDEMLEKQGT--KIDKVLNFAIDD  148 (245)
Q Consensus       102 ~l~~~~~~~~~iid--g~p-~~~~~~~~l~~~~~~~~~--~~~~vi~L~~~~  148 (245)
                      .+.. .....++||  |++ +...+...|..++...+.  ....+++|++.-
T Consensus       294 ~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~  344 (432)
T PRK12724        294 TLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS  344 (432)
T ss_pred             HHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence            3332 223568899  553 566777777776643322  224566666544

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.87  E-value=2.3e-05  Score=63.08  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=33.1

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcce-eehHHHHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCH-LATGDMLRSAVA   71 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~-i~~~~li~~~~~   71 (245)
                      |+|+|+|.|||||||+++.+.+. |.++ +++.+-++..+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~   40 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA   40 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence            58999999999999999999765 5555 999988888665

>CHL00181 cbbX CbbX; Provisional

Probab=97.86  E-value=0.00013  Score=61.71  Aligned_cols=27  Identities=30%  Similarity=0.541  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++..++|.|+||+||||+|+.+++.+
T Consensus        57 ~~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         57 NPGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            356678999999999999999998875

>PLN02840 tRNA dimethylallyltransferase

Probab=97.84  E-value=1.5e-05  Score=70.13  Aligned_cols=36  Identities=22%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      .++++|+|.||+||||||++..|++.++..+|+.|.
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            456789999999999999999999999988888875

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.84  E-value=2.1e-05  Score=62.51  Aligned_cols=123  Identities=13%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHH-HHHcCC--c----hHH-----HHHHHHHcCCCCCHHHHHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRS-AVAAKT--P----LGI-----KAKEAMDKGELVSDDLVVGIID  100 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~-~~~~~~--~----~~~-----~i~~~l~~~~~~~~~~~~~~l~  100 (245)
                      +++|.||+|+|||.++-.||+++|.++|+.|.+-.- .+.-++  +    +..     .....+..|. ++.+-....+.
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~Li   81 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERLI   81 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHHH
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHHH
Confidence            689999999999999999999999999999866221 111011  1    000     0011223343 45555666666


Q ss_pred             HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHH-HHHHHHhCC
Q 025970          101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDS-ILEERITGR  158 (245)
Q Consensus       101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e-~~~~R~~~r  158 (245)
                      ..+......+++|++|.--+..  ..+.+-........-.+.++.+++. .-+.|..+|
T Consensus        82 ~~v~~~~~~~~~IlEGGSISLl--~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R  138 (233)
T PF01745_consen   82 SEVNSYSAHGGLILEGGSISLL--NCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR  138 (233)
T ss_dssp             HHHHTTTTSSEEEEEE--HHHH--HHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred             HHHHhccccCceEEeCchHHHH--HHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence            7777776678999998632221  1111111110112235777777775 444455444

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.82  E-value=4e-05  Score=61.69  Aligned_cols=32  Identities=28%  Similarity=0.510  Sum_probs=24.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ....-++|+||||+||||+|+.+|+.++..+.
T Consensus        48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~   79 (233)
T PF05496_consen   48 EALDHMLFYGPPGLGKTTLARIIANELGVNFK   79 (233)
T ss_dssp             S---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred             CCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence            34457789999999999999999999987654

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.81  E-value=1.4e-05  Score=61.71  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=24.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV   70 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~   70 (245)
                      +|+|+|++|+||||+++.|++. |++++  .+..+..+
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~   35 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREII   35 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHH
Confidence            4899999999999999999988 88877  35544433

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=97.78  E-value=0.00022  Score=58.07  Aligned_cols=172  Identities=14%  Similarity=0.144  Sum_probs=84.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCc-hHHHHHHHHHcCC--CCCHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTP-LGIKAKEAMDKGE--LVSDDLVVGIID  100 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~-~~~~i~~~l~~~~--~~~~~~~~~~l~  100 (245)
                      ....|.+|+|.|..||||+.+.+.|.+.++   +.+.+...--.++  ...+ +.+....+=..|.  ....++....+.
T Consensus        27 ~~~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE--~~~p~lwRfw~~lP~~G~I~if~rSWY~~~l~  104 (228)
T PF03976_consen   27 EAGIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEE--LRRPFLWRFWRALPARGQIGIFDRSWYEDVLV  104 (228)
T ss_dssp             HHHHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHH--HTS-TTHHHHTTS--TT-EEEEES-GGGGGTH
T ss_pred             HcCCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhH--cCCCcHHHHHHhCCCCCEEEEEecchhhHHHH
Confidence            334569999999999999999999998884   3333332110110  0011 1111100000111  011122222222


Q ss_pred             HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCC
Q 025970          101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGF  180 (245)
Q Consensus       101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~  180 (245)
                      .++......     ..+.....+...|++.+...|... +=++|++|.++..+|+..+..++.+.               
T Consensus       105 ~rv~~~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-iKfflhIsk~eQ~kRl~~~~~~p~~~---------------  163 (228)
T PF03976_consen  105 ERVEGFIDE-----AEWERRLEEINRFERMLADDGTLI-IKFFLHISKKEQKKRLKEREEDPLKR---------------  163 (228)
T ss_dssp             HHHTTSSTH-----HHHHHHHHHHHHHHHHHHHTTEEE-EEEEEE--HHHHHHHHHHHHHSCCCG---------------
T ss_pred             HHHhcCCCH-----HHHHHHHHHHHHHHHHHHHCCCeE-EEEEEEeCHHHHHHHHHHHhcCcccc---------------
Confidence            222211000     001122355566777777776544 77899999999999999997554321               


Q ss_pred             CCCCCCccccCCCCcHHHHHH--HHHHHHHhhHHHHHHHH-hcCcEEEEeCCCCh
Q 025970          181 DDVTGEPLIQRKDDTAQVLKS--RLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPP  232 (245)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~~--rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~  232 (245)
                                 -..++..++.  ....|.+....+...-+ ....|++|+++...
T Consensus       164 -----------wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~  207 (228)
T PF03976_consen  164 -----------WKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKR  207 (228)
T ss_dssp             -----------GG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHH
T ss_pred             -----------ccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHH
Confidence                       1123333332  35566665555555433 24589999987654

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>PF13173 AAA_14: AAA domain

Probab=97.77  E-value=0.00038  Score=51.44  Aligned_cols=99  Identities=17%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      +++++|.|+.|+||||+++.+++.+.    +.+++.++.-.....                  . .+ +.+.+.+.... 
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~------------------~-~~-~~~~~~~~~~~-   60 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA------------------D-PD-LLEYFLELIKP-   60 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh------------------h-hh-hHHHHHHhhcc-
Confidence            35789999999999999999998865    677777654322100                  0 00 12222222111 


Q ss_pred             CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHH
Q 025970          107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER  154 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R  154 (245)
                       ....+++|.+-........+..+. ..  .++.-|++..|......+
T Consensus        61 -~~~~i~iDEiq~~~~~~~~lk~l~-d~--~~~~~ii~tgS~~~~l~~  104 (128)
T PF13173_consen   61 -GKKYIFIDEIQYLPDWEDALKFLV-DN--GPNIKIILTGSSSSLLSK  104 (128)
T ss_pred             -CCcEEEEehhhhhccHHHHHHHHH-Hh--ccCceEEEEccchHHHhh
Confidence             234577887643333333333332 22  256788888888766644

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.75  E-value=2.6e-05  Score=68.36  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      +|..|+|+||||+|||++++.|++.++.+++.++
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd   79 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence            4678999999999999999999999999888776

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.75  E-value=2.4e-05  Score=65.77  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      +|+|.||+|||||+++..|++.++..+|++|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence            479999999999999999999999999999864

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PLN02748 tRNA dimethylallyltransferase

Probab=97.72  E-value=3.3e-05  Score=69.04  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=32.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      ..+.+|+|.||+|||||+++..|++.++..+|++|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            456689999999999999999999999999999985

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.72  E-value=1.9e-05  Score=60.51  Aligned_cols=36  Identities=22%  Similarity=0.435  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++++++.+..++-+|+|+||+||||||+.+.++.-.
T Consensus        18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            345566666788899999999999999999998643

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=97.71  E-value=0.00023  Score=56.90  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++|+|-|+|||||.|+.|.+.+
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l   25 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREAL   25 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHH
Confidence            478999999999999999998877

>PRK06761 hypothetical protein; Provisional

Probab=97.70  E-value=3e-05  Score=64.95  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=24.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      +++|+|.|+|||||||+++.|++.++.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            458999999999999999999999864

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.69  E-value=3.6e-05  Score=56.60  Aligned_cols=28  Identities=32%  Similarity=0.579  Sum_probs=24.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      +..++|.||||+||||+++.|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4578999999999999999999988543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.68  E-value=0.00079  Score=59.12  Aligned_cols=26  Identities=31%  Similarity=0.615  Sum_probs=23.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .|.+|+++|++|+||||.+..||..+
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999765

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.67  E-value=1.8e-05  Score=63.03  Aligned_cols=33  Identities=33%  Similarity=0.559  Sum_probs=27.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      +++.++.+..++-+++|+||+||||||+.+.|-
T Consensus        17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             EecCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            345566677888899999999999999999985

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.66  E-value=4.5e-05  Score=66.98  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      |..|+|+||||+|||++++.|++.++.+++.++-
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            6789999999999999999999999988877753

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.64  E-value=8.8e-05  Score=64.00  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=25.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      .+..+++|.|||||||||+++.|+..++.
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34678899999999999999999999865

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=4.1e-05  Score=64.40  Aligned_cols=29  Identities=24%  Similarity=0.572  Sum_probs=25.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ..+.+|.+.||||.|||++|+.||+++.+
T Consensus       175 t~NRliLlhGPPGTGKTSLCKaLaQkLSI  203 (423)
T KOG0744|consen  175 TWNRLILLHGPPGTGKTSLCKALAQKLSI  203 (423)
T ss_pred             eeeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence            45679999999999999999999999853

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=7e-05  Score=63.22  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .+..|+|.||.+||||.++-.||+++|.++||+|.+
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            356899999999999999999999999999999876

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.61  E-value=6.7e-05  Score=62.57  Aligned_cols=44  Identities=20%  Similarity=0.166  Sum_probs=31.0

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      +..+.+++......+.-++|.|+||+|||++++.|++.+|.+++
T Consensus         7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640         7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            33344444332223345679999999999999999999987766

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.60  E-value=0.00011  Score=63.53  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=33.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRS   68 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~   68 (245)
                      .++|..+.|.||||+|||.+|+.+++++|..+|  +..++...
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk  187 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE  187 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence            467889999999999999999999999987655  55555433

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00041  Score=63.40  Aligned_cols=127  Identities=17%  Similarity=0.283  Sum_probs=69.0

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh--HHHHHHHHHcCCc-----------------hHHHHHHHHH-cC
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT--GDMLRSAVAAKTP-----------------LGIKAKEAMD-KG   87 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~--~~li~~~~~~~~~-----------------~~~~i~~~l~-~~   87 (245)
                      ..+|.-|+++||||||||+++++||..-+..++++  .+++..+......                 +...+...-. ++
T Consensus       465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~  544 (693)
T KOG0730|consen  465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG  544 (693)
T ss_pred             CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC
Confidence            35666789999999999999999999998877766  3444443322111                 0111211111 11


Q ss_pred             ---CCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           88 ---ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        88 ---~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                         .-+.+.++..++. .+......+++++=+-...-   ..++.++-. ...+|.+||+..|+......+.+..
T Consensus       545 g~~~~v~~RVlsqLLt-EmDG~e~~k~V~ViAATNRp---d~ID~ALlR-PGRlD~iiyVplPD~~aR~~Ilk~~  614 (693)
T KOG0730|consen  545 GSSSGVTDRVLSQLLT-EMDGLEALKNVLVIAATNRP---DMIDPALLR-PGRLDRIIYVPLPDLEARLEILKQC  614 (693)
T ss_pred             CCccchHHHHHHHHHH-HcccccccCcEEEEeccCCh---hhcCHHHcC-CcccceeEeecCccHHHHHHHHHHH
Confidence               1223334444332 23444334444443321111   122223322 2467999999999987777666543

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00011  Score=67.64  Aligned_cols=45  Identities=22%  Similarity=0.262  Sum_probs=34.9

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ++=++..-......++++|+.||||+|||++++.+|+.+|-.++.
T Consensus       336 lEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR  380 (782)
T COG0466         336 LEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR  380 (782)
T ss_pred             HHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence            344444444455677899999999999999999999999865553

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.58  E-value=6.5e-05  Score=56.23  Aligned_cols=28  Identities=29%  Similarity=0.485  Sum_probs=24.9

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ++|.|+||+|||++++.|++.++..++.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~   29 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIR   29 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence            6899999999999999999999876643

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.58  E-value=6.6e-05  Score=55.00  Aligned_cols=38  Identities=21%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ++.+....+++.+|++.|.-||||||+++.+++.+|..
T Consensus         5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen    5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            33333344677899999999999999999999988764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.57  E-value=0.00034  Score=60.55  Aligned_cols=32  Identities=31%  Similarity=0.499  Sum_probs=27.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      ...+++||||+||||+++.++...+..+...+
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s   80 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALS   80 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence            34579999999999999999999987766553

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.56  E-value=0.00011  Score=60.29  Aligned_cols=39  Identities=31%  Similarity=0.483  Sum_probs=29.5

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+++..+.....+..+|.|+|+||+||||+...|...|
T Consensus        15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            345555555555678899999999999999999998877

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.56  E-value=0.00016  Score=65.82  Aligned_cols=35  Identities=34%  Similarity=0.520  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ...+..+.+|+||+||||||..+.|++.+|+.+..
T Consensus        41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            33445588999999999999999999999987663

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.55  E-value=0.00019  Score=52.86  Aligned_cols=26  Identities=38%  Similarity=0.636  Sum_probs=20.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ....++|.|++|+|||++++.+++.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999999976

>PRK10646 ADP-binding protein; Provisional

Probab=97.52  E-value=0.00021  Score=54.38  Aligned_cols=46  Identities=22%  Similarity=0.180  Sum_probs=36.3

Q ss_pred             ChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           12 PSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ++.+-...++..+....+++.+|++.|.-||||||+++.|++.+|+
T Consensus         9 ~s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646          9 PDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3444455566655555566789999999999999999999999986

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.51  E-value=0.0011  Score=56.03  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.-++|+|+||+||||+|+.+++.+
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            44568999999999999998887765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.50  E-value=8.5e-05  Score=59.15  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=30.8

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .++..+.++.+...+-+|+||+||||||+.+.|-..
T Consensus        21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhh
Confidence            456777788888999999999999999999988543

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00016  Score=66.59  Aligned_cols=49  Identities=24%  Similarity=0.334  Sum_probs=36.9

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc--ceeehHHH
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL--CHLATGDM   65 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~--~~i~~~~l   65 (245)
                      ++=+|.+=......++++||.||||+|||++++.+|..+|-  +.+|++-+
T Consensus       424 LEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~  474 (906)
T KOG2004|consen  424 LEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM  474 (906)
T ss_pred             HHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence            33344444446678899999999999999999999999975  45565433

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.49  E-value=0.00012  Score=56.88  Aligned_cols=23  Identities=35%  Similarity=0.661  Sum_probs=20.5

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .|+|+|+||+||||+.+.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            47999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PHA03134 thymidine kinase; Provisional

Probab=97.49  E-value=0.01  Score=50.73  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=22.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+-.+|.|.|+.|.||||.++.|+..
T Consensus        11 ~~~~rvYlDG~~GvGKTT~~~~l~~~   36 (340)
T PHA03134         11 VRIVRIYLDGAYGIGKSTTGRVMASA   36 (340)
T ss_pred             ccEEEEEEeCCCcCCHHHHHHHHHHh
Confidence            34557899999999999999988864

>PHA03135 thymidine kinase; Provisional

Probab=97.48  E-value=0.0062  Score=52.11  Aligned_cols=26  Identities=31%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+-.+|.|.|+.|+||||+++.|++.
T Consensus         8 ~~~~rIYlDG~~GvGKTT~~~~l~~~   33 (343)
T PHA03135          8 AQLIRVYLDGPFGIGKTSMLNEMPDH   33 (343)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            44568899999999999999999975

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.47  E-value=9.3e-05  Score=55.48  Aligned_cols=24  Identities=38%  Similarity=0.580  Sum_probs=21.5

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .|+|.||+||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            378999999999999999998764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.47  E-value=0.00015  Score=53.81  Aligned_cols=31  Identities=45%  Similarity=0.713  Sum_probs=25.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---Cccee
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHL   60 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i   60 (245)
                      .+..++|+|+||+||||+++.++..+   +..++
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~   51 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFL   51 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE
Confidence            34578899999999999999999987   54444

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.46  E-value=0.0078  Score=54.36  Aligned_cols=159  Identities=17%  Similarity=0.154  Sum_probs=90.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      ....|.+|+|.|..+|||....++|.+.++=-.+.+-.+     ...+                ..+.-...+-.....+
T Consensus       295 ~~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~-----~~Pt----------------~~E~~~~~lwRf~~~l  353 (493)
T TIGR03708       295 FRKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI-----AAPT----------------DEEKAQHYLWRFWRHI  353 (493)
T ss_pred             hCCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC-----CCcC----------------HHHHcCcHHHHHHHhC
Confidence            467799999999999999999999998885333322111     0000                0111111122222222


Q ss_pred             CCC-CceEEc-------------CCCC------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCc
Q 025970          107 SCE-KGFILD-------------GFPR------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGR  166 (245)
Q Consensus       107 ~~~-~~~iid-------------g~p~------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~  166 (245)
                      +.. .-.|+|             |+..      ...+...|++.+...|... +-++|++|.++..+|+..|..++... 
T Consensus       354 P~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~i-vKf~LhIsk~EQ~~R~~~r~~~p~k~-  431 (493)
T TIGR03708       354 PRRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIV-VKFWLHIDKEEQLRRFEERENTPFKR-  431 (493)
T ss_pred             CCCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEE-EEEEEEcCHHHHHHHHHHHhcCCccC-
Confidence            211 112222             2211      2244456677777776644 78899999999999999997544321 


Q ss_pred             cccccCCCCCCCCCCCCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCChh
Q 025970          167 SYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPPK  233 (245)
Q Consensus       167 ~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~e  233 (245)
                                               =..+++.++  .+...|......+...-+ ....|++|.++...-
T Consensus       432 -------------------------WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~  476 (493)
T TIGR03708       432 -------------------------YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRY  476 (493)
T ss_pred             -------------------------CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHH
Confidence                                     122333333  334566655555554433 245899999876543

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.46  E-value=0.00029  Score=51.55  Aligned_cols=39  Identities=18%  Similarity=0.272  Sum_probs=30.6

Q ss_pred             HHHHHHHhcc--CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           17 MTELLRRFKC--SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        17 ~~~~~~~~~~--~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +-+++..+..  .|.+|.++.+.|++|+|||.+++.||+.+
T Consensus        37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            3334444443  56789999999999999999999999874

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.46  E-value=0.0001  Score=62.83  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=27.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      +..|+|.|+||+||||+++.|++.+|.+++.
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r   94 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVR   94 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence            3358999999999999999999999987763

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PLN02796 D-glycerate 3-kinase

Probab=97.45  E-value=0.00011  Score=63.08  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDM   65 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~l   65 (245)
                      .+|.+|.|.|++||||||+++.|...+.     ...++.|+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf  139 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF  139 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence            4788999999999999999999998874     345666554

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.45  E-value=0.00021  Score=61.36  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+++........++.+|.|+|+|||||||++..|...+
T Consensus        42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            445665554445678899999999999999999987766

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.44  E-value=0.00021  Score=59.61  Aligned_cols=39  Identities=28%  Similarity=0.385  Sum_probs=33.7

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++++.......++.+|-|+|+||+||||+...|...|
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            467777776677788899999999999999999998887

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.44  E-value=0.00014  Score=64.19  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=27.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      -..+|+|+|++||||||+++.|++.||...+
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            4668999999999999999999999988754

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.43  E-value=7.6e-05  Score=60.73  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=30.2

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+++.++.+..++-+++|.||+||||||+.+.+|--
T Consensus        17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345566677788999999999999999999999843

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.42  E-value=0.00014  Score=65.71  Aligned_cols=34  Identities=26%  Similarity=0.453  Sum_probs=29.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      +.|.-|+|+||||+|||.+++.+|..++.+++.+
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            4566789999999999999999999999887654

>PRK12377 putative replication protein; Provisional

Probab=97.42  E-value=0.0054  Score=50.68  Aligned_cols=38  Identities=21%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRS   68 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~   68 (245)
                      ...++|+|+||+|||+++.+++..+   |.  .++++.+++..
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~  143 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR  143 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence            3468999999999999999999887   33  46666666553

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.42  E-value=0.00034  Score=52.61  Aligned_cols=45  Identities=22%  Similarity=0.207  Sum_probs=35.5

Q ss_pred             hhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           13 SVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      +.+...++........+++.+|++.|.-||||||+++.+++.+|+
T Consensus         7 ~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802           7 DEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            344444555544456678899999999999999999999999985

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.41  E-value=0.00019  Score=60.79  Aligned_cols=35  Identities=14%  Similarity=0.187  Sum_probs=30.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .+++|+|+||.|||||.+|-.||++ +..+||+|.+
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            3458999999999999999999999 5589999865

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.0003  Score=58.76  Aligned_cols=43  Identities=21%  Similarity=0.432  Sum_probs=34.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcce--eehHHHHHHHHHcCCc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCH--LATGDMLRSAVAAKTP   75 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~--i~~~~li~~~~~~~~~   75 (245)
                      -|+++||||.|||++++++|..-|..+  +|..+++.+++.....
T Consensus       168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk  212 (439)
T KOG0739|consen  168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK  212 (439)
T ss_pred             eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence            578999999999999999999987544  4667888887764433

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.41  E-value=0.00015  Score=63.86  Aligned_cols=39  Identities=26%  Similarity=0.562  Sum_probs=31.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLR   67 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~   67 (245)
                      .+|.-|+|+||||+|||++++.++..++..++  +..++..
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~  203 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ  203 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence            45677899999999999999999999986654  4444443

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00068  Score=50.98  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=24.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      -++.+|+|+|.+||||||++-+|.+.+
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L   55 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQAL   55 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHH
Confidence            568899999999999999999998877

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.39  E-value=0.00015  Score=56.65  Aligned_cols=38  Identities=32%  Similarity=0.401  Sum_probs=32.1

Q ss_pred             HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++++.++....++-+++++||+||||||+.+.+....
T Consensus        15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence            45677777777888899999999999999999987654

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.39  E-value=0.00015  Score=63.65  Aligned_cols=40  Identities=20%  Similarity=0.256  Sum_probs=31.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDML   66 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li   66 (245)
                      ...+|.+|.|.|+.||||||+++.|...+.     ...|+.|+..
T Consensus       208 ~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        208 DDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            345789999999999999999999987662     4566776653

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=97.39  E-value=0.00056  Score=59.18  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=69.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .+...+++.|++|||||++.+.|.+. +..++++....+..   ++.+|..-.      ..-....+...+...+.....
T Consensus       139 ~~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~~------~qpsQ~~Fe~~l~~~l~~~~~  208 (345)
T PRK11784        139 AQFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLGG------PQPSQKDFENLLAEALLKLDP  208 (345)
T ss_pred             ccCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCCC------CCcchHHHHHHHHHHHHcCCC
Confidence            44557889999999999999999865 77899987765541   222222110      011123445556666665554


Q ss_pred             CCceEEcCCCCCHHHH---HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          109 EKGFILDGFPRTVVQA---EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~---~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .+.+++++--+..-..   ..|...+.   ..  -.|++++|.+..++|+..-.
T Consensus       209 ~~~i~vE~Es~~IG~~~lP~~l~~~m~---~~--~~v~i~~~~e~Rv~~l~~~Y  257 (345)
T PRK11784        209 ARPIVVEDESRRIGRVHLPEALYEAMQ---QA--PIVVVEAPLEERVERLLEDY  257 (345)
T ss_pred             CCeEEEEeccccccCccCCHHHHHHHh---hC--CEEEEECCHHHHHHHHHHHh
Confidence            5566676532222111   11112222   22  47899999999999998764

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.39  E-value=0.00036  Score=59.33  Aligned_cols=32  Identities=34%  Similarity=0.544  Sum_probs=26.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH   59 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~   59 (245)
                      +.++..++|+||||+|||++++.++..++..+
T Consensus        27 ~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        27 QEALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            34455688999999999999999999987653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.38  E-value=0.00064  Score=60.61  Aligned_cols=27  Identities=26%  Similarity=0.466  Sum_probs=24.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+|.+|+|+|++|+||||++..|+..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999999998777

>PRK09087 hypothetical protein; Validated

Probab=97.37  E-value=0.00028  Score=57.51  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDML   66 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li   66 (245)
                      .+.++|+|++|||||++++.+++..+..+++...+.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~   79 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG   79 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence            456899999999999999999999998899886443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.36  E-value=0.00011  Score=59.35  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=29.2

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+++.++..-+++-+++|.||+||||||+.+.+.-
T Consensus        19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            34556666778889999999999999999999873

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.34  E-value=6.8e-05  Score=64.58  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=26.7

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      +.++.+..++-+++|.||+||||||+.+++|
T Consensus        22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA   52 (352)
T COG3842          22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIA   52 (352)
T ss_pred             ecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence            3445566788899999999999999999999

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.34  E-value=0.00022  Score=62.93  Aligned_cols=34  Identities=24%  Similarity=0.535  Sum_probs=29.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+|.-++|.||||+|||++++.++...+..++..
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            4677889999999999999999999998766543

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.34  E-value=0.00037  Score=60.03  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=27.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ..++..++|+||||+||||+++.++..++..+.
T Consensus        48 ~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         48 GEALDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            344557889999999999999999999987543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.34  E-value=0.00024  Score=55.26  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=24.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .+++++.|+|++||||||+++.|...+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            4566899999999999999999987763

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.33  E-value=0.0001  Score=60.79  Aligned_cols=46  Identities=24%  Similarity=0.283  Sum_probs=35.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh----CcceeehHHH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY----CLCHLATGDM   65 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~----~~~~i~~~~l   65 (245)
                      +++.++++.+++.+++|.||.||||||+.+.|+.-+    |-..++-.++
T Consensus        17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i   66 (258)
T COG1120          17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI   66 (258)
T ss_pred             EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence            445666777889999999999999999999999755    3455544333

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.00015  Score=58.72  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      -+++.++.+-.++-.+.|+|++||||||+++.|+-
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence            46777888888999999999999999999999984

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.33  E-value=0.00025  Score=62.05  Aligned_cols=34  Identities=29%  Similarity=0.558  Sum_probs=28.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+|.-++|+||||+|||++++.++..++..++..
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            3466799999999999999999999998766544

Many proteins may score above the trusted cutoff because an internal

>PRK04195 replication factor C large subunit; Provisional

Probab=97.32  E-value=0.00041  Score=62.95  Aligned_cols=33  Identities=33%  Similarity=0.655  Sum_probs=29.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ++..++|+||||+||||+++.|++.+++.++..
T Consensus        38 ~~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            366889999999999999999999999877654

>PF13245 AAA_19: Part of AAA domain

Probab=97.32  E-value=0.00028  Score=47.24  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=18.5

Q ss_pred             CCcEEEEECCCCCChh-HHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKG-TQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKS-t~~~~La~~~   55 (245)
                      .+.+++|.|+|||||| |+++.++..+
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456788999999999 5555555443

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.32  E-value=0.00024  Score=61.08  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=27.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ...|+|+|++|+||||+++.|+..++..++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            568999999999999999999999998775

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.32  E-value=0.00015  Score=59.56  Aligned_cols=21  Identities=38%  Similarity=0.512  Sum_probs=18.7

Q ss_pred             EECCCCCChhHHHHHHHhHhC
Q 025970           36 LIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        36 i~G~~GsGKSt~~~~La~~~~   56 (245)
                      |+||+||||||+|+.+++.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999884

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.00061  Score=58.26  Aligned_cols=53  Identities=19%  Similarity=0.379  Sum_probs=41.1

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHHHHHcCCchHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRSAVAAKTPLGIKA   80 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~~~~~~~~~~~~i   80 (245)
                      ..+|+=++++||||+|||-+|++.|...+..+|  ..+.++++.+..+..+-+.+
T Consensus       182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel  236 (406)
T COG1222         182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL  236 (406)
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence            366777899999999999999999999987655  55688888777655444333

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.00019  Score=65.06  Aligned_cols=34  Identities=32%  Similarity=0.613  Sum_probs=30.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+|.=++|.||||||||.+|+.+|.++|+++++.
T Consensus       221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i  254 (802)
T KOG0733|consen  221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI  254 (802)
T ss_pred             CCCCceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence            4556678999999999999999999999998876

>PRK06526 transposase; Provisional

Probab=97.31  E-value=0.0027  Score=52.67  Aligned_cols=39  Identities=18%  Similarity=0.295  Sum_probs=27.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRS   68 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~   68 (245)
                      .+..++|+||||+|||+++..|+...   |.  .++++.+++..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~  140 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR  140 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence            45578999999999999999987654   33  34444444443

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.30  E-value=0.00025  Score=62.82  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=28.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      ...++|+||||+|||++++.|++.++.+++.++
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id  140 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD  140 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence            356899999999999999999999998877654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.30  E-value=0.00013  Score=51.99  Aligned_cols=38  Identities=16%  Similarity=0.122  Sum_probs=27.7

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .+..+...++|.|++||||||+++.+.  -|-..+..+++
T Consensus        10 l~i~~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di   47 (107)
T cd00820          10 VDVYGKVGVLITGDSGIGKTELALELI--KRKHRLVGDDN   47 (107)
T ss_pred             EEEcCCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence            344567789999999999999999987  23344444443

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.30  E-value=0.00022  Score=56.80  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=27.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC-----cceeehH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATG   63 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~   63 (245)
                      |.+|+|.||+|+||||.+.+||..+.     +.++++|
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D   38 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD   38 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence            67899999999999999999998772     3455554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.29  E-value=7.7e-05  Score=66.93  Aligned_cols=30  Identities=27%  Similarity=0.544  Sum_probs=24.8

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +.++|.++++.||||+||||+.+.|..+|-
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~t   94 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFT   94 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence            445666666999999999999999998873

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.29  E-value=8.4e-05  Score=63.66  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=27.1

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      ++.++.....+-+++|.||+||||||+.+.+|
T Consensus        19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IA   50 (338)
T COG3839          19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA   50 (338)
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            44455566778899999999999999999999

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.27  E-value=0.00038  Score=62.45  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ...+..+..|+||+||||||..+.|++.+|+.++.
T Consensus       106 ~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E  140 (634)
T KOG1970|consen  106 PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE  140 (634)
T ss_pred             cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence            44456688999999999999999999999987763

>PRK08116 hypothetical protein; Validated

Probab=97.27  E-value=0.0052  Score=51.40  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=29.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRS   68 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~   68 (245)
                      +.-++|.|++|+|||.++..++..+   +  +.++++.+++..
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~  156 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR  156 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            3357899999999999999998875   3  346677666554

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.27  E-value=0.00021  Score=51.15  Aligned_cols=22  Identities=32%  Similarity=0.670  Sum_probs=19.6

Q ss_pred             EEEECCCCCChhHHHHHHHhHh
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      |+|.|+||+|||++++.|++.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999998654

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.27  E-value=0.0061  Score=46.32  Aligned_cols=128  Identities=14%  Similarity=0.064  Sum_probs=71.1

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHHHHHHHcCCchHHH--HHH-HHHcCC-CC---CHHH---H
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDMLRSAVAAKTPLGIK--AKE-AMDKGE-LV---SDDL---V   95 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~--i~~-~l~~~~-~~---~~~~---~   95 (245)
                      -+++.+|++-|.+-||||+++..|.+.+.  +.++-+|..+.......-..+.-  ... ....|. ++   +.-+   .
T Consensus        20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~   99 (205)
T COG3896          20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA   99 (205)
T ss_pred             CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence            35567999999999999999999998884  45666655544332211111100  000 001111 00   1111   1


Q ss_pred             HHHHHHHHcCC-CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970           96 VGIIDQAMKKP-SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus        96 ~~~l~~~l~~~-~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                      ..-....+... +.+..+|.|.+..+..........+.   ..+..+|-+.||.|++.+|-..|
T Consensus       100 ~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~---g~~v~~VGV~~p~E~~~~Re~rr  160 (205)
T COG3896         100 MHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLE---GCRVWMVGVHVPDEEGARRELRR  160 (205)
T ss_pred             HHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHh---CCceEEEEeeccHHHHHHHHhhc
Confidence            11112222222 23456888988777655544444432   23457889999999999996654

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.26  E-value=0.00042  Score=54.09  Aligned_cols=29  Identities=31%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ....+..++|.|++|+|||++.+.+.+.+
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44567899999999999999999887766

>PF05729 NACHT: NACHT domain

Probab=97.24  E-value=0.00028  Score=53.87  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++|.|++|+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            67999999999999999999877

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.24  E-value=0.00046  Score=58.72  Aligned_cols=39  Identities=28%  Similarity=0.396  Sum_probs=32.0

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...+++.+.....++.+|.|+|++||||||++..|+..+
T Consensus        20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            445667666666778899999999999999999988765

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.21  E-value=0.00034  Score=63.74  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=29.7

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ...|.-++|+||||+|||++++.++...+.+++.+
T Consensus        85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            34566789999999999999999999998877654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.21  E-value=0.00037  Score=61.61  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=27.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..|+|.||||+|||++++.|++.++.++...
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~  147 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA  147 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence            4789999999999999999999998877644

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0036  Score=56.35  Aligned_cols=34  Identities=29%  Similarity=0.494  Sum_probs=31.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      +.|+=|+++||||.|||-+|+++|-+-|++++.+
T Consensus       335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence            5688899999999999999999999999998865

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=97.20  E-value=0.0072  Score=46.89  Aligned_cols=115  Identities=12%  Similarity=0.128  Sum_probs=65.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCc---ceeehHHHHHHHHHcC-----------Cch----HHHHHHHHHcCCCCCHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCL---CHLATGDMLRSAVAAK-----------TPL----GIKAKEAMDKGELVSDDL   94 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~---~~i~~~~li~~~~~~~-----------~~~----~~~i~~~l~~~~~~~~~~   94 (245)
                      +|+|+|..+|||-|++..|.+.++.   .++...+-+.......           .++    -..+....+.-..-.++.
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~   80 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF   80 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence            5899999999999999999999874   2455544444433321           111    111111111111112233


Q ss_pred             HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970           95 VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT  156 (245)
Q Consensus        95 ~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~  156 (245)
                      +.+.+...+.    ...|||++. +.......|.+.+   | ..-..|-+.+++++..+|.-
T Consensus        81 F~r~~~~~~~----~~v~iIsD~-Rr~~dv~~f~~~~---g-~~~~~VRV~AseetR~~Rgw  133 (182)
T TIGR01223        81 FCRKIVEGIS----QPIWLVSDT-RRVSDIQWFREAY---G-AVTQTVRVVALEQSRQQRGW  133 (182)
T ss_pred             HHHHHHhccC----CCEEEEeCC-CcccHHHHHHHHc---C-CceEEEEEecCHHHHHHHHH
Confidence            3333332221    247888886 5555666555542   2 23478999999999999963

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.19  E-value=0.0005  Score=62.03  Aligned_cols=37  Identities=16%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      +.++-.....|..++|+||||+||||+|+.+++.++.
T Consensus        26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3333335555667899999999999999999998865

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.19  E-value=0.00037  Score=56.36  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=26.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .|..++|+|+||+||||+++.|+.  ...+++.|..
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~   44 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMS   44 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCC--CCEEEecccc
Confidence            367899999999999999999962  3556666543

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.17  E-value=0.00044  Score=53.86  Aligned_cols=27  Identities=22%  Similarity=0.482  Sum_probs=24.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      -..+++.||+|+|||.+++.|++.+..
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            357899999999999999999999984

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.17  E-value=0.0021  Score=56.14  Aligned_cols=37  Identities=24%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDM   65 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~l   65 (245)
                      .++.+|+|.||.|+||||-...||.+|.       +.+|++|..
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY  244 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY  244 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence            3477999999999999998888888875       456777543

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.16  E-value=0.00046  Score=61.55  Aligned_cols=33  Identities=36%  Similarity=0.658  Sum_probs=28.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      .+|.-++|+||||+|||++++.++..++..++.
T Consensus       215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~  247 (438)
T PTZ00361        215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLR  247 (438)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence            466788999999999999999999998766553

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.16  E-value=0.00025  Score=56.03  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|.|+.||||||+.+.|+-.+
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455666677788899999999999999999998544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.14  E-value=0.012  Score=50.52  Aligned_cols=23  Identities=39%  Similarity=0.723  Sum_probs=21.3

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++|.||||+||||+++.+++.+
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALAREL   60 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999887

>PHA02244 ATPase-like protein

Probab=97.13  E-value=0.00064  Score=58.93  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .-++|.|+||+|||++++.++..++.+++.+..+
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l  153 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI  153 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence            3467899999999999999999999988876543

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.12  E-value=0.00041  Score=53.93  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=28.9

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHH
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVI   51 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~L   51 (245)
                      |+++.++.+...+-+|.|+|.+||||||+.+++
T Consensus        20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCi   52 (256)
T COG4598          20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI   52 (256)
T ss_pred             hhhcceeeecCCCCEEEEecCCCCchhHHHHHH
Confidence            566777778888999999999999999999876

>PRK06620 hypothetical protein; Validated

Probab=97.12  E-value=0.00045  Score=55.81  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=25.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ..++|+||+|||||++++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            457899999999999999999887765555

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.12  E-value=0.00028  Score=51.89  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ++|.|+||.||||+++.||+.+|..+..
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~R   29 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFKR   29 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence            6799999999999999999999876553

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PHA02624 large T antigen; Provisional

Probab=97.11  E-value=0.0011  Score=60.87  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             hHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           15 DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .....+++.+....+....|+|.||||+||||+++.|.+.+|-..+++
T Consensus       415 ~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        415 DVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            344455555555555566999999999999999999999996556665

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.10  E-value=0.0016  Score=52.93  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=28.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDM   65 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~l   65 (245)
                      .+..++|+|++|+|||++++.++...     .+.+++....
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            34467899999999999999999876     5566766554

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.10  E-value=0.00073  Score=43.15  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=19.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...+|+|+.||||||+..++.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999988763

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.09  E-value=0.00053  Score=57.10  Aligned_cols=27  Identities=19%  Similarity=0.241  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ++..++|+|++||||||+++.++..+.
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            345789999999999999999998875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.09  E-value=0.00055  Score=54.71  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=22.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      |..|.|.|++||||||+.+++...+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999988775

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.09  E-value=0.00028  Score=55.21  Aligned_cols=32  Identities=28%  Similarity=0.264  Sum_probs=27.0

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      ++.++.+-.++-+++|.|+.||||||+.+.+.
T Consensus        11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34555667888899999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.09  E-value=0.0003  Score=56.94  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456667777888899999999999999999998554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.07  E-value=0.00072  Score=54.77  Aligned_cols=39  Identities=26%  Similarity=0.232  Sum_probs=29.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDML   66 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li   66 (245)
                      ...+..++|+|++|+|||++++.++....     +.++++..+.
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            34466789999999999999999987652     4466665543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.07  E-value=0.013  Score=52.71  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh-------CcceeehHHHHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY-------CLCHLATGDMLRSAV   70 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~-------~~~~i~~~~li~~~~   70 (245)
                      -++|+|++|+|||++++.++..+       .+.+++..+++....
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~  176 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV  176 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence            47899999999999999998874       346778777665543

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.07  E-value=0.00034  Score=56.33  Aligned_cols=36  Identities=31%  Similarity=0.455  Sum_probs=30.5

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456666777888899999999999999999998644

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.07  E-value=0.00058  Score=49.33  Aligned_cols=22  Identities=23%  Similarity=0.435  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .|+|.|++||||||+.+.|...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999999864

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.07  E-value=0.00089  Score=56.13  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATG   63 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~   63 (245)
                      .++.+|+|+|++|+||||.+..||..+   |  +.++++|
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D  109 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD  109 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            456789999999999999999998777   3  3355654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.07  E-value=0.00034  Score=56.32  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=30.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456666777888899999999999999999998654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=97.06  E-value=0.018  Score=45.27  Aligned_cols=120  Identities=16%  Similarity=0.187  Sum_probs=62.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh------CcceeehHHHHHHHHHcCC--------chHHHHHHH---HHcCCCCCHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY------CLCHLATGDMLRSAVAAKT--------PLGIKAKEA---MDKGELVSDDLV   95 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~------~~~~i~~~~li~~~~~~~~--------~~~~~i~~~---l~~~~~~~~~~~   95 (245)
                      .++++|.|.+||||+|+.+.-..      .+.++..|+.+-.......        .+...++..   +....-+|+++ 
T Consensus         3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv-   81 (291)
T KOG4622|consen    3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV-   81 (291)
T ss_pred             eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh-
Confidence            46899999999999999875433      1345555665422111100        111111111   12222233321 


Q ss_pred             HHHHHHHHcCC-CCC--CceE-EcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           96 VGIIDQAMKKP-SCE--KGFI-LDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        96 ~~~l~~~l~~~-~~~--~~~i-idg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                           .++... +.+  +..+ +|...--.-....|.++...+|+.+ -+||+..+-++++++=+.|.
T Consensus        82 -----rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciF-G~Iflas~ide~LqaNS~Rs  143 (291)
T KOG4622|consen   82 -----RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIF-GIIFLASGIDEALQANSHRS  143 (291)
T ss_pred             -----eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCee-eeeehhhhHHHHHHhccccc
Confidence                 122221 222  2333 3332111222334556777788777 58999999999998866664

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.06  E-value=0.00033  Score=56.32  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            456666677788899999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0005  Score=55.37  Aligned_cols=40  Identities=28%  Similarity=0.385  Sum_probs=34.4

Q ss_pred             HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      .++++.+....+.+-+-+|.||.||||||++..|+-.-++
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y   56 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY   56 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence            5788888888889999999999999999999999854433

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.05  E-value=0.00052  Score=51.55  Aligned_cols=23  Identities=52%  Similarity=0.892  Sum_probs=20.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++|.|+|+.||||||++++|...
T Consensus         2 krimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCC
Confidence            36899999999999999999753

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.05  E-value=0.00064  Score=53.64  Aligned_cols=28  Identities=25%  Similarity=0.307  Sum_probs=24.0

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...+..++|.|++||||||+.+.|...+
T Consensus        22 v~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          22 VEARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3456789999999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.04  E-value=0.00026  Score=57.11  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445556666788899999999999999999999654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.04  E-value=0.00032  Score=57.40  Aligned_cols=36  Identities=33%  Similarity=0.407  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            345566677788899999999999999999998543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.04  E-value=0.00034  Score=56.29  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456666677888899999999999999999999654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13695 putative NTPase; Provisional

Probab=97.04  E-value=0.00063  Score=53.03  Aligned_cols=24  Identities=33%  Similarity=0.535  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      |.|+|+|++||||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            679999999999999999987664

>COG3911 Predicted ATPase [General function prediction only]

Probab=97.03  E-value=0.00058  Score=51.26  Aligned_cols=28  Identities=32%  Similarity=0.580  Sum_probs=23.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ++++|+|.||+||||+.+.|+.. |+..+
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~~-Gfatv   37 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALARA-GFATV   37 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHc-Cceee
Confidence            58899999999999999999865 66443

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.00065  Score=57.27  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      ...|+++||.|||||-+|+.||+.+++|+-=+|
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD  129 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD  129 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence            447899999999999999999999999877554

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.02  E-value=0.00038  Score=56.56  Aligned_cols=36  Identities=33%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456666777888999999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.02  E-value=0.00032  Score=56.41  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=27.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++ +++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            345555655667 99999999999999999998543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08181 transposase; Validated

Probab=97.02  E-value=0.0073  Score=50.50  Aligned_cols=40  Identities=28%  Similarity=0.460  Sum_probs=30.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRSA   69 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~~   69 (245)
                      .+..++|+|++|+|||.++..++...   |  +.++++.+++...
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            34568999999999999999998644   4  4567777776653

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.02  E-value=0.0004  Score=57.09  Aligned_cols=36  Identities=28%  Similarity=0.477  Sum_probs=30.5

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            456666777888899999999999999999998554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.02  E-value=0.00066  Score=52.77  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=25.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh---C--cceeehH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATG   63 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~   63 (245)
                      ++++.|+|||||||++..|+..+   |  +.+++.|
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            57899999999999999998876   3  3456665

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.02  E-value=0.00038  Score=55.97  Aligned_cols=36  Identities=33%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445556667788899999999999999999998544

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.02  E-value=0.00032  Score=56.43  Aligned_cols=36  Identities=31%  Similarity=0.426  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++...+..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            445556666788899999999999999999998654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.02  E-value=0.00074  Score=57.87  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=23.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +|.+|+|+||+||||||++..|+..+
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999999877

>TIGR00763 lon ATP-dependent protease La

Probab=97.01  E-value=0.0012  Score=63.34  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=28.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      .+++.++|.||||+|||++++.|++.++..++.
T Consensus       345 ~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~  377 (775)
T TIGR00763       345 MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVR  377 (775)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence            345589999999999999999999999766553

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.01  E-value=0.00031  Score=56.76  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus        19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            445555666788899999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.01  E-value=0.00066  Score=54.18  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +|+|.||+||||||+.+.|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999998887664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.01  E-value=0.00054  Score=60.24  Aligned_cols=41  Identities=22%  Similarity=0.468  Sum_probs=29.5

Q ss_pred             ChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           12 PSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+.+.+.++....   .-=|+|.|+||+||||+|++||+-|
T Consensus       247 edY~L~dkl~eRL~er---aeGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         247 EDYGLSDKLKERLEER---AEGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             hhcCCCHHHHHHHHhh---hcceEEecCCCCChhHHHHHHHHHH
Confidence            3455555555555422   2246899999999999999999887

>CHL00176 ftsH cell division protein; Validated

Probab=97.01  E-value=0.00077  Score=62.93  Aligned_cols=34  Identities=32%  Similarity=0.513  Sum_probs=29.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..|.-++|.||||+|||++++.++...+.+++..
T Consensus       214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            4566799999999999999999999998877754

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.01  E-value=0.00059  Score=61.88  Aligned_cols=30  Identities=33%  Similarity=0.618  Sum_probs=25.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ++|.-++|+||||+|||++++.+++.++..
T Consensus       214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            456678999999999999999999987543

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.00  E-value=0.00061  Score=55.95  Aligned_cols=40  Identities=25%  Similarity=0.477  Sum_probs=32.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeeh--HHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT--GDMLRSAV   70 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~--~~li~~~~   70 (245)
                      |..+++.||||.|||.+|++||.+.+.+++.+  -.++-++.
T Consensus       151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV  192 (368)
T COG1223         151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV  192 (368)
T ss_pred             cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence            77899999999999999999999998887654  34544443

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.00  E-value=0.00042  Score=56.55  Aligned_cols=36  Identities=28%  Similarity=0.338  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            455566667788899999999999999999998554

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.99  E-value=0.00089  Score=54.90  Aligned_cols=34  Identities=12%  Similarity=0.117  Sum_probs=27.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGD   64 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~   64 (245)
                      +..++|+||+|+|||++++.++....     +.+++.+.
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            34789999999999999999887654     46677655

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.99  E-value=0.00032  Score=56.76  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+..++-+++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            345555667788899999999999999999998544

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.99  E-value=0.00037  Score=56.11  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus        14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            345556667788899999999999999999998654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd04155 Arl3 Arl3 subfamily

Probab=96.98  E-value=0.00087  Score=51.71  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=22.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|++||||||+.+.|..
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~   36 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLAS   36 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhc
Confidence            4467899999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK06893 DNA replication initiation factor; Validated

Probab=96.98  E-value=0.001  Score=54.29  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=27.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATG   63 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~   63 (245)
                      ..+.++|+|+||+|||++++.++..+     +..++++.
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            34578999999999999999999775     55566663

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=96.98  E-value=0.00086  Score=50.82  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=19.9

Q ss_pred             CC-ccEEEEEecCHHHHHHHHhCCcc
Q 025970          136 TK-IDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       136 ~~-~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      .. |+++|||++|++++++|+++|+.
T Consensus        65 ~~~pdl~IYL~~~~e~~~~RI~kRgR   90 (146)
T PF01712_consen   65 PKSPDLIIYLDASPETCLERIKKRGR   90 (146)
T ss_dssp             CHH-SEEEEEE--HHHHHHHHHHCTT
T ss_pred             hccCCeEEEEeCCHHHHHHHHHHhCC
Confidence            55 99999999999999999999963

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>PRK09183 transposase/IS protein; Provisional

Probab=96.98  E-value=0.0017  Score=54.01  Aligned_cols=39  Identities=26%  Similarity=0.433  Sum_probs=28.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDML   66 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li   66 (245)
                      ..++..++|+||+|+|||+++..|+...   |  +.++++.+++
T Consensus        99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183         99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            3456678999999999999999996553   3  3355555554

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.98  E-value=0.00039  Score=56.10  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=27.9

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+++.-.++.+++|.|+.||||||+.+.|+..+
T Consensus         4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177          4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3445566778899999999999999999998544

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.97  E-value=0.00037  Score=55.77  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|.|+.||||||+.+.|+-.+
T Consensus        15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455556666788899999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.97  E-value=0.00043  Score=56.02  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445566666788899999999999999999998644

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.97  E-value=0.00042  Score=56.62  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|.|++||||||+.+.|+..+
T Consensus        20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445556677788899999999999999999998665

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.97  E-value=0.00034  Score=57.24  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345556667788899999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.97  E-value=0.00042  Score=56.53  Aligned_cols=33  Identities=30%  Similarity=0.357  Sum_probs=27.4

Q ss_pred             HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus         4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770         4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344556778899999999999999999998654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.97  E-value=0.0017  Score=53.99  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=27.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ....--++++||||-||||+|+.+|.++|...-
T Consensus        49 ~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k   81 (332)
T COG2255          49 GEALDHVLLFGPPGLGKTTLAHIIANELGVNLK   81 (332)
T ss_pred             CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence            344457899999999999999999999987433

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.97  E-value=0.00088  Score=59.60  Aligned_cols=33  Identities=30%  Similarity=0.389  Sum_probs=27.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+..++|+||||+||||+++.+++..+..++..
T Consensus        35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            344678899999999999999999887665543

>PRK14974 cell division protein FtsY; Provisional

Probab=96.97  E-value=0.00084  Score=57.86  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +|.+|+|+|++|+||||.+..|+..+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999999888888765

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.96  E-value=0.00043  Score=57.31  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+..
T Consensus        21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            55666777788889999999999999999999854

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.96  E-value=0.00055  Score=53.21  Aligned_cols=36  Identities=31%  Similarity=0.632  Sum_probs=30.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++..-.++.+++|.|++||||||+.+.|+-.+
T Consensus        17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            456666777888899999999999999999998654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.96  E-value=0.00044  Score=56.38  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445666677888899999999999999999999654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.96  E-value=0.0004  Score=54.09  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+..++-+++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            455566677788899999999999999999998543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.96  E-value=0.00037  Score=56.43  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus        20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            345555666788899999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.96  E-value=0.00045  Score=54.27  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            455666677788899999999999999999999654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.95  E-value=0.0004  Score=56.97  Aligned_cols=36  Identities=31%  Similarity=0.472  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            345556677888899999999999999999998544

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.95  E-value=0.00039  Score=55.62  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            345555666788899999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.95  E-value=0.00057  Score=55.61  Aligned_cols=36  Identities=31%  Similarity=0.602  Sum_probs=31.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+..+
T Consensus        18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            566667777888899999999999999999998655

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.95  E-value=0.00044  Score=56.24  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            445556677888899999999999999999998543

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.94  E-value=0.00056  Score=55.62  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            4566667777888899999999999999999998554

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.94  E-value=0.0014  Score=57.27  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=26.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ....+..++|+||+|+||||+++.+++.++.
T Consensus        34 ~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         34 LGRIHHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             cCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            3445667899999999999999999998864

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.94  E-value=0.0058  Score=54.52  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=26.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh-------CcceeehHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY-------CLCHLATGD   64 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~-------~~~~i~~~~   64 (245)
                      +.+|+|.||+|+||||.+..|+..+       .+.++++|.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~  261 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT  261 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence            5689999999999999888887654       245666654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.94  E-value=0.00041  Score=56.40  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            455566666788899999999999999999999765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.94  E-value=0.00036  Score=56.02  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=28.9

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +..++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44555566788899999999999999999999543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00089  Score=56.89  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      -|+.|+++||.|+|||-+|++||+..|.|++-+
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            488999999999999999999999888877743

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.94  E-value=0.00037  Score=56.94  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            455566677788899999999999999999998654

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.94  E-value=0.00083  Score=50.53  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++|.|.|+.+|||||+++.|.+.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999998776

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.93  E-value=0.00092  Score=52.72  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=30.3

Q ss_pred             HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970           18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      .-+++.++.+..++-.+++.||+||||||+.+.+|
T Consensus        18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A   52 (259)
T COG4525          18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA   52 (259)
T ss_pred             hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence            44566777788888999999999999999999987

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.93  E-value=0.00057  Score=50.80  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=25.5

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...+++.+++|+|++||||||+.+.|+..+
T Consensus         6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEEccCCCccccceeeecccc
Confidence            344677799999999999999999998665

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.93  E-value=0.00045  Score=57.47  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            455666677888999999999999999999998553

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.93  E-value=0.015  Score=54.08  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=27.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ..+.+..++|+|++|+||||+++.|++.++.
T Consensus        34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             hCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            5566778899999999999999999999976

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.93  E-value=0.00048  Score=53.30  Aligned_cols=36  Identities=31%  Similarity=0.623  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|+.||||||+++.|+-.+
T Consensus        16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455566677788899999999999999999998554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.92  E-value=0.00044  Score=56.76  Aligned_cols=36  Identities=28%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445556666788899999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.92  E-value=0.00092  Score=50.66  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      +.=++|.|++|+||||++..|.++ |+.+++-|.
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~   46 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLVADDR   46 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence            456799999999999999998865 777776653

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.92  E-value=0.00053  Score=56.63  Aligned_cols=36  Identities=33%  Similarity=0.452  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455666677788899999999999999999998654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.91  E-value=0.00046  Score=56.68  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=29.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++..-.++-+++|+|++||||||+.+.|+-.
T Consensus        15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34555566678889999999999999999999864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.91  E-value=0.0013  Score=56.16  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=26.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH   59 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~   59 (245)
                      ....|..+++.|+||+||||+++.+++.++..+
T Consensus        39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence            334466777799999999999999999876543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.91  E-value=0.00065  Score=54.96  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+++.|+-.+
T Consensus        19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            566677777888899999999999999999998654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.91  E-value=0.00047  Score=53.97  Aligned_cols=36  Identities=25%  Similarity=0.514  Sum_probs=30.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++-+++|.|++||||||+++.|+-.+
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            455566677888899999999999999999998654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd00879 Sar1 Sar1 subfamily

Probab=96.91  E-value=0.0018  Score=50.92  Aligned_cols=36  Identities=19%  Similarity=0.389  Sum_probs=28.0

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..+++..++.. .+...|+|.|++||||||+.++|..
T Consensus         6 ~~~~~~~~~~~-~~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879           6 FYNVLSSLGLY-NKEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HHHHHHHhhcc-cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            35667766644 4456779999999999999999874

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.91  E-value=0.0016  Score=62.30  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      .++.+++|+||||+||||+++.+++.++..++.
T Consensus       347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~  379 (784)
T PRK10787        347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR  379 (784)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            456689999999999999999999999876643

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.90  E-value=0.00053  Score=54.85  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|+|++||||||+.+.++-.+
T Consensus        20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            556667777889999999999999999999998654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.90  E-value=0.00048  Score=57.00  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=29.8

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+-.++-+++|.|++||||||+++.|+-.+
T Consensus        19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45566677788899999999999999999999654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.90  E-value=0.0018  Score=58.18  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ....+..++|+||+|+||||+|+.|++.++..
T Consensus        36 ~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            44446678999999999999999999998764

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.90  E-value=0.0014  Score=59.83  Aligned_cols=27  Identities=30%  Similarity=0.513  Sum_probs=24.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.++++|.||||+||||+++.|++.+
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHH
Confidence            355699999999999999999999876

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.90  E-value=0.019  Score=50.98  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=28.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh-----C--cceeehHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY-----C--LCHLATGDMLRS   68 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~-----~--~~~i~~~~li~~   68 (245)
                      .-++|+|++|+|||++++.++..+     +  +.++++.++...
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~  180 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND  180 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence            347899999999999999988765     2  457777766544

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.90  E-value=0.00052  Score=56.70  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=30.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            445566677788899999999999999999998654

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.90  E-value=0.00045  Score=56.57  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            345555666788899999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.90  E-value=0.00064  Score=53.02  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=30.5

Q ss_pred             HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .|+++.+++.-.....+.|+|..||||||++++|+-.
T Consensus        26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm   62 (267)
T COG4167          26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence            3555666667777889999999999999999999854

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.90  E-value=0.00061  Score=55.11  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=30.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++-+++|.|++||||||+.+.|+...
T Consensus        19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            556666777888899999999999999999998654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.90  E-value=0.00039  Score=56.30  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=29.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            345555666788899999999999999999998554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.89  E-value=0.001  Score=51.70  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=21.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      +++|+|++|||||++|..++...+-
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~   25 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGG   25 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCC
Confidence            3689999999999999999987653

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.89  E-value=0.0011  Score=53.43  Aligned_cols=26  Identities=31%  Similarity=0.540  Sum_probs=17.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+.+|.||||+||||+...+...+
T Consensus        16 ~~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   16 SNGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCChHHHHHHHHHHh
Confidence            33378999999999997666555443

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.89  E-value=0.002  Score=50.56  Aligned_cols=40  Identities=30%  Similarity=0.578  Sum_probs=30.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRSA   69 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~~   69 (245)
                      .+..++|.|++|+|||.++..++.++     .+.++++.+++...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            45679999999999999999998655     34677888877653

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.89  E-value=0.00044  Score=54.14  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|.|+.||||||+.+.|+..+
T Consensus        15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344555666788899999999999999999998543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.89  E-value=0.00055  Score=53.32  Aligned_cols=36  Identities=39%  Similarity=0.622  Sum_probs=29.5

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++..-.++.+++|.|++||||||+.+.|+-.+
T Consensus        17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            445555666788899999999999999999998654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.89  E-value=0.00046  Score=57.32  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455566677788899999999999999999998654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.89  E-value=0.00049  Score=56.59  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|.|++||||||+++.|+-.+
T Consensus        18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445556666788899999999999999999999654

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.0075  Score=56.05  Aligned_cols=44  Identities=25%  Similarity=0.447  Sum_probs=36.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh--HHHHHHHHHcC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT--GDMLRSAVAAK   73 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~--~~li~~~~~~~   73 (245)
                      -+.-|.++||||+|||.++..++...++.+|++  .+++.+.+.+.
T Consensus       700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaS  745 (952)
T KOG0735|consen  700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGAS  745 (952)
T ss_pred             cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhccc
Confidence            366789999999999999999999999998887  36666665543

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=96.89  E-value=0.00096  Score=59.58  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHH
Q 025970           14 VDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSP   49 (245)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~   49 (245)
                      ......++..++.+..++-+++|+|++||||||+.+
T Consensus        15 e~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        15 QTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             HHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence            344566777778888889999999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.88  E-value=0.00048  Score=55.24  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            445556666788899999999999999999998543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.88  E-value=0.00058  Score=55.77  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++-+++|+|++||||||+++.|+-.+
T Consensus        17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            455666677788899999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.88  E-value=0.0015  Score=53.90  Aligned_cols=45  Identities=16%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             ccCCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHH
Q 025970           25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSA   69 (245)
Q Consensus        25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~   69 (245)
                      +....+|.+|++.|..||||||++++|-.++.     -.+|++|--.++.
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v   62 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV   62 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence            33567899999999999999999999988772     3467777766654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.88  E-value=0.001  Score=63.47  Aligned_cols=34  Identities=32%  Similarity=0.600  Sum_probs=28.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+|.-|+|+||||+|||++++.++...+..+++.
T Consensus       485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v  518 (733)
T TIGR01243       485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV  518 (733)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            3455689999999999999999999998776654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.88  E-value=0.032  Score=47.59  Aligned_cols=105  Identities=21%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK  104 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~  104 (245)
                      .+.-++|+|++|+|||+++.+++..+   |.  .++.+.++++...           ..+..+.      +...    +.
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk-----------~~~~~~~------~~~~----l~  213 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK-----------NSISDGS------VKEK----ID  213 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH-----------HHHhcCc------HHHH----HH
Confidence            44578999999999999999999887   43  4567766665431           1122211      1112    22


Q ss_pred             CCCCCCceEEcCCCCC----HHHHHHHHHHHHhc--CCCccEEEEEecCHHHHHHHHh
Q 025970          105 KPSCEKGFILDGFPRT----VVQAEKLDEMLEKQ--GTKIDKVLNFAIDDSILEERIT  156 (245)
Q Consensus       105 ~~~~~~~~iidg~p~~----~~~~~~l~~~~~~~--~~~~~~vi~L~~~~e~~~~R~~  156 (245)
                      ......-.|||.+...    +.....|..++...  ...| .+|-=..+.+.+.+++.
T Consensus       214 ~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~-ti~TSNl~~~el~~~~~  270 (306)
T PRK08939        214 AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELP-TFFTSNFDFDELEHHLA  270 (306)
T ss_pred             HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHh
Confidence            2223356888876432    22223334343321  2333 67777788888888774

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.00098  Score=60.69  Aligned_cols=34  Identities=29%  Similarity=0.517  Sum_probs=28.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .++..++|.||||+|||.++++++...+..+++.
T Consensus       274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v  307 (494)
T COG0464         274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV  307 (494)
T ss_pred             CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence            4566899999999999999999999777766654

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.88  E-value=0.0006  Score=55.04  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++...+.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            455666677788899999999999999999998554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.88  E-value=0.015  Score=52.46  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=28.6

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh-----C--cceeehHHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY-----C--LCHLATGDMLRS   68 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~-----~--~~~i~~~~li~~   68 (245)
                      -++|+|++|+|||++++.++..+     +  +.+++..++...
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~  192 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND  192 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            47899999999999999999876     2  446777766544

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.87  E-value=0.00071  Score=54.21  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=30.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++....++-+++|.|++||||||+.+.|+-.+
T Consensus        23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             cccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            566777777888899999999999999999998554

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.87  E-value=0.00058  Score=57.11  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455666677888899999999999999999998654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.87  E-value=0.00048  Score=56.98  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++++-.++-+++|+|++||||||+.+.|+-.+
T Consensus        15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445566677888899999999999999999998654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.86  E-value=0.00046  Score=56.71  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            445566677888899999999999999999999654

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.86  E-value=0.00073  Score=54.89  Aligned_cols=36  Identities=31%  Similarity=0.602  Sum_probs=30.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            566666777888899999999999999999998654

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=96.86  E-value=0.00052  Score=57.03  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++.+..++-+++|.|++||||||+.+.|+-.
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            45566667778889999999999999999999954

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.86  E-value=0.00045  Score=55.25  Aligned_cols=36  Identities=28%  Similarity=0.543  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+..++.+++|.|++||||||+.+.|+-.+
T Consensus        22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence            455666677888899999999999999999998654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.86  E-value=0.023  Score=53.77  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=27.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ....+..++|+|++|+||||+++.|++.++..
T Consensus        34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            44456677899999999999999999999763

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.85  E-value=0.00064  Score=56.06  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            456666777888999999999999999999998543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.85  E-value=0.00058  Score=56.50  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++-+++|+|++||||||+++.|+-.+
T Consensus        19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            455666677788899999999999999999998653

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.85  E-value=0.00048  Score=53.17  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=29.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345555666788899999999999999999998543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.85  E-value=0.00051  Score=54.80  Aligned_cols=36  Identities=28%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345555666788899999999999999999998554

>PRK10908 cell division protein FtsE; Provisional

Probab=96.84  E-value=0.00054  Score=55.54  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455566677888899999999999999999998654

>cd04163 Era Era subfamily

Probab=96.84  E-value=0.001  Score=50.40  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..+|++.|++||||||+++.|..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999999874

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.84  E-value=0.00067  Score=54.10  Aligned_cols=37  Identities=30%  Similarity=0.535  Sum_probs=31.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +++.++.+.+++-+..|+||.|+||||+.+.|+-.+.
T Consensus        16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~   52 (259)
T COG4559          16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS   52 (259)
T ss_pred             eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence            4556667778888999999999999999999998774

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.84  E-value=0.00054  Score=56.66  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|.|++||||||+++.|+-.+
T Consensus        19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            455566677788899999999999999999998654

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.0027  Score=53.38  Aligned_cols=41  Identities=29%  Similarity=0.535  Sum_probs=33.1

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRS   68 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~   68 (245)
                      .++|....|+||||.|||-+|+.+++.+|+.++  +++.+..+
T Consensus       163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k  205 (388)
T KOG0651|consen  163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK  205 (388)
T ss_pred             CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence            367889999999999999999999999976544  55555444

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.00088  Score=58.87  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=26.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      =-++.||||+||||+..++|..+++.+.++
T Consensus       237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             cceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            347999999999999999999998876654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.83  E-value=0.001  Score=48.00  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|+|.+|+||||+.+.|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.83  E-value=0.0021  Score=58.40  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=27.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ..+.+..++|+||+|+||||+++.|++.++..
T Consensus        39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            44556788999999999999999999999764

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.83  E-value=0.0006  Score=56.98  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.
T Consensus        36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            45556666678889999999999999999999863

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.83  E-value=0.0005  Score=54.50  Aligned_cols=34  Identities=32%  Similarity=0.450  Sum_probs=28.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +++.++..-.++.+++|+|++||||||+.+.|+-
T Consensus        22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3455556667888999999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.83  E-value=0.00062  Score=55.73  Aligned_cols=31  Identities=39%  Similarity=0.549  Sum_probs=25.7

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHH
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      +..+.+...+.+++++|++||||||..+++-
T Consensus        18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMIN   48 (309)
T COG1125          18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN   48 (309)
T ss_pred             eeeeEEecCCeEEEEECCCCCcHHHHHHHHh
Confidence            4445566788899999999999999998874

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.82  E-value=0.00099  Score=50.52  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++|+|+||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998766

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.82  E-value=0.00055  Score=55.70  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            345555666788899999999999999999998654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.82  E-value=0.00058  Score=54.80  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+..++-+++|+|++||||||+.+.|+..+
T Consensus        17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345556667788899999999999999999998654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.82  E-value=0.00054  Score=56.89  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=30.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+++.|+..+
T Consensus        21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455666677888999999999999999999999654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.82  E-value=0.00061  Score=55.91  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=30.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            455566666788899999999999999999999654

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.82  E-value=0.00059  Score=56.73  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455666677788899999999999999999998654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.81  E-value=0.00058  Score=56.15  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455666677888899999999999999999998654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.81  E-value=0.00059  Score=56.07  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++...+..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445555666788899999999999999999998554

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.81  E-value=0.015  Score=55.95  Aligned_cols=38  Identities=18%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      +.++....+.+..++|.|++|+||||+++.|++.+++.
T Consensus        27 L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         27 LSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            33333355666778999999999999999999999753

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.81  E-value=0.00062  Score=56.22  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ++..++.+-.++-+++|.|++||||||+.+.|+-
T Consensus        18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4455666778888999999999999999999994

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.81  E-value=0.00074  Score=54.57  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            455666677788899999999999999999998554

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.81  E-value=0.0024  Score=51.86  Aligned_cols=27  Identities=30%  Similarity=0.418  Sum_probs=22.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .-+++..++|.|+||+|||++|..++.
T Consensus        15 Gip~gs~~li~G~~GsGKT~l~~q~l~   41 (226)
T PF06745_consen   15 GIPKGSVVLISGPPGSGKTTLALQFLY   41 (226)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCcHHHHHHHHH
Confidence            336788999999999999999987653

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=96.81  E-value=0.00063  Score=56.24  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.
T Consensus        22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            45566667788889999999999999999999853

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.81  E-value=0.00067  Score=56.02  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++..+.+-.++-+++|.|++||||||+.+.|+-.
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            45566667788889999999999999999999853

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.80  E-value=0.0022  Score=51.50  Aligned_cols=30  Identities=27%  Similarity=0.274  Sum_probs=26.2

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +...+++|+|.|++||||||+.+.+...++
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            556788999999999999999999987754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.80  E-value=0.0007  Score=56.71  Aligned_cols=36  Identities=19%  Similarity=0.199  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            456666677788899999999999999999998654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.80  E-value=0.0012  Score=51.73  Aligned_cols=29  Identities=24%  Similarity=0.501  Sum_probs=24.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .-.++.+++|.|+.||||||+.+.|+-.+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            33577799999999999999999998543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.80  E-value=0.00055  Score=56.92  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=29.5

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+..++-+++|+|++||||||+.+.|+-.+
T Consensus        27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            445555666788899999999999999999998643

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.80  E-value=0.00063  Score=56.27  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=28.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++..+.+-.++-+++|+|++||||||+++.|+-.
T Consensus        20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            34555556678889999999999999999999853

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.80  E-value=0.00063  Score=54.44  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++-+++|.|++||||||+.+.|+..+
T Consensus        16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            345556667788899999999999999999998654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.80  E-value=0.0012  Score=63.04  Aligned_cols=33  Identities=30%  Similarity=0.606  Sum_probs=28.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      .+|.-++|+||||+||||+++.++..++..++.
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~  242 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS  242 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence            456678999999999999999999999876553

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.80  E-value=0.00066  Score=55.67  Aligned_cols=36  Identities=22%  Similarity=0.384  Sum_probs=29.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++.+++|+|+.||||||+.+.|+-.+
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            344555566788899999999999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.79  E-value=0.00079  Score=53.47  Aligned_cols=36  Identities=28%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            556666677788899999999999999999998654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.79  E-value=0.00063  Score=53.33  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+..-.++.+++|.|++||||||+.+.|+..+
T Consensus        14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            445555666788899999999999999999998654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=96.79  E-value=0.0013  Score=57.69  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=25.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .+|.+|.|+|.+||||||++..|...+.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            5788999999999999999999998875

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.79  E-value=0.00073  Score=55.59  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +++.++.+-.++-++.|+||.||||||+.+.+.-
T Consensus        19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            5667777778888999999999999999998864

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.79  E-value=0.0007  Score=55.97  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+++.|+-.+
T Consensus        19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            445556666788899999999999999999999543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.79  E-value=0.0008  Score=55.72  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            556667777888899999999999999999998644

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.79  E-value=0.00072  Score=55.34  Aligned_cols=36  Identities=31%  Similarity=0.526  Sum_probs=30.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-++.|.|++||||||+.+.|+-.+
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            445566667788899999999999999999999654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.79  E-value=0.00074  Score=55.30  Aligned_cols=36  Identities=28%  Similarity=0.575  Sum_probs=30.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            456666677888899999999999999999999654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.00068  Score=54.81  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=25.7

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ++...+++-.++|+|++||||||+.+.|..
T Consensus        23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence            344557788999999999999999999985

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.78  E-value=0.00067  Score=55.03  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=30.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455566666788899999999999999999998654

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PF13479 AAA_24: AAA domain

Probab=96.78  E-value=0.0011  Score=53.63  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=25.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      +.+..++|+|+||+||||++..+   -+..+|+++
T Consensus         1 ~~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E   32 (213)
T PF13479_consen    1 KKPIKILIYGPPGSGKTTLAASL---PKPLFIDTE   32 (213)
T ss_pred             CCceEEEEECCCCCCHHHHHHhC---CCeEEEEeC
Confidence            35778999999999999999887   244566664

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=96.78  E-value=0.00068  Score=56.59  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456666777888899999999999999999998654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.77  E-value=0.0018  Score=60.37  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=27.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH   59 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~   59 (245)
                      ...+..+++|.||+|+||||+++.|+..++..+
T Consensus       106 ~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~  138 (637)
T TIGR00602       106 ENAPKRILLITGPSGCGKSTTIKILSKELGIQV  138 (637)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence            334455789999999999999999999887644

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.77  E-value=0.046  Score=50.72  Aligned_cols=37  Identities=16%  Similarity=0.168  Sum_probs=29.5

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh-------CcceeehHHHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY-------CLCHLATGDMLRSA   69 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~-------~~~~i~~~~li~~~   69 (245)
                      -++|+|++|+|||.+++.++...       .+.++++.+++...
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el  359 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF  359 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence            37899999999999999998865       34688887776554

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.77  E-value=0.00064  Score=54.10  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=29.0

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++..-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44455566788899999999999999999998654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.77  E-value=0.00075  Score=53.86  Aligned_cols=35  Identities=31%  Similarity=0.487  Sum_probs=29.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++..-.++-+++|.|++||||||+.+.|+-.
T Consensus        15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45566667788889999999999999999999865

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.77  E-value=0.0014  Score=52.07  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=27.1

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44566778899999999999999999998654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.77  E-value=0.0008  Score=55.52  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=30.5

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            456666777888899999999999999999998543

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.76  E-value=0.0015  Score=55.16  Aligned_cols=26  Identities=27%  Similarity=0.539  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+|+|.||+||||||++..|+..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999988765

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=96.76  E-value=0.00066  Score=56.72  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++-+++|.|++||||||+.+.|+-.+
T Consensus        35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            445566666788899999999999999999998654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.76  E-value=0.00075  Score=55.80  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++.+++|.|++||||||+++.|+-.+
T Consensus        19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249         19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            456666677788899999999999999999998654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.76  E-value=0.0007  Score=56.04  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=29.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-
T Consensus        21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4555666678888999999999999999999984

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.76  E-value=0.00072  Score=55.76  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++++-.++-+++|+|++||||||+.+.|+-.
T Consensus        17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            45566667778889999999999999999999854

>PLN03025 replication factor C subunit; Provisional

Probab=96.76  E-value=0.0018  Score=55.64  Aligned_cols=23  Identities=43%  Similarity=0.772  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++|.||||+||||+++.+++.+
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999887

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.76  E-value=0.00071  Score=56.92  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=30.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456666677888899999999999999999998654

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.76  E-value=0.00076  Score=54.41  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+..-.++-+++|.|++||||||+.+.|+..+
T Consensus        26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            445555666788899999999999999999998654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.76  E-value=0.0007  Score=56.64  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=29.5

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++.+-.++-+++|+|++||||||+.+.|+-.
T Consensus        28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            44556667788889999999999999999999864

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.75  E-value=0.00084  Score=54.82  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=26.0

Q ss_pred             ccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus         5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184         5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3455678899999999999999999998654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=96.75  E-value=0.0008  Score=55.77  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++..-.++-+++|+|++||||||+++.|+-.+
T Consensus        18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456666777888899999999999999999998543

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.75  E-value=0.018  Score=49.62  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRS   68 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~   68 (245)
                      ..++|.|++|+|||+++.+++..+     .+.++++.+++..
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~  225 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI  225 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence            568999999999999999999876     3456777777654

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0041  Score=58.75  Aligned_cols=45  Identities=13%  Similarity=0.358  Sum_probs=37.4

Q ss_pred             CCCCCc-EEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHH
Q 025970           27 SSKPDK-RLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVA   71 (245)
Q Consensus        27 ~~~~~~-~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~   71 (245)
                      +|.+|. .++|.||+|+|||-+|+.||+.+.     +..|++++++.++.-
T Consensus       516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV  566 (786)
T COG0542         516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV  566 (786)
T ss_pred             CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence            556665 778899999999999999999984     678899988877654

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.75  E-value=0.00072  Score=56.58  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=27.9

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3344455788899999999999999999998654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=96.75  E-value=0.00056  Score=57.18  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=29.5

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            344555666788899999999999999999998654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.74  E-value=0.00063  Score=56.33  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=29.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            344555566788899999999999999999998654

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0015  Score=61.34  Aligned_cols=36  Identities=31%  Similarity=0.514  Sum_probs=32.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..+.|.=++|+||||+|||-+|+++|.+-|++++++
T Consensus       340 GAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv  375 (774)
T KOG0731|consen  340 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV  375 (774)
T ss_pred             CCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence            556777889999999999999999999999999876

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.74  E-value=0.0023  Score=58.26  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=26.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ....+..++|+||||+||||+++.|++.++.
T Consensus        32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4456678899999999999999999998854

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.74  E-value=0.0008  Score=55.01  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++.+-.++.+++|.|++||||||+.+.|+-.+
T Consensus        16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            344555566788899999999999999999998654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.74  E-value=0.00072  Score=56.23  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=30.2

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   52 (258)
T PRK13548         17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL   52 (258)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455566677788899999999999999999998654

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=96.73  E-value=0.00077  Score=57.43  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456666677888899999999999999999998654

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.73  E-value=0.00064  Score=55.29  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          41 VSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33455788899999999999999999998643

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=96.73  E-value=0.0071  Score=51.64  Aligned_cols=117  Identities=15%  Similarity=0.195  Sum_probs=67.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .+...+++.|++|+|||.+++.|++. |..++++....+..   ++.+|..     ..+..-+...+...+...+...+.
T Consensus       125 ~~~~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hr---Gs~fG~~-----~~~~qpsq~~fe~~L~~~l~~~~~  195 (311)
T TIGR03167       125 QPFPLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLANHR---GSSFGAL-----GLGPQPSQKRFENALAEALRRLDP  195 (311)
T ss_pred             CCCceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHHhc---CcccCCC-----CCCCCCchHHHHHHHHHHHHhCCC
Confidence            44456679999999999999999866 78889887665431   2221111     000000123344455555555544


Q ss_pred             CCceEEcCCCCCHHHH---HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          109 EKGFILDGFPRTVVQA---EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~---~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ...+++.+-.......   ..|...+.   .  ..+|.+++|.+.+++|+..-.
T Consensus       196 ~~~i~~e~es~~ig~~~~p~~l~~~m~---~--~~~i~i~~~~e~Rv~~l~~~Y  244 (311)
T TIGR03167       196 GRPIFVEDESRRIGRVALPDALFEAMR---A--APLVELEASLEERVERLVEEY  244 (311)
T ss_pred             CceEEEEeCchhhccccCCHHHHHHHh---h--CCEEEEECCHHHHHHHHHHHh
Confidence            4556665432322111   11222222   2  248899999999999998753

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.73  E-value=0.00061  Score=56.88  Aligned_cols=36  Identities=31%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|.|++||||||+++.|+-.+
T Consensus        26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            345555666788899999999999999999998654

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.73  E-value=0.0014  Score=50.19  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +|.|.|++||||||++..|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.73  E-value=0.0015  Score=66.48  Aligned_cols=39  Identities=15%  Similarity=0.353  Sum_probs=32.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLR   67 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~   67 (245)
                      .+|.=|+++||||+|||.+|++||...++++|  +..+++.
T Consensus      1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            45667899999999999999999999988766  4456553

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.73  E-value=0.0012  Score=53.03  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=28.1

Q ss_pred             HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+-.++-+++|.|+.||||||+.+.|+..+
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455666788899999999999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.72  E-value=0.00079  Score=55.66  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++.+-.++-+++|.|++||||||+++.|+-.
T Consensus        20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244         20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45566667778889999999999999999999854

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.72  E-value=0.0017  Score=53.19  Aligned_cols=27  Identities=37%  Similarity=0.406  Sum_probs=22.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.|..++|+|++||||||++..|-..+
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            456789999999999999888776555

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.72  E-value=0.00077  Score=61.86  Aligned_cols=36  Identities=28%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++...+++..++|.|++||||||+++.|...+
T Consensus       350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            556666677889999999999999999999998766

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.72  E-value=0.00093  Score=55.23  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++..+.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            455666677788899999999999999999999654

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.72  E-value=0.00084  Score=56.23  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+-.+
T Consensus        24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455666677788899999999999999999998664

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0074  Score=49.53  Aligned_cols=49  Identities=14%  Similarity=0.354  Sum_probs=34.5

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc--eeehHHHHHHHHHcCC
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC--HLATGDMLRSAVAAKT   74 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~--~i~~~~li~~~~~~~~   74 (245)
                      +.-+|++  =++++||||+|||.++++.|......  .+..+..+.+.+..+.
T Consensus       184 igidppr--gvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp  234 (408)
T KOG0727|consen  184 IGIDPPR--GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP  234 (408)
T ss_pred             hCCCCCc--ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence            3345555  45799999999999999999887544  4445566666655443

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.71  E-value=0.00072  Score=57.19  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-.++-+++|.|++||||||+.+.|+..+
T Consensus        26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455566666788899999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		3e-68
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		4e-68
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		7e-68
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		3e-66
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		3e-66
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		5e-66
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		2e-61
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		1e-53
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		2e-52
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		2e-51
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		3e-51
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		2e-50
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-50
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-50
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-50
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		3e-50
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		3e-50
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		6e-50
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		9e-50
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-49
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		4e-49
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		9e-49
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-48
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		2e-47
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		7e-47
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		2e-46
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		3e-46
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		5e-41
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		3e-39
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		1e-33
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		5e-31
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		5e-31
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		2e-26
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		2e-24
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		2e-24
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		2e-23
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		3e-22
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		3e-19
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		3e-17
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		8e-14
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		1e-13
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		1e-13

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score =  254 bits (649), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 155/208 (74%), Gaps = 1/208 (0%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+G LVSD
Sbjct: 6   RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 93  DLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V +I D+    P+C+ GFILDGFPRT+ QAEKLD+ML++QGT ++K +   +DD +L
Sbjct: 66  DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RITGR IHPASGRSYH  F PPK    DDVTGE L+QR DD A  LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTE 185
Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEV 239
           P++D+Y K G+ A + A +PP  V  ++
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWADI 213

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 116/234 (49%), Positives = 159/234 (67%)
Query: 8   LEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLR 67
           LE+  ++D++ EL RR+ C SKPD R + +G PGSGKGTQS  +K  +C CHL+TGD+LR
Sbjct: 6   LENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLR 65
Query: 68  SAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKL 127
            A   KT LG+K K  +++G+LV D +V+ ++D+ +K P C+KGFILDG+PR V QAE L
Sbjct: 66  EAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDL 125
Query: 128 DEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187
           +++L+K  TK+D V  F + D +L  RI+GR IH  SGR YH  F PPKV   DDVT EP
Sbjct: 126 NKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEP 185
Query: 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQK 241
           LIQR+DD   VLK RL  F  +T P+I YY  K +L  L A +P  ++  ++ +
Sbjct: 186 LIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQ 239

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score =  253 bits (646), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 154/207 (74%), Gaps = 1/207 (0%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+G LVSD
Sbjct: 6   RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 93  DLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V +I D+    P+C+ GFILDGFPRT+ QAEKLD+ML++QGT ++K +   +DD +L
Sbjct: 66  DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RITGR IHPASGRSYH  F PPK    DDVTGE L+QR DD A  LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTE 185
Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVE 238
           P++D+Y K G+ A + A +PP  V  +
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWAD 212

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 113/212 (53%), Positives = 156/212 (73%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R VL+GPPG+GKGTQ+P +   +C+CHLATGDMLR+ VA+ + LG K K  MD G+LVSD
Sbjct: 18  RAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++V+ +I++ ++ P C+ GF+LDGFPRTV QAE LD+++EK+  K+D V+ F+I DS+L 
Sbjct: 78  EMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            RITGR IHP SGRSYH +F PPK    DD+TGEPLI+R DD  + LK RLEA+H QT P
Sbjct: 138 RRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTP 197
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +++YY+K+G+ + + A + P  V   +    S
Sbjct: 198 LVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 156/212 (73%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R VL+GPPG+GKGTQ+P + + +C+CHLATGDMLR+ VA+ + LG K K  MD G+LVSD
Sbjct: 18  RAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++VV +I++ ++ P C+ GF+LDGFPRTV QAE LD+++EK+  K+D V+ F+I DS+L 
Sbjct: 78  EMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            RITGR IHP SGRSYH +F PPK    DD+TGEPLI+R DD  + LK RL+A+H QT P
Sbjct: 138 RRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTP 197
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +I+YY K+G+ + + A + P  V   +    S
Sbjct: 198 LIEYYRKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score =  247 bits (630), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 116/208 (55%), Positives = 153/208 (73%), Gaps = 1/208 (0%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+G LVSD
Sbjct: 6   RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 93  DLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V +I D+    P+C+ GFIL GFPRT+ QAEKLD+ML++QGT ++K +   +DD +L
Sbjct: 66  DIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RITGR IHPASGRSYH  F PPK    DDVTGE L+Q  DD A  LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTE 185
Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEV 239
           P++D+Y K G+ A + A +PP  V  ++
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWADI 213

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/211 (51%), Positives = 148/211 (70%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            L+LIG PGSGKGTQ   IK EY L HL+TGDMLR A+   T +G++AK  ++ G  V D
Sbjct: 7   NLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++V+G++ +      C  GF+LDGFPRT+ QAE L ++L + G  +  V+ F IDDS + 
Sbjct: 67  EIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ERI+GR  HPASGR YH K+ PPK  G DDVTGEPL+ R DD A+ +K RL+ FHKQT P
Sbjct: 127 ERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAP 186
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           ++ +Y   G+L +++A+ PPKEVT +++K+L
Sbjct: 187 LVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 143/213 (67%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +VL+G PG+GKGTQ+  I ++Y + H++TGDM R+A+   T LG+KAK  MD+G LV D
Sbjct: 2   NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  C+KGF+LDGFPRTV QA+ LD +L   G K+D VLN  ++   L 
Sbjct: 62  EVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R+TGRWI    G +YHT F PP V G  D  G  L QR DD  + +K+RL+   KQT+P
Sbjct: 122 KRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KGVL  +  ++  K+V V++  +L  
Sbjct: 182 LLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/211 (48%), Positives = 141/211 (66%), Gaps = 10/211 (4%)
Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           LV +GPPG+GKGTQ+  +  E    H++TGD+LR AV   TPLG KAKE M++GELV DD
Sbjct: 3   LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
           L++ +I++   K       I DGFPRTV QAE LDEMLEK+G K+D VL F + D ++ E
Sbjct: 63  LIIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE 119
Query: 154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV 213
           R++GR I+P +G  YH K+ PP         G  +IQR+DD  +V+K RLE + +QT P+
Sbjct: 120 RLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPL 172
Query: 214 IDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           I+YY KKG+L  + A KP +EV  +V +V+ 
Sbjct: 173 IEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 135/199 (67%), Gaps = 7/199 (3%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           RL+L+G PG+GKGTQ+  IK+++ +  ++TGD LR+AV A TPLG++AK   D+G+LV D
Sbjct: 10  RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            L++G++ + +K+  C  G++ DGFPRT+ QA+   E     G  ID VL   +  S + 
Sbjct: 70  SLIIGLVKERLKEADCANGYLFDGFPRTIAQADAXKEA----GVAIDYVLEIDVPFSEII 125
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER +GR  HPASGR+YH KF PPKV G DDVTGEPL+QR DD  + +K RL+ +  QT+P
Sbjct: 126 ERXSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKP 185
Query: 213 VIDYY---AKKGVLAQLHA 228
           +I YY   A++G    L A
Sbjct: 186 LITYYGDWARRGAENGLKA 204

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 143/217 (65%), Gaps = 9/217 (4%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G PG+GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177
Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
           +I YY+K+        A++   KP  EV  +++K+L 
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 142/217 (65%), Gaps = 9/217 (4%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G PG+GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DD TGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAP 177
Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
           +I YY+K+        A++   KP  EV  +++K+L 
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 145/213 (68%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLEG 214

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 145/213 (68%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/212 (46%), Positives = 145/212 (68%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           ++D+Y++KG LA ++ ++  ++V  +V+ +L 
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLG 213

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 145/213 (68%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQQDIQDVYADVKDLLGG 214

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 142/217 (65%), Gaps = 9/217 (4%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G P +GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177
Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
           +I YY+K+        A++   KP  EV  +++K+L 
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 144/213 (67%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG L  ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLVNVNGQRDIQDVYADVKDLLGG 214

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score =  193 bits (490), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 144/213 (67%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQ +P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 144/213 (67%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGT    I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT+P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KG LA ++ ++  ++V  +V+ +L  
Sbjct: 182 LLDFYSEKGYLANVNGQRDIQDVYADVKDLLGG 214

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  191 bits (484), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 141/217 (64%), Gaps = 9/217 (4%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G   +GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177
Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
           +I YY+K+        A++   KP  EV  +++K+L 
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score =  189 bits (481), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 137/212 (64%)
Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           LVL+G PG+GKGTQ+  I   Y + H++TGDM R+A+   TPLG++AK+ MD+G+LV D+
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62
Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
           + +GI+ + + K  C+ GF+LDGFPRTV QAE L+ ML   G K+D V++  +   +L E
Sbjct: 63  VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLME 122
Query: 154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV 213
           R+TGR I    G +YH  F PP   G  D  G  L QR DD    + +RLE   KQ +P+
Sbjct: 123 RLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPL 182
Query: 214 IDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           +D+Y +KG L  ++ E+  ++V  +++++L  
Sbjct: 183 VDFYEQKGYLRNINGEQDMEKVFADIRELLGG 214

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 142/213 (66%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y +KG L  ++ ++  ++V  +++ +L  
Sbjct: 182 LLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 132/213 (61%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +VL+G PG+GKGTQ+  I ++Y   H++TGDM R+A+   T LG+KAK  MD+G LV D
Sbjct: 2   NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  C+ GF+LDGFPRTV QAE LD++L   G KI+ VLN  ++   L 
Sbjct: 62  EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELI 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            R+TGR I    G SYH  F PP+V G  D  G  L QR DD    + +RLE    QT P
Sbjct: 122 ARLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++ +Y  K VL  ++ +K  K+V  ++  +L  
Sbjct: 182 LLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG 214

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score =  183 bits (465), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 140/213 (65%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +VL+G PG+GKGTQ+  I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D   L 
Sbjct: 62  EVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELM 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAP 181
Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++ +Y  K VL  ++ ++  ++V  +V+ +L  
Sbjct: 182 LLAFYDSKEVLVNVNGQQDIQDVFADVKVILGG 214

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 128/191 (67%), Gaps = 6/191 (3%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R  ++G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D+G+L+ D
Sbjct: 8   RAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D++  ++   +K    +  ++LDGFPRT+ QAE LD     +  +ID V+N  +   +++
Sbjct: 68  DVMTRLVLHELKN-LTQYNWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIK 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R+T RWIHP SGR Y+ +F PPK  G DD+TGEPL+QR+DD  + +  RL+A+  QTEP
Sbjct: 122 QRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEP 181
Query: 213 VIDYYAKKGVL 223
           V++YY KKGVL
Sbjct: 182 VLEYYRKKGVL 192

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R V++G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D+G+L+ D
Sbjct: 9   RAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPD 68
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D++  +    +K    +  ++LDGFPRT+ QAE LD     +  +ID V+N  +   +++
Sbjct: 69  DVMTRLALHELKN-LTQYSWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIK 122
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R+T RWIHPASGR Y+ +F PPK  G DD+TGEPLIQR+DD  + +  RL+A+  QT+P
Sbjct: 123 QRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKP 182
Query: 213 VIDYYAKKGVL 223
           V++YY KKGVL
Sbjct: 183 VLEYYQKKGVL 193

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 130/213 (61%), Gaps = 7/213 (3%)
Query: 14  VDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAK 73
           VD+ TE L  F+  +    R V++GPPGSGKGT    I   + L HL++G  LR  + A 
Sbjct: 11  VDLGTENLY-FQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS 69
Query: 74  TPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEK 133
           T +G  AK+ ++K  LV D ++  ++   ++    +  ++LDGFPRT+ QAE LD++ E 
Sbjct: 70  TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE- 127
Query: 134 QGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKD 193
               +D V++  I    L++R++ RWIHP SGR Y+  F PP VHG DDVTGEPL+Q++D
Sbjct: 128 ----VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183
Query: 194 DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQL 226
           D  + + +RL  +    +PVI+ Y  +GVL Q 
Sbjct: 184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQF 216

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 120/194 (61%), Gaps = 6/194 (3%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R V++GPPGSGKGT    I   + L HL++G  LR  + A T +G  AK+ ++K  LV D
Sbjct: 7   RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD 66
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            ++  ++   ++    +  ++LDGFPRT+ QAE LD++ E     +D V++  I    L+
Sbjct: 67  HVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE-----VDLVISLNIPFETLK 120
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R++ RWIHP SGR Y+  F PP VHG DDVTGEPL+Q++DD  + + +R   +    +P
Sbjct: 121 DRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKP 180
Query: 213 VIDYYAKKGVLAQL 226
           VI+ Y  +GVL Q 
Sbjct: 181 VIELYKSRGVLHQF 194

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 131/214 (61%), Gaps = 11/214 (5%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           ++++ G P SGKGTQ  +IK +Y L H++ GD+LR+ +AA +  G +AKE M+KG+LV D
Sbjct: 7   KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 66
Query: 93  DLVVGIIDQAMKKPSC-EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           ++VV ++ + +++P   E G++LDG+PR+  QA  L E LE    + D  +   + D +L
Sbjct: 67  EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMAL-ETLE---IRPDTFILLDVPDELL 122
Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
            ER+ GR + P +G+ YH K++PP+    ++     L QR DDT + +K RLE +++  E
Sbjct: 123 VERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLETYYQNIE 178
Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            ++  Y  + ++ ++  +     V  ++ ++L S
Sbjct: 179 SLLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 210

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 31/185 (16%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV  
Sbjct: 2   RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           DL   ++D  +  P    GFILDG+PR+V QA+ L EMLE++GT ID VL F + + +L 
Sbjct: 62  DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 121
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+ GR                                R DDT  V+ +R++ +  +T P
Sbjct: 122 ERLKGRG-------------------------------RADDTDDVILNRMKVYRDETAP 150
Query: 213 VIDYY 217
           +++YY
Sbjct: 151 LLEYY 155

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 31/185 (16%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV  
Sbjct: 22  RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           DL   ++D  +  P    GFILDG+PR+V QA+ L EMLE++GT ID VL F + + +L 
Sbjct: 82  DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 141
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+ GR                                R DDT  V+ +R++ +  +T P
Sbjct: 142 ERLKGRG-------------------------------RADDTDDVILNRMKVYRDETAP 170
Query: 213 VIDYY 217
           +++YY
Sbjct: 171 LLEYY 175

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 32/211 (15%)
Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           ++ +GPPG+GKGTQ+  +  E     L+TGD+LR  VA  TPLG + +  M++G+LV DD
Sbjct: 7   VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
           L++ +I + + +       I DGFPRT+ QAE LD +L + GT++  V+   + +  L  
Sbjct: 67  LILELIREELAER-----VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVR 121
Query: 154 RITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV 213
           RI  R                             L  R DD  + ++ RLE + ++TEP+
Sbjct: 122 RILRRA---------------------------ELEGRSDDNEETVRRRLEVYREKTEPL 154
Query: 214 IDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           + YY  +GVL ++     P EV   ++  L 
Sbjct: 155 VGYYEARGVLKRVDGLGTPDEVYARIRAALG 185

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +++ GP GSGKGTQ  ++KD+Y L H+ +G + R  +   T LG KAKE +D+G+LV D
Sbjct: 2   NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D+ + ++ + ++    + G++LDGFPR  VQA+KL E L+++G KI+ V+   +   + +
Sbjct: 62  DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 153 ERITGRWI 160
            RI GR I
Sbjct: 121 NRIMGRRI 128

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%)
Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +++ GP GSGKGTQ  ++KD+Y L H+ +G + R  +   T LG KAKE +D+G+LV D
Sbjct: 2   NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D+ + ++ + ++    + G++LDGFPR  VQA+KL E L+++G KI+ V+   +   + +
Sbjct: 62  DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 153 ERITGRWI 160
            RI GR I
Sbjct: 121 NRIMGRRI 128

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 32/197 (16%)
Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           + ++G PGSGKGTQ   I  +Y   HL+TGD+LRS V++ +  G K  E M+KG+LV  +
Sbjct: 12  IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE 71
Query: 94  LVVGIIDQAM-KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            V+ ++  AM  K +  KGF++DG+PR V Q E+ +  + +        L   +D     
Sbjct: 72  TVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQ------PTLLLYVDAG--P 123
Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           E +T R +                     + +G     R DD  + +K RLE ++K TEP
Sbjct: 124 ETMTQRLLKRG------------------ETSG-----RVDDNEETIKKRLETYYKATEP 160
Query: 213 VIDYYAKKGVLAQLHAE 229
           VI +Y K+G++ +++AE
Sbjct: 161 VIAFYEKRGIVRKVNAE 177

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 32/212 (15%)
Query: 29  KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE 88
           K  K + ++G PGSGKGTQ   I  +Y   HL+TGD+LR+ V++ +  G    E M+KG+
Sbjct: 7   KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 66
Query: 89  LVSDDLVVGIIDQAM-KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID 147
           LV  + V+ ++  AM  K    KGF++DG+PR V Q E+ +  + +        L   +D
Sbjct: 67  LVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQP------TLLLYVD 120
Query: 148 DSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFH 207
                E +T R +                     + +G     R DD  + +K RLE ++
Sbjct: 121 AG--PETMTKRLLKRG------------------ETSG-----RVDDNEETIKKRLETYY 155
Query: 208 KQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV 239
           K TEPVI +Y K+G++ +++AE    +V  +V
Sbjct: 156 KATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 114/216 (52%), Gaps = 34/216 (15%)
Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K + +IG PGSGKGTQ   + ++Y   HL+TG++LR  +A+++      ++ M++G+LV 
Sbjct: 13  KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVP 72
Query: 92  DDLVVGIIDQAMKKPSCE-KGFILDGFPRTVVQAEKLDEMLEKQGTKI-DKVLNFAIDDS 149
             +V+ ++ +AM     + +GF++DG+PR V Q E+        G +I D  L   +D S
Sbjct: 73  SGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEF-------GRRIGDPQLVICMDCS 125
Query: 150 ILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQ 209
              + +T R +         ++ + P                 DDT + +  RLEA+++ 
Sbjct: 126 --ADTMTNRLLQ-------MSRSSLP----------------VDDTTKTIAKRLEAYYRA 160
Query: 210 TEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           + PVI YY  K  L +++AE  P++V +++   + S
Sbjct: 161 SIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 36/200 (18%)
Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K + ++G PGSGKGTQ   +  ++   HL++GD+LR+ V + +P G + K  M++GELV 
Sbjct: 30  KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP 89
Query: 92  DDLVVGIIDQAMKK---PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDD 148
            ++V+ ++ +AM K    +C   F++DG+PR + Q  K     EK+      V+NF + +
Sbjct: 90  LEVVLALLKEAMIKLVDKNCH--FLIDGYPRELDQGIK----FEKEVCPCLCVINFDVSE 143
Query: 149 SILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHK 208
            ++ +R+  R                                R DD  + +  R   F++
Sbjct: 144 EVMRKRLLKRA---------------------------ETSNRVDDNEETIVKRFRTFNE 176
Query: 209 QTEPVIDYYAKKGVLAQLHA 228
            T+PVI++Y ++  +  + A
Sbjct: 177 LTKPVIEHYKQQNKVITIDA 196

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 34/213 (15%)
Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA-AKTPLGIKAKEAMDKGELVSD 92
           + ++G PG+GKGTQ   +  +Y   HL+ GD+LR+    A +  G   K  + +G++V  
Sbjct: 18  IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 77
Query: 93  DLVVGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI 150
           ++ + ++  A+     + +  F++DGFPR + QA       E+   +   +L F   + I
Sbjct: 78  EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAIS----FERDIVESKFILFFDCPEDI 133
Query: 151 LEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQT 210
           + ER+  R     SGRS                         DD  + +K R   F + +
Sbjct: 134 MLERLLERG--KTSGRS-------------------------DDNIESIKKRFNTFKETS 166
Query: 211 EPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
            PVI+Y+  K  + ++  ++  ++V  +VQ  +
Sbjct: 167 MPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 28  SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG 87
           SKP+   VL G PGSGKGTQ   I  ++   HL+ GD+LR    + +  G      +  G
Sbjct: 4   SKPNVVFVL-GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNG 62
Query: 88  ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID 147
           E+V   + V ++  A+   +  K F++DGFPR        +E + K       VL F   
Sbjct: 63  EIVPSIVTVKLLKNAI-DANQGKNFLVDGFPRNEENNNSWEENM-KDFVDTKFVLFFDCP 120
Query: 148 DSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFH 207
           + ++ +R+  R    +SGRS                         DD  + +K R   F+
Sbjct: 121 EEVMTQRLLKR--GESSGRS-------------------------DDNIESIKKRFNTFN 153
Query: 208 KQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            QT+ VID+Y K   +  + A +   EV  +V+ +  S
Sbjct: 154 VQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 37/217 (17%)
Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTP---LGIKAKEAMDKGELV 90
           + ++G PG+GKGTQ   I ++Y   HL+ G++LR     K P    G   ++ + +G++V
Sbjct: 6   VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRD--ERKNPDSQYGELIEKYIKEGKIV 63
Query: 91  SDDLVVGII----DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
             ++ + ++    DQ M   + +  F++DGFPR     +  ++ ++ +   +  VL F  
Sbjct: 64  PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKAD-VSFVLFFDC 122
Query: 147 DDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAF 206
           ++ I  ER   R    +SGRS                         DD  + L+ R++ +
Sbjct: 123 NNEICIERCLER--GKSSGRS-------------------------DDNRESLEKRIQTY 155
Query: 207 HKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
            + T+P+ID Y + G + ++ A K   EV  EV ++ 
Sbjct: 156 LQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	1e-138
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	1e-128
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	1e-127
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	1e-126
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	1e-126
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	1e-126
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	1e-121
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	1e-121
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	1e-119
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	1e-117
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	1e-113
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	1e-112
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	1e-110
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	3e-88
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	2e-84
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	2e-77
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	7e-76
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	1e-74
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	3e-71
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	2e-70
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	3e-29
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	5e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	4e-06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	4e-05
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	9e-05
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	1e-04
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	2e-04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	5e-04

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  386 bits (993), Expect = e-138
 Identities = 116/236 (49%), Positives = 160/236 (67%)

Query: 8   LEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLR 67
           LE+  ++D++ EL RR+ C SKPD R + +G PGSGKGTQS  +K  +C CHL+TGD+LR
Sbjct: 6   LENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLR 65

Query: 68  SAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKL 127
            A   KT LG+K K  +++G+LV D +V+ ++D+ +K P C+KGFILDG+PR V QAE L
Sbjct: 66  EAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDL 125

Query: 128 DEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP 187
           +++L+K  TK+D V  F + D +L  RI+GR IH  SGR YH  F PPKV   DDVT EP
Sbjct: 126 NKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEP 185

Query: 188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           LIQR+DD   VLK RL  F  +T P+I YY  K +L  L A +P  ++  ++ + +
Sbjct: 186 LIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHI 241

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  359 bits (924), Expect = e-128
 Identities = 110/217 (50%), Positives = 151/217 (69%), Gaps = 1/217 (0%)

Query: 27  SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK 86
           +SK    L+LIG PGSGKGTQ   IK EY L HL+TGDMLR A+   T +G++AK  ++ 
Sbjct: 2   NSKK-HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES 60

Query: 87  GELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
           G  V D++V+G++ +      C  GF+LDGFPRT+ QAE L ++L + G  +  V+ F I
Sbjct: 61  GNFVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEI 120

Query: 147 DDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAF 206
           DDS + ERI+GR  HPASGR YH K+ PPK  G DDVTGEPL+ R DD A+ +K RL+ F
Sbjct: 121 DDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVF 180

Query: 207 HKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           HKQT P++ +Y   G+L +++A+ PPKEVT +++K+L
Sbjct: 181 HKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  357 bits (919), Expect = e-127
 Identities = 114/219 (52%), Positives = 157/219 (71%)

Query: 27  SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK 86
            S    R VL+GPPG+GKGTQ+P +   +C+CHLATGDMLR+ VA+ + LG K K  MD 
Sbjct: 12  ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA 71

Query: 87  GELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
           G+LVSD++V+ +I++ ++ P C+ GF+LDGFPRTV QAE LD+++EK+  K+D V+ F+I
Sbjct: 72  GKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI 131

Query: 147 DDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAF 206
            DS+L  RITGR IHP SGRSYH +F PPK    DD+TGEPLI+R DD  + LK RLEA+
Sbjct: 132 PDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAY 191

Query: 207 HKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           H QT P+++YY+K+G+ + + A + P  V   +    S 
Sbjct: 192 HTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  355 bits (914), Expect = e-126
 Identities = 119/213 (55%), Positives = 156/213 (73%), Gaps = 1/213 (0%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+G LVSD
Sbjct: 6   RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65

Query: 93  DLVVGII-DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V +I D+    P+C+ GFILDGFPRT+ QAEKLD+ML++QGT ++K +   +DD +L
Sbjct: 66  DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RITGR IHPASGRSYH  F PPK    DDVTGE L+QR DD A  LK RL A+H QTE
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTE 185

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           P++D+Y K G+ A + A +PP  V  ++   L 
Sbjct: 186 PIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  355 bits (913), Expect = e-126
 Identities = 97/213 (45%), Positives = 143/213 (67%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +VL+G PG+GKGTQ+  I ++Y + H++TGDM R+A+   T LG+KAK  MD+G LV D
Sbjct: 2   NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  C+KGF+LDGFPRTV QA+ LD +L   G K+D VLN  ++   L 
Sbjct: 62  EVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R+TGRWI    G +YHT F PP V G  D  G  L QR DD  + +K+RL+   KQT+P
Sbjct: 122 KRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y++KGVL  +  ++  K+V V++  +L  
Sbjct: 182 LLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  354 bits (911), Expect = e-126
 Identities = 97/213 (45%), Positives = 142/213 (66%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ   I ++Y + H++TGDM R+A+  +TPLG++AK  +DKGELV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  CE+GF+LDGFPRTV QAE L+E+LE+ G  ID V+N  +D  +L 
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+TGR I    G +YH  F PPK  G  D  G  L QR DD  + +  RLE   KQT P
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAP 181

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y +KG L  ++ ++  ++V  +++ +L  
Sbjct: 182 LLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  343 bits (882), Expect = e-121
 Identities = 94/216 (43%), Positives = 142/216 (65%), Gaps = 9/216 (4%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G P +GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI GR +H  SGR YH KF PPKV G DDVTGE L  RKDD  + ++ RL  +H+ T P
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAP 177

Query: 213 VIDYYAKKG-----VLAQLHAEKPPKEVTVEVQKVL 243
           +I YY+K+        A++   KP  EV  +++K+L
Sbjct: 178 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  343 bits (882), Expect = e-121
 Identities = 89/233 (38%), Positives = 137/233 (58%), Gaps = 8/233 (3%)

Query: 13  SVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA 72
            VD+ TE L     +SK   R V++GPPGSGKGT    I   + L HL++G  LR  + A
Sbjct: 10  GVDLGTENLYFQSMASKL-LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA 68

Query: 73  KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLE 132
            T +G  AK+ ++K  LV D ++  ++   ++     + ++LDGFPRT+ QAE LD++  
Sbjct: 69  STEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG-QHWLLDGFPRTLGQAEALDKIC- 126

Query: 133 KQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRK 192
               ++D V++  I    L++R++ RWIHP SGR Y+  F PP VHG DDVTGEPL+Q++
Sbjct: 127 ----EVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE 182

Query: 193 DDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           DD  + + +RL  +    +PVI+ Y  +GVL Q    +   ++   V  + S+
Sbjct: 183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETN-KIWPYVYTLFSN 234

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  339 bits (872), Expect = e-119
 Identities = 99/224 (44%), Positives = 142/224 (63%), Gaps = 15/224 (6%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           RL+L+G PG+GKGTQ+  IK+++ +  ++TGDMLR+AV A TPLG++AK  MD+G+LV D
Sbjct: 10  RLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPD 69

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            L++G++ + +K+  C  G++ DGFPRT+ QA+ + E     G  ID VL   +  S + 
Sbjct: 70  SLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKEA----GVAIDYVLEIDVPFSEII 125

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER++GR  HPASGR+YH KF PPKV G DDVTGEPL+QR DD  + +K RL+ +  QT+P
Sbjct: 126 ERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKP 185

Query: 213 VIDYYAKKGVLAQLHAEKPPK-----------EVTVEVQKVLSS 245
           +I YY         +  K P            E+   V++   S
Sbjct: 186 LITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  333 bits (855), Expect = e-117
 Identities = 91/220 (41%), Positives = 136/220 (61%), Gaps = 7/220 (3%)

Query: 26  CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD 85
            +S    R V++G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D
Sbjct: 2   GASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID 61

Query: 86  KGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFA 145
           +G+L+ DD++  +    +K    +  ++LDGFPRT+ QAE LD        +ID V+N  
Sbjct: 62  QGKLIPDDVMTRLALHELKNL-TQYSWLLDGFPRTLPQAEALDRAY-----QIDTVINLN 115

Query: 146 IDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEA 205
           +   ++++R+T RWIHPASGR Y+ +F PPK  G DD+TGEPLIQR+DD  + +  RL+A
Sbjct: 116 VPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKA 175

Query: 206 FHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           +  QT+PV++YY KKGVL      +   ++   V   L +
Sbjct: 176 YEDQTKPVLEYYQKKGVLETFSGTE-TNKIWPYVYAFLQT 214

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  321 bits (826), Expect = e-113
 Identities = 103/211 (48%), Positives = 141/211 (66%), Gaps = 10/211 (4%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LV +GPPG+GKGTQ+  +  E    H++TGD+LR AV   TPLG KAKE M++GELV D
Sbjct: 2   ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           DL++ +I++   K       I DGFPRTV QAE LDEMLEK+G K+D VL F + D ++ 
Sbjct: 62  DLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVI 118

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER++GR I+P +G  YH K+ PP         G  +IQR+DD  +V+K RLE + +QT P
Sbjct: 119 ERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAP 171

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           +I+YY KKG+L  + A KP +EV  +V +V+
Sbjct: 172 LIEYYKKKGILRIIDASKPVEEVYRQVLEVI 202

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  319 bits (821), Expect = e-112
 Identities = 71/214 (33%), Positives = 130/214 (60%), Gaps = 11/214 (5%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           ++++ G P SGKGTQ  +IK +Y L H++ GD+LR+ +AA +  G +AKE M+KG+LV D
Sbjct: 7   KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 66

Query: 93  DLVVGIIDQAMKKPSC-EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           ++VV ++ + +++P   E G++LDG+PR+  QA  L+ +      + D  +   + D +L
Sbjct: 67  EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL----EIRPDTFILLDVPDELL 122

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
            ER+ GR + P +G+ YH K++PP+    ++     L QR DDT + +K RLE +++  E
Sbjct: 123 VERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLETYYQNIE 178

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            ++  Y  + ++ ++  +     V  ++ ++L S
Sbjct: 179 SLLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 210

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  316 bits (812), Expect = e-110
 Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 12/223 (5%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +++ GP GSGKGTQ  ++KD+Y L H+ +G + R  +   T LG KAKE +D+G+LV D
Sbjct: 2   NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D+ + ++ + + +   + G++LDGFPR  VQA+KL E L+++G KI+ V+   +   + +
Sbjct: 62  DITIPMVLETL-ESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVH--GFDDVTGEPLIQRKDDTA-QVLKSRLEAFHKQ 209
            RI GR I   +    +  F            V G  L  R DD     +  R + ++  
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNT 180

Query: 210 TEPVI---DYYAKKG-----VLAQLHAEKPPKEVTVEVQKVLS 244
            +  +    YY         V  +L  E     +   +   L+
Sbjct: 181 VDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQLA 223

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  259 bits (663), Expect = 3e-88
 Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 33/212 (15%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV  
Sbjct: 22  RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           DL   ++D  +  P    GFILDG+PR+V QA+ L EMLE++GT ID VL F + + +L 
Sbjct: 82  DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 141

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+ GR                                R DDT  V+ +R++ +  +T P
Sbjct: 142 ERLKGR-------------------------------GRADDTDDVILNRMKVYRDETAP 170

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +++YY  +  L  + A     EV     + L 
Sbjct: 171 LLEYYRDQ--LKTVDAVGTMDEVFARALRALG 200

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  248 bits (636), Expect = 2e-84
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 32/211 (15%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            ++ +GPPG+GKGTQ+  +  E     L+TGD+LR  VA  TPLG + +  M++G+LV D
Sbjct: 6   AVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPD 65

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           DL++ +I + +      +  I DGFPRT+ QAE LD +L + GT++  V+   + +  L 
Sbjct: 66  DLILELIREELA-----ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELV 120

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            RI  R                             L  R DD  + ++ RLE + ++TEP
Sbjct: 121 RRILRR---------------------------AELEGRSDDNEETVRRRLEVYREKTEP 153

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           ++ YY  +GVL ++     P EV   ++  L
Sbjct: 154 LVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  231 bits (591), Expect = 2e-77
 Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 32/215 (14%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
             + ++G PGSGKGTQ   I  +Y   HL+TGD+LRS V++ +  G K  E M+KG+LV 
Sbjct: 10  NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVP 69

Query: 92  DDLVVGIIDQAM-KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI 150
            + V+ ++  AM  K +  KGF++DG+PR V Q E+ +  +     +   +L        
Sbjct: 70  LETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG----QPTLLLYVDAGPET 125

Query: 151 LEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQT 210
           + +R+  R     SGR                          DD  + +K RLE ++K T
Sbjct: 126 MTQRLLKR--GETSGRV-------------------------DDNEETIKKRLETYYKAT 158

Query: 211 EPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           EPVI +Y K+G++ +++AE     V  +V   L +
Sbjct: 159 EPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  227 bits (581), Expect = 7e-76
 Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 32/215 (14%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K + +IG PGSGKGTQ   + ++Y   HL+TG++LR  +A+++      ++ M++G+LV 
Sbjct: 13  KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVP 72

Query: 92  DDLVVGIIDQAM-KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI 150
             +V+ ++ +AM       +GF++DG+PR V Q E+    +         V+        
Sbjct: 73  SGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG----DPQLVICMDCSADT 128

Query: 151 LEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQT 210
           +  R+          RS                         DDT + +  RLEA+++ +
Sbjct: 129 MTNRLLQM------SRSS---------------------LPVDDTTKTIAKRLEAYYRAS 161

Query: 211 EPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            PVI YY  K  L +++AE  P++V +++   + S
Sbjct: 162 IPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  223 bits (572), Expect = 1e-74
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 30/219 (13%)

Query: 27  SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK 86
            SKP   + ++G PGSGKGTQ   I  ++   HL+ GD+LR    + +  G      +  
Sbjct: 3   KSKP-NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN 61

Query: 87  GELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
           GE+V   + V ++  A+      K F++DGFPR        +E + K       VL F  
Sbjct: 62  GEIVPSIVTVKLLKNAIDANQG-KNFLVDGFPRNEENNNSWEENM-KDFVDTKFVLFFDC 119

Query: 147 DDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAF 206
            + ++ +R+  R    +SGRS                         DD  + +K R   F
Sbjct: 120 PEEVMTQRLLKRGE--SSGRS-------------------------DDNIESIKKRFNTF 152

Query: 207 HKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           + QT+ VID+Y K   +  + A +   EV  +V+ +  S
Sbjct: 153 NVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  215 bits (550), Expect = 3e-71
 Identities = 52/217 (23%), Positives = 102/217 (47%), Gaps = 33/217 (15%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA-AKTPLGIKAKEAMDKGELVSD 92
           + ++G PG+GKGTQ   I ++Y   HL+ G++LR       +  G   ++ + +G++V  
Sbjct: 6   VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPV 65

Query: 93  DLVVGIIDQAMKKP----SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDD 148
           ++ + ++ + M +     + +  F++DGFPR     +  ++ ++     +  VL F  ++
Sbjct: 66  EITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDG-KADVSFVLFFDCNN 124

Query: 149 SILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHK 208
            I  ER   R    +SGRS                         DD  + L+ R++ + +
Sbjct: 125 EICIERCLERGK--SSGRS-------------------------DDNRESLEKRIQTYLQ 157

Query: 209 QTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            T+P+ID Y + G + ++ A K   EV  EV ++   
Sbjct: 158 STKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  213 bits (545), Expect = 2e-70
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 34/217 (15%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA-AKTPLGIKAKEAMDKGELV 90
             + ++G PG+GKGTQ   +  +Y   HL+ GD+LR+    A +  G   K  + +G++V
Sbjct: 16  SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV 75

Query: 91  SDDLVVGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDD 148
             ++ + ++  A+     + +  F++DGFPR + QA   +  +     +   +L F   +
Sbjct: 76  PQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI----VESKFILFFDCPE 131

Query: 149 SILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHK 208
            I+ ER+  R     SGRS                         DD  + +K R   F +
Sbjct: 132 DIMLERLLERGK--TSGRS-------------------------DDNIESIKKRFNTFKE 164

Query: 209 QTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            + PVI+Y+  K  + ++  ++  ++V  +VQ  +  
Sbjct: 165 TSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score =  107 bits (269), Expect = 3e-29
 Identities = 25/195 (12%), Positives = 53/195 (27%), Gaps = 20/195 (10%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K  ++ GP G GK T    +  +        GD++   V        ++ E +    L  
Sbjct: 3   KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA---LTW 59

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
            +    I D  +     +   +LD              +  K      + +    +   L
Sbjct: 60  KN----ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREEL 115

Query: 152 EERITGRWIHPASGRSYHTKF-----APPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEA- 205
             R   R      G                   F + +      +  +   ++K+     
Sbjct: 116 LRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSH----LQPTNLNDIVKNLKTNP 171

Query: 206 ---FHKQTEPVIDYY 217
              F    +P+  ++
Sbjct: 172 RFIFCMAGDPLEHHH 186

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 67.2 bits (164), Expect = 5e-14
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELV 90
           K +++ G PGSGK   + ++K E     +   D++R   + +   G +  +   +  E+ 
Sbjct: 2   KVILITGMPGSGKSEFAKLLK-ERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIY 60

Query: 91  SDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI 150
            D +V  +  + +   + +   + DG  R++ +     E  ++       ++       I
Sbjct: 61  GDGVVARLCVEELGTSNHDL-VVFDGV-RSLAEV----EEFKRLLGDSVYIVAVHSPPKI 114

Query: 151 LEERITGR 158
             +R+  R
Sbjct: 115 RYKRMIER 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 54/346 (15%), Positives = 94/346 (27%), Gaps = 130/346 (37%)

Query: 10  DVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGT------QSPVIKDE--------- 54
           +V  +    +L R+     +P K +++ G  GSGK         S  ++ +         
Sbjct: 130 NVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 55  --YC------------LCHLATGDML-RSAVAAKTPLGIK-AKEAMD---------KGEL 89
              C            L +    +   RS  ++   L I   +  +             L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 90  VSDDLV--VGIIDQAMKKPSC-------EKG--FILDGFPRTVVQAEKLDEMLEKQGTK- 137
           V  + V      + A    SC        K     L     T +  +     L     K 
Sbjct: 249 VLLN-VQNAKAWN-AF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 138 -IDKVLNFAIDD-------------SILEERI---TGRW--------------------- 159
            + K L+    D             SI+ E I      W                     
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 160 IHPASGRSYHTKFA--------PPKVHG---FDDVTGEP-----------LIQR--KDDT 195
           + PA  R    + +        P  +     FD +  +            L+++  K+ T
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 196 AQV------LKSRLE---AFHKQTEPVIDYYAKKGVLAQLHAEKPP 232
             +      LK +LE   A H+    ++D+Y             P 
Sbjct: 426 ISIPSIYLELKVKLENEYALHRS---IVDHYNIPKTFDSDDLIPPY 468

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 21/127 (16%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
             ++L G PG GK T    +  +  L ++  GD     +A +  L     E  D   L  
Sbjct: 12  PNILLTGTPGVGKTTLGKELASKSGLKYINVGD-----LAREEQLYDGYDEEYDCPILDE 66

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D +V       +     E G I+D                         V     D ++L
Sbjct: 67  DRVV-----DELDNQMREGGVIVDYHGCDFFPER-----------WFHIVFVLRTDTNVL 110

Query: 152 EERITGR 158
            ER+  R
Sbjct: 111 YERLETR 117

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 7/166 (4%)

Query: 15  DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA-TGDMLRSAVAAK 73
           D + EL++  K    P    +L G PGSGK +    I +E     +    D  +      
Sbjct: 18  DNLEELIQGKKAVESP-TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNF 76

Query: 74  TPLGIKA-KEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLE 132
             L     K+ +      S+ +   II +   +       +++G  RT     +   ML+
Sbjct: 77  DELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ---GYNLVIEGTGRTTDVPIQTATMLQ 133

Query: 133 KQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVH 178
            +G +   +   A+           R+    +      +  P + H
Sbjct: 134 AKGYETK-MYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAH 178

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 18/127 (14%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDE-YCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
            +++ G PG+GK + + +I  E     HL  G      +  +     +    +D   +  
Sbjct: 12  NILITGTPGTGKTSMAEMIAAELDGFQHLEVGK-----LVKENHFYTEYDTELDTHIIEE 66

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
            D    ++D            ++D     +                   V+       +L
Sbjct: 67  KDEDR-LLDFMEPIMVSRGNHVVDYHSSELFPER-----------WFHMVVVLHTSTEVL 114

Query: 152 EERITGR 158
            ER+T R
Sbjct: 115 FERLTKR 121

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 16/165 (9%)

Query: 32  KRLV-LIGPPGSGKGTQSPVIKDEYCLCHLAT----GDMLRSAVAAKTPLGIKAKEAMDK 86
           K+++  IG PGSGK T     + E+   +        D  R ++ A         +   K
Sbjct: 2   KKIILTIGCPGSGKST---WAR-EFIAKNPGFYNINRDDYRQSIMAHEERD--EYKYTKK 55

Query: 87  GELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
            E +   +        +      KG I+        +    +   ++ G K+ +   F +
Sbjct: 56  KEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKV-EHKVFDV 114

Query: 147 DDSILEERITGRWIHPASG---RSYHTKF-APPKVHGFDDVTGEP 187
             + L +R + R          RS +        +  ++   G+P
Sbjct: 115 PWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKP 159

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 15  DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA-TGDMLRSAVAAK 73
             +  L R  K S +P   ++L G  G+GK T   + + E+    +   GD  RS     
Sbjct: 17  RNLRSLTRGKKSSKQP-IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHY 75

Query: 74  TPLGIK-AKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLE 132
             L  +  K++++  +  +  +V  ++ +           +++G  RTV   +K  ++L+
Sbjct: 76  LELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL---GYNLLIEGTLRTVDVPKKTAQLLK 132

Query: 133 KQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVH 178
            +G ++ ++   A    +       R+           +  P + H
Sbjct: 133 NKGYEV-QLALIATKPELSYLSTLIRYEELYIINPNQARATPKEHH 177

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
           +++ G P +GK T S  +     L  L+  D  +  +          +E   +    +  
Sbjct: 8   IIVTGHPATGKTTLSQALATGLRLPLLSK-DAFKEVMFDGLGWSD--REWSRRVGATAIM 64

Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
           ++       ++     +  I++   R  +  E++  +           +       +L E
Sbjct: 65  MLYHTAATILQ---SGQSLIMESNFRVDLDTERMQNLHTIAPFT-PIQIRCVASGDVLVE 120

Query: 154 RITGRW 159
           RI  R 
Sbjct: 121 RILSRI 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	100.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	100.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	100.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	100.0
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	100.0
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	100.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	100.0
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	100.0
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	100.0
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	100.0
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.96
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.95
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.95
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.94
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.94
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.94
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.94
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.83
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.75
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.75
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.75
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.73
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.73
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.72
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.71
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.71
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.69
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.69
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.67
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.67
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.67
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.67
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.66
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.66
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.66
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.65
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.65
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.65
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.65
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.64
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.64
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.63
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.63
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.62
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.62
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.62
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.62
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.62
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.62
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.6
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.6
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.59
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.59
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.59
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.58
1via_A	175	Shikimate kinase; structural genomics, transferase	99.57
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.57
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.57
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.56
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.56
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.56
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.55
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.53
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.52
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.52
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.48
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.48
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.45
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.44
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.43
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.43
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.43
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.41
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.41
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.39
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.39
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.37
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.35
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.34
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.32
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.31
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.26
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.25
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.21
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.21
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.12
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.1
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.07
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.03
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.02
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.98
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.97
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.96
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.88
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.85
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.84
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.84
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.83
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.81
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.76
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.71
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.67
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.67
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.65
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.61
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.47
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.46
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.44
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.42
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.38
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.37
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.29
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.25
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.2
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.18
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.17
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.15
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.1
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.05
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.02
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.99
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.98
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.97
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.96
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	97.95
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.92
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.87
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.86
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.82
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.8
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.79
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.74
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.73
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.73
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.73
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.71
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.7
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.68
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.63
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.61
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.61
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.61
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.6
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.59
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.59
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.58
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.58
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.55
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.55
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.54
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.54
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.52
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.52
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.52
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.5
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.49
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.49
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.48
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.47
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.47
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.42
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.41
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.41
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.39
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.39
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.39
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.38
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.37
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.35
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.35
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.35
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.34
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.33
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.32
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.3
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.3
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.3
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.23
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.23
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.21
3co5_A	143	Putative two-component system transcriptional RES	97.2
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.19
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.19
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.18
3bos_A	242	Putative DNA replication factor; P-loop containing	97.17
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.16
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.16
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.15
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.15
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.15
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.13
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.11
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.11
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.09
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.07
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.06
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.06
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.05
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.04
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.03
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.02
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.02
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.01
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.01
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.01
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.01
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.0
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.0
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.99
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.97
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.97
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.97
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.97
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.95
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.94
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.94
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.92
3pvs_A	447	Replication-associated recombination protein A; ma	96.92
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.91
2og2_A	359	Putative signal recognition particle receptor; nuc	96.88
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.87
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.86
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.85
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.85
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.85
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.84
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.83
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.83
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.83
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.82
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.82
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.82
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.82
1g6h_A	257	High-affinity branched-chain amino acid transport	96.81
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.81
2qgz_A	308	Helicase loader, putative primosome component; str	96.81
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.8
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.79
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.79
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.79
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.79
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.79
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.78
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.78
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.77
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.77
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.77
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.77
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.76
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.76
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.76
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.76
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.75
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.74
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.73
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.72
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.71
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.71
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.71
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.71
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.71
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.69
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.69
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.68
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.68
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.67
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.67
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.67
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.66
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.66
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.64
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.64
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.63
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.63
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.62
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.62
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.61
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.6
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.6
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.6
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.6
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.6
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.59
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.58
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.57
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.55
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.54
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.54
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.53
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.53
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.52
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.52
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.52
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.52
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.51
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.51
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.51
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.51
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.51
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.51
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.51
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.51
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.5
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.5
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.49
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.49
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.49
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.49
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.47
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.46
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.46
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.46
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.46
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.46
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.45
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.44
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.44
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.44
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.44
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.43
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	96.43
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.43
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.43
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.43
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.43
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.42
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.42
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.42
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.41
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.4
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.39
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.38
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.38
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.38
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.38
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.37
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.35
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.34
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.34
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.33
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.33
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.33
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.33
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.32
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.31
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.31
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.3
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.3
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.29
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.28
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.27
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.27
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.27
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.27
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.25
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.24
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.24
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.24
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.24
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.23
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.23
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.22
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.21
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.21
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.21
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.21
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.21
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.18
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.18
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.18
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.17
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.17
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.16
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.16
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.16
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.15
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.15
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.15
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.15
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.15
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.14
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.13
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.13
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.12
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.11
2xxa_A	433	Signal recognition particle protein; protein trans	96.09
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.09
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.08
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.08
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.08
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.07
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.07
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.07
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.07
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.06
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.04
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.04
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.03
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.03
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.03
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.02
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.02
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.02
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.0
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.98
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.98
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.98
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.98
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.97
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.97
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.96
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.96
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.96
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.95
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.95
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.93
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.91
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.87
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.85
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.84
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.83
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.83
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.82
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.82
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.81
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.8
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.8
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.79
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.78
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.76
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.76
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.74
2fna_A	357	Conserved hypothetical protein; structural genomic	95.74
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.73
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.73
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.71
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.69
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.68
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.68
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.66
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.64
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.63
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.62
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.62
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	95.62
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.6
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.59
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.57
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.57
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.57
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.56
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.56
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.56
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.55
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.53
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.5
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.49
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.49
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	95.49
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.48
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.46
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.46
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.45
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.42
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.41
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.4
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.39
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	95.38
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.37
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.36
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.32
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.31
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.28
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.27
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.26
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.25
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.23
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.19
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.19

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=2.9e-44  Score=287.45  Aligned_cols=204  Identities=50%  Similarity=0.869  Sum_probs=193.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|||||||+|+|+.|+++||++|||+++++|+++..++++|..++.++..|..+|++++..++..++..   .++
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~---~~~   77 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK---HGN   77 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS---SSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc---CCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999998754   358


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      ||+||||++..|+..|...+...+..++.+|+|+||++++++|+..|++|+.||+.||..|+||.       |+.++.+|
T Consensus        78 ~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~-------~g~~l~~r  150 (206)
T 3sr0_A           78 VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQR  150 (206)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCC-------TTCCCBCC
T ss_pred             eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCC-------CCceeccc
Confidence            99999999999999999998888889999999999999999999999999999999999999996       55778899


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                      .+|+.+.+++|++.|++.+.++.+||.+.+.++.|||++++++|++.|.++|.+
T Consensus       151 ~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          151 EDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             GGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999998864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=8.8e-45  Score=292.78  Aligned_cols=212  Identities=45%  Similarity=0.833  Sum_probs=183.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      .-|...|+|+|||||||+|+.|+++||+++|++++++++.+..++++|+.+.+++..|..+|++++..++.+++....+.
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~   86 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA   86 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999887667


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI  189 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~  189 (245)
                      +|||+||||++..|+..|.    ..+..|+.+|+|+||++++++|+.+|++|+.||+.||..|+||..+++|+.|+++|.
T Consensus        87 ~g~ILDGfPRt~~Qa~~L~----~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~  162 (230)
T 3gmt_A           87 NGYLFDGFPRTIAQADAMK----EAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLV  162 (230)
T ss_dssp             TCEEEESCCCSHHHHHHHH----HTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred             CCeEecCCCCcHHHHHHHH----HhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccc
Confidence            8999999999999998765    345788999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc-----------CcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKK-----------GVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~-----------~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                      +|++|+++.+++|++.|++.+.++.+||.+.           +.++.|||++++++|++.|.++|.+
T Consensus       163 ~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~  229 (230)
T 3gmt_A          163 QRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS  229 (230)
T ss_dssp             CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999973           7899999999999999999988754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=100.00  E-value=7e-43  Score=286.95  Aligned_cols=237  Identities=49%  Similarity=0.894  Sum_probs=222.7

Q ss_pred             cCCCChhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC
Q 025970            8 LEDVPSVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG   87 (245)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~   87 (245)
                      ++..+..+++.++++++.....+|++|+|+|+|||||||+|+.|++++|++++++++++++....+++.|..+.+++..|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g   85 (243)
T 3tlx_A            6 LENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEG   85 (243)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTT
T ss_pred             hhhcchHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcC
Confidence            45778999999999999877778999999999999999999999999999999999999999888999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcc
Q 025970           88 ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRS  167 (245)
Q Consensus        88 ~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~  167 (245)
                      ..+++..+..++..++....+.++||+||||++..+...|...+...+..|+.+|+|++|++++.+|+.+|+.|+.||+.
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~  165 (243)
T 3tlx_A           86 KLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRI  165 (243)
T ss_dssp             CCCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEE
T ss_pred             CCCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcc
Confidence            99999999999999888766678999999999999999998888878888999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          168 YHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       168 y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ||..|+||+.++.|+.|++++.+|.+++.+.+++|+..|++.+.++.+||...+.++.||++.+++++++.|.++|.
T Consensus       166 y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          166 YHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             EETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999998899999999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=100.00  E-value=3.1e-39  Score=260.42  Aligned_cols=213  Identities=46%  Similarity=0.814  Sum_probs=202.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|+|||||||+++.|++++|++++++|+++++....+++.+..+.+++..|..+++..+..++...+.......+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999988887666789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      +|+||+|.+..+...+...+...+..|+.+|+|++|++++.+|+..|+.|+.||+.||..|+||+.++.|+.|+.++.+|
T Consensus        81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3dl0_A           81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence            99999999999999888887777788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      .+++.+.+++|+..|++.+.++.+||.+.+.++.||++.+++++++.|.+.|+
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  213 (216)
T 3dl0_A          161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG  213 (216)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999988889999999999999999999876

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=100.00  E-value=1.1e-38  Score=257.09  Aligned_cols=214  Identities=45%  Similarity=0.826  Sum_probs=202.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|+|||||||+++.|++++|++++++|+++++....+++.+..+.+++..|..+++..+..++...+.......+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999988877666789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      +|+||+|.+..+...+...+...+..|+.+|+|++|++++.+|+.+|+.|+.+|+.||..|+||..++.|+.|+.++.+|
T Consensus        81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3fb4_A           81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence            99999999999999888887777788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                      .+++.+.+++|+..|++.+.++.+||.+.+.++.||++.+++++++.|.+.|.+
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999888899999999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.4e-38  Score=254.09  Aligned_cols=215  Identities=50%  Similarity=0.906  Sum_probs=196.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .++++|+|+|+|||||||+++.|++.+|++++++|+++++....+++.|..+.+++..|..++++....++..++.....
T Consensus         3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~   82 (217)
T 3be4_A            3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC   82 (217)
T ss_dssp             GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence            45689999999999999999999999999999999999998888899999999999999999999998888888877666


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      +.+||+||||++..+...+..++...+..|+.+|+|++|++++.+|+..|..++.+|+.||..|+||+.++.|+.|++++
T Consensus        83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l  162 (217)
T 3be4_A           83 VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPL  162 (217)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccccc
Confidence            78999999999998888877666666678999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                      ..+.++..+.+++|+..|++...++.++|.+.+.++.||++.+++++++.|.+.|
T Consensus       163 ~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          163 VWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence            9999999999999999999999999999987778999999999999999998764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=7.4e-38  Score=251.56  Aligned_cols=187  Identities=29%  Similarity=0.511  Sum_probs=168.1

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP-  106 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~-  106 (245)
                      .+++++|+|+|||||||+|+|+.|+++||+++||+++++|+++..++++|..+..++..|..+|++++..++..++... 
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~  105 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV  105 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence            3568899999999999999999999999999999999999999999999999999999999999999999999988664 


Q ss_pred             CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                      ...+|||+||||++..|+..|...    ...++.+|+|+||++++.+|+..|..                          
T Consensus       106 ~~~~g~ilDGfPRt~~Qa~~l~~~----~~~~~~vi~l~v~~e~~~~Rl~~R~~--------------------------  155 (217)
T 3umf_A          106 DKNCHFLIDGYPRELDQGIKFEKE----VCPCLCVINFDVSEEVMRKRLLKRAE--------------------------  155 (217)
T ss_dssp             TTCSEEEEETBCSSHHHHHHHHHH----TCCCSEEEEEECCHHHHHHHHSCC----------------------------
T ss_pred             ccccCcccccCCCcHHHHHHHHHh----CCccCEEEeccCCHHHHHHHHhcccc--------------------------
Confidence            345799999999999999987754    36789999999999999999999862                          


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                       +.+|.+|+++.+++|++.|++.+.++.+||.+.+.++.|||++++++|++.|.+.|+.
T Consensus       156 -~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          156 -TSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             -cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence             2347788999999999999999999999999999999999999999999999998863

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=100.00  E-value=2.3e-36  Score=246.53  Aligned_cols=216  Identities=52%  Similarity=0.947  Sum_probs=198.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .++++|+|+|+|||||||+++.|++++++.++++++++++....+++.+..+.+++..|..++++.+..++..++.....
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~   93 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   93 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence            45789999999999999999999999999999999999998888899999999999999999999999999888876555


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      +.+||+||||++..+...|.+++...+..|+.+|+|++|++++.+|+..|..|+.+|+.||..|.||..++.++.|++++
T Consensus        94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l  173 (233)
T 1ak2_A           94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL  173 (233)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred             cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccc
Confidence            67899999999998888777776655667899999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ..|.++..+.+++|+..|++...++.++|...+.++.||++.+++++++.|.+.|.
T Consensus       174 ~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~  229 (233)
T 1ak2_A          174 IRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS  229 (233)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999877779999999999999999998774

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=100.00  E-value=4.5e-36  Score=242.66  Aligned_cols=216  Identities=55%  Similarity=0.946  Sum_probs=193.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK-KPS  107 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-~~~  107 (245)
                      +++++|+|+|+|||||||+++.|++.+++.++++|+++++....+++.|..+.+++..|..+++..+..++..++. ...
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999999999999999999888889999999999999999999998888888776 433


Q ss_pred             CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                      .+.+||+||||++..+...|.+++...+..|+++|+|++|++++++|+..|..++.+|+.||..|+||+.+..++..+++
T Consensus        82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~  161 (220)
T 1aky_A           82 CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEA  161 (220)
T ss_dssp             GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred             cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccc
Confidence            45789999999999888888777666677899999999999999999999999999999999999999887544444568


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      +..|.+++.+.+++|+..|++...++.++|.+.+.++.||++.+++++++.|.+.|.
T Consensus       162 l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  218 (220)
T 1aky_A          162 LVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  218 (220)
T ss_dssp             CBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            888988899999999999999999999999877789999999999999999998875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=100.00  E-value=5e-36  Score=241.43  Aligned_cols=209  Identities=44%  Similarity=0.842  Sum_probs=190.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|+|+|||||||+++.|++.+|+.++++|+++++.+..+++.|..+.+++..|..+++..+..++..++....+..+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~   80 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence            57999999999999999999999999999999999998888899999999999999999999999999888876544578


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      ||+||+|++..+...|.    ..+..|+.+|+|++|++++++|+..|..++.+|+.||..|.||+.++.|+.|+++|..|
T Consensus        81 ~i~dg~~~~~~~~~~l~----~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r  156 (214)
T 1e4v_A           81 FLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR  156 (214)
T ss_dssp             EEEESCCCSHHHHHHHH----HTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred             EEEeCCCCCHHHHHHHH----hcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccC
Confidence            99999999988776543    34567899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhc-----CcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKK-----GVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~-----~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      .+++.+.+++|+..|++.+.++.++|.+.     +.++.||++.+++++++.|.+.|+
T Consensus       157 ~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l~  214 (214)
T 1e4v_A          157 KDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG  214 (214)
T ss_dssp             TTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999864     579999999999999999998763

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=100.00  E-value=5.6e-36  Score=242.78  Aligned_cols=212  Identities=32%  Similarity=0.567  Sum_probs=190.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|+|||||||+++.|++.+|++++++|+++++....+++.|..+.+++..|..+++..+..++...+.... +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~   79 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDG   79 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCe
Confidence            5799999999999999999999999999999999999877788899999999999999999988888877765433 568


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC-CCccccccCCCCCCCC-CCCCCCCccc
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA-SGRSYHTKFAPPKVHG-FDDVTGEPLI  189 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~-~~~~y~~~~~~p~~~~-~~~~~~~~l~  189 (245)
                      +|+||+|++..+...+..++...+..|+.+|+|++|++++.+|+.+|..++. ||+.||..|+||..++ .|+.|++++.
T Consensus        80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~  159 (223)
T 2xb4_A           80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALS  159 (223)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEE
T ss_pred             EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccc
Confidence            9999999998888877766555667899999999999999999999988877 9999999999999888 9999999999


Q ss_pred             cCCCCcHH-HHHHHHHHHHHhhHHHHH---HHHh-----cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          190 QRKDDTAQ-VLKSRLEAFHKQTEPVID---YYAK-----KGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       190 ~~~~~~~~-~~~~rl~~~~~~~~~l~~---~~~~-----~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      .+.+++.+ .+++|+..|++.+.++.+   +|..     .+.++.||++.+++++++.|.+.|.
T Consensus       160 ~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l~  223 (223)
T 2xb4_A          160 ARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQLA  223 (223)
T ss_dssp             CCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence            99988888 999999999999999999   8976     5679999999999999999998763

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=100.00  E-value=3e-33  Score=227.18  Aligned_cols=209  Identities=43%  Similarity=0.755  Sum_probs=185.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .++++|+|+|+|||||||+++.|++.+|+.++++|++++.....+++.|..+.+++..|..+++.....++..++... .
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~   83 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-T   83 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-c
Confidence            457899999999999999999999999999999999999988888899999999999998899888777777777653 3


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      ..+||+|++|.+..+...+..+     ..++.+|+|++|++++.+|+..|..++.+|+.|+..+.||+.++.++.|++++
T Consensus        84 ~~~~vid~~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l  158 (227)
T 1zd8_A           84 QYSWLLDGFPRTLPQAEALDRA-----YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPL  158 (227)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTT-----SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCCEEEeCCCCCHHHHHHHHHh-----cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccc
Confidence            4689999999988776554432     46789999999999999999999888889999999999999999999999999


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ..|.++..+.+++|+..|.+...++.++|.+.+.++.||++ +++++++.|.+.|.
T Consensus       159 ~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~  213 (227)
T 1zd8_A          159 IQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQ  213 (227)
T ss_dssp             BCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHH
Confidence            99988889999999999999999999999877789999999 99999999998875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=100.00  E-value=2.7e-31  Score=214.81  Aligned_cols=206  Identities=34%  Similarity=0.671  Sum_probs=176.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .++++|+|+|+|||||||+++.|++.+++.++++|++++.....++..|..+.+++..|..+++..+..++..++.....
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence            45789999999999999999999999999999999999998888889999999999999999998888877766654322


Q ss_pred             -CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          109 -EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       109 -~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                       ..++|+||+|++..+...+.    ..+..|+++|+|++|++++.+|+..|..++.+|+.|+..|.||+.++.+    .+
T Consensus        83 ~~~~~vidg~~~~~~~~~~l~----~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~----~~  154 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA----SR  154 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGG----GG
T ss_pred             cCCcEEEECCCCCHHHHHHHH----HcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccc----cc
Confidence             36899999999987666543    3456789999999999999999999999999999999999999876654    46


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      +..+.++..+.+++|+..|+....++.++|..  .++.||++.+++++++.|.+.|.
T Consensus       155 l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~  209 (222)
T 1zak_A          155 LTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLG  209 (222)
T ss_dssp             CBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHH
Confidence            77777778889999999999988888887754  58899999999999999988764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.96  E-value=8.5e-28  Score=191.33  Aligned_cols=185  Identities=38%  Similarity=0.719  Sum_probs=159.8

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      .+..|++|+|+|+|||||||+++.|++.+|++++++|+++++....++..+..+.+++..|..+++.....++..++...
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~   95 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP   95 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence            44678899999999999999999999999999999999999988888889999999999998899988888888777654


Q ss_pred             CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                      ....++|+||+|.+..+...+..++...+..|+.+|+|++|++++.+|+..|.                           
T Consensus        96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~---------------------------  148 (201)
T 2cdn_A           96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---------------------------  148 (201)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---------------------------
Confidence            44568999999999988888877776666778999999999999999999873                           


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                          +++++.+.+++|+..|.....++.++|.  ..++.||++.+++++++.|.+.|+
T Consensus       149 ----r~~~~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          149 ----RADDTDDVILNRMKVYRDETAPLLEYYR--DQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             ----CTTCSHHHHHHHHHHHHHHTTTHHHHTT--TTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             ----CCCCCHHHHHHHHHHHHHhhHHHHHHhc--CcEEEEeCCCCHHHHHHHHHHHHc
Confidence                2345678888999999988888887773  467889999999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.95  E-value=1.8e-26  Score=181.21  Aligned_cols=183  Identities=37%  Similarity=0.679  Sum_probs=154.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      ++++|+|+|+|||||||+++.|++.+|++++++|++++..+..+++.+..+.+++..|...++......+...+..    
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~----   78 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE----   78 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----
Confidence            5789999999999999999999999999999999999988788888999999999999888888888777766542    


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI  189 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~  189 (245)
                       ++|+||++.+..+...+..++.+.+..|+.+|+|++|++++.+|+..|...                           .
T Consensus        79 -~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~---------------------------~  130 (186)
T 3cm0_A           79 -RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL---------------------------E  130 (186)
T ss_dssp             -EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH---------------------------H
T ss_pred             -CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc---------------------------C
Confidence             499999999988777776666665556899999999999999999887310                           0


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ++.+++.+.+++|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus       131 ~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          131 GRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG  185 (186)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence            1345677888999999988888888888876678899999999999999998764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.95  E-value=6.3e-26  Score=178.67  Aligned_cols=187  Identities=28%  Similarity=0.449  Sum_probs=157.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      ..+++|+|+|+|||||||+++.|++.+|++++++|++++.....+++.+..+.+++..|...++.....++...+... .
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~   82 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-Q   82 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-T
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-C
Confidence            346799999999999999999999999999999999999887788889999999999998888888888777776554 4


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      +.++|+||+|....+...+...+.. +..|+++|+|++|++++.+|+..|...                           
T Consensus        83 ~~~vi~d~~~~~~~~~~~~~~~~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~---------------------------  134 (194)
T 1qf9_A           83 GKNFLVDGFPRNEENNNSWEENMKD-FVDTKFVLFFDCPEEVMTQRLLKRGES---------------------------  134 (194)
T ss_dssp             TCCEEEETCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHTT---------------------------
T ss_pred             CCCEEEeCcCCCHHHHHHHHHHHhc-cCCCCEEEEEECCHHHHHHHHHhcccc---------------------------
Confidence            5689999999998887776655432 236889999999999999999987420                           


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ..+.++..+.+.+|+..|.+...++.++|...+.++.||++.+++++++.|.+.++
T Consensus       135 ~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~  190 (194)
T 1qf9_A          135 SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK  190 (194)
T ss_dssp             SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHH
Confidence            01456678899999999999888988888877778899999999999999988774

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.95  E-value=7.2e-26  Score=178.95  Aligned_cols=185  Identities=36%  Similarity=0.590  Sum_probs=152.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-C
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP-S  107 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~-~  107 (245)
                      .++++|+|+|+|||||||+++.|++.+|++++++|++++.....+++.+..+.+++..|..++......++...+... .
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence            356799999999999999999999999999999999999988778889999999998888888887777766655432 2


Q ss_pred             CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                      .+.++|+||+|....+...+...+    ..|+.+|+|++|++++.+|+..|....                         
T Consensus        87 ~~~~vi~d~~~~~~~~~~~~~~~~----~~~~~vi~l~~~~e~~~~R~~~R~~~~-------------------------  137 (196)
T 2c95_A           87 TSKGFLIDGYPREVQQGEEFERRI----GQPTLLLYVDAGPETMTQRLLKRGETS-------------------------  137 (196)
T ss_dssp             TCSCEEEESCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHTSS-------------------------
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHccCCcC-------------------------
Confidence            457899999999987776655432    468899999999999999998874210                         


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                        .+.+++.+.+.+|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus       138 --~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~  192 (196)
T 2c95_A          138 --GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD  192 (196)
T ss_dssp             --SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHH
Confidence              1234467788899999999998888888876778899999999999999988764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.94  E-value=2.3e-25  Score=175.73  Aligned_cols=187  Identities=26%  Similarity=0.498  Sum_probs=150.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc----
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK----  104 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~----  104 (245)
                      +|++|+|+|+|||||||+++.|++.+|++++++|++++....+ ++.++..+..++..|...++.....++...+.    
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            3679999999999999999999999999999999999887654 56778888888888888888765555543332    


Q ss_pred             CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCC
Q 025970          105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT  184 (245)
Q Consensus       105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~  184 (245)
                      ....+.++|+||+|.+..+...+...+.. ...|+.+|+|++|++++.+|+..|...                       
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~~~-----------------------  137 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDG-KADVSFVLFFDCNNEICIERCLERGKS-----------------------  137 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHHT-----------------------
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcc-cCCCCEEEEEECCHHHHHHHHHccccc-----------------------
Confidence            22235689999999998877666554432 246789999999999999999887420                       


Q ss_pred             CCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       185 ~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                          ..|++++.+.+++++..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus       138 ----~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  193 (196)
T 1tev_A          138 ----SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD  193 (196)
T ss_dssp             ----SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                12456678888999999999999999999877778899999999999999998874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.94  E-value=1.7e-25  Score=178.07  Aligned_cols=187  Identities=27%  Similarity=0.543  Sum_probs=151.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHH-cCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK  105 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~  105 (245)
                      .+.++++|+|+|+|||||||+++.|++.+|++++++|++++.... .++..+..+..++..|...++.....++...+..
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~   90 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD   90 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence            345677999999999999999999999999999999999998754 5678888898888888888887766666554432


Q ss_pred             C-CCC-CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCC
Q 025970          106 P-SCE-KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDV  183 (245)
Q Consensus       106 ~-~~~-~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~  183 (245)
                      . ..+ .+||+||+|++..+...+...+    ..|+++|+|++|++++.+|+..|...                      
T Consensus        91 ~l~~g~~~~i~dg~~~~~~~~~~~~~~~----~~~~~~i~l~~~~e~~~~Rl~~R~~~----------------------  144 (203)
T 1ukz_A           91 NVKANKHKFLIDGFPRKMDQAISFERDI----VESKFILFFDCPEDIMLERLLERGKT----------------------  144 (203)
T ss_dssp             HHHTTCCEEEEETCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHHH----------------------
T ss_pred             hhccCCCeEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHhcccc----------------------
Confidence            1 122 5799999999988777665432    35899999999999999999887421                      


Q ss_pred             CCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          184 TGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       184 ~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                           .++.+++.+.+++|+..|.+...++.++|...+.++.||++.+++++++.|.+.+.
T Consensus       145 -----~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~  200 (203)
T 1ukz_A          145 -----SGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR  200 (203)
T ss_dssp             -----HCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             -----CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence                 01235678889999999999999998888877788889999999999999998774

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.94  E-value=2.7e-25  Score=176.07  Aligned_cols=184  Identities=30%  Similarity=0.545  Sum_probs=150.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP-SC  108 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~-~~  108 (245)
                      .+++|+|+|+|||||||+++.|++.+|+.++++|++++.....+++.+..+.+++..|..+++.....++...+... ..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence            46799999999999999999999999999999999999887778888999999999888888887777776655432 23


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      +.++|+||+|.+..+...|...   . ..|+++|+|++|++++.+|+..|....                          
T Consensus        91 ~~~vi~dg~~~~~~~~~~l~~~---~-~~~~~~i~l~~~~~~~~~R~~~R~~~~--------------------------  140 (199)
T 2bwj_A           91 TRGFLIDGYPREVKQGEEFGRR---I-GDPQLVICMDCSADTMTNRLLQMSRSS--------------------------  140 (199)
T ss_dssp             CSCEEEETCCSSHHHHHHHHHH---T-CCCSEEEEEECCHHHHHHHHHHTCCCC--------------------------
T ss_pred             CccEEEeCCCCCHHHHHHHHHh---c-CCCCEEEEEECCHHHHHHHHHcCCCCC--------------------------
Confidence            5689999999998877665432   1 367899999999999999999885210                          


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                       .+.+++.+.+.+|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus       141 -~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  195 (199)
T 2bwj_A          141 -LPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID  195 (199)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence             0123345778889988999888888888776677899999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.94  E-value=2.1e-24  Score=177.02  Aligned_cols=208  Identities=39%  Similarity=0.723  Sum_probs=173.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      +|.+|+|+|++||||||+++.|++++|+..++.++++.......+..+..+..++..+...++..+...+...+... .+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-~~  104 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-RG  104 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-TT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Confidence            46899999999999999999999999999999999988766556667777877888888888877777776655433 34


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI  189 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~  189 (245)
                      .+++++|+|....+...+...     ..++.+|+|++|++++++|+..|..+..+|+.+...+.+|.---.++.|++++.
T Consensus       105 ~~~il~g~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~  179 (246)
T 2bbw_A          105 QHWLLDGFPRTLGQAEALDKI-----CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLV  179 (246)
T ss_dssp             SCEEEESCCCSHHHHHHHHTT-----CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCB
T ss_pred             CeEEEECCCCCHHHHHHHHhh-----cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccc
Confidence            578999999887554443321     457899999999999999999998888888777665778877777778888888


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ....+..+.+.+++..|.+...++.++|.+.+.++.||++.+ +++++.|.+.+.
T Consensus       180 ~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~  233 (246)
T 2bbw_A          180 QQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFS  233 (246)
T ss_dssp             CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHH
Confidence            887788899999999999999999999998888999999998 999999998875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.83  E-value=2.2e-18  Score=132.97  Aligned_cols=170  Identities=18%  Similarity=0.192  Sum_probs=117.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcC----CchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAK----TPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS  107 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~----~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~  107 (245)
                      ++|+|.|+|||||||+++.| +.+|+.+++++++++......    ...+.....+...   .+...+..++...+.. .
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-~   76 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-S   76 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS-C
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh-c
Confidence            68999999999999999999 999999999999999876542    2333333333332   1133455555555533 3


Q ss_pred             CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                      .+..+|+||+ ....+...+...+    ..++.+|+|++|++++.+|+..|...                          
T Consensus        77 ~~~~vi~dg~-~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~~--------------------------  125 (179)
T 3lw7_A           77 NHDLVVFDGV-RSLAEVEEFKRLL----GDSVYIVAVHSPPKIRYKRMIERLRS--------------------------  125 (179)
T ss_dssp             CCSCEEEECC-CCHHHHHHHHHHH----CSCEEEEEEECCHHHHHHHHHTCC----------------------------
T ss_pred             CCCeEEEeCC-CCHHHHHHHHHHh----CCCcEEEEEECCHHHHHHHHHhccCC--------------------------
Confidence            4578999998 8888877776654    35789999999999999999988520                          


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                         ....+.+.+.+++.....  .+...++...+  +.||++.+++++.+.|.+.+.
T Consensus       126 ---~~~~~~~~~~~r~~~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~  175 (179)
T 3lw7_A          126 ---DDSKEISELIRRDREELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTD  175 (179)
T ss_dssp             -----CCCHHHHHHHHHHHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHH
T ss_pred             ---CCcchHHHHHHHHHhhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence               012456666666533221  12333333333  567788899999999988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=1.8e-17  Score=131.38  Aligned_cols=175  Identities=14%  Similarity=0.199  Sum_probs=100.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHH
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGI   98 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~   98 (245)
                      ..+.++++..++.+|+|+|+|||||||+++.|++.+|+.+++.|+++.....  ....    .++.. |..........+
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i~----~~~~~~~~~~~~~~e~~~   87 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTVG----ELFTERGEAGFRELERNM   87 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCHH----HHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcHH----HHHHhcChHHHHHHHHHH
Confidence            3455566666778999999999999999999999999999999998766422  2222    22211 100001111222


Q ss_pred             HHHHHcCCCCCCceEEc---CCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh-CCcccCCCCccccccCCC
Q 025970           99 IDQAMKKPSCEKGFILD---GFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT-GRWIHPASGRSYHTKFAP  174 (245)
Q Consensus        99 l~~~l~~~~~~~~~iid---g~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~-~r~~~~~~~~~y~~~~~~  174 (245)
                      +...    .....+|++   |.+........+.        .++.+|||++|++++.+|+. .+...+            
T Consensus        88 l~~l----~~~~~~vi~~ggg~~~~~~~~~~l~--------~~~~vi~L~~~~e~l~~Rl~~~~~~Rp------------  143 (199)
T 3vaa_A           88 LHEV----AEFENVVISTGGGAPCFYDNMEFMN--------RTGKTVFLNVHPDVLFRRLRIAKQQRP------------  143 (199)
T ss_dssp             HHHH----TTCSSEEEECCTTGGGSTTHHHHHH--------HHSEEEEEECCHHHHHHHHHHTGGGCG------------
T ss_pred             HHHH----hhcCCcEEECCCcEEccHHHHHHHH--------cCCEEEEEECCHHHHHHHHhcCCCCCC------------
Confidence            2222    233567776   3333333333322        25789999999999999998 443211            


Q ss_pred             CCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHhhc
Q 025970          175 PKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK-PPKEVTVEVQKVLS  244 (245)
Q Consensus       175 p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~-~~e~v~~~i~~~l~  244 (245)
                                   +  ..+.+.+.+..++........+   +|...  -+.||++. +++++++.|.+.|.
T Consensus       144 -------------~--~~~~~~~~~~~~i~~~~~~r~~---~y~~a--d~~Idt~~~s~ee~~~~I~~~l~  194 (199)
T 3vaa_A          144 -------------I--LQGKEDDELMDFIIQALEKRAP---FYTQA--QYIFNADELEDRWQIESSVQRLQ  194 (199)
T ss_dssp             -------------G--GTTCCHHHHHHHHHHHHHHHHH---HHTTS--SEEEECCCCSSHHHHHHHHHHHH
T ss_pred             -------------C--cCCCChhhHHHHHHHHHHHHHH---HHhhC--CEEEECCCCCHHHHHHHHHHHHH
Confidence                         1  0133445555555555444433   45442  25677765 99999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.75  E-value=5.8e-17  Score=131.30  Aligned_cols=179  Identities=16%  Similarity=0.172  Sum_probs=113.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI-IDQAM  103 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-l~~~l  103 (245)
                      .+.++++|+|.|+|||||||+++.|++.++  ..++.+.      ...+++.|..+++++..+...++....-+ ...+.
T Consensus        22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~   95 (229)
T 4eaq_A           22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRR   95 (229)
T ss_dssp             CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999999996  4554432      23456788899998887765444333222 22232


Q ss_pred             cCC--------CCCCceEEc----------CCCCCHHHH--HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970          104 KKP--------SCEKGFILD----------GFPRTVVQA--EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA  163 (245)
Q Consensus       104 ~~~--------~~~~~~iid----------g~p~~~~~~--~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~  163 (245)
                      ...        ..+..+|+|          |+|++..+.  ..+..+ ...+..|+++|+|++|++++.+|+..|.... 
T Consensus        96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~-  173 (229)
T 4eaq_A           96 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF-AINGLYPDLTIYLNVSAEVGRERIIKNSRDQ-  173 (229)
T ss_dssp             HHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhcCCCc-
Confidence            221        123467889          887665332  334333 2345689999999999999999999884210 


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                .+.+.....+.+|+..++..+.   +.|  .+.+++||++.+++++++.|.+.|
T Consensus       174 --------------------------dr~e~~~~~~~~rv~~~y~~l~---~~~--~~~~~vIDa~~s~eev~~~I~~~l  222 (229)
T 4eaq_A          174 --------------------------NRLDQEDLKFHEKVIEGYQEII---HNE--SQRFKSVNADQPLENVVEDTYQTI  222 (229)
T ss_dssp             ---------------------------CCCHHHHHHHHHHHHHHHHHT---TTC--TTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             --------------------------cchhhhhHHHHHHHHHHHHHHH---HhC--CCCEEEEeCCCCHHHHHHHHHHHH
Confidence                                      1222233445555544322221   111  246899999999999999998876


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      .
T Consensus       223 ~  223 (229)
T 4eaq_A          223 I  223 (229)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.75  E-value=1.4e-16  Score=125.05  Aligned_cols=163  Identities=22%  Similarity=0.238  Sum_probs=104.1

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH-----------H
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G   97 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-----------~   97 (245)
                      |+|+|+|+|||||||+++.|++.+   |+++++++.      ...+..+..+.+++..|...+.....           .
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999998   999998853      22345666777777666544442211           1


Q ss_pred             HHHHHHcCCCCCCceEEc----------CCCCCH--HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970           98 IIDQAMKKPSCEKGFILD----------GFPRTV--VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus        98 ~l~~~l~~~~~~~~~iid----------g~p~~~--~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                      ++...+.   .+..+|+|          |+|...  .+...+..++ ..+..|+.+|+|++|++++.+|+.+|.      
T Consensus        75 ~i~~~l~---~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~l~~~~e~~~~Rl~~r~------  144 (195)
T 2pbr_A           75 KIIPDLK---RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFA-TRGVKPDITLLLDIPVDIALRRLKEKN------  144 (195)
T ss_dssp             THHHHHH---TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHTTT------
T ss_pred             HHHHHHh---CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHh-hcCCCCCEEEEEeCCHHHHHHHhhccC------
Confidence            1112222   22346666          555533  2333333222 233478999999999999999998642      


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                               +.+ .. .+..++ ..|.+..    ..|   +.++.||++.+++++++.|.+.+.
T Consensus       145 -------------------------~~~-~~-~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~  190 (195)
T 2pbr_A          145 -------------------------RFE-NK-EFLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALS  190 (195)
T ss_dssp             -------------------------CCC-CH-HHHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred             -------------------------ccc-hH-HHHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHH
Confidence                                     111 22 344444 3333321    122   367899999999999999988775

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.73  E-value=2.7e-18  Score=137.00  Aligned_cols=180  Identities=14%  Similarity=0.105  Sum_probs=110.6

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH-H
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ-A  102 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~  102 (245)
                      |.+...++++|+|+|+|||||||+++.|++.++..+++++ +++.. ..+++.+..+..++..+..++......+... +
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T 2wwf_A            3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANR   80 (212)
T ss_dssp             TTCCCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             ccchhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            3334456889999999999999999999999987777663 33321 1235667777777766666665433332221 1


Q ss_pred             ------HcC-CCCCCceEEcCCCCCHH--HHHH--H-HHHH---HhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcc
Q 025970          103 ------MKK-PSCEKGFILDGFPRTVV--QAEK--L-DEML---EKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRS  167 (245)
Q Consensus       103 ------l~~-~~~~~~~iidg~p~~~~--~~~~--l-~~~~---~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~  167 (245)
                            +.. ...+..+|+|+++.+..  +...  + ..++   ......|+.+|+|++|++++.+|+..|..       
T Consensus        81 ~~~~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~-------  153 (212)
T 2wwf_A           81 WEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE-------  153 (212)
T ss_dssp             HTTHHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS-------
T ss_pred             HHHHHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc-------
Confidence                  111 11234688999875421  1110  0 0111   11124689999999999999999865420       


Q ss_pred             ccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          168 YHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       168 y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                             +.+ . +.+..++...+..+..       ...+++||++.+++++++.|.+.+.
T Consensus       154 -----------------------r~~-~-~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~~~l~  198 (212)
T 2wwf_A          154 -----------------------IYE-K-VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIVKEVT  198 (212)
T ss_dssp             -----------------------TTC-S-HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHHHHHT
T ss_pred             -----------------------ccc-H-HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHHHHHH
Confidence                                   111 1 3445555433222221       2357889999999999999998875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.72  E-value=3.9e-16  Score=121.10  Aligned_cols=163  Identities=20%  Similarity=0.188  Sum_probs=94.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh-HhCcceeehHHHHHHHHHcCCc-----hHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD-EYCLCHLATGDMLRSAVAAKTP-----LGIKAKEAMDKGELVSDDLVVGIIDQAMK  104 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~-~~~~~~i~~~~li~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~~~l~~~l~  104 (245)
                      |++|+|.|+|||||||+++.|++ .+|+.+++.|.+ +......+.     +.......       ....+...+...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~-r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH-HHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence            46899999999999999999999 689999998654 443332111     11111110       12233344455553


Q ss_pred             CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCC
Q 025970          105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT  184 (245)
Q Consensus       105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~  184 (245)
                      ....+.++|+|+++.+..+...+...+...+. +..+|+|++|++++.+|+..|..                        
T Consensus        74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~~~~~~R~~~R~~------------------------  128 (181)
T 1ly1_A           74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRGT------------------------  128 (181)
T ss_dssp             SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCGG------------------------
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHhcccc------------------------
Confidence            32345789999999888777777665544433 45799999999999999998852                        


Q ss_pred             CCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       185 ~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                             ...+.+.+++++..|....     .+   ..+ .+|++.+ +++...|...+
T Consensus       129 -------~~~~~~~i~~~~~~~~~~~-----~~---~~~-~id~~~~-~~v~~~i~~~l  170 (181)
T 1ly1_A          129 -------KAVPIDVLRSMYKSMREYL-----GL---PVY-NGTPGKP-KAVIFDVDGTL  170 (181)
T ss_dssp             -------GCCCHHHHHHHHHHHHHHH-----TC---CCC--------------------
T ss_pred             -------CCCCHHHHHHHHHHhhccC-----CC---Ccc-ccCCCCC-ceeeehhhhhh
Confidence                   1235677777777776541     11   122 3777774 77777776655

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.71  E-value=2.1e-16  Score=125.37  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=102.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH---HHHHHHHHcCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDQAMKKPS  107 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~l~~~l~~~~  107 (245)
                      +++|+|+|++||||||+++.|++.+|..+++.|.+.....          ......|....+...   ...+...+   .
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~---~   84 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL---A   84 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH---T
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH---h
Confidence            6789999999999999999999999999999987642210          111122332222211   12222222   3


Q ss_pred             CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                      .+..+|+|+..........+..    ....+..+|+|++|++++.+|+..|..+                          
T Consensus        85 ~~~~vivd~~~~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~Rl~~R~~~--------------------------  134 (202)
T 3t61_A           85 SREPVVVSCSALKRSYRDKLRE----SAPGGLAFVFLHGSESVLAERMHHRTGH--------------------------  134 (202)
T ss_dssp             SSSCCEEECCCCSHHHHHHHHH----TSTTCCEEEEEECCHHHHHHHHHHHHSS--------------------------
T ss_pred             cCCCEEEECCCCCHHHHHHHHH----hcCCCeEEEEEeCCHHHHHHHHHHhhcc--------------------------
Confidence            3567899988776666655443    2244579999999999999999988521                          


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                           ....+.++.++..+.    ++   + .....+.||++.+++++++.|.+.|.
T Consensus       135 -----~~~~~~~~~~~~~~~----~~---~-~~~~~~~Id~~~~~~e~~~~I~~~l~  178 (202)
T 3t61_A          135 -----FMPSSLLQTQLETLE----DP---R-GEVRTVAVDVAQPLAEIVREALAGLA  178 (202)
T ss_dssp             -----CCCHHHHHHHHHHCC----CC---T-TSTTEEEEESSSCHHHHHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHhcC----CC---C-CCCCeEEEeCCCCHHHHHHHHHHHHH
Confidence                 112334433333322    11   1 12246789999999999999988774

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.71  E-value=5.5e-16  Score=123.40  Aligned_cols=173  Identities=16%  Similarity=0.196  Sum_probs=103.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH-HHHcC---
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID-QAMKK---  105 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~---  105 (245)
                      .+|+|.|++||||||+++.|++.+  |..++.+..      +.+++.|..+++++.++..++.....-++. .+..+   
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~   76 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL   76 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999988  555544311      235778899999888877666654332221 11111   


Q ss_pred             -----CCCCCceEEcCCC----------C--CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccc
Q 025970          106 -----PSCEKGFILDGFP----------R--TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSY  168 (245)
Q Consensus       106 -----~~~~~~~iidg~p----------~--~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y  168 (245)
                           +..+..+|.|.|.          +  .......+.... ..+..||++|||++|++++.+|+.+|....      
T Consensus        77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~------  149 (205)
T 4hlc_A           77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA-INGLYPDLTIYLNVSAEVGRERIIKNSRDQ------  149 (205)
T ss_dssp             THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHC-----------
T ss_pred             HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHH-hcCCCCCEEeeeCCCHHHHHHHHHhcCCcc------
Confidence                 1122345556442          1  123333333332 234789999999999999999999875211      


Q ss_pred             cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          169 HTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       169 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                           .|-+.....+..++      .....++... .+.+++||+++++++|++.|.+.|.
T Consensus       150 ---------------------dr~e~~~~~f~~~v------~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~  199 (205)
T 4hlc_A          150 ---------------------NRLDQEDLKFHEKV------IEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTII  199 (205)
T ss_dssp             -----------------------CCHHHHHHHHHH------HHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ---------------------cchhccCHHHHHHH------HHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence                                 01111111222222      2222233332 3469999999999999988877653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.69  E-value=6.3e-16  Score=120.70  Aligned_cols=164  Identities=13%  Similarity=0.144  Sum_probs=91.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      ++.|+|+|+|||||||+++.|++.+|++++++|.++.....  .........   .|..........++......   ..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~---~~   76 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADIAWIFEM---EGEAGFRRREREMIEALCKL---DN   76 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHHHHHHS---SS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CChhhHHHH---hCHHHHHHHHHHHHHHHHhc---CC
Confidence            55899999999999999999999999999999998776432  222111111   01000011222222222221   22


Q ss_pred             ceEEcC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH--hCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          111 GFILDG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI--TGRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       111 ~~iidg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~--~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                      .+|..|  .+........+..        ...+|||++|++++.+|+  ..+..                          
T Consensus        77 ~vi~~gg~~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~~~~~~~--------------------------  122 (185)
T 3trf_A           77 IILATGGGVVLDEKNRQQISE--------TGVVIYLTASIDTQLKRIGQKGEMR--------------------------  122 (185)
T ss_dssp             CEEECCTTGGGSHHHHHHHHH--------HEEEEEEECCHHHHHHHHHCCTTCS--------------------------
T ss_pred             cEEecCCceecCHHHHHHHHh--------CCcEEEEECCHHHHHHHHhhcCCCC--------------------------
Confidence            344443  2233333333322        248999999999999999  44321                          


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-ChhHHHHHHHHhhc
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK-PPKEVTVEVQKVLS  244 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~-~~e~v~~~i~~~l~  244 (245)
                          |+.........++........+   +|.... -+.||++. +++++++.|.+.+.
T Consensus       123 ----rp~~~~~~~~~~l~~~~~~r~~---~y~~~a-d~~Idt~~~~~~e~~~~I~~~l~  173 (185)
T 3trf_A          123 ----RPLFIKNNSKEKLQQLNEIRKP---LYQAMA-DLVYPTDDLNPRQLATQILVDIK  173 (185)
T ss_dssp             ----SCCCCCHHHHHHHHHHHHHHHH---HHHHHC-SEEEECTTCCHHHHHHHHHHHSC
T ss_pred             ----CCCCCCCCHHHHHHHHHHHHHH---HHhhcC-CEEEECCCCCHHHHHHHHHHHHH
Confidence                2222222222333333333333   333211 25677765 89999999988775

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.69  E-value=4.6e-16  Score=121.79  Aligned_cols=175  Identities=14%  Similarity=0.167  Sum_probs=96.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS--DDLVVGIIDQAM  103 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~l~~~l  103 (245)
                      +++|+|+|+|||||||+++.|+++++     +.+++++++++......... ....+.   ....+  ...+...+...+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~i   78 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKMAGRKI   78 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHHHHHHH
Confidence            57999999999999999999999998     99999999988754321100 000000   00000  111222222222


Q ss_pred             cCCCCCCceEEcCCCCCHHHHHH---H-HHHHHhcCCCccEEEEEecCHHHHHH-HHhC--CcccCCCCccccccCCCCC
Q 025970          104 KKPSCEKGFILDGFPRTVVQAEK---L-DEMLEKQGTKIDKVLNFAIDDSILEE-RITG--RWIHPASGRSYHTKFAPPK  176 (245)
Q Consensus       104 ~~~~~~~~~iidg~p~~~~~~~~---l-~~~~~~~~~~~~~vi~L~~~~e~~~~-R~~~--r~~~~~~~~~y~~~~~~p~  176 (245)
                      ........+|+|+++........   + .+.+..  ..|+++|||++|++++.+ |+..  |.                 
T Consensus        79 ~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~rRl~~~~R~-----------------  139 (192)
T 1kht_A           79 AEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE--LNPDLIIVVETTGDEILMRRMSDETRV-----------------  139 (192)
T ss_dssp             HHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHTSSSCS-----------------
T ss_pred             HhhccCCeEEEccceeccccccccccCcHHHHhc--cCCCEEEEEeCCHHHHHHHHhhhcccC-----------------
Confidence            21112357899987542110000   0 011111  136889999999999996 9987  53                 


Q ss_pred             CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEE-eCCCChhHHHHHHHHhhc
Q 025970          177 VHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQL-HAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~i-d~~~~~e~v~~~i~~~l~  244 (245)
                                    ++....+.+..+... ..........|.. ..++.+ +++.+++++++.|.+.|.
T Consensus       140 --------------r~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i~  192 (192)
T 1kht_A          140 --------------RDLDTASTIEQHQFM-NRCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVLR  192 (192)
T ss_dssp             --------------SSCCCHHHHHHHHHH-HHHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             --------------CCcCCHHHHHHHHHH-HHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHhC
Confidence                          123333333332222 1122222223322 234454 555679999999988763

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.67  E-value=3.2e-16  Score=126.43  Aligned_cols=175  Identities=15%  Similarity=0.175  Sum_probs=105.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ  101 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~  101 (245)
                      .++++|+|.|++||||||+++.|++.++       +.++.+    ++  ..+++.|+.+++++.++...+.....-....
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~   96 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG   96 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4788999999999999999999999984       333322    21  2467889999999888754433322222222


Q ss_pred             HHcC--------CCCCCceEEcCCCCC------------HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCccc
Q 025970          102 AMKK--------PSCEKGFILDGFPRT------------VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIH  161 (245)
Q Consensus       102 ~l~~--------~~~~~~~iidg~p~~------------~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~  161 (245)
                      +...        +..+..+|.|.|..+            ......+..+. ..+..||++|||++|++++.+|+..|.. 
T Consensus        97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~-~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-  174 (227)
T 3v9p_A           97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWV-QGGFQPDLTVLFDVPPQIASARRGAVRM-  174 (227)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCSSCGGGTTTCCCC-
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHH-hcCCCCCEEEEEeCCHHHHHHHHHhccC-
Confidence            2221        112345667865322            22333333322 2347899999999999999999998741 


Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHH
Q 025970          162 PASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQ  240 (245)
Q Consensus       162 ~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~  240 (245)
                         ..                        +.+.....+..++ +.|.+.    .+.+  .+.+++||++.+++++.+.|.
T Consensus       175 ---~d------------------------r~E~~~~ef~~rv~~~Y~~l----a~~~--~~~~~vIDa~~s~eeV~~~I~  221 (227)
T 3v9p_A          175 ---PD------------------------KFESESDAFFARTRAEYLRR----AQEA--PHRFVIVDSSEPIAQIRKQLE  221 (227)
T ss_dssp             ---C---------------------------CCHHHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHH
T ss_pred             ---cc------------------------chhhhhHHHHHHHHHHHHHH----HHHh--cCCEEEEeCCCCHHHHHHHHH
Confidence               00                        1122122333333 333221    1111  346999999999999999999


Q ss_pred             Hhhc
Q 025970          241 KVLS  244 (245)
Q Consensus       241 ~~l~  244 (245)
                      +.|.
T Consensus       222 ~~l~  225 (227)
T 3v9p_A          222 GVLA  225 (227)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.67  E-value=3.4e-15  Score=119.51  Aligned_cols=174  Identities=17%  Similarity=0.187  Sum_probs=107.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcCC--CCCHHHHH-HHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE--LVSDDLVV-GIIDQAM  103 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~-~~l~~~l  103 (245)
                      ++++|+|.|++||||||+++.|++.++   +.++.+.    +  ..++++|..+++++.++.  .+.+.... -....+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~----~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~   78 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR----E--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA   78 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----S--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc----C--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999884   4554432    1  246788999999988764  34333221 1112222


Q ss_pred             cC--------CCCCCceEEcCCC------------CCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970          104 KK--------PSCEKGFILDGFP------------RTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA  163 (245)
Q Consensus       104 ~~--------~~~~~~~iidg~p------------~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~  163 (245)
                      .+        +..+..+|.|.|.            ........+..+. ..+..||++|+|++|++++.+|+..|..   
T Consensus        79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~-~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~---  154 (213)
T 4edh_A           79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFV-QGDLRPDLTLVFDLPVEIGLARAAARGR---  154 (213)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHCCCSS---
T ss_pred             HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHH-hcCCCCCEEEEEeCCHHHHHHHHHhcCC---
Confidence            11        1123446666431            1223333333322 2357899999999999999999998841   


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCCC-cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHh
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDD-TAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKV  242 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~-~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~  242 (245)
                       ..                        +.+. ..+.+++..+.|.+.    .+.+  .+.+++||++.+++++++.|.+.
T Consensus       155 -~d------------------------r~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eeV~~~I~~~  203 (213)
T 4edh_A          155 -LD------------------------RFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPLAEVQAGLDRL  203 (213)
T ss_dssp             -CC------------------------TTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHH
T ss_pred             -cC------------------------cccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCHHHHHHHHHHH
Confidence             00                        1111 223333323333332    1122  24699999999999999999887


Q ss_pred             hc
Q 025970          243 LS  244 (245)
Q Consensus       243 l~  244 (245)
                      |.
T Consensus       204 l~  205 (213)
T 4edh_A          204 LP  205 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.67  E-value=1.7e-15  Score=118.68  Aligned_cols=167  Identities=14%  Similarity=0.149  Sum_probs=96.1

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSD--DLVVGIIDQAM  103 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~--~~~~~~l~~~l  103 (245)
                      ++|+|+|+|||||||+++.|+++++     +.+++.++++.+.+.. ....+.   ..+  +...+.  ..+...+..++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHHH
Confidence            4799999999999999999999998     8899988888765521 111110   000  112222  11221122222


Q ss_pred             cCC---CCCCceEEcCCCCCHHH--------HHHHHHHHHhcCCCccEEEEEecCHHHHHHH-HhC--CcccCCCCcccc
Q 025970          104 KKP---SCEKGFILDGFPRTVVQ--------AEKLDEMLEKQGTKIDKVLNFAIDDSILEER-ITG--RWIHPASGRSYH  169 (245)
Q Consensus       104 ~~~---~~~~~~iidg~p~~~~~--------~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R-~~~--r~~~~~~~~~y~  169 (245)
                      ...   ..+..+|+|+++....+        ...+..      ..|+.+|+|++|++++++| +..  |..         
T Consensus        77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~l~~~~~~~~~rr~~~~~R~~---------  141 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE------INPSVIFLLEADPKIILSRQKRDTTRNR---------  141 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH------HCCSEEEEEECCHHHHHHHHHHCTTTCC---------
T ss_pred             HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh------cCCCEEEEEeCCHHHHHHHHHhhcccCC---------
Confidence            111   23467899987432211        122222      1478999999999998866 766  531         


Q ss_pred             ccCCCCCCCCCCCCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHHhcCcEEEE-eCCCChhHHHHHHHHhh
Q 025970          170 TKFAPPKVHGFDDVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYAKKGVLAQL-HAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       170 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~~~~~~~~i-d~~~~~e~v~~~i~~~l  243 (245)
                                           .+....+.+.  .++...   .......|. ...++.| |++.+++++++.|.+.|
T Consensus       142 ---------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          142 ---------------------NDYSDESVILETINFARY---AATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             ---------------------CCCCSHHHHHHHHHHHHH---HHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             ---------------------CCccCHHHHHHHHHHHHH---HHHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence                                 0111222222  222222   122222232 2457888 99999999999998876

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.67  E-value=1.7e-15  Score=116.37  Aligned_cols=158  Identities=20%  Similarity=0.281  Sum_probs=92.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      |+|+|+|+|||||||+++.|++.+|++++++|++.+...      |..+.+++.. |......+...++ ..+.   ...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~---~~~   70 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS---EKE   70 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT---TSS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh---ccC
Confidence            579999999999999999999999999999999887643      2222222221 2111111111122 2222   234


Q ss_pred             ceEEc-CC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          111 GFILD-GF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       111 ~~iid-g~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                      .+|++ |.  +........    +.    .++.+|+|++|++++.+|+..|...+                         
T Consensus        71 ~~Vi~~g~~~~~~~~~~~~----l~----~~~~~i~l~~~~e~~~~R~~~r~~r~-------------------------  117 (168)
T 2pt5_A           71 NVVISTGGGLGANEEALNF----MK----SRGTTVFIDIPFEVFLERCKDSKERP-------------------------  117 (168)
T ss_dssp             SEEEECCHHHHTCHHHHHH----HH----TTSEEEEEECCHHHHHHHCBCTTCCB-------------------------
T ss_pred             CeEEECCCCEeCCHHHHHH----HH----cCCEEEEEECCHHHHHHHHhCCCCCC-------------------------
Confidence            56665 31  122222221    21    25899999999999999998874100                         


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ...   +..+.++.++..    .   ...|.. ..++. +++.+++++++.|.+.+.
T Consensus       118 ~~~---~~~~~i~~~~~~----~---~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~  162 (168)
T 2pt5_A          118 LLK---RPLDEIKNLFEE----R---RKIYSK-ADIKV-KGEKPPEEVVKEILLSLE  162 (168)
T ss_dssp             GGG---SCGGGTHHHHHH----H---HHHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred             CCc---chHHHHHHHHHH----H---HHHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence            000   111222222221    1   123333 34555 778999999999998775

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.66  E-value=4.3e-15  Score=116.15  Aligned_cols=116  Identities=18%  Similarity=0.331  Sum_probs=74.1

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHhH-hCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCC---CHHHHHHHH
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE-YCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV---SDDLVVGII   99 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~-~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~l   99 (245)
                      +++.+.++++|+|+|+|||||||+++.|++. +|++++++|+++++. ......+..    +.. ..+   ++......+
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~----~~~-~~~~r~~~~~~~~~l   76 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTE----LDT-HIIEEKDEDRLLDFM   76 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHH
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHH----hhh-cccCCCCHHHHHHHH
Confidence            3566777889999999999999999999999 799999999998873 111122221    111 122   233333334


Q ss_pred             HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ...+..   ..+++++......     |    ..  ..++.+|+|++|++++.+|+..|.
T Consensus        77 ~~~~~~---~g~~vi~~~~~~~-----~----~~--~~~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           77 EPIMVS---RGNHVVDYHSSEL-----F----PE--RWFHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             HHHHTS---SSEEEEECSCCTT-----S----CG--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             HHHHhc---cCCEEEeCchHhh-----h----hh--ccCCEEEEEECCHHHHHHHHHhCC
Confidence            443322   3477888653211     1    00  125789999999999999999874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.66  E-value=2.3e-15  Score=115.89  Aligned_cols=146  Identities=15%  Similarity=0.104  Sum_probs=89.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHH--HHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIK--AKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      ++|+|+|+|||||||+++.|++.+|+.+++.|.+.....    .....  ....+..+                      
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~~~~~~~~~~l~~~----------------------   55 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GNEKLFEHFNKLADE----------------------   55 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CHHHHHHHHHHHTTC----------------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HHHHHHHHHHHHHhC----------------------
Confidence            479999999999999999999999999999987654321    00110  00111111                      


Q ss_pred             CceEEcCC---------------CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCC
Q 025970          110 KGFILDGF---------------PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAP  174 (245)
Q Consensus       110 ~~~iidg~---------------p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~  174 (245)
                      ..++.|.+               .........+...    ...|+.+|||++|++++.+|+..|..              
T Consensus        56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~i~l~~~~e~~~~R~~~r~r--------------  117 (173)
T 3kb2_A           56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDK----IKAKAKVVYLHADPSVIKKRLRVRGD--------------  117 (173)
T ss_dssp             CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHH----HTTTEEEEEEECCHHHHHHHHHHHSC--------------
T ss_pred             CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhcc----CCCCCEEEEEeCCHHHHHHHHHhcCC--------------
Confidence            22333311               1222333333322    25689999999999999999988731              


Q ss_pred             CCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          175 PKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       175 p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                                       +....+.+++..+.|.    .....|.  ...++||++ .+++++++.|.+.++
T Consensus       118 -----------------~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~  165 (173)
T 3kb2_A          118 -----------------EYIEGKDIDSILELYR----EVMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVE  165 (173)
T ss_dssp             -----------------SCCCHHHHHHHHHHHH----HHHHTCS--SCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred             -----------------cchhhhHHHHHHHHHH----HHHhhcC--CCEEEEECCCCCHHHHHHHHHHHHh
Confidence                             1122223333233322    2222332  257889998 599999999988764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.66  E-value=3.7e-15  Score=114.88  Aligned_cols=161  Identities=13%  Similarity=0.132  Sum_probs=95.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      ++|+|+|+|||||||+++.|++.+|+++++.|.+++...  +......+..   .|..........++ ..+.    ...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~~~~~~~~~~~~~~-~~l~----~~~   72 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EGWPGFRRRESEAL-QAVA----TPN   72 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HHHHHHHHHHHHHH-HHHC----CSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHHHHHH---cCHHHHHHHHHHHH-HHhh----cCC
Confidence            479999999999999999999999999999999887642  2222221110   01100011111122 2232    334


Q ss_pred             eEEc-CC--CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh--CCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          112 FILD-GF--PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT--GRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       112 ~iid-g~--p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~--~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                      +|++ |.  +........+.        .++.+|+|++|++++.+|+.  .|..+                         
T Consensus        73 ~vi~~g~~~~~~~~~~~~l~--------~~~~~i~l~~~~e~~~~R~~~~~r~~~-------------------------  119 (173)
T 1e6c_A           73 RVVATGGGMVLLEQNRQFMR--------AHGTVVYLFAPAEELALRLQASLQAHQ-------------------------  119 (173)
T ss_dssp             EEEECCTTGGGSHHHHHHHH--------HHSEEEEEECCHHHHHHHHHHHHCSCC-------------------------
T ss_pred             eEEECCCcEEeCHHHHHHHH--------cCCeEEEEECCHHHHHHHHhhccCCCC-------------------------
Confidence            5664 42  22222222221        24799999999999999998  76210                         


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                          ++....+....++..+.....+   +|...  .+.||++ .+++++.+.|.+.+.
T Consensus       120 ----r~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A          120 ----RPTLTGRPIAEEMEAVLREREA---LYQDV--AHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             ----CCCTTHHHHHHHHHHHHHHHHH---HHHHH--CSEEEETTSCHHHHHHHHHHHTT
T ss_pred             ----CCcCCCCCHHHHHHHHHHHHHH---HHHhC--cEEEECCCCCHHHHHHHHHHHhc
Confidence                1222223334445544443332   33332  3568887 899999999998875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.65  E-value=1.4e-15  Score=120.33  Aligned_cols=169  Identities=12%  Similarity=0.029  Sum_probs=101.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH--HHHc--
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID--QAMK--  104 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~--~~l~--  104 (245)
                      ++++|+|+|+|||||||+++.|++.+ |+.+++++...     ..+..|..+..++..+..++.... .++.  .+..  
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~   76 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA   76 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence            57899999999999999999999998 68787764211     134567778888776554444322 2110  1110  


Q ss_pred             ----C-CCCCCceEEcCCCCCHHH--------HHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccccc
Q 025970          105 ----K-PSCEKGFILDGFPRTVVQ--------AEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTK  171 (245)
Q Consensus       105 ----~-~~~~~~~iidg~p~~~~~--------~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~  171 (245)
                          . ...+..+|+|+++.+...        ...+. .+......|+.+|||++|++++.+   .|..+          
T Consensus        77 ~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~-~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d----------  142 (204)
T 2v54_A           77 SFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSK-SYESGLPKPDLVIFLESGSKEINR---NVGEE----------  142 (204)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHH-HHHTTSBCCSEEEEECCCHHHHTT---CCSSS----------
T ss_pred             HHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHH-HHhcCCCCCCEEEEEeCCHHHHHh---hcCcc----------
Confidence                0 112346888988754321        11111 122223478999999999998877   33210          


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          172 FAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       172 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                         +.+ . ..+..++...+..+.   +.  ....+++||++.+++++++.|.+.+.
T Consensus       143 -------------------~~e-~-~~~~~rl~~~y~~~~---~~--~~~~~~~Id~~~~~~~v~~~i~~~l~  189 (204)
T 2v54_A          143 -------------------IYE-D-VTFQQKVLQEYKKMI---EE--GDIHWQIISSEFEEDVKKELIKNIVI  189 (204)
T ss_dssp             -------------------TTC-C-SHHHHHHHHHHHHHH---TT--CSSCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             -------------------ccc-H-HHHHHHHHHHHHHHH---Hh--CCCcEEEEECCCCHHHHHHHHHHHHH
Confidence                               001 1 244455543222111   01  12357899999999999999988764

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.65  E-value=1.8e-14  Score=113.97  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=97.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH------H
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ------A  102 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~------~  102 (245)
                      |+|+|.|+.||||||+++.|++.+   |..++.+..      +.+++.+..+..++..+...|.....-....      .
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999888   565554421      2356677777776665544333221111111      1


Q ss_pred             Hc-CCCCCCceEEcCCCCC------------HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccc
Q 025970          103 MK-KPSCEKGFILDGFPRT------------VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYH  169 (245)
Q Consensus       103 l~-~~~~~~~~iidg~p~~------------~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~  169 (245)
                      +. .+..+..+|.|.|..+            ......+... ...+..||++|+|++|++++.+|...+.          
T Consensus        75 I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~-~~~~~~PDl~i~Ld~~~e~~~~R~~~~d----------  143 (197)
T 3hjn_A           75 IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDF-ATDGLIPDLTFYIDVDVETALKRKGELN----------  143 (197)
T ss_dssp             HHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHC---C----------
T ss_pred             HHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhh-hhcCCCCCceeecCcChHHHHHhCcCcC----------
Confidence            11 1122344566654221            2222222222 2335789999999999999999954432          


Q ss_pred             ccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          170 TKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       170 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                                           |-. ..+ +..++ +.|.+       .... ...+++|||++++++|++.|.+.|+.
T Consensus       144 ---------------------r~e-~~e-f~~rv~~~y~~-------la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~  191 (197)
T 3hjn_A          144 ---------------------RFE-KRE-FLERVREGYLV-------LAREHPERIVVLDGKRSIEEIHRDVVREVKR  191 (197)
T ss_dssp             ---------------------TTC-CHH-HHHHHHHHHHH-------HHHHCTTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred             ---------------------ccc-cHH-HHHHHHHHHHH-------HHHhCCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence                                 111 122 33332 33322       2222 24689999999999999999988753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.65  E-value=9.9e-16  Score=119.53  Aligned_cols=160  Identities=19%  Similarity=0.257  Sum_probs=90.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      ++|+|+|+|||||||+++.|++.+|+++++.|++++....  ...    .+++. .|..........++...+..    .
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~----~   72 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RSI----ADIFATDGEQEFRRIEEDVVRAALAD----H   72 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SCH----HHHHHHHCHHHHHHHHHHHHHHHHHH----C
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CCH----HHHHHHhChHHHHHHHHHHHHHHHhc----C
Confidence            5799999999999999999999999999999998876532  221    12221 12111112222222222211    1


Q ss_pred             ceEE-cCCC--CCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          111 GFIL-DGFP--RTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       111 ~~ii-dg~p--~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                      .+|+ +|..  .......    .+.     ++.+|+|++|++++.+|+..|...+                         
T Consensus        73 ~~vi~~g~~~v~~~~~~~----~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~-------------------------  118 (184)
T 2iyv_A           73 DGVLSLGGGAVTSPGVRA----ALA-----GHTVVYLEISAAEGVRRTGGNTVRP-------------------------  118 (184)
T ss_dssp             CSEEECCTTGGGSHHHHH----HHT-----TSCEEEEECCHHHHHHHTTCCCCCS-------------------------
T ss_pred             CeEEecCCcEEcCHHHHH----HHc-----CCeEEEEeCCHHHHHHHHhCCCCCC-------------------------
Confidence            2333 3321  1111111    111     4689999999999999998874211                         


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                      +.. ..+..+    ++..+.....   .+|.... .+.||++ .+++++++.|.+.+.
T Consensus       119 ~~~-~~~~~~----~i~~~~~~r~---~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~  167 (184)
T 2iyv_A          119 LLA-GPDRAE----KYRALMAKRA---PLYRRVA-TMRVDTNRRNPGAVVRHILSRLQ  167 (184)
T ss_dssp             STT-SCCHHH----HHHHHHHHHH---HHHHHHC-SEEEECSSSCHHHHHHHHHTTSC
T ss_pred             Ccc-CCCHHH----HHHHHHHHHH---HHHhccC-CEEEECCCCCHHHHHHHHHHHHh
Confidence            000 111222    2333222222   2333212 3678888 899999999988764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.65  E-value=1.5e-15  Score=123.17  Aligned_cols=179  Identities=18%  Similarity=0.157  Sum_probs=101.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC---CCCCHHHHHH-HHHHHHc
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG---ELVSDDLVVG-IIDQAMK  104 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~-~l~~~l~  104 (245)
                      -++++|+|.|++||||||+++.|++.++...++...+.++  ..++++|+.+++++..+   ..+.+....- ....+..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~  102 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ  102 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999885433331112222  24678899999988632   2344332211 1111111


Q ss_pred             C--------CCCCCceEEcCCC----------C--CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970          105 K--------PSCEKGFILDGFP----------R--TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus       105 ~--------~~~~~~~iidg~p----------~--~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                      .        +..+..+|.|.|.          +  .......+..+.. .+..||++|+|++|++++.+|+.+|...   
T Consensus       103 ~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~-~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~---  178 (236)
T 3lv8_A          103 LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTAL-GDFKPDLTLYLDIDPKLGLERARGRGEL---  178 (236)
T ss_dssp             HHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHH-TTCCCSEEEEEECCHHHHHHC-----CC---
T ss_pred             HHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHHhcCCc---
Confidence            1        1123456666431          1  2233333333322 2478999999999999999999988410   


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                       .                        +.+.....+..++...      ..++......+++||++++++++.+.|.+.|.
T Consensus       179 -d------------------------r~E~~~~~~~~rv~~~------y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~  227 (236)
T 3lv8_A          179 -D------------------------RIEKMDISFFERARER------YLELANSDDSVVMIDAAQSIEQVTADIRRALQ  227 (236)
T ss_dssp             -C------------------------TTTTSCHHHHHHHHHH------HHHHHHHCTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred             -c------------------------hhhhhHHHHHHHHHHH------HHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence             0                        1111112333333221      22233332348999999999999999988764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.64  E-value=8.2e-15  Score=116.40  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=95.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCC-----CC---------------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL-----VS---------------   91 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-----~~---------------   91 (245)
                      ++|+|+|++||||||+++.|++ +|++++++|++.+....++......+...+.....     +.               
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            4799999999999999999998 99999999999876543333222222222221110     10               


Q ss_pred             ---HHHHH----HHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970           92 ---DDLVV----GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus        92 ---~~~~~----~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                         .....    ..+...+... ...++|+++. ......  +       ...++.+|+|++|++++.+|+..|.     
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~-~l~e~~--~-------~~~~d~vi~l~~~~e~~~~Rl~~R~-----  145 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQ-TAPYTLFVVP-LLIENK--L-------TALCDRILVVDVSPQTQLARSAQRD-----  145 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC-CSSEEEEECT-TTTTTT--C-------GGGCSEEEEEECCHHHHHHHHC--------
T ss_pred             HHHHhccCHHHHHHHHHHHHhc-CCCEEEEEec-hhhhcC--c-------HhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence               00011    1111222222 2346777863 221110  1       1246899999999999999998873     


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChh----HHHHHHH
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPK----EVTVEVQ  240 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e----~v~~~i~  240 (245)
                                                  +.+.+.+.+++..    ..+..+.+...+  ++||++.+++    ++.+.|.
T Consensus       146 ----------------------------~~~~e~~~~r~~~----q~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~  191 (206)
T 1jjv_A          146 ----------------------------NNNFEQIQRIMNS----QVSQQERLKWAD--DVINNDAELAQNLPHLQQKVL  191 (206)
T ss_dssp             ------------------------------CHHHHHHHHHH----SCCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHH
T ss_pred             ----------------------------CCCHHHHHHHHHh----cCChHHHHHhCC--EEEECCCCccccHHHHHHHHH
Confidence                                        2245566666654    123344444444  5688888999    9999888


Q ss_pred             Hhhc
Q 025970          241 KVLS  244 (245)
Q Consensus       241 ~~l~  244 (245)
                      +.+.
T Consensus       192 ~~~~  195 (206)
T 1jjv_A          192 ELHQ  195 (206)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.64  E-value=1.7e-14  Score=115.41  Aligned_cols=173  Identities=16%  Similarity=0.165  Sum_probs=104.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---Cc-ceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHHHHH-H
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CL-CHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLVVGI-I   99 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~-~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~-l   99 (245)
                      ++++|+|.|++||||||+++.|++.+   |+ .++.+    ++  +.++++|+.+++++...     ..+.+....-+ .
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~   75 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY   75 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence            36799999999999999999999988   33 22222    11  24678999999998732     33444321111 1


Q ss_pred             HHHHcC--------CCCCCceEEcCCCC------------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          100 DQAMKK--------PSCEKGFILDGFPR------------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       100 ~~~l~~--------~~~~~~~iidg~p~------------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ..+...        +..+..+|.|.|..            .......+..+. ..+..||++|||++|++++++|+.+|.
T Consensus        76 A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~-~~~~~PDl~i~Ldv~~e~~~~Ri~~R~  154 (213)
T 4tmk_A           76 AARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV-LGDFRPDLTLYLDVTPEVGLKRARARG  154 (213)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHh-ccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            111111        11234456665321            223333333332 234789999999999999999999874


Q ss_pred             ccCCCCccccccCCCCCCCCCCCCCCCccccCCCC-cHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHH
Q 025970          160 IHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDD-TAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVE  238 (245)
Q Consensus       160 ~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~-~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~  238 (245)
                      ..    .                        +.+. ..+.+++..+.|.+       +....+.+++||++.+++++++.
T Consensus       155 ~~----d------------------------r~E~~~~~f~~rv~~~y~~-------la~~~~~~~vIDa~~s~eeV~~~  199 (213)
T 4tmk_A          155 EL----D------------------------RIEQESFDFFNRTRARYLE-------LAAQDKSIHTIDATQPLEAVMDA  199 (213)
T ss_dssp             SC----C------------------------TTTTSCHHHHHHHHHHHHH-------HHHTCTTEEEEETTSCHHHHHHH
T ss_pred             Cc----c------------------------chhhhHHHHHHHHHHHHHH-------HHHHCCcEEEECCCCCHHHHHHH
Confidence            10    0                        1111 22222222233332       22223579999999999999999


Q ss_pred             HHHhhc
Q 025970          239 VQKVLS  244 (245)
Q Consensus       239 i~~~l~  244 (245)
                      |.+.|.
T Consensus       200 I~~~l~  205 (213)
T 4tmk_A          200 IRTTVT  205 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.63  E-value=1.7e-15  Score=121.47  Aligned_cols=164  Identities=17%  Similarity=0.191  Sum_probs=99.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHHHH-------
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-----GELVSDDLVVG-------   97 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~-------   97 (245)
                      ++++|+|+|++||||||+++.|++ +|++++++|.+++....++......+...+..     ...+....+..       
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            468999999999999999999998 99999999999887554444333444433321     11122211111       


Q ss_pred             -----------HHH----HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccC
Q 025970           98 -----------IID----QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHP  162 (245)
Q Consensus        98 -----------~l~----~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~  162 (245)
                                 .+.    ..+...  ..++++.+.|......  +.       ..|+.+|||++|++++.+|+..|.   
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~~~l~~~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~R~---  147 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENS--LY-------KKANRVLVVDVSPETQLKRTMQRD---  147 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEECTTTTTTT--GG-------GGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEeeeeeccC--cc-------ccCCEEEEEECCHHHHHHHHHHcC---
Confidence                       111    111111  1234443444432221  11       347899999999999999998763   


Q ss_pred             CCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHh
Q 025970          163 ASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKV  242 (245)
Q Consensus       163 ~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~  242 (245)
                                                    ..+.+.+..++...    .+...++...+  +.||++.+++++.+.|.+.
T Consensus       148 ------------------------------~~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~  191 (218)
T 1vht_A          148 ------------------------------DVTREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARL  191 (218)
T ss_dssp             ------------------------------TCCHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHH
T ss_pred             ------------------------------CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHHHHHHH
Confidence                                          22344555555431    12223333333  5788888999999999877


Q ss_pred             hc
Q 025970          243 LS  244 (245)
Q Consensus       243 l~  244 (245)
                      +.
T Consensus       192 l~  193 (218)
T 1vht_A          192 HA  193 (218)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.63  E-value=2.9e-14  Score=110.83  Aligned_cols=160  Identities=11%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCccee-ehHHHHHHHHHcCCchHHHHHHHHHcCCCC----CH--HHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL-ATGDMLRSAVAAKTPLGIKAKEAMDKGELV----SD--DLVVGIIDQ  101 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i-~~~~li~~~~~~~~~~~~~i~~~l~~~~~~----~~--~~~~~~l~~  101 (245)
                      .++++|+|+|+|||||||+++.|++.+|.+++ +.+.           .+..+.+++..|...    ..  ..+...+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----------~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~   71 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----------MGQALRKLTPGFSGDPQEHPMWIPLMLDALQY   71 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----------HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----------hHHHHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence            46789999999999999999999999999888 4321           223333333222110    00  223334444


Q ss_pred             HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCC
Q 025970          102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFD  181 (245)
Q Consensus       102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~  181 (245)
                      .+..  .+..+|+|+..........+...+...+..+ ..|+|++|++++.+|+..|..                     
T Consensus        72 ~l~~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~~---------------------  127 (183)
T 2vli_A           72 ASRE--AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDGQ---------------------  127 (183)
T ss_dssp             HHHH--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC-----------------------
T ss_pred             HHHh--CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhccc---------------------
Confidence            3322  1345677866555544444444444444333 569999999999999998741                     


Q ss_pred             CCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          182 DVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                               ++ ...+.++..+.    ...++ . +   . . +||++ .+++++++.|.+.+.
T Consensus       128 ---------r~-~~~~~~~~~~~----~~~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~  170 (183)
T 2vli_A          128 ---------PQ-VNVGTVEDRLN----ELRGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVG  170 (183)
T ss_dssp             ------------CCHHHHHHHHH----HHTSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHT
T ss_pred             ---------cc-hhHHHHHHHHH----hhccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHH
Confidence                     11 12233333222    22222 1 2   2 3 78987 899999999998875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.62  E-value=1.7e-15  Score=118.80  Aligned_cols=124  Identities=14%  Similarity=0.155  Sum_probs=75.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .++++|+|+|+|||||||+++.|++.+|+++++.|.+...........+......+...   -...+...+...+.   .
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~---~   76 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT---AIMMLYHTAATILQ---S   76 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHH---HHHHHHHHHHHHHH---T
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHH---HHHHHHHHHHHHHh---C
Confidence            45789999999999999999999999999999997765443221000000000000000   00111122222222   2


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      +.++|+|++.........+.. +...+..|+++|+|++|++++.+|+..|.
T Consensus        77 g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~  126 (193)
T 2rhm_A           77 GQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRI  126 (193)
T ss_dssp             TCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence            457999998732222223322 23334567899999999999999998875

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.62  E-value=2.2e-15  Score=125.62  Aligned_cols=166  Identities=16%  Similarity=0.118  Sum_probs=102.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH--------
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLV--------   95 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~--------   95 (245)
                      .++++|+|+|++||||||+|+.|+ .+|++++++|.+.+....++......+.+.+...     ..+....+        
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~  151 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK  151 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence            457899999999999999999999 6899999999998876655554444443332211     11111110        


Q ss_pred             --------------HHHHHHHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           96 --------------VGIIDQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        96 --------------~~~l~~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                                    ...+...+...  .....+|+||.......          +...++.+|||++|++++.+|+..|.
T Consensus       152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~----------~~~~~d~vI~l~a~~ev~~~Rl~~R~  221 (281)
T 2f6r_A          152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG----------WQSMVHEVWTVVIPETEAVRRIVERD  221 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT----------GGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc----------hHHhCCEEEEEcCCHHHHHHHHHHcC
Confidence                          00111111110  11246888986322110          11246899999999999999998773


Q ss_pred             ccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 025970          160 IHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV  239 (245)
Q Consensus       160 ~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i  239 (245)
                                                       +.+.+.+..++...    .+...++...+  ++||++.+++++.+.|
T Consensus       222 ---------------------------------g~s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s~eel~~~I  262 (281)
T 2f6r_A          222 ---------------------------------GLSEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWESHVTQSQV  262 (281)
T ss_dssp             ---------------------------------CCCHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSCHHHHHHHH
T ss_pred             ---------------------------------CCCHHHHHHHHHHc----CChHhhHhhCC--EEEECCCCHHHHHHHH
Confidence                                             12344555555443    22233333333  5688888999999999


Q ss_pred             HHhhc
Q 025970          240 QKVLS  244 (245)
Q Consensus       240 ~~~l~  244 (245)
                      .+.+.
T Consensus       263 ~~~l~  267 (281)
T 2f6r_A          263 EKAWN  267 (281)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.62  E-value=1.4e-14  Score=115.16  Aligned_cols=161  Identities=14%  Similarity=0.093  Sum_probs=109.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHH-------------
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDL-------------   94 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~-------------   94 (245)
                      .|.|+|.+||||||+++.|++ +|++++++|.+.++...++.+....+.+.+..+     +.++...             
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~   89 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARR   89 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHH
Confidence            689999999999999999997 999999999999998887777666666665422     2333221             


Q ss_pred             -----HHHH----HHHHHcCCCCCCceEEcCCCCCHH-HHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970           95 -----VVGI----IDQAMKKPSCEKGFILDGFPRTVV-QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus        95 -----~~~~----l~~~l~~~~~~~~~iidg~p~~~~-~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                           +..+    +...+... ....+++|. |.-.+ ..  +.       ..+|.+|+++||+++.++|+..|.     
T Consensus        90 ~L~~i~HP~I~~~~~~~~~~~-~~~~vv~d~-pLL~E~~~--~~-------~~~D~vi~V~ap~e~r~~Rl~~Rd-----  153 (210)
T 4i1u_A           90 RLEAITHPLIRAETEREARDA-QGPYVIFVV-PLLVESRN--WK-------ARCDRVLVVDCPVDTQIARVMQRN-----  153 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC-CSSSEEEEC-TTCTTCHH--HH-------HHCSEEEEEECCHHHHHHHHHHHH-----
T ss_pred             HHHHHhhHHHHHHHHHHHHhc-CCCEEEEEE-ecccccCC--cc-------ccCCeEEEEECCHHHHHHHHHhcC-----
Confidence                 1112    22222221 123355664 54443 21  11       136999999999999999999873     


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhh
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVL  243 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l  243 (245)
                                                  +.+.+.+.+|+...    .+..+.+...+  ++|+++ ++++++..+|...+
T Consensus       154 ----------------------------g~s~eea~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~  199 (210)
T 4i1u_A          154 ----------------------------GFTREQVEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQVDALH  199 (210)
T ss_dssp             ----------------------------CCCHHHHHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHHHHHHH
T ss_pred             ----------------------------CCCHHHHHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHHHHHHH
Confidence                                        44667777777542    23445555444  567888 89999999998765


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      +
T Consensus       200 ~  200 (210)
T 4i1u_A          200 Q  200 (210)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.62  E-value=2.9e-15  Score=115.23  Aligned_cols=105  Identities=23%  Similarity=0.276  Sum_probs=66.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      .+|+|+|+|||||||+++.|++++|++++++|.++++...  ..    +.+++.. |..........++.....    ..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~l~~~~~----~~   77 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--LS----VREIFEELGEDNFRMFEKNLIDELKT----LK   77 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHTCHHHHHHHHHHHHHHHHT----CS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--CC----HHHHHHHhCHHHHHHHHHHHHHHHHh----cC
Confidence            4899999999999999999999999999999998877532  22    2233322 221111222222333221    12


Q ss_pred             ce-EEc-C--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          111 GF-ILD-G--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       111 ~~-iid-g--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                      .+ |+. |  ++.. ..       +    ..++.+|+|++|++++.+|+..|
T Consensus        78 ~~~Vi~~g~g~~~~-~~-------l----~~~~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           78 TPHVISTGGGIVMH-EN-------L----KGLGTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             SCCEEECCGGGGGC-GG-------G----TTSEEEEEEECCHHHHHHHHCC-
T ss_pred             CCEEEECCCCEech-hH-------H----hcCCEEEEEECCHHHHHHHHhcc
Confidence            33 443 2  2222 11       1    23689999999999999999887

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.62  E-value=2.1e-14  Score=114.14  Aligned_cols=176  Identities=16%  Similarity=0.153  Sum_probs=95.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcc--eeehHHHHHHHHHcCCchHHHHHHHHHcCC---CCCHHHH---------
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLC--HLATGDMLRSAVAAKTPLGIKAKEAMDKGE---LVSDDLV---------   95 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~---------   95 (245)
                      ++++|+|.|+|||||||+++.|++.++..  ++.++          .+.+..+.+++..+.   .......         
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~   72 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS   72 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999999763  44321          011222222222211   1111110         


Q ss_pred             ---HHHHHHHHcCCCCCCceEEcCCCCCHHHH--------HHHHHHHHhcCCCccEEEEEecCHHHHHHHHh-CCcccCC
Q 025970           96 ---VGIIDQAMKKPSCEKGFILDGFPRTVVQA--------EKLDEMLEKQGTKIDKVLNFAIDDSILEERIT-GRWIHPA  163 (245)
Q Consensus        96 ---~~~l~~~l~~~~~~~~~iidg~p~~~~~~--------~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~-~r~~~~~  163 (245)
                         ...+...+   ..+..+|+|++|.+....        ..+.. +......|+++|+|++|++++.+|+. .|..   
T Consensus        73 ~~~~~~i~~~l---~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~---  145 (213)
T 2plr_A           73 DRYERYILPML---KSGFIVISDRYIYTAYARDSVRGVDIDWVKK-LYSFAIKPDITFYIRVSPDIALERIKKSKRK---  145 (213)
T ss_dssp             HHHHHTHHHHH---HTTCEEEEESCHHHHHHHHHTTTCCHHHHHH-HTTTSCCCSEEEEEECCHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHH---hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHhccccc---
Confidence               00111112   123568899987653211        11222 22233458999999999999999998 6641   


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCC--CcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHH
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKD--DTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQK  241 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~--~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~  241 (245)
                      .++ ++              ++..+..+.+  +..+.+.+++..++..+      .... .+++||++.+++++++.|.+
T Consensus       146 ~~~-~~--------------~g~~~~~~~d~~e~~~~~~~r~~~~~~~~------~~~~-~~~~Id~~~~~e~v~~~I~~  203 (213)
T 2plr_A          146 IKP-QE--------------AGADIFPGLSPEEGFLKYQGLITEVYDKL------VKDE-NFIVIDGTKTPKEIQIQIRK  203 (213)
T ss_dssp             CCT-TT--------------TTTTTCTTSCHHHHHHHHHHHHHHHHHHH------TTTT-TCEEEETTSCHHHHHHHHHH
T ss_pred             ccc-cc--------------cccccccccchhhhHHHHHHHHHHHHHHH------HhhC-CEEEEECCCCHHHHHHHHHH
Confidence            011 10              0000111111  01123444444332222      1111 57899999999999999988


Q ss_pred             hhc
Q 025970          242 VLS  244 (245)
Q Consensus       242 ~l~  244 (245)
                      .+.
T Consensus       204 ~l~  206 (213)
T 2plr_A          204 FVG  206 (213)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.62  E-value=1.4e-15  Score=121.33  Aligned_cols=173  Identities=16%  Similarity=0.135  Sum_probs=95.8

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH---------
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI---------   98 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---------   98 (245)
                      ..+|++|+|+|+|||||||+++.|++.++..+++++.+ ++. ..+++.+..+..++..+..+++.....+         
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~   83 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQV   83 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999986555544211 110 0124556667777766544554322211         


Q ss_pred             --HHHHHcCCCCCCceEEcCCCCCH-H--------HHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcc
Q 025970           99 --IDQAMKKPSCEKGFILDGFPRTV-V--------QAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRS  167 (245)
Q Consensus        99 --l~~~l~~~~~~~~~iidg~p~~~-~--------~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~  167 (245)
                        +...+.   .+..+|+|.+.... .        ....+. .+......|+.+|+|++|++++.+|+..+. +      
T Consensus        84 ~~i~~~l~---~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~-~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~-~------  152 (215)
T 1nn5_A           84 PLIKEKLS---QGVTLVVDRYAFSGVAFTGAKENFSLDWCK-QPDVGLPKPDLVLFLQLQLADAAKRGAFGH-E------  152 (215)
T ss_dssp             HHHHHHHH---TTCEEEEESCHHHHHHHHHTSTTCCHHHHH-GGGTTSBCCSEEEEEECCHHHHHHC------C------
T ss_pred             HHHHHHHH---CCCEEEEeCCcccHHHHHhhcCCCCHHHHH-HHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c------
Confidence              112221   23457788532110 0        011111 111222468999999999999999986331 0      


Q ss_pred             ccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          168 YHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       168 y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                             +.+ . ..+..++.....      ++... ...+++||++.+++++++.|.+.+.
T Consensus       153 -----------------------~~~-~-~~~~~~~~~~~~------~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~  199 (215)
T 1nn5_A          153 -----------------------RYE-N-GAFQERALRCFH------QLMKDTTLNWKMVDASKSIEAVHEDIRVLSE  199 (215)
T ss_dssp             -----------------------TTC-S-HHHHHHHHHHHH------HHTTCTTSCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             -----------------------ccc-h-HHHHHHHHHHHH------HHHHhCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence                                   011 1 223333322111      11111 2357899999999999999988764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.60  E-value=2.7e-14  Score=117.69  Aligned_cols=163  Identities=17%  Similarity=0.117  Sum_probs=99.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH---hCccee--ehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE---YCLCHL--ATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK  104 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~---~~~~~i--~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~  104 (245)
                      ++++|+|+|+|||||||+++.|++.   +|+.++  +.|.+... +......+...   +       .......+...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~-l~~~~~~~e~~---~-------~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES-FPVWKEKYEEF---I-------KKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT-SSSCCGGGHHH---H-------HHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH-HhhhhHHHHHH---H-------HHHHHHHHHHHhh
Confidence            4679999999999999999999998   688777  77655322 11101111110   0       1112223333332


Q ss_pred             CCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCC
Q 025970          105 KPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVT  184 (245)
Q Consensus       105 ~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~  184 (245)
                         . ..+|+|+.+........+....... ..|+++|+|++|++++.+|+..|..                        
T Consensus        72 ---~-~~vIiD~~~~~~~~~~~l~~~a~~~-~~~~~vi~l~~~~e~~~~R~~~R~~------------------------  122 (260)
T 3a4m_A           72 ---N-YWVIVDDTNYYNSMRRDLINIAKKY-NKNYAIIYLKASLDVLIRRNIERGE------------------------  122 (260)
T ss_dssp             ---T-SEEEECSCCCSHHHHHHHHHHHHHT-TCEEEEEEEECCHHHHHHHHHHTTC------------------------
T ss_pred             ---C-CEEEEeCCcccHHHHHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHhCCC------------------------
Confidence               2 5789999777666666565544433 4578999999999999999988731                        


Q ss_pred             CCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC--ChhHHHHHHHHhhc
Q 025970          185 GEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK--PPKEVTVEVQKVLS  244 (245)
Q Consensus       185 ~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~--~~e~v~~~i~~~l~  244 (245)
                              ....+.++.....|..-.    ..|......++||++.  +++++++.|.+.+.
T Consensus       123 --------~~~~~~l~~~~~~~e~~~----~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~  172 (260)
T 3a4m_A          123 --------KIPNEVIKKMYEKFDEPG----KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK  172 (260)
T ss_dssp             --------SSCHHHHHHHHHHCCCTT----SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             --------CCCHHHHHHHHHHhcCcc----ccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence                    112344443333332111    1111123457888876  89999999987764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.60  E-value=1.3e-13  Score=106.64  Aligned_cols=161  Identities=16%  Similarity=0.179  Sum_probs=93.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH-------HHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD-------LVVGII   99 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-------~~~~~l   99 (245)
                      ...++.+|+|+|++||||||+++.|+..+|..+++.|++.+..         .+.. ...|..+.+.       .+...+
T Consensus         4 ~~~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~   73 (175)
T 1knq_A            4 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAA   73 (175)
T ss_dssp             CCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHH
Confidence            3456789999999999999999999999999999998763210         0000 0111111110       111122


Q ss_pred             HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCcc-EEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCC
Q 025970          100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKID-KVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVH  178 (245)
Q Consensus       100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~-~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~  178 (245)
                      ...+.   .+..+|+|...........+    ...  .++ .+|+|++|++++.+|+..|..+                 
T Consensus        74 ~~~~~---~~~~~vi~~~~~~~~~~~~l----~~~--~~~~~vv~l~~~~e~~~~R~~~R~~~-----------------  127 (175)
T 1knq_A           74 FAMQR---TNKVSLIVCSALKKHYRDLL----REG--NPNLSFIYLKGDFDVIESRLKARKGH-----------------  127 (175)
T ss_dssp             HHHHH---HCSEEEEECCCCSHHHHHHH----HTT--CTTEEEEEEECCHHHHHHHHHTSTTC-----------------
T ss_pred             HHHHh---cCCcEEEEeCchHHHHHHHH----Hhc--CCCEEEEEEECCHHHHHHHHHhccCC-----------------
Confidence            22211   13467887432222232222    222  234 7999999999999999988421                 


Q ss_pred             CCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          179 GFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                    ....+.+..++..+.    +.  +|.. ...+.||++.+++++.+.|.+.+.
T Consensus       128 --------------~~~~~~~~~~~~~~~----~~--~~~~-~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          128 --------------FFKTQMLVTQFETLQ----EP--GADE-TDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             --------------CCCHHHHHHHHHHCC----CC--CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             --------------CCchHHHHHHHHhhh----Cc--ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence                          111233333322211    10  1222 236789999999999999998875

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.59  E-value=1.7e-14  Score=114.28  Aligned_cols=162  Identities=18%  Similarity=0.216  Sum_probs=95.6

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH-------HHHHH
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD-------LVVGI   98 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-------~~~~~   98 (245)
                      |...++.+|+|+|++||||||+++.|+..+|..+++.+++......          .....|....+.       .+...
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHH
Confidence            3456778999999999999999999999999999998876321100          001112222211       11122


Q ss_pred             HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCC
Q 025970           99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVH  178 (245)
Q Consensus        99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~  178 (245)
                      +...+.   .+..+|+|...........+.    .. ..+..+|+|++|++++.+|+..|..+.                
T Consensus        94 ~~~~~~---~g~~viid~~~~~~~~~~~l~----~~-~~~~~vv~l~~~~e~l~~Rl~~R~~~~----------------  149 (200)
T 4eun_A           94 MDARAD---AGVSTIITCSALKRTYRDVLR----EG-PPSVDFLHLDGPAEVIKGRMSKREGHF----------------  149 (200)
T ss_dssp             HHHHHH---TTCCEEEEECCCCHHHHHHHT----TS-SSCCEEEEEECCHHHHHHHHTTCSCCS----------------
T ss_pred             HHHHHh---cCCCEEEEchhhhHHHHHHHH----Hh-CCceEEEEEeCCHHHHHHHHHhcccCC----------------
Confidence            222222   234677776544444433322    22 234589999999999999999885211                


Q ss_pred             CCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          179 GFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                     ...+.++..+..+       ..+|.. ...+.||++.+++++.+.|.+.|.
T Consensus       150 ---------------~~~~~l~~~~~~~-------~~~~~~-~~~~~Id~~~~~~e~~~~I~~~l~  192 (200)
T 4eun_A          150 ---------------MPASLLQSQLATL-------EALEPD-ESGIVLDLRQPPEQLIERALTWLD  192 (200)
T ss_dssp             ---------------SCGGGHHHHHHHC-------CCCCTT-SCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             ---------------CCHHHHHHHHHHh-------CCCCCC-CCeEEEECCCCHHHHHHHHHHHHH
Confidence                           1122232222221       112222 136789999999999999998875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.59  E-value=8.1e-15  Score=116.19  Aligned_cols=162  Identities=19%  Similarity=0.187  Sum_probs=96.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH-----------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLV-----------   95 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~-----------   95 (245)
                      ++|+|+|++||||||+++.|++ +|++++++|++++....++......+...+...     ..+....+           
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999 999999999988765433333223333322211     01111111           


Q ss_pred             ---HHHHHH--------HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970           96 ---VGIIDQ--------AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus        96 ---~~~l~~--------~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                         ..+...        .+........+|+|+.......          ....++.+|||++|++++.+|+..|.     
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~----------~~~~~~~~i~l~~~~e~~~~Rl~~R~-----  145 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG----------TYKNYDKLIVVYAPYEVCKERAIKRG-----  145 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT----------CGGGSSEEEEECCCHHHHHHHHHHTC-----
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC----------chhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence               111111        1111111156778874211110          01236899999999999999998762     


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                                   .+.+.+..++...    .+...++...+  ++||++.+++++.+.|.+.+.
T Consensus       146 -----------------------------~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~  190 (204)
T 2if2_A          146 -----------------------------MSEEDFERRWKKQ----MPIEEKVKYAD--YVIDNSGSIEETYKQVKKVYE  190 (204)
T ss_dssp             -----------------------------CCHHHHHHHHTTS----CCHHHHGGGCS--EECCCSSCHHHHHHHHHHHHH
T ss_pred             -----------------------------CCHHHHHHHHHhC----CChhHHHhcCC--EEEECCCCHHHHHHHHHHHHH
Confidence                                         1223444444332    12233333333  568888999999999988764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.59  E-value=3.6e-15  Score=125.26  Aligned_cols=125  Identities=17%  Similarity=0.138  Sum_probs=81.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCE  109 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~  109 (245)
                      |++|+|.|+|||||||+++.|++++ |+.+++.| .++..+...+. +.. ..+...+......++...+...+.....+
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            4689999999999999999999985 99999998 55554432111 000 00000000001122333444444221345


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .++|+|+.+....+...+.+.....+ .+..+|+|++|++++.+|+..|.
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYG-WKVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTT-CEEEEEECCCCHHHHHHHHHHCG
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEECCHHHHHHHHHhcc
Confidence            68999999988877777766554443 34589999999999999999885

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.58  E-value=3.6e-15  Score=119.86  Aligned_cols=177  Identities=13%  Similarity=0.039  Sum_probs=91.0

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHhCc-ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH-HHHHHHH
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL-CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVV-GIIDQAM  103 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~-~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~l~~~l  103 (245)
                      +...++++|+|.|++||||||+++.|++.++. ..+++-.+.++  ..+++.|..+++++.....+...... -....+.
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~   93 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRR   93 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            34567899999999999999999999998755 22211000011  23567788888887753224433222 1111221


Q ss_pred             cC--------CCCCCceEEcCCCC------------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970          104 KK--------PSCEKGFILDGFPR------------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA  163 (245)
Q Consensus       104 ~~--------~~~~~~~iidg~p~------------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~  163 (245)
                      ..        +..+..+|.|.|..            .......+..+...  ..||++|||++|++++.+|+ .+.    
T Consensus        94 ~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~--~~PDl~I~Ldv~~e~~~~Ri-~rd----  166 (223)
T 3ld9_A           94 EHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID--VYPDITFIIDVDINESLSRS-CKN----  166 (223)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS--SCCSEEEEEECC----------------
T ss_pred             HHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc--CCCCeEEEEeCCHHHHHHHh-ccC----
Confidence            11        11233456675422            22333333333322  68999999999999999998 331    


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                 |-+.....+..++...+..+   .+.+  .+.+++||++++++++ +.|.+.|
T Consensus       167 ---------------------------r~E~~~~e~~~rv~~~y~~l---a~~~--~~~~~vIDa~~sieeV-~~I~~~l  213 (223)
T 3ld9_A          167 ---------------------------GYEFADMEFYYRVRDGFYDI---AKKN--PHRCHVITDKSETYDI-DDINFVH  213 (223)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHH---HHHC--TTTEEEEESSCSSSCC-CHHHHHH
T ss_pred             ---------------------------ccccchHHHHHHHHHHHHHH---HHHC--CCCEEEEcCCCCHHHH-HHHHHHH
Confidence                                       11111122333333222211   1112  2469999999999999 8888776


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      .
T Consensus       214 ~  214 (223)
T 3ld9_A          214 L  214 (223)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.57  E-value=1.2e-14  Score=112.55  Aligned_cols=156  Identities=22%  Similarity=0.213  Sum_probs=91.1

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      +|+|.|+|||||||+++.|++.+|+++++.|.+++....  ...    ...+. .|..........++. .+.   ....
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~-~l~---~~~~   75 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKV----SEIFEQKRENFFREQEQKMAD-FFS---SCEK   75 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCH----HHHHHHHCHHHHHHHHHHHHH-HHT---TCCS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CCH----HHHHHHcCHHHHHHHHHHHHH-HHH---ccCC
Confidence            689999999999999999999999999999998876421  111    12221 121111111222222 222   2234


Q ss_pred             eEEc-CCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcccc
Q 025970          112 FILD-GFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQ  190 (245)
Q Consensus       112 ~iid-g~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~  190 (245)
                      +|++ |.+.... .. +    .    ..+.+|||++|++++.+|+..|...                            .
T Consensus        76 ~vi~~g~~~~~~-~~-l----~----~~~~~i~l~~~~e~~~~R~~~r~~~----------------------------~  117 (175)
T 1via_A           76 ACIATGGGFVNV-SN-L----E----KAGFCIYLKADFEYLKKRLDKDEIS----------------------------K  117 (175)
T ss_dssp             EEEECCTTGGGS-TT-G----G----GGCEEEEEECCHHHHTTCCCGGGTT----------------------------T
T ss_pred             EEEECCCCEehh-hH-H----h----cCCEEEEEeCCHHHHHHHHhcccCC----------------------------C
Confidence            5555 4332211 11 1    1    2368999999999999998776310                            0


Q ss_pred             CCCCc-HHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          191 RKDDT-AQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       191 ~~~~~-~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                      |+... .+.++..+.       ....+|... ..+.||++ .+++++++.|.+.+.
T Consensus       118 r~~~~~~~~i~~~~~-------~r~~~y~~~-~~~~Idt~~~~~eev~~~I~~~l~  165 (175)
T 1via_A          118 RPLFYDEIKAKKLYN-------ERLSKYEQK-ANFILNIENKNIDELLSEIKKVIK  165 (175)
T ss_dssp             SCTTCCHHHHHHHHH-------HHHHHHHHH-CSEEEECTTCCHHHHHHHHHHHHC
T ss_pred             CCCcccHHHHHHHHH-------HHHHHHHhc-CCEEEECCCCCHHHHHHHHHHHHH
Confidence            12211 333333222       222334321 24778888 799999999998875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.57  E-value=1.6e-13  Score=108.29  Aligned_cols=167  Identities=12%  Similarity=0.036  Sum_probs=91.1

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehH----HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH---HHHc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG----DMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID---QAMK  104 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~----~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~---~~l~  104 (245)
                      ++|+|.|++||||||+++.|++.++..++...    .+++.              ++..+...+.......+.   ..+.
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~r~~~~~   66 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQ--------------YYKDLKKTVFKMQIYMLTARSKQLK   66 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHH--------------HTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHH--------------HHhCccccchhHHHHHHHHHHHHHH
Confidence            57999999999999999999999998766421    11111              110000000000001111   1122


Q ss_pred             CCCCCCceEEcCCCCCHHH---------------HHHHHHHHHhc----------CCCccEEEEEecCHHHHHHHHhCCc
Q 025970          105 KPSCEKGFILDGFPRTVVQ---------------AEKLDEMLEKQ----------GTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       105 ~~~~~~~~iidg~p~~~~~---------------~~~l~~~~~~~----------~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .......+|+|.++....-               ...+..++...          +..|+.+|+|++|++++.+|+..|.
T Consensus        67 ~~~~~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  146 (205)
T 2jaq_A           67 QAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG  146 (205)
T ss_dssp             ------CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT
T ss_pred             HhhccCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            2112235889988764211               11111111111          2468999999999999999998763


Q ss_pred             ccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHH
Q 025970          160 IHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEV  239 (245)
Q Consensus       160 ~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i  239 (245)
                      .                          ++...  .. ..+..++..++.   .+.+.|......++||++.+++++++.|
T Consensus       147 r--------------------------~~~~~--~~-~~~~~~l~~~~~---~~~~~~~~~~~~~~Id~~~~~~~v~~~I  194 (205)
T 2jaq_A          147 R--------------------------SEELL--IG-EEYWETLNKNYE---EFYKQNVYDFPFFVVDAELDVKTQIELI  194 (205)
T ss_dssp             C--------------------------HHHHH--SC-HHHHHHHHHHHH---HHHHHHTTTSCEEEEETTSCHHHHHHHH
T ss_pred             C--------------------------hhhhc--Cc-HHHHHHHHHHHH---HHHHHccccCcEEEEECCCCHHHHHHHH
Confidence            1                          00000  01 123344443333   2334453234578899999999999999


Q ss_pred             HHhhc
Q 025970          240 QKVLS  244 (245)
Q Consensus       240 ~~~l~  244 (245)
                      .+.+.
T Consensus       195 ~~~l~  199 (205)
T 2jaq_A          195 MNKLN  199 (205)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.57  E-value=4.2e-14  Score=113.73  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=72.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHH----cCCchH--HHHHHHHH-----------------cC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA----AKTPLG--IKAKEAMD-----------------KG   87 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~----~~~~~~--~~i~~~l~-----------------~~   87 (245)
                      +++|+|+|++||||||+++.|++.+|++++++|++++....    .+..+.  ..+.....                 .+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            56899999999999999999999999999999999886542    233221  11111111                 11


Q ss_pred             CCCCHH-----------------HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHH
Q 025970           88 ELVSDD-----------------LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI  150 (245)
Q Consensus        88 ~~~~~~-----------------~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~  150 (245)
                      ..+++.                 .+...+...........++++||.....  .         ....++++|||++|+++
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~--~---------~~~~~d~~i~l~~~~e~  153 (227)
T 1cke_A           85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT--V---------VFPDAPVKIFLDASSEE  153 (227)
T ss_dssp             EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC--C---------CCTTCSEEEEEECCHHH
T ss_pred             eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc--e---------EecCCCEEEEEeCCHHH
Confidence            111111                 1222222222222335689999873221  0         11357899999999999


Q ss_pred             HHHHHh
Q 025970          151 LEERIT  156 (245)
Q Consensus       151 ~~~R~~  156 (245)
                      +.+|..
T Consensus       154 ~~~R~~  159 (227)
T 1cke_A          154 RAHRRM  159 (227)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999954

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.56  E-value=3e-14  Score=109.84  Aligned_cols=164  Identities=16%  Similarity=0.271  Sum_probs=86.1

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEK  110 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~  110 (245)
                      +++|+|+|++||||||+++.|+..++.++++.|.+++...  +...+.....   .|..........++.. +..   ..
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~---~~   74 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL---EGEEGFRDREEKVINE-LTE---KQ   74 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH---HHHHHHHHHHHHHHHH-HHT---SS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH---HhHHHHHHHHHHHHHH-HHh---CC
Confidence            4689999999999999999999999999999998877543  2222221110   0000000001112222 211   23


Q ss_pred             ceEEc---CCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          111 GFILD---GFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       111 ~~iid---g~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                      .+++.   +.+........+.        .+++++++++|++++.+|+..|..++                         
T Consensus        75 ~~v~~~~~~~~~~~~~~~~l~--------~~~~~i~l~~~~~~l~~R~~~r~~r~-------------------------  121 (173)
T 1kag_A           75 GIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDKKRP-------------------------  121 (173)
T ss_dssp             SEEEECCTTGGGSHHHHHHHH--------HHSEEEECCCCHHHHHSCC------C-------------------------
T ss_pred             CeEEECCCeEEecHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCCCCC-------------------------
Confidence            45553   2232322222222        13679999999999999998874211                         


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                      +....+...+.+...+..    ..+   +|.... -++||++ .+++++++.|.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~----r~~---~~~~~a-~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A          122 LLHVETPPREVLEALANE----RNP---LYEEIA-DVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             CSSSSCCCHHHHHHHHHH----HHH---HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred             CCCCCCchHHHHHHHHHH----HHH---HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence            111111114444443332    222   232212 3678877 799999999998875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.56  E-value=4.7e-14  Score=111.38  Aligned_cols=164  Identities=15%  Similarity=0.093  Sum_probs=95.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc---CCCCCHHHHHH-------
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK---GELVSDDLVVG-------   97 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~---~~~~~~~~~~~-------   97 (245)
                      +.++++|+|+|++||||||+++.|++. |+++++.|++++... .+..  ..+...+..   ...+....+..       
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~   80 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE   80 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence            356789999999999999999999998 999999999987765 2221  222222210   11222222111       


Q ss_pred             -----------HH-HHHHcCC-CC-CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCC
Q 025970           98 -----------II-DQAMKKP-SC-EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPA  163 (245)
Q Consensus        98 -----------~l-~~~l~~~-~~-~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~  163 (245)
                                 .+ ...+... .. ...+|+|+ |.....         .+...++.+|+|++|++++.+|+..|.    
T Consensus        81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~---------~~~~~~d~~i~l~~~~e~~~~R~~~R~----  146 (203)
T 1uf9_A           81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK---------GWEGRLHGTLLVAAPLEERVRRVMARS----  146 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT---------TCGGGSSEEEEECCCHHHHHHHHHTTT----
T ss_pred             HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc---------CchhhCCEEEEEECCHHHHHHHHHHcC----
Confidence                       11 0111111 12 34567775 322110         011246899999999999999998763    


Q ss_pred             CCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          164 SGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       164 ~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                   ..+.+.+..++...    .+...++...+  ++||++.+++++++.|.+.+
T Consensus       147 -----------------------------~~~~~~~~~~i~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~  191 (203)
T 1uf9_A          147 -----------------------------GLSREEVLARERAQ----MPEEEKRKRAT--WVLENTGSLEDLERALKAVL  191 (203)
T ss_dssp             -----------------------------CCTTHHHHHHHTTS----CCHHHHHHHCS--EEECCSSHHHHHHHHHHHHH
T ss_pred             -----------------------------CCCHHHHHHHHHHC----CChhHHHHhCC--EEEECCCCHHHHHHHHHHHH
Confidence                                         11222344444331    11222233333  46888889999999998876


Q ss_pred             c
Q 025970          244 S  244 (245)
Q Consensus       244 ~  244 (245)
                      .
T Consensus       192 ~  192 (203)
T 1uf9_A          192 A  192 (203)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.56  E-value=2.3e-14  Score=114.67  Aligned_cols=177  Identities=15%  Similarity=0.076  Sum_probs=104.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC-CCCHHHHHH-HHHHHHcC-
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE-LVSDDLVVG-IIDQAMKK-  105 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~-~l~~~l~~-  105 (245)
                      .++++|+|.|++||||||+++.|++.++..+.-+    +. ...++++|+.+++++.... ...+....- ....+... 
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~----~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~   77 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL----KF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV   77 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE----ES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEE----Ee-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999998632211    11 1236788999999888654 233322111 11222221 


Q ss_pred             ------CCCCCceEEcCCCCCH-HHHH-------HHHHH--HHhcCCCccEEEEE-ecCHHHHHHHHhCCcccCCCCccc
Q 025970          106 ------PSCEKGFILDGFPRTV-VQAE-------KLDEM--LEKQGTKIDKVLNF-AIDDSILEERITGRWIHPASGRSY  168 (245)
Q Consensus       106 ------~~~~~~~iidg~p~~~-~~~~-------~l~~~--~~~~~~~~~~vi~L-~~~~e~~~~R~~~r~~~~~~~~~y  168 (245)
                            +..+..+|.|.|..+. ....       .+.++  +...+..||++||| ++|++++.+|+..+.      +  
T Consensus        78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~------d--  149 (216)
T 3tmk_A           78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD------E--  149 (216)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC------C--
T ss_pred             HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc------c--
Confidence                  1123446667653321 1110       12221  11234689999999 999999998865321      0  


Q ss_pred             cccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHH-HHHHHHhcCcEEEEe-CCCChhHHHHHHHHhhc
Q 025970          169 HTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP-VIDYYAKKGVLAQLH-AEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       169 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~-l~~~~~~~~~~~~id-~~~~~e~v~~~i~~~l~  244 (245)
                                            |-+ . ..+..++...+..+.. ...  .....+++|| +++++++|++.|.+.|.
T Consensus       150 ----------------------r~E-~-~~f~~rvr~~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~~~I~~~i~  201 (216)
T 3tmk_A          150 ----------------------RYE-T-VKFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVEALIWQIVE  201 (216)
T ss_dssp             ----------------------TTC-C-HHHHHHHHHHHHHHHHHHHH--TTCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ----------------------ccc-H-HHHHHHHHHHHHHHHHhccc--cCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                  111 1 2444444433333322 111  1235799999 99999999999988764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.55  E-value=2.1e-14  Score=117.49  Aligned_cols=183  Identities=17%  Similarity=0.242  Sum_probs=103.0

Q ss_pred             HHHHhccCCCC---CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHH
Q 025970           20 LLRRFKCSSKP---DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK-GELVSDDLV   95 (245)
Q Consensus        20 ~~~~~~~~~~~---~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~   95 (245)
                      +++.++....+   +.+|+|+|++||||||+++.|++.+|+.++++|.+++.... +..    +..++.. |........
T Consensus        34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~----i~~i~~~~ge~~fr~~e  108 (250)
T 3nwj_A           34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTS----VAEIFEHFGESVFREKE  108 (250)
T ss_dssp             HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSC----HHHHHHHHCHHHHHHHH
T ss_pred             hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Ccc----HHHHHHHhCcHHHHHHH
Confidence            45556555555   77999999999999999999999999999999998876531 222    2222221 221111222


Q ss_pred             HHHHHHHHcCCCCCCceEEcC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCC
Q 025970           96 VGIIDQAMKKPSCEKGFILDG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFA  173 (245)
Q Consensus        96 ~~~l~~~l~~~~~~~~~iidg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~  173 (245)
                      ...+.......  ...+|.+|  .+........+.         .+.+|||++|++++.+|+..+....           
T Consensus       109 ~~~l~~l~~~~--~~~Via~GgG~v~~~~~~~~l~---------~~~vV~L~a~~e~l~~Rl~~~~~~~-----------  166 (250)
T 3nwj_A          109 TEALKKLSLMY--HQVVVSTGGGAVIRPINWKYMH---------KGISIWLDVPLEALAHRIAAVGTGS-----------  166 (250)
T ss_dssp             HHHHHHHHHHC--SSEEEECCGGGGGSHHHHHHHT---------TSEEEEEECCHHHHHHHHHC----------------
T ss_pred             HHHHHHHHhhc--CCcEEecCCCeecCHHHHHHHh---------CCcEEEEECCHHHHHHHHhhcCCCC-----------
Confidence            22232222210  22344443  344443433221         2689999999999999998632100           


Q ss_pred             CCCCCCCCCCCCCcccc--CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEE----------eC-CCChhHHHHHHH
Q 025970          174 PPKVHGFDDVTGEPLIQ--RKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQL----------HA-EKPPKEVTVEVQ  240 (245)
Q Consensus       174 ~p~~~~~~~~~~~~l~~--~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~i----------d~-~~~~e~v~~~i~  240 (245)
                                  +++..  ++++..+....++........+   +|...+.++.+          |. +.+++++++.|.
T Consensus       167 ------------Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~  231 (250)
T 3nwj_A          167 ------------RPLLHDDESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAF  231 (250)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHH
T ss_pred             ------------CCcccCCCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHH
Confidence                        11111  1222223333444444444444   45555545533          43 579999999998


Q ss_pred             Hhhc
Q 025970          241 KVLS  244 (245)
Q Consensus       241 ~~l~  244 (245)
                      +.+.
T Consensus       232 ~~i~  235 (250)
T 3nwj_A          232 EQVQ  235 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.53  E-value=7.9e-14  Score=108.32  Aligned_cols=110  Identities=23%  Similarity=0.290  Sum_probs=70.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .++++|+|+|+|||||||+++.|++.+|+.+++++++++.. ......+...     .........+...+...+..   
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---   79 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMRE---   79 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHHH---
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHhc---
Confidence            35668999999999999999999999999999999988764 1000000000     00112233333444333332   


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                       .++|++.........           ..++.+|||++|++++.+|+..|.
T Consensus        80 -g~~vv~~~~~~~~~~-----------~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           80 -GGVIVDYHGCDFFPE-----------RWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             -CCEEEECSCCTTSCG-----------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             -CCEEEEechhhhcch-----------hcCCEEEEEECCHHHHHHHHHHcC
Confidence             367777543221000           126899999999999999999884

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.52  E-value=2.7e-13  Score=107.39  Aligned_cols=163  Identities=13%  Similarity=0.092  Sum_probs=96.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc----CCch--HHHHHHHHH-----------------cCCC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA----KTPL--GIKAKEAMD-----------------KGEL   89 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~----~~~~--~~~i~~~l~-----------------~~~~   89 (245)
                      +|+|+|++||||||+++.|++.+|+++++.|.+.+.....    +...  ...+...+.                 .|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            8999999999999999999999999999999998775421    2110  011111111                 1211


Q ss_pred             CCH----H-------------HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHH
Q 025970           90 VSD----D-------------LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE  152 (245)
Q Consensus        90 ~~~----~-------------~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~  152 (245)
                      +..    .             .+...+...+....  .++|++|.....           .....++++|||++|++++.
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~~-----------~~~~~~d~~i~l~a~~e~~~  150 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMGT-----------AVFPEAAHKFYLTASPEVRA  150 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCCC-----------CCCTTCSEEEEEECCHHHHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEccceeE-----------EEecCCcEEEEEECCHHHHH
Confidence            110    0             11122222222222  578888763320           01134689999999999999


Q ss_pred             HHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCC-C
Q 025970          153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEK-P  231 (245)
Q Consensus       153 ~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~-~  231 (245)
                      +|+..|.                                 ..+.+.+..++.........   ++......+.||++. +
T Consensus       151 ~R~~~r~---------------------------------~~~~~~~~~~~~~R~~~~~~---~~~~~ad~~~Id~~~~~  194 (208)
T 3ake_A          151 WRRARER---------------------------------PQAYEEVLRDLLRRDERDKA---QSAPAPDALVLDTGGMT  194 (208)
T ss_dssp             HHHHHTS---------------------------------SSCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSC
T ss_pred             HHHHhhc---------------------------------ccCHHHHHHHHHHHHHHHhh---cccCCCCEEEEECCCCC
Confidence            9998763                                 12234454444432111111   001122347889885 9


Q ss_pred             hhHHHHHHHHhhc
Q 025970          232 PKEVTVEVQKVLS  244 (245)
Q Consensus       232 ~e~v~~~i~~~l~  244 (245)
                      ++++.+.|.+.++
T Consensus       195 ~ee~~~~I~~~~~  207 (208)
T 3ake_A          195 LDEVVAWVLAHIR  207 (208)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.52  E-value=7.1e-15  Score=120.60  Aligned_cols=171  Identities=14%  Similarity=0.110  Sum_probs=97.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc----------eeehHHHHHHHHHcCCchHHHHHHHHHcCC-------C
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC----------HLATGDMLRSAVAAKTPLGIKAKEAMDKGE-------L   89 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~----------~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-------~   89 (245)
                      ...++++|+|+|++||||||+|+.|++.+|++          ++++|++++..     ..+ .+. ....|.       .
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~-----~~~-~~~-~~~~g~~~f~~~~~   90 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL-----TSE-QKA-KALKGQFNFDHPDA   90 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC-----CHH-HHH-HHHTTCSCTTSGGG
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc-----Chh-hhh-hhccCCCCCCCcch
Confidence            44567899999999999999999999999987          79999886521     011 111 111121       1


Q ss_pred             CCHHHHHHHHHHHHcC---------------------CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCH
Q 025970           90 VSDDLVVGIIDQAMKK---------------------PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDD  148 (245)
Q Consensus        90 ~~~~~~~~~l~~~l~~---------------------~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~  148 (245)
                      .....+...+......                     ......+|+||.+.....  .+..       .++.+|||++|+
T Consensus        91 ~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~-------~~d~vi~l~~~~  161 (252)
T 1uj2_A           91 FDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD-------LFQMKLFVDTDA  161 (252)
T ss_dssp             BCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH-------HCSEEEEEECCH
T ss_pred             hhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH-------hcCeeEEEeCCH
Confidence            1122233333332211                     012356889996542111  1111       247999999999


Q ss_pred             HHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHH----HHHhcCcEE
Q 025970          149 SILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVID----YYAKKGVLA  224 (245)
Q Consensus       149 e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~----~~~~~~~~~  224 (245)
                      +++++|+..|...                            .+ +.+.+.+..++.....  .....    .....+.++
T Consensus       162 e~~~~R~~~R~~~----------------------------~r-g~~~e~i~~~~~~~~~--~~~~~~i~~~~~~ad~vI  210 (252)
T 1uj2_A          162 DTRLSRRVLRDIS----------------------------ER-GRDLEQILSQYITFVK--PAFEEFCLPTKKYADVII  210 (252)
T ss_dssp             HHHHHHHHHHHHH----------------------------HS-CCCHHHHHHHHHHTHH--HHHHHHTGGGGGGCSEEE
T ss_pred             HHHHHHHHHHHHh----------------------------hh-CCCHHHHHHHHHHhcc--HHHHHHhhhhhhcCcEEE
Confidence            9999999876310                            01 2244555544433111  11111    122233332


Q ss_pred             --EEeCCCChhHHHHHHHHhhc
Q 025970          225 --QLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       225 --~id~~~~~e~v~~~i~~~l~  244 (245)
                        .||++.+++++++.|.+.+.
T Consensus       211 ~~~id~~~s~e~v~~~I~~~l~  232 (252)
T 1uj2_A          211 PRGADNLVAINLIVQHIQDILN  232 (252)
T ss_dssp             ETGGGCHHHHHHHHHHHHHHHH
T ss_pred             ecCCCChhHHHHHHHHHHHHHc
Confidence              24888899999999988765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.48  E-value=1.5e-13  Score=111.49  Aligned_cols=43  Identities=30%  Similarity=0.512  Sum_probs=38.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA   69 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~   69 (245)
                      ++.++.+|+|+|++||||||+++.|++.+|+++++.|.+++..
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~   54 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   54 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence            4567889999999999999999999999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.48  E-value=2.2e-14  Score=114.03  Aligned_cols=170  Identities=13%  Similarity=0.104  Sum_probs=98.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchHHHHHHHHHcC---CCCCHHHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG---ELVSDDLVVGIIDQA  102 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~l~~~  102 (245)
                      ...++.+|+|+|++||||||+++.|++.+ ++.+++.|+++......  ..+.   ..+...   ..+....+...+...
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~~~i~~~   91 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETDK---NGFLQYDVLEALNMEKMMSAISCW   91 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBCT---TSCBCCSSGGGBCHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hccc---cCCChhHHHHHhHHHHHHHHHHHH
Confidence            34567899999999999999999999988 89999998876431100  0000   000000   001111222222221


Q ss_pred             HcC------------CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccc
Q 025970          103 MKK------------PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHT  170 (245)
Q Consensus       103 l~~------------~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~  170 (245)
                      +..            ......+|+||.+...  ...       ....|+.+|++++|++++.+|+..|....        
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~-------~~~~~d~~i~l~~~~~~~~~R~~~R~~~~--------  154 (207)
T 2qt1_A           92 MESARHSVVSTDQESAEEIPILIIEGFLLFN--YKP-------LDTIWNRSYFLTIPYEECKRRRSTRVYQP--------  154 (207)
T ss_dssp             HHHHTTSSCCC-----CCCCEEEEECTTCTT--CGG-------GTTTCSEEEEEECCHHHHHHHHHHSCCSS--------
T ss_pred             HhCCCCCCcCCCeeecCCCCEEEEeehHHcC--cHH-------HHHhcCeeEEEECCHHHHHHHHHHcCCCc--------
Confidence            111            0113468899964331  111       11457899999999999999997764211        


Q ss_pred             cCCCCCCCCCCCCCCCccccCCCCcHHHHH-HHHHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          171 KFAPPKVHGFDDVTGEPLIQRKDDTAQVLK-SRLEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       171 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~-~rl~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                            +...+.+. +....|    ....+++.. .+.++.||++.+++++++.|.+.+.
T Consensus       155 ----------------------e~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~  204 (207)
T 2qt1_A          155 ----------------------PDSPGYFDGHVWPMY----LKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI  204 (207)
T ss_dssp             ----------------------CCCTTHHHHTHHHHH----HHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred             ----------------------cchHHHHHHHHhHHH----HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence                                  00111122 112222    223344443 3567889999999999999998875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.45  E-value=2.7e-13  Score=108.55  Aligned_cols=39  Identities=28%  Similarity=0.445  Sum_probs=36.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA   69 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~   69 (245)
                      |++|+|+|++||||||+++.|++.+|+++++.|.+++..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~   41 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL   41 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence            578999999999999999999999999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.44  E-value=8.5e-13  Score=103.03  Aligned_cols=116  Identities=16%  Similarity=0.060  Sum_probs=66.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH--H
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI--I   99 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~--l   99 (245)
                      ...++++|+|+|+|||||||+++.|++.++     +.+++.|.+ +..+.....+...-.          ..++..+  +
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~   77 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAGFTREER----------LRHLKRIAWI   77 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCCCCHHHH----------HHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccCCChhhH----------HHHHHHHHHH
Confidence            345688999999999999999999999885     356676544 332111100000000          0011111  1


Q ss_pred             HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970          100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT  156 (245)
Q Consensus       100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~  156 (245)
                      ...+.  ..+..+|+|+..........+..++...+ .|+.+|||++|++++.+|+.
T Consensus        78 ~~~~~--~~g~~vi~d~~~~~~~~r~~~~~~~~~~~-~~~~~v~L~~~~e~~~~R~~  131 (186)
T 2yvu_A           78 ARLLA--RNGVIVICSFVSPYKQARNMVRRIVEEEG-IPFLEIYVKASLEEVIRRDP  131 (186)
T ss_dssp             HHHHH--TTTCEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCH
T ss_pred             HHHHH--hCCCEEEEeCccccHHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHhhh
Confidence            11111  12234556775544444444444444443 57899999999999999974

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.43  E-value=1.8e-12  Score=101.92  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA   72 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~   72 (245)
                      .-++|.|+|++||||||+++.|++.+|++++++|+++++...+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~   53 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE   53 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence            4578999999999999999999999999999999999887664

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.43  E-value=1.4e-12  Score=103.40  Aligned_cols=166  Identities=11%  Similarity=0.062  Sum_probs=93.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCC-----------------CHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV-----------------SDD   93 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~-----------------~~~   93 (245)
                      .++|.|.|++||||||+++.||+++|+++++ +++++..... .  |-.....-..+...                 .+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~--g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   81 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-G--RYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQD   81 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC------------------------------------CH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-c--CCCHHHHHHHhhhchhHHHHHhccccccccccHH
Confidence            4589999999999999999999999999999 7787653211 1  11000000001100                 011


Q ss_pred             HHHHHHHHHHcCCC--CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccccc
Q 025970           94 LVVGIIDQAMKKPS--CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTK  171 (245)
Q Consensus        94 ~~~~~l~~~l~~~~--~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~  171 (245)
                      + .......+..+.  ...++|++|-.  ...      ++..  ....+.|||++|++++.+|+..+.            
T Consensus        82 ~-~~~~~~~i~~la~~~~~~~Vi~Gr~--g~~------vl~~--~~~~~~V~L~A~~e~r~~R~~~~~------------  138 (201)
T 3fdi_A           82 I-AIRQFNFIRKKANEEKESFVIVGRC--AEE------ILSD--NPNMISAFILGDKDTKTKRVMERE------------  138 (201)
T ss_dssp             H-HHHHHHHHHHHHHTSCCCEEEESTT--HHH------HTTT--CTTEEEEEEEECHHHHHHHHHHHH------------
T ss_pred             H-HHHHHHHHHHHHhhcCCCEEEEECC--cch------hcCC--CCCeEEEEEECCHHHHHHHHHHHh------------
Confidence            1 122222222222  23467887642  111      1111  112589999999999999998652            


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhc------CcEEEEeCC-CChhHHHHHHHHhhc
Q 025970          172 FAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKK------GVLAQLHAE-KPPKEVTVEVQKVLS  244 (245)
Q Consensus       172 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~------~~~~~id~~-~~~e~v~~~i~~~l~  244 (245)
                                           +.+.+.+..++........+..+.|...      ..-+.||++ .+++++++.|.+.++
T Consensus       139 ---------------------~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~  197 (201)
T 3fdi_A          139 ---------------------GVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID  197 (201)
T ss_dssp             ---------------------TCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred             ---------------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence                                 1234455555555444455544444110      112556664 699999999988775

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.43  E-value=7.3e-12  Score=99.24  Aligned_cols=169  Identities=15%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCc-ceeehHHHHHHHHH---cCCc----hHHHHHHHHHcCCCCCH-------
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL-CHLATGDMLRSAVA---AKTP----LGIKAKEAMDKGELVSD-------   92 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~-~~i~~~~li~~~~~---~~~~----~~~~i~~~l~~~~~~~~-------   92 (245)
                      ..++++|+|+|+|||||||+++.|++.++- ...+.....|+.-.   .+..    -...+...+..+..+..       
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF   88 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence            356779999999999999999999998842 11111111000000   0000    00111111222221110       


Q ss_pred             -HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCC-ccEEEEEe-cCHHHHHHHHhCCcccCCCCcccc
Q 025970           93 -DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTK-IDKVLNFA-IDDSILEERITGRWIHPASGRSYH  169 (245)
Q Consensus        93 -~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~-~~~vi~L~-~~~e~~~~R~~~r~~~~~~~~~y~  169 (245)
                       ......+...+.   .+..+|+|+.+....+   +.    ..... ...+|||+ +|++++.+|+..|.          
T Consensus        89 ~~~~~~~i~~~l~---~g~~vi~d~~~~~~~~---l~----~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~----------  148 (204)
T 2qor_A           89 YGTLKSEYDLAVG---EGKICLFEMNINGVKQ---LK----ESKHIQDGIYIFVKPPSIDILLGRLKNRN----------  148 (204)
T ss_dssp             EEEEHHHHHHHHH---TTCEEEEECCHHHHHH---HH----HCSSCSCCEEEEEECSCHHHHHHHHHTCT----------
T ss_pred             ecCCHHHHHHHHH---cCCeEEEEECHHHHHH---HH----HhcCCCCeEEEEEcCCCHHHHHHHHHHcC----------
Confidence             000112222332   2457889875533322   21    11110 13789998 99999999998874          


Q ss_pred             ccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          170 TKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       170 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                             .++.+.+++|+...+......  +....+ ++.++ + +++++++.|.+.|.
T Consensus       149 -----------------------~~~~~~i~~rl~~~~~~~~~~--~~~~~d-~vi~n-~-~~e~~~~~i~~~i~  195 (204)
T 2qor_A          149 -----------------------TEKPEEINKRMQELTREMDEA--DKVGFN-YFIVN-D-DLARTYAELREYLL  195 (204)
T ss_dssp             -----------------------TSCHHHHHHHHHHHHHHHHHH--HHHTCS-EEEEC-S-SHHHHHHHHHHHHH
T ss_pred             -----------------------CCCHHHHHHHHHHHHHHHHHh--hhccCc-EEEEC-c-CHHHHHHHHHHHHH
Confidence                                   234577888877665433221  222223 44444 4 89999999988764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.41  E-value=2.1e-13  Score=112.46  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=28.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh-Cccee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHL   60 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i   60 (245)
                      .++++|+|.|++||||||+++.|++.+ ++.++
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i   54 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV   54 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            567899999999999999999999998 66665

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.41  E-value=4e-13  Score=107.12  Aligned_cols=114  Identities=11%  Similarity=0.101  Sum_probs=65.8

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC------cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH---H
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC------LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVV---G   97 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~------~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~   97 (245)
                      ...++++|+|.|++||||||+++.|++.++      +.+++.+.+ +..+.....+...-.          ...+.   .
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r----------~~~~~~~~~   89 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADR----------NENIRRIAE   89 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHH----------HHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHH----------HHHHHHHHH
Confidence            345678999999999999999999999886      777876544 322211100100000          01111   1


Q ss_pred             HHHHHHcCCCCCCceEEcCCCCC-HHHHHHHHHHHHh-----cCCCccEEEEEecCHHHHHHHH
Q 025970           98 IIDQAMKKPSCEKGFILDGFPRT-VVQAEKLDEMLEK-----QGTKIDKVLNFAIDDSILEERI  155 (245)
Q Consensus        98 ~l~~~l~~~~~~~~~iidg~p~~-~~~~~~l~~~~~~-----~~~~~~~vi~L~~~~e~~~~R~  155 (245)
                      .+...+.   .+..+|+| ++.. ......+..+...     ....|+++|||++|++++.+|+
T Consensus        90 ~~~~~l~---~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           90 VAKLFAD---SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHHHHHH---TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHHHHHH---CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            1222222   23457778 5432 2233334443321     1135789999999999999995

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.39  E-value=9.9e-12  Score=101.83  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=37.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV   70 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~   70 (245)
                      .++.+|+|+|++||||||+++.|++++|+.+++.+.+++...
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~   66 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLA   66 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence            456799999999999999999999999999999999986643

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.39  E-value=8.6e-12  Score=100.27  Aligned_cols=173  Identities=15%  Similarity=0.129  Sum_probs=95.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCC-c------hHHHHHH-H---HHcC------------
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKT-P------LGIKAKE-A---MDKG------------   87 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~-~------~~~~i~~-~---l~~~------------   87 (245)
                      .++|.|.|++||||||+++.|++++|+++++ .++++....... .      .+..... +   +..+            
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~   92 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN   92 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence            5799999999999999999999999999999 566666544311 0      0111000 0   0000            


Q ss_pred             -CCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCc
Q 025970           88 -ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGR  166 (245)
Q Consensus        88 -~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~  166 (245)
                       ....++.+.......+..+....++|+.|..-..    .+. .+..  ..-.+.|||++|.+++.+|+..+.       
T Consensus        93 ~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~----vl~-~~~~--~~~~~~VfL~A~~e~r~~Ri~~~~-------  158 (223)
T 3hdt_A           93 DKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGY----VLD-QDED--IERLIRIFVYTDKVKKVQRVMEVD-------  158 (223)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHSCEEEESTTHHH----HHH-HCTT--CCEEEEEEEECCHHHHHHHHHHHH-------
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcch----hcc-cccC--CCCeEEEEEECCHHHHHHHHHHhc-------
Confidence             0001111112222222222222456776542111    010 0011  122589999999999999998652       


Q ss_pred             cccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh------cCcEEEEeCC-CChhHHHHHH
Q 025970          167 SYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK------KGVLAQLHAE-KPPKEVTVEV  239 (245)
Q Consensus       167 ~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~------~~~~~~id~~-~~~e~v~~~i  239 (245)
                                                +-+.+...+++....+...+...+|..      ...-+.||++ .+++++++.|
T Consensus       159 --------------------------~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I  212 (223)
T 3hdt_A          159 --------------------------CIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELI  212 (223)
T ss_dssp             --------------------------TCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHH
T ss_pred             --------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHH
Confidence                                      112345556666555556665554421      1112567764 6999999999


Q ss_pred             HHhhc
Q 025970          240 QKVLS  244 (245)
Q Consensus       240 ~~~l~  244 (245)
                      .+.++
T Consensus       213 ~~~i~  217 (223)
T 3hdt_A          213 KAYIR  217 (223)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.37  E-value=5.9e-11  Score=99.07  Aligned_cols=145  Identities=17%  Similarity=0.185  Sum_probs=86.8

Q ss_pred             ccCCCChhhHHHHHHHHhcc---CCCCCcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHH
Q 025970            7 ALEDVPSVDMMTELLRRFKC---SSKPDKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAK   81 (245)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~   81 (245)
                      .+++........++...+..   ...+|.+|+|.|+|||||||+++.|++.+  ++.+||.|.+ +....   .....+.
T Consensus         6 ~~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~---~~~~~~~   81 (287)
T 1gvn_B            6 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHP---NFDELVK   81 (287)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTST---THHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhch---hhHHHHH
Confidence            34444455566666666553   33468899999999999999999999998  7889998655 22110   0000111


Q ss_pred             HHHHcC----CCCCHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHH----HH
Q 025970           82 EAMDKG----ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL----EE  153 (245)
Q Consensus        82 ~~l~~~----~~~~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~----~~  153 (245)
                      .+....    ......+....+...+.   .+..+|+|+......+...+...+...|. +..+++|.+|++++    .+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~~~v~~~l~---~g~~vIld~~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~p~~~~~l~~~~  157 (287)
T 1gvn_B           82 LYEKDVVKHVTPYSNRMTEAIISRLSD---QGYNLVIEGTGRTTDVPIQTATMLQAKGY-ETKMYVMAVPKINSYLGTIE  157 (287)
T ss_dssp             HHGGGCHHHHHHHHHHHHHHHHHHHHH---HTCCEEECCCCCCSHHHHHHHHHHHTTTC-EEEEEEECCCHHHHHHHHHH
T ss_pred             HccchhhhhhhHHHHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHhCCC-cEEEEEEECCHHHHHHHHHH
Confidence            110000    00001112223333332   24579999988887666555555554443 33578999999999    88


Q ss_pred             HHhCCc
Q 025970          154 RITGRW  159 (245)
Q Consensus       154 R~~~r~  159 (245)
                      |+..|.
T Consensus       158 Rl~~R~  163 (287)
T 1gvn_B          158 RYETMY  163 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987664

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.35  E-value=2e-11  Score=94.31  Aligned_cols=120  Identities=14%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHHHHHcC--CchHHHHHHHHHcCCC-CCH---HHH---HHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRSAVAAK--TPLGIKAKEAMDKGEL-VSD---DLV---VGII   99 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~~~~~~--~~~~~~i~~~l~~~~~-~~~---~~~---~~~l   99 (245)
                      +++|+|+|+|||||||+++.|++.++..++  +.|.++.......  ...+..+.   ..+.. ...   ...   ...+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc---CCCccccchhHHHHHHHHHHHH
Confidence            568999999999999999999999976554  5776654321100  00000000   00000 001   111   1112


Q ss_pred             HHHHcCCCCCCceEEcCCCC-CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          100 DQAMKKPSCEKGFILDGFPR-TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       100 ~~~l~~~~~~~~~iidg~p~-~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .....   .+..+|+++... .......+.+.+.   ..+..+|+|++|.+++.+|+..|.
T Consensus        80 ~~~~~---~g~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~l~~R~~~r~  134 (178)
T 1qhx_A           80 VAMAR---AGARIIIDDVFLGGAAAQERWRSFVG---DLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHH---TTCEEEEEECCTTTHHHHHHHHHHHT---TCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHh---cCCeEEEEeccccChHHHHHHHHHhc---CCcEEEEEEECCHHHHHHHHHhhC
Confidence            22221   234588888543 2232333333332   223468899999999999998874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.34  E-value=1.7e-12  Score=104.91  Aligned_cols=80  Identities=16%  Similarity=0.108  Sum_probs=40.0

Q ss_pred             cCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHH
Q 025970          134 QGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPV  213 (245)
Q Consensus       134 ~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l  213 (245)
                      .+..||++|||++|++++++|+..|....                           .+ ... ..+.+++..++..+.  
T Consensus       143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~---------------------------e~-~~~-~~~~~rv~~~~~~~~--  191 (230)
T 2vp4_A          143 IHVQADLIIYLRTSPEVAYERIRQRARSE---------------------------ES-CVP-LKYLQELHELHEDWL--  191 (230)
T ss_dssp             BCCCCSEEEEEECCHHHHHHHHHHHCCGG---------------------------GT-TCC-HHHHHHHHHHHHHHH--
T ss_pred             hcCCCCEEEEEeCCHHHHHHHHHHcCCcc---------------------------cc-cCc-HHHHHHHHHHHHHHH--
Confidence            45789999999999999999998663100                           00 011 234455544443332  


Q ss_pred             HHHH-HhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          214 IDYY-AKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       214 ~~~~-~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      ..++ ...+.+++||++.+++++++.|.+.++
T Consensus       192 ~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~  223 (230)
T 2vp4_A          192 IHQRRPQSCKVLVLDADLNLENIGTEYQRSES  223 (230)
T ss_dssp             TSCCSSCCCEEEEEECCC--------------
T ss_pred             HHhcccCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence            1111 233468999999999999999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.32  E-value=8.9e-12  Score=102.15  Aligned_cols=125  Identities=19%  Similarity=0.268  Sum_probs=77.2

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHHHHHHHc----CCchHHHHHHHHHcCCCCCHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDMLRSAVAA----KTPLGIKAKEAMDKGELVSDDLVVGIID  100 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li~~~~~~----~~~~~~~i~~~l~~~~~~~~~~~~~~l~  100 (245)
                      ...+|.+|+|.|+|||||||+++.|++.++  ..+++.|.+ +.....    ....|..+..+....   ...++..++.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~  103 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKDF---AGKMVESLVT  103 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHHH---HHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhHH---HHHHHHHHHH
Confidence            345688999999999999999999999986  566777654 221100    001111111111100   0112222222


Q ss_pred             HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ..+.   .+.++|+|+++....+...+...+...+..+ .++++++|++++.+|+..|.
T Consensus       104 ~~~~---~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          104 KLSS---LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             HHHH---TTCCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHHHH
T ss_pred             HHHh---cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHHHHHHHHH
Confidence            2222   2347999999988877776666666665433 56788999999999998875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.31  E-value=5e-12  Score=110.91  Aligned_cols=104  Identities=16%  Similarity=0.127  Sum_probs=78.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      ..+.+|+|+|+|||||||+++.|++.+++.+++.|.+-        .                ...+...+...+.   .
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~---~  308 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALR---Q  308 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHH---T
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHh---c
Confidence            45789999999999999999999999999999998750        0                1112222333332   2


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      +..+|+|+......+...+..++...+. +..+|+|++|.+++.+|+..|..
T Consensus       309 g~~vIiD~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          309 GKRVVIDNTNPDVPSRARYIQCAKDAGV-PCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHHHHHHTC-CEEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCCHHHHHHHHHhhcc
Confidence            4578999998888877777766655544 34789999999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.26  E-value=2.5e-11  Score=94.03  Aligned_cols=116  Identities=13%  Similarity=0.083  Sum_probs=63.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh---CcceeehH-HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH--HH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATG-DMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID--QA  102 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~-~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~--~~  102 (245)
                      .++++|+|+|++||||||+++.|++.+   |++++.++ +.++..+.....+...-          .+..+.++..  ..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~   72 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIAEVAKL   72 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHHHHHHH
Confidence            467899999999999999999999988   87776443 22322111000000000          0112222111  11


Q ss_pred             HcCCCCCCceEEcCCCCCH-HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCC
Q 025970          103 MKKPSCEKGFILDGFPRTV-VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGR  158 (245)
Q Consensus       103 l~~~~~~~~~iidg~p~~~-~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r  158 (245)
                      +..   ...+++.++.... .....+..++...+ .|+.+|+|++|++++.+|+..+
T Consensus        73 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           73 FAD---AGLVCITSFISPYTQDRNNARQIHEGAS-LPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             HHH---TTCEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCTTS
T ss_pred             HHH---CCCEEEEecCCcchHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHHHhhh
Confidence            211   1124444443322 22222333333333 5789999999999999998654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.25  E-value=1.2e-10  Score=94.00  Aligned_cols=42  Identities=29%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV   70 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~   70 (245)
                      ..+++|+|.|++||||||+++.|++.+|+.+++.+.+.+...
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~   48 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT   48 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence            356899999999999999999999999999999999887743

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.21  E-value=2e-10  Score=90.60  Aligned_cols=113  Identities=11%  Similarity=0.017  Sum_probs=63.5

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHh---Ccc--eeehHHHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHH--
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEY---CLC--HLATGDMLRSAVAAKTPLG-IKAKEAMDKGELVSDDLVVG--   97 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~--~i~~~~li~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~--   97 (245)
                      +...++.+|+|.|++||||||+++.|+..+   |..  +++.+++.. .+.....+. ....           .++..  
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~-----------~~~~~~~   87 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRA-----------ENIRRVG   87 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHH-----------HHHHHHH
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHH-----------HHHHHHH
Confidence            344667899999999999999999999998   655  788766532 111100000 0000           01111  


Q ss_pred             HHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970           98 IIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI  155 (245)
Q Consensus        98 ~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~  155 (245)
                      .+...+..  ....++.+...........+...+   .......|||++|.+++.+|.
T Consensus        88 ~~~~~~~~--~~~~vi~~~~~~~~~~r~~~~~~~---~~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A           88 EVAKLFAD--AGIICIASLISPYRTDRDACRSLL---PEGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             HHHHHHHH--TTCEEEEECCCCCHHHHHHHHHTS---CTTSEEEEEECCCHHHHHHHC
T ss_pred             HHHHHHHh--CCceEEEecCCchHHHHHHHHHhc---CCCCEEEEEEeCCHHHHHHhc
Confidence            11111111  223455555444444444443321   112336799999999999997

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.21  E-value=7.8e-10  Score=89.74  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=26.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh-Ccc
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY-CLC   58 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~-~~~   58 (245)
                      +|++|+|.|++||||||+++.|++.+ +..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~   30 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence            47899999999999999999999998 543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.12  E-value=2.6e-10  Score=104.04  Aligned_cols=116  Identities=13%  Similarity=0.067  Sum_probs=65.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh---CcceeehH-HHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATG-DMLRSAVAAKTPLG-IKAKEAMDKGELVSDDLVVGIIDQAM  103 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~-~li~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~l~~~l  103 (245)
                      .++++|+|+|+|||||||+++.|++.+   |+.++.+| +.++..+..+..+. ..-...+.        .+..++...+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l  121 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFA  121 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHH
Confidence            368899999999999999999999999   88776654 44443222111111 00000000        0111111112


Q ss_pred             cCCCCCCceEEcCCCCC-HHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970          104 KKPSCEKGFILDGFPRT-VVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG  157 (245)
Q Consensus       104 ~~~~~~~~~iidg~p~~-~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~  157 (245)
                      .   .+..+|.+ +... ......+..++... ..+.++|||++|++++.+|+..
T Consensus       122 ~---~G~iVI~d-~~s~~~~~r~~~r~ll~~~-g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          122 D---AGLVCITS-FISPYTQDRNNARQIHEGA-SLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             H---TTCEEEEE-CCCCCHHHHHHHHHHHHTT-TCCEEEEEEECCHHHHHHHCTT
T ss_pred             h---CCCEEEEe-CchhhHHHHHHHHHHHHhC-CCCeEEEEEECCHHHHHHHhcc
Confidence            1   12233334 3322 22334444444333 3467899999999999999864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.10  E-value=1.5e-10  Score=104.22  Aligned_cols=125  Identities=12%  Similarity=0.107  Sum_probs=74.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCc-----ceeehHHHHHHHHHcCCchHHHHHHHHHcCCC----CCHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL-----CHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL----VSDDLVVGII   99 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~l   99 (245)
                      ..+.+|+|+|.|||||||+++.|++.+++     .+++.|++.+.........     +++.....    ....+....+
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-----~~f~~~~~~~~~~re~~~~~~l  107 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-----NFFRPDNEEAMKVRKQCALAAL  107 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-----cccCcccHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999854     3478888665543221100     11110000    0011111122


Q ss_pred             HHHHcCC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecC-HHHHHHHHhCCc
Q 025970          100 DQAMKKP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID-DSILEERITGRW  159 (245)
Q Consensus       100 ~~~l~~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~-~e~~~~R~~~r~  159 (245)
                      ......+  ..+..+|+|+......+...+...+...+. ..++|++.|+ ++++.+|+..|.
T Consensus       108 ~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~-~v~~l~~~~~d~e~i~~ri~~r~  169 (520)
T 2axn_A          108 RDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDF-KAFFIESVCDDPTVVASNIMEVK  169 (520)
T ss_dssp             HHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEEECCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCChHHHHHHHHHhhh
Confidence            2111111  234578999998888888777666655543 2356777777 778888887654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.07  E-value=1.3e-10  Score=105.08  Aligned_cols=114  Identities=14%  Similarity=0.044  Sum_probs=66.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCc-----ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL-----CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQA  102 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~  102 (245)
                      ...+++|+|+|++||||||+++.|++.++.     .+++.|. +++.+..+..+...-....       -..+...+...
T Consensus       369 ~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~  440 (546)
T 2gks_A          369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHLSRGLGFSKEDRITN-------ILRVGFVASEI  440 (546)
T ss_dssp             GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHH
T ss_pred             cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhhcccccccHHHHHHH-------HHHHHHHHHHH
Confidence            345789999999999999999999998863     6777754 4543322111111000000       00111122222


Q ss_pred             HcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCcc-EEEEEecCHHHHHHHHh
Q 025970          103 MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKID-KVLNFAIDDSILEERIT  156 (245)
Q Consensus       103 l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~-~vi~L~~~~e~~~~R~~  156 (245)
                      +.   .+.++|+|+..........+...+    ..++ .+|+|++|.+++.+|+.
T Consensus       441 l~---~G~~VI~d~~~~~~~~r~~~~~~l----~~~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          441 VK---HNGVVICALVSPYRSARNQVRNMM----EEGKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             HH---TTCEEEEECCCCCHHHHHHHHTTS----CTTCEEEEEEECCGGGHHHHCC
T ss_pred             Hh---CCCEEEEEcCCCCHHHHHHHHHHh----hcCCEEEEEEeCCHHHHHHHhh
Confidence            22   245788886443333333333221    1246 89999999999999976

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.03  E-value=3.1e-09  Score=83.63  Aligned_cols=28  Identities=14%  Similarity=0.355  Sum_probs=24.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .++.+|+|+||+||||||+++.|+..+.
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4577999999999999999999998764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.02  E-value=3.6e-11  Score=95.52  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ++|+|.|++||||||+++.|++.++.
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999999853

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.98  E-value=2.4e-09  Score=84.94  Aligned_cols=28  Identities=32%  Similarity=0.458  Sum_probs=25.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +++.+|+|+||+||||||+++.|+..++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4577999999999999999999998874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.97  E-value=1.1e-08  Score=80.59  Aligned_cols=29  Identities=34%  Similarity=0.507  Sum_probs=24.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +..++.+|+|+|++||||||+++.|+..+
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34567899999999999999999999876

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.96  E-value=7.5e-09  Score=81.29  Aligned_cols=118  Identities=12%  Similarity=0.117  Sum_probs=72.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCC--c-------------hHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKT--P-------------LGIKAKEAMDKGELV   90 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~--~-------------~~~~i~~~l~~~~~~   90 (245)
                      .+.++|+|+|.|||||+|+++.|.+.+|   +.++++++.+++......  .             +++.+......-...
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA   88 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence            3778999999999999999999998885   778999999986433111  1             111111000000000


Q ss_pred             CHHHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970           91 SDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI  155 (245)
Q Consensus        91 ~~~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~  155 (245)
                      ....+..+.   +... ....|||||. +.......|.+.+.    ..-.+|.+.+|+++..+|.
T Consensus        89 d~~~~~~~~---~~~~-~~~~vII~dv-R~~~Ev~~fr~~~g----~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           89 DPGFFCRKI---VEGI-SQPIWLVSDT-RRVSDIQWFREAYG----AVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             CTTTTHHHH---SBTC-CCSEEEECCC-CSHHHHHHHHHHHG----GGEEEEEEEECHHHHHHTT
T ss_pred             CchHHHHHH---HHhc-CCCcEEEeCC-CCHHHHHHHHHhCC----CcEEEEEEECCHHHHHHHh
Confidence            000111111   1111 2246899997 77777777766431    2236899999999999993

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.95  E-value=2.2e-09  Score=97.48  Aligned_cols=114  Identities=10%  Similarity=0.075  Sum_probs=62.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC------cceeehHHHHHHHHHcCCchHHHHH-HHHHcCCCCCHHHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC------LCHLATGDMLRSAVAAKTPLGIKAK-EAMDKGELVSDDLVVGIIDQ  101 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~------~~~i~~~~li~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~l~~  101 (245)
                      .++++|+|+|+|||||||+++.|++.++      +.+++.|. ++..+..+..+...-+ ..+        ..+...+..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~  464 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHTNI--------QRIAFVATE  464 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHHHH--------HHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHHHH--------HHHHHHHHH
Confidence            4578999999999999999999999976      35666644 4443221111100000 000        001112222


Q ss_pred             HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970          102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT  156 (245)
Q Consensus       102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~  156 (245)
                      ...   .+..+|.+...........+..++...+  +.++|||++|.+++.+|..
T Consensus       465 ~~~---~g~~VI~~~is~~~~~R~~~r~l~~~~g--~~~~V~Lda~~ev~~~R~~  514 (573)
T 1m8p_A          465 LTR---AGAAVIAAPIAPYEESRKFARDAVSQAG--SFFLVHVATPLEHCEQSDK  514 (573)
T ss_dssp             HHH---TTCEEEEECCCCCHHHHHHHHHHHHTTS--EEEEEEECCCHHHHHHHCS
T ss_pred             HHh---CCCEEEEEcCCCcHHHHHHHHHHHHhcC--CeEEEEEeCCHHHHHHHhc
Confidence            221   1234555533222333334444443322  4589999999999999953

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.88  E-value=3.6e-09  Score=86.57  Aligned_cols=122  Identities=19%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHH-HHH--cCCchHHHHHH---HHHcC-----CCCCHHHHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRS-AVA--AKTPLGIKAKE---AMDKG-----ELVSDDLVVGIID  100 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~-~~~--~~~~~~~~i~~---~l~~~-----~~~~~~~~~~~l~  100 (245)
                      ++|+|.|++||||||+++.|++.++..+++.|.+... ...  ...+.......   .+..-     ..+....+.+...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            3789999999999999999999999999999876311 000  00000000000   00000     0122233333344


Q ss_pred             HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHh----cCCCccEEEEEecCH-HHHHHHHhCCc
Q 025970          101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEK----QGTKIDKVLNFAIDD-SILEERITGRW  159 (245)
Q Consensus       101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~----~~~~~~~vi~L~~~~-e~~~~R~~~r~  159 (245)
                      ..+.-...+..+|+++...  .   .+..++..    .+. ...+|||++|. +++.+|+.+|.
T Consensus        82 ~~i~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~-~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           82 FEVDWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGF-QWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             HHHHTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSC-EEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEeccHH--H---HHHHHHhcccccccC-ceEEEEecchhHHHHHHHHHHHH
Confidence            4442223345677775432  1   22223322    112 23799999997 99999999885

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.85  E-value=6.4e-08  Score=75.22  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCc-ceeehHHHHHHHHHcC--CchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCL-CHLATGDMLRSAVAAK--TPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~-~~i~~~~li~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      .+++|+|++||||||+++.|+..++. .+++.+++.... ..+  .+....... .    .+ .+.+.........   .
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~-~----~~-~~~l~~~~~~~~~---~   72 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPWESDELL-A----LT-WKNITDLTVNFLL---A   72 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGGGCHHHH-H----HH-HHHHHHHHHHHHH---T
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCccchhHH-H----HH-HHHHHHHHHHHHh---c
Confidence            47899999999999999999988754 788887654320 000  000000000 0    00 0011111111111   1


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCC-ccEEEEEecCHHHHHHHHhCCc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTK-IDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~-~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ...+|+|++. .......+...+...+.. ...+++|.+|++.+.+|...|.
T Consensus        73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence            2357888853 333333333332211222 3357889999999999998875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.84  E-value=5.8e-09  Score=81.29  Aligned_cols=163  Identities=18%  Similarity=0.162  Sum_probs=86.5

Q ss_pred             EEEECCCCCChhHHHHHHHhHhC-cceeehHHHHHHHHHcCC----ch----HHHHHHHHHcCCCCCHH--------HHH
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYC-LCHLATGDMLRSAVAAKT----PL----GIKAKEAMDKGELVSDD--------LVV   96 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~-~~~i~~~~li~~~~~~~~----~~----~~~i~~~l~~~~~~~~~--------~~~   96 (245)
                      |+|+||+||||||+++.|.+.+. ...++....-|. ..++.    .+    ...+...+.+|..+...        +..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~-pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC-CCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            78999999999999999998874 233333222111 00011    10    12444444544432110        011


Q ss_pred             HHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCC
Q 025970           97 GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPK  176 (245)
Q Consensus        97 ~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~  176 (245)
                      ..+...+..   ++.+|+|.-+....+.   ...   .+..+..++.+..|.+++.+|+..|.                 
T Consensus        83 ~~v~~~l~~---g~~vil~id~~g~~~~---k~~---~~~~~~~Ifi~pps~e~L~~RL~~Rg-----------------  136 (186)
T 1ex7_A           83 ASVKQVSKS---GKTCILDIDMQGVKSV---KAI---PELNARFLFIAPPSVEDLKKRLEGRG-----------------  136 (186)
T ss_dssp             HHHHHHHHH---TSEEEEECCHHHHHHH---HTC---GGGCCEEEEEECSCHHHHHHHHHHHC-----------------
T ss_pred             ceeeehhhC---CCEEEecCCHHHHHHH---HHh---cccCceEEEEeCCCHHHHHHHHHhcC-----------------
Confidence            112222221   3456777543222222   111   11234344445566789999998874                 


Q ss_pred             CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          177 VHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                      .++.+.+++|+.........   +....-.++.++  .++++.++.|.++|.
T Consensus       137 ----------------~e~~e~i~~Rl~~a~~e~~~---~~~~~fD~vIvN--ddle~a~~~l~~iI~  183 (186)
T 1ex7_A          137 ----------------TETEESINKRLSAAQAELAY---AETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             ----------------CSCHHHHHHHHHHHHHHHHH---HTTTCSSEEEEC--SSHHHHHHHHHHHHT
T ss_pred             ----------------CCCHHHHHHHHHHHHHHHhh---ccccCCcEEEEC--cCHHHHHHHHHHHHH
Confidence                            45778899999876543321   111111245554  478999999988874

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.84  E-value=2.7e-08  Score=84.25  Aligned_cols=29  Identities=28%  Similarity=0.205  Sum_probs=26.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      .++++|+|.|+.||||||+++.|++.++.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            35789999999999999999999999854

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.83  E-value=3.8e-09  Score=83.29  Aligned_cols=52  Identities=19%  Similarity=0.202  Sum_probs=38.9

Q ss_pred             hhHHHHHHHHhcc-CCCCCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehHHH
Q 025970           14 VDMMTELLRRFKC-SSKPDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATGDM   65 (245)
Q Consensus        14 ~~~~~~~~~~~~~-~~~~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~~l   65 (245)
                      .+.++.++..+.. .+.++.+|+|+|++||||||+++.|+..+   +.  .+++.|.+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A            4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            3566777776664 45678899999999999999999999875   43  34455543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.81  E-value=2.2e-08  Score=79.24  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=32.8

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeehHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLATGDML   66 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~~~li   66 (245)
                      ...++.+|+|+|++||||||+++.|+..++  +.+++.+..+
T Consensus         2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            2 SAPKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             ---CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            345778999999999999999999999988  8888876543

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.71  E-value=1.3e-07  Score=78.65  Aligned_cols=165  Identities=13%  Similarity=0.111  Sum_probs=92.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK  104 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~  104 (245)
                      ...+++|+|.|..||||||+++.|.+.++   +.++.+.          .+-+....      .        ..+...+.
T Consensus        83 ~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~--------~yl~R~~~  138 (304)
T 3czq_A           83 TGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------Q--------WYFQRYVA  138 (304)
T ss_dssp             HCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------S--------CTTHHHHT
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------c--------hHHHHHHH
Confidence            35699999999999999999999999984   4344331          11111111      0        11122344


Q ss_pred             CCCC-CCceEEcCCC------------CCH-------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970          105 KPSC-EKGFILDGFP------------RTV-------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus       105 ~~~~-~~~~iidg~p------------~~~-------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                      .++. +.-+|.|.+-            ...       .+...|+..+...| .|++.++|++|+++..+|+..|..++..
T Consensus       139 ~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G-~~~lKf~L~Is~eeq~kR~~~R~~dp~k  217 (304)
T 3czq_A          139 TFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEG-IHLFKFWINIGREMQLKRFHDRRHDPLK  217 (304)
T ss_dssp             TCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEEECCHHHHHHHHHHHHHCTTT
T ss_pred             hcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-CeeEEEEEECCHHHHHHHHHHhhcCccc
Confidence            4432 2334555321            111       12233434455455 6899999999999999999887533211


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHH--HHHHHHHHhhHHHHHHHH-hcCcEEEEeCCCCh---hHHHHH
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLK--SRLEAFHKQTEPVIDYYA-KKGVLAQLHAEKPP---KEVTVE  238 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~--~rl~~~~~~~~~l~~~~~-~~~~~~~id~~~~~---e~v~~~  238 (245)
                                                +=..+...++  .....|.+....+...-+ ....|++|+++.+.   ..+...
T Consensus       218 --------------------------~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~  271 (304)
T 3czq_A          218 --------------------------IWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRH  271 (304)
T ss_dssp             --------------------------GGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHH
T ss_pred             --------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHH
Confidence                                      0011222222  223444444444444332 23479999999865   345555


Q ss_pred             HHHhh
Q 025970          239 VQKVL  243 (245)
Q Consensus       239 i~~~l  243 (245)
                      |.+.|
T Consensus       272 Il~~l  276 (304)
T 3czq_A          272 MLTKL  276 (304)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            55544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.67  E-value=7e-07  Score=72.37  Aligned_cols=39  Identities=18%  Similarity=0.015  Sum_probs=28.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      +++.++.+..++.+|.|+|++||||||+++.|+..+|..
T Consensus        14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            566677777888999999999999999999999988865

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.67  E-value=3.1e-07  Score=81.59  Aligned_cols=121  Identities=14%  Similarity=0.173  Sum_probs=69.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCC----CCHHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL----VSDDLVVGII   99 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~l   99 (245)
                      ..+.+|+|+|.|||||||+++.|++.++     ...++.+.+.+.........     +++.....    ....+....+
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence            4577999999999999999999999875     45666666544432110100     00000000    0011222222


Q ss_pred             ---HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEe---cCHHHHHHHHhCC
Q 025970          100 ---DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFA---IDDSILEERITGR  158 (245)
Q Consensus       100 ---~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~---~~~e~~~~R~~~r  158 (245)
                         ...+.. ..+..+|+|.......+...+...+...+.   .+++|+   .+++.+.+|+..+
T Consensus       112 ~~~~~~l~~-~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~---~vv~l~~~~~~~~~i~~r~~~~  172 (469)
T 1bif_A          112 NDVRKFLSE-EGGHVAVFDATNTTRERRAMIFNFGEQNGY---KTFFVESICVDPEVIAANIVQV  172 (469)
T ss_dssp             HHHHHHHHT-TCCSEEEEESCCCSHHHHHHHHHHHHHHTC---EEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---cEEEEEEECCCHHHHHHHHHHh
Confidence               222211 223568999987888777777665554432   356666   4578888888754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.65  E-value=8.5e-08  Score=77.05  Aligned_cols=34  Identities=24%  Similarity=0.179  Sum_probs=20.7

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHH-hHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIK-DEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La-~~~   55 (245)
                      ...+++..++.+|+|+||+||||||+++.|+ ..+
T Consensus        18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3445566778899999999999999999999 665

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.61  E-value=1.2e-07  Score=85.70  Aligned_cols=116  Identities=13%  Similarity=0.088  Sum_probs=54.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC------cceeehHHHHHHHHHcCCchHH-HHHHHHHcCCCCCHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC------LCHLATGDMLRSAVAAKTPLGI-KAKEAMDKGELVSDDLVVGII   99 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~------~~~i~~~~li~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~l   99 (245)
                      ...++.+|+|+|++||||||+++.|+..++      +.+++.+.+... +..+..+.. .....+        ..+..+.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~--------r~i~~v~  435 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNV--------RRIGFVA  435 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHH--------HHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHH--------HHHHHHH
Confidence            345778999999999999999999999884      445777665432 111100000 000000        0011111


Q ss_pred             HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHh
Q 025970          100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERIT  156 (245)
Q Consensus       100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~  156 (245)
                      +. +..  ....++..+............+++...+  .-+.|||++|.+++.+|..
T Consensus       436 q~-l~~--~~~ivi~~~~~~~~~~r~~~r~lL~~~g--~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          436 SE-ITK--NRGIAICAPIAPYRQTRRDVRAMIEAVG--GFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             HH-HHH--TTCEEEECCCCCCHHHHHHHHHHHHTTS--EEEEEEECC----------
T ss_pred             HH-HHh--cCCEEEEecCCccHHHHHHHHHHHHHcC--CEEEEEEcCCHHHHHHhcc
Confidence            11 111  1223344433222333344445554443  2379999999999999964

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.47  E-value=2.7e-06  Score=72.10  Aligned_cols=30  Identities=23%  Similarity=0.161  Sum_probs=26.5

Q ss_pred             CCCCcEEEEECCCCCChhHHH-HHHHhHhCc
Q 025970           28 SKPDKRLVLIGPPGSGKGTQS-PVIKDEYCL   57 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~-~~La~~~~~   57 (245)
                      +.++++|+|.|+.||||||++ +.|++.++.
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            345789999999999999999 999998864

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.46  E-value=1.8e-06  Score=73.02  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=23.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .++++|+|.|+.||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3568999999999999999999998874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.44  E-value=1.4e-07  Score=79.60  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=31.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDM   65 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~l   65 (245)
                      ..+|.+|.|.|++||||||+++.|+..++       +.+++.|..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            45688999999999999999999998875       455777654

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.42  E-value=2.1e-06  Score=73.57  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=23.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .++++|+|.|+.||||||+++.|++.++
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5678999999999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.38  E-value=5.1e-06  Score=63.49  Aligned_cols=115  Identities=19%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCC--ch-HHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKT--PL-GIKAKEAMDKGELVSDDLVVGIIDQAM  103 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~l~~~l  103 (245)
                      +..++.+++|+|++||||||+++.+.  .+...++.+. ++..+.+..  .. .....           ..........+
T Consensus         5 ~i~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~-~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~   70 (171)
T 4gp7_A            5 TIPELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDF-CRGLMSDDENDQTVTGAAF-----------DVLHYIVSKRL   70 (171)
T ss_dssp             EEESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHH-HHHHHCSSTTCGGGHHHHH-----------HHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHH-HHHHhcCcccchhhHHHHH-----------HHHHHHHHHHH
Confidence            44577899999999999999999865  3566677654 333332211  10 00000           01111111222


Q ss_pred             cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          104 KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       104 ~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ..   +...+++.........++...+.......| .+++||-|...+-.|...|.
T Consensus        71 ~~---g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           71 QL---GKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             HT---TCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTCS
T ss_pred             hC---CCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhccc
Confidence            11   234566665444433333333333444566 58889999999999988774

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.37  E-value=6.1e-05  Score=59.94  Aligned_cols=28  Identities=14%  Similarity=0.254  Sum_probs=24.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +++.+++|+||+||||||+.+.|+..+.
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            5677999999999999999999998764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.29  E-value=5.1e-07  Score=70.01  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCc--ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC-----HHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL--CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS-----DDLVVGII   99 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~l   99 (245)
                      ...++.+|+|+|++||||||+++.|+..++.  .+++.+++.... ......           ..++     ...+...+
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~-----------~~~~~~~~~~~~v~~~l   72 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRID-----------PWLPQSHQQNRMIMQIA   72 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCC-----------TTSSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hccccc-----------CCccchhhhhHHHHHHH
Confidence            4567889999999999999999999987644  477777664321 110000           0111     11111111


Q ss_pred             HHHHcC-CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          100 DQAMKK-PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       100 ~~~l~~-~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ...... ......++++++.... ....+.    ..+.. ...+++.++.++++.|+..|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~----~~~~~-~~~ls~~~~~~v~~~R~~~r~  127 (191)
T 1zp6_A           73 ADVAGRYAKEGYFVILDGVVRPD-WLPAFT----ALARP-LHYIVLRTTAAEAIERCLDRG  127 (191)
T ss_dssp             HHHHHHHHHTSCEEEECSCCCTT-TTHHHH----TTCSC-EEEEEEECCHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCCeEEEeccCcHH-HHHHHH----hcCCC-eEEEEecCCHHHHHHHHHhcC
Confidence            111000 0112346778764422 111111    11122 367899999999999999874

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.25  E-value=6e-06  Score=73.50  Aligned_cols=127  Identities=14%  Similarity=0.152  Sum_probs=61.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCch-HHHHHHHHHcCCC--CCHHHHHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPL-GIKAKEAMDKGEL--VSDDLVVGIIDQ  101 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~-~~~i~~~l~~~~~--~~~~~~~~~l~~  101 (245)
                      ...+++|+|.|..||||+|+++.|.+.++   +.++.+..=-..  ....++ .+.....=..|..  .+..+...++..
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~--E~~~~yl~R~~~~lP~~G~IvIfdRSwYs~~~v~  117 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDE--ELERPPQWRFWRRLPPKGRTGIFFGNWYSQMLYA  117 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHH--HHTSCTTHHHHHHCCCTTCEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChh--hccCChhhhHHHhCCCCCeEEEEeCchhhHHHHH
Confidence            67899999999999999999999999985   333332100000  001111 1111111111211  011222333222


Q ss_pred             HHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccC
Q 025970          102 AMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHP  162 (245)
Q Consensus       102 ~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~  162 (245)
                      ++... +..    +.+..-..+...|+..+...| .+.+.++|++|+++..+|+..|..++
T Consensus       118 rv~g~-~~~----~~~~~~~~~i~~FE~~L~~~g-~~i~KffL~is~eeq~kRl~~R~~~p  172 (500)
T 3czp_A          118 RVEGH-IKE----AKLDQAIDAAERFERMLCDEG-ALLFKFWFHLSKKQLKERLKALEKDP  172 (500)
T ss_dssp             HHTTS-SCH----HHHHHHHHHHHHHHHHHHHTT-CEEEEEEEECCHHHHHHCC-------
T ss_pred             HHhcC-CCH----HHHHHHHHHHHHHHHHHhcCC-CeEEEEEEECCHHHHHHHHHHHhcCC
Confidence            22110 000    000001233344455565554 57899999999999999999987543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.20  E-value=4.7e-07  Score=75.44  Aligned_cols=38  Identities=13%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLR   67 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~   67 (245)
                      ++++|.|+|++||||||+++.|++.+|     +.++++|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            567899999999999999999999887     78999988764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.18  E-value=2e-06  Score=67.82  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             hHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHH
Q 025970           15 DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGD   64 (245)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~   64 (245)
                      ++.+.++.++.....++.+|+|.|++||||||+++.|+..+.     ...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            577778877764456788999999999999999999998874     45566543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.17  E-value=8.2e-07  Score=74.77  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      +++|+|+||+||||||+++.|++.++..++++|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            45899999999999999999999999999998765

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.15  E-value=1e-06  Score=74.46  Aligned_cols=37  Identities=30%  Similarity=0.472  Sum_probs=33.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .++++|+|+||+||||||++..||++++..+||+|.+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            3456899999999999999999999999999998865

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.10  E-value=2e-05  Score=70.11  Aligned_cols=111  Identities=18%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAM  103 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l  103 (245)
                      ....+++|+|.|..||||+|+.+.|.+.++   +.++.+.          .+.....      +.        ..+....
T Consensus       296 ~~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~--------~yl~R~~  351 (500)
T 3czp_A          296 FRQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQ--------PYLWRFW  351 (500)
T ss_dssp             GGGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TS--------CTTHHHH
T ss_pred             hCCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cc--------hHHHHHH
Confidence            446899999999999999999999999884   4344331          0111100      00        1112344


Q ss_pred             cCCCCC-CceEEcCCC------------CCH-------HHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccC
Q 025970          104 KKPSCE-KGFILDGFP------------RTV-------VQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHP  162 (245)
Q Consensus       104 ~~~~~~-~~~iidg~p------------~~~-------~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~  162 (245)
                      ..++.. .-+|+|.+-            .+.       .+...|+..+...| .+.+.++|++|+++..+|+..|..++
T Consensus       352 ~~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g-~~i~Kf~L~is~eeQ~~R~~~R~~~p  429 (500)
T 3czp_A          352 RHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYG-IIVVKFWLAIDKQTQMERFKEREKTP  429 (500)
T ss_dssp             TTCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred             HhCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEEECCHHHHHHHHHHHhcCC
Confidence            444433 334555421            111       23333444455554 47799999999999999999987544

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.05  E-value=2.8e-06  Score=70.97  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=32.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      ..|++|+|.||+||||||++..|++.++..+|++|..
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            4467899999999999999999999999999988653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.02  E-value=2.9e-06  Score=71.87  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      .+|+|.||+||||||++..|++.++..+|++|.+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            5899999999999999999999999999998875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.99  E-value=3.5e-06  Score=70.51  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      +++|+|.||+||||||++..|++.++..+||+|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            56899999999999999999999999999988764

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.98  E-value=6.6e-06  Score=66.52  Aligned_cols=40  Identities=28%  Similarity=0.376  Sum_probs=35.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA   71 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~   71 (245)
                      ++|.|+|++||||||+++.|++.+|+++++.++.+++.+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            5899999999999999999999999999998887766543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.97  E-value=2.5e-06  Score=72.59  Aligned_cols=45  Identities=20%  Similarity=0.281  Sum_probs=34.7

Q ss_pred             hHHHHHHHHhccC--CCCCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970           15 DMMTELLRRFKCS--SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCH   59 (245)
Q Consensus        15 ~~~~~~~~~~~~~--~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~   59 (245)
                      .+.+.++..+...  +...+.|+|+|+|||||||+++.|++.+++.+
T Consensus         6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A            6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            4555666666543  33345699999999999999999999999877

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.96  E-value=7.5e-06  Score=68.15  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=30.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDM   65 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~l   65 (245)
                      .++|..++|+||||+|||++++.+++.+|.+++  +...+
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l   72 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL   72 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence            456778889999999999999999999987655  44444

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=97.95  E-value=6.2e-05  Score=61.79  Aligned_cols=164  Identities=14%  Similarity=0.090  Sum_probs=92.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC---cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC---LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK  105 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~  105 (245)
                      ..+.+|+|.|..||||+++.+.|.+.++   +.++....        .+.                .+.....+...+..
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~--------Pt~----------------eE~~~~ylwR~~~~  128 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA--------PTD----------------EEKSHDFLWRIEKQ  128 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS--------CCH----------------HHHTSCTTHHHHTT
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC--------CCh----------------hhhcCCHHHHHHHh
Confidence            4789999999999999999999999985   33443310        000                00001111122333


Q ss_pred             CCC-CCceEEcC-------------CCC------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970          106 PSC-EKGFILDG-------------FPR------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus       106 ~~~-~~~~iidg-------------~p~------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                      ++. +.-.|+|+             +..      ...+...|+..+...|. ..+-++|++|.++..+|+..|..++.. 
T Consensus       129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~-~ilKf~LhIskeEQ~kR~~~R~~dP~k-  206 (289)
T 3rhf_A          129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGT-TIVKVMLNISKDEQKKRLIARLDDPSK-  206 (289)
T ss_dssp             CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTE-EEEEEEEECCHHHHHHHHHHHHHCGGG-
T ss_pred             CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCC-EEEEEEEECCHHHHHHHHHHHhcCCcc-
Confidence            332 23344443             111      12344556666766654 346799999999999999998754321 


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHH--HHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhH---HHHHH
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSR--LEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKE---VTVEV  239 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~r--l~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~---v~~~i  239 (245)
                                               +=..++..++.+  ...|......+...-+. ...|++|+++...-.   +...|
T Consensus       207 -------------------------~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~l  261 (289)
T 3rhf_A          207 -------------------------HWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLL  261 (289)
T ss_dssp             -------------------------GGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHH
T ss_pred             -------------------------cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHH
Confidence                                     112233334333  35555555544444332 357999998876444   34444


Q ss_pred             HHhh
Q 025970          240 QKVL  243 (245)
Q Consensus       240 ~~~l  243 (245)
                      .+.|
T Consensus       262 l~~L  265 (289)
T 3rhf_A          262 LDAL  265 (289)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.92  E-value=6.3e-06  Score=73.64  Aligned_cols=36  Identities=11%  Similarity=0.044  Sum_probs=31.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCc-------ceeehHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL-------CHLATGD   64 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~-------~~i~~~~   64 (245)
                      ..+++|+|+|.+||||||+++.|+++++.       .+++.|.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            46789999999999999999999999986       5677654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.87  E-value=7e-06  Score=70.98  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      ++++|+|.||+||||||++..|++.++..+|++|.
T Consensus         1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            35689999999999999999999999999998865

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.86  E-value=1e-05  Score=62.20  Aligned_cols=29  Identities=28%  Similarity=0.353  Sum_probs=24.8

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      |.++.+++|+||+||||||+++.|+..+.
T Consensus         2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34567999999999999999999998764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.82  E-value=1.6e-05  Score=65.58  Aligned_cols=38  Identities=24%  Similarity=0.475  Sum_probs=28.9

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      +.++..++++  ++|+|||||||||+++.|+..++...+.
T Consensus        37 ~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~   74 (274)
T 2x8a_A           37 KALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFIS   74 (274)
T ss_dssp             HHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             HHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence            3334444444  8999999999999999999998765443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.80  E-value=5.1e-05  Score=58.12  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh----C--cceeehHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY----C--LCHLATGDMLRS   68 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~----~--~~~i~~~~li~~   68 (245)
                      .++..++|+||+|+||||+++.++..+    |  +.+++..+++..
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            446789999999999999999998776    4  345666666543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.79  E-value=2.4e-05  Score=65.01  Aligned_cols=50  Identities=22%  Similarity=0.198  Sum_probs=36.5

Q ss_pred             HHHHHHHHhcc----CCCCCcEEEEECCCCCChhHHHHHHHhHhC-------ccee-ehHHH
Q 025970           16 MMTELLRRFKC----SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHL-ATGDM   65 (245)
Q Consensus        16 ~~~~~~~~~~~----~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i-~~~~l   65 (245)
                      .+..++.++..    .+.+|.+|+|.|++||||||+++.|+..++       ...+ +.|+.
T Consensus        12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            44445444432    456788999999999999999999998875       3345 66654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.74  E-value=2.1e-05  Score=61.52  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=26.1

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +.+.++..|+|.||+||||||+++.|.+.+.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3455778999999999999999999998875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.73  E-value=4e-05  Score=65.98  Aligned_cols=45  Identities=18%  Similarity=0.205  Sum_probs=36.6

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ...+++.++...+++..++|.||+||||||+++.|+..++..++.
T Consensus       155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            345556666677788899999999999999999999988765554

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.73  E-value=2.2e-05  Score=68.74  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=30.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .++|.-|+|+||||+|||++++++|..++.+++.+
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45677889999999999999999999999876654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.73  E-value=2.4e-05  Score=65.60  Aligned_cols=38  Identities=16%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDM   65 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~l   65 (245)
                      ..++.+|.|+|++||||||+++.|+..++       +.++++|..
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            36778999999999999999999998876       566666643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.71  E-value=2.2e-05  Score=68.60  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=30.1

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .++|.=|+|+||||+|||++++++|..++.+++.+
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            35566789999999999999999999999877654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.70  E-value=2.6e-05  Score=68.34  Aligned_cols=36  Identities=28%  Similarity=0.488  Sum_probs=30.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..++|.=|+|+||||+|||++++++|..+|.+++.+
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            345667889999999999999999999999877654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.68  E-value=2.6e-05  Score=67.52  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=30.0

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .++|.-++|+||||+|||++|+++|..++.+++.+
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            34566789999999999999999999999887654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.63  E-value=2.9e-05  Score=61.66  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=24.3

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++....++.+++|+||+||||||+++.|+..+
T Consensus        14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4455566778899999999999999999999876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.61  E-value=6.7e-05  Score=64.15  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=28.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ++..++|.||||+|||++|+.+++.++.+++.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            456789999999999999999999998776644

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.61  E-value=4.2e-05  Score=62.08  Aligned_cols=33  Identities=27%  Similarity=0.482  Sum_probs=27.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+.-++|+|+||+||||+++.++..++.+++..
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            345689999999999999999999998665543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.61  E-value=5.1e-05  Score=61.41  Aligned_cols=28  Identities=29%  Similarity=0.567  Sum_probs=24.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      -++|+|+||+||||+++.++..++...+
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i   78 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFI   78 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3899999999999999999998865444

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.60  E-value=4.8e-05  Score=61.61  Aligned_cols=34  Identities=35%  Similarity=0.504  Sum_probs=28.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..+.-++|+|+||+|||++++.+++.++.+++..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            4456789999999999999999999998766543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.59  E-value=4.2e-05  Score=58.89  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=23.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ++++|+|++||||||+++.|+..+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            478999999999999999999888643

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.59  E-value=4.1e-05  Score=67.27  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ...+|.-|+|+||||+|||++++++|..++.+++.+
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence            345677889999999999999999999999877654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.58  E-value=4.5e-05  Score=63.56  Aligned_cols=41  Identities=27%  Similarity=0.487  Sum_probs=32.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRS   68 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~   68 (245)
                      ..++..++|+||||+|||++++.++..++..++  +..++...
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~   88 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM   88 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence            355668899999999999999999999987655  44455544

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.58  E-value=5.3e-05  Score=65.96  Aligned_cols=36  Identities=28%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..++|.=|+|+||||+|||++|+++|..++.+++.+
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            345667789999999999999999999999887654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.55  E-value=6.1e-05  Score=62.34  Aligned_cols=32  Identities=38%  Similarity=0.662  Sum_probs=27.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ++..++|+|+||+||||+++.++..++.+++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            45688999999999999999999999876553

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.55  E-value=6.2e-05  Score=61.89  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=28.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .++.-++|+|+||+|||++++.++..++..++..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            4556789999999999999999999998776543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.54  E-value=4.2e-05  Score=59.78  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=22.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++|+||+||||||+.+.|...+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45688999999999999999998765

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.54  E-value=4.7e-05  Score=59.48  Aligned_cols=34  Identities=15%  Similarity=0.165  Sum_probs=29.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      .+..|+|+|++||||||++..|+++.+ .+++.|.
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            456789999999999999999998866 7887764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.52  E-value=5.2e-05  Score=66.53  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      ++..|+|+||||+||||+++.|++.++.+++.++
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            4567899999999999999999999998877553

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.52  E-value=8.8e-05  Score=55.94  Aligned_cols=36  Identities=19%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+..++.+++|.|+.||||||+.+.|+..+
T Consensus        22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            445666677888899999999999999999999766

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.52  E-value=0.00011  Score=64.96  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=32.6

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeeh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLAT   62 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~   62 (245)
                      +++..+.....++.-++|+||||+|||++++.+++.++  .+++.+
T Consensus        51 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~   96 (456)
T 2c9o_A           51 VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM   96 (456)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred             HHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence            33444444444556789999999999999999999998  655543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.50  E-value=0.00015  Score=55.12  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=27.9

Q ss_pred             HHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           16 MMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+..+...+..  ..+..++|+|++|+|||++++.+++.+
T Consensus        30 ~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           30 EIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34444444332  334567899999999999999999886

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.49  E-value=8.6e-05  Score=54.91  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=27.0

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +..+.+.+......+.-++|+|+||+|||++++.++...
T Consensus        10 ~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            334444333323334457899999999999999999764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.49  E-value=9.4e-05  Score=60.78  Aligned_cols=27  Identities=30%  Similarity=0.600  Sum_probs=23.8

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCccee
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ++|+|+||+||||+++.++..++..++
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i  102 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFI  102 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEE
Confidence            899999999999999999998865444

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.48  E-value=8.5e-05  Score=62.48  Aligned_cols=34  Identities=29%  Similarity=0.566  Sum_probs=28.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .++.-++|+||||+|||++++.+++..+..++.+
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            3466789999999999999999999998765543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.47  E-value=7.7e-05  Score=61.04  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=29.8

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..++..++|+|+||+|||++++.+++..+.+++..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            45567889999999999999999999998776644

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.47  E-value=9.3e-05  Score=61.81  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+++.++...+++.+++|+|++||||||+++.|+..+
T Consensus       114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3567777888889999999999999999999999776

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.42  E-value=0.00016  Score=54.95  Aligned_cols=27  Identities=22%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            334567999999999999999999887

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.41  E-value=0.00016  Score=60.86  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..++..++|+|+||+|||++++.+++.++.+++..
T Consensus        52 ~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           52 NECLDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            34455689999999999999999999998766544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.41  E-value=0.00012  Score=61.71  Aligned_cols=32  Identities=28%  Similarity=0.549  Sum_probs=26.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh-Cccee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCHL   60 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~i   60 (245)
                      .++.-++|+||||+|||++++.++..+ +..++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            345688999999999999999999988 65544

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.39  E-value=9.9e-05  Score=63.35  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=28.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+..++|+|+||+|||++++.|++.++.+++.+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~  103 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS  103 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            445689999999999999999999998766644

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.39  E-value=0.00033  Score=58.73  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDML   66 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li   66 (245)
                      .+..++|+|+||+||||+++.++..+   +  +.+++..++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            45577899999999999999999877   4  4566666554

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.39  E-value=0.0001  Score=61.11  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=26.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ++..++|+|+||+|||++++.+++.++.+++
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            4557789999999999999999999986554

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.38  E-value=0.00012  Score=61.32  Aligned_cols=28  Identities=18%  Similarity=0.165  Sum_probs=25.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++.+|+|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            5678899999999999999999999866

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.37  E-value=0.00019  Score=59.59  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=24.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++..++|+|+||+|||++++.+++.+
T Consensus        64 ~~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           64 ETPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             SCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3456678999999999999999999887

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.35  E-value=0.00013  Score=57.30  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ...++.+++|+||+||||||+++.|+..+.
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            345677999999999999999999997764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.35  E-value=0.00013  Score=62.29  Aligned_cols=34  Identities=29%  Similarity=0.566  Sum_probs=28.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .++.-|+|+||||+|||++++.++..++..++.+
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            3455689999999999999999999998776543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.35  E-value=0.00017  Score=56.67  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=24.9

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ...++|.||||+||||+|..|++.++-.++
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            446899999999999999999988754444

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.34  E-value=0.00065  Score=52.71  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=28.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh---C--cceeehHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDMLRS   68 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~li~~   68 (245)
                      ..++|+|++|+||||+++.++..+   +  +.+++...++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~   96 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE   96 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence            678999999999999999999877   3  334666655443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.33  E-value=0.00015  Score=61.34  Aligned_cols=30  Identities=33%  Similarity=0.458  Sum_probs=25.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCH   59 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~   59 (245)
                      ++..++|+||||+||||+++.++..++..+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            445789999999999999999999987543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.32  E-value=0.00024  Score=60.65  Aligned_cols=33  Identities=30%  Similarity=0.566  Sum_probs=28.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      .++..++|+|+||+|||++++.++..++..++.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            356678999999999999999999999876553

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.30  E-value=0.0014  Score=54.51  Aligned_cols=25  Identities=16%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ..+..|+|+||   ||+|+.+.|.+.+.
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~  127 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFP  127 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence            34456788998   79999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.30  E-value=0.00012  Score=54.63  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++|+|++|+||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56688999999999999999999876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.30  E-value=5.9e-05  Score=61.46  Aligned_cols=32  Identities=28%  Similarity=0.547  Sum_probs=26.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      +.-++|+|+||+|||++++.++..++.+++.+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            33478999999999999999999998766543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.23  E-value=0.00037  Score=59.30  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=28.3

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ...+.....++..++|+||||+|||++++.+++.++.
T Consensus        60 ~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           60 LEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             HHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             HHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3333333334568899999999999999999999863

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.23  E-value=0.00038  Score=58.77  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=24.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+|.+++|.|++||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999766

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.21  E-value=0.00018  Score=67.50  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=30.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..+|.-|+|+||||+|||++++.+|..+|.+++.+
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v  269 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence            35677899999999999999999999999876644

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.20  E-value=6.2e-05  Score=55.58  Aligned_cols=25  Identities=20%  Similarity=0.170  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .-++|+|+||+|||++++.++...+
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            3478999999999999999988766

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.19  E-value=0.00041  Score=58.07  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ....|..+++.|+||+|||++++.+++.++..++..
T Consensus        44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            445556778888899999999999999998776654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.19  E-value=0.00026  Score=61.03  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=28.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ++.-++|+|+||+|||++++.++..++..++.+
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            456789999999999999999999998876644

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.18  E-value=0.00041  Score=58.80  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+++.++....++.++.|+|+|||||||+.+.|...+
T Consensus        43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4567777777888999999999999999999998654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.17  E-value=0.00027  Score=56.01  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=27.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC-----cceeehHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGD   64 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~   64 (245)
                      ++..++|+|+||+||||+++.+++.++     +.+++..+
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~   90 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI   90 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            456789999999999999999998764     34555543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.16  E-value=0.00026  Score=63.47  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=28.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+..++|+||||+||||+++.+++.+|+.++..
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            346889999999999999999999999877654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.16  E-value=0.0003  Score=62.36  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=28.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .|.-++|+||||+|||++++.++...+.+++.+
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            344589999999999999999999998776644

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.15  E-value=0.00028  Score=58.94  Aligned_cols=31  Identities=42%  Similarity=0.613  Sum_probs=26.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      .+..++|+|++|+|||++++.+++.++..++
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            4456789999999999999999999886654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.15  E-value=0.00038  Score=56.80  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=27.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++  ..++-+++|+||+||||||+.+.|+..+
T Consensus        16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            445555  4567799999999999999999998765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00056  Score=53.20  Aligned_cols=23  Identities=30%  Similarity=0.713  Sum_probs=21.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++|+|++|+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999875

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.13  E-value=0.0003  Score=61.90  Aligned_cols=40  Identities=25%  Similarity=0.547  Sum_probs=28.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh-Ccce--eehHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-CLCH--LATGDMLRS   68 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-~~~~--i~~~~li~~   68 (245)
                      .++.-++|+||||+|||++++.++..+ +..+  ++..+++..
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            345678999999999999999999998 6554  454455443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.11  E-value=0.00034  Score=53.28  Aligned_cols=25  Identities=20%  Similarity=0.032  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+++.|.|++||||||++..|...+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4588999999999999999998875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.11  E-value=0.00048  Score=54.26  Aligned_cols=29  Identities=14%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ...+..++|+|++|+||||+++.+++.++
T Consensus        42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           42 GRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            33445789999999999999999998874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.09  E-value=0.00064  Score=56.78  Aligned_cols=27  Identities=22%  Similarity=0.474  Sum_probs=24.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+|+|+|++||||||++..|+..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            457799999999999999999999776

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.06  E-value=0.00059  Score=58.25  Aligned_cols=28  Identities=25%  Similarity=0.295  Sum_probs=24.2

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...+..++|+|+||+||||+++.+++.+
T Consensus        42 ~~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3445588999999999999999999876

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.06  E-value=0.001  Score=58.45  Aligned_cols=36  Identities=22%  Similarity=0.221  Sum_probs=28.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh-----Cc--ceeehHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY-----CL--CHLATGDML   66 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~-----~~--~~i~~~~li   66 (245)
                      +..++|+|+||+||||+++.++..+     +.  .+++...+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            5577899999999999999999876     43  455665543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.05  E-value=0.00023  Score=57.23  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=27.8

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+||+||||||+.+.|+-.+
T Consensus        22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3445566788899999999999999999998544

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.04  E-value=0.0005  Score=58.53  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=24.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...+..++|+|+||+||||+++.+++.+
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3456688999999999999999999887

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.03  E-value=0.00029  Score=54.18  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      +|+|+|++||||||+|..|+.. +.+
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~   25 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQ   25 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCC
Confidence            3789999999999999999977 654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.02  E-value=0.00078  Score=55.83  Aligned_cols=25  Identities=20%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++|+|+||+||||+++.+++.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3478999999999999999999987

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.02  E-value=0.00041  Score=56.36  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +..++|+|+||+|||++++.+++..+
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            34578999999999999999998764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.01  E-value=0.0005  Score=57.37  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+++|.|+.||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457799999999999999999999766

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.00047  Score=57.91  Aligned_cols=28  Identities=21%  Similarity=0.135  Sum_probs=24.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+|..++|+||||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3566788999999999999999999888

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.01  E-value=0.00051  Score=57.35  Aligned_cols=26  Identities=23%  Similarity=0.420  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+++|.|++||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57799999999999999999999766

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.01  E-value=0.00068  Score=60.35  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=29.0

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..++.-++|+|+||+|||++++.++..++.+++..
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v  269 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            34556789999999999999999999998765543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.00  E-value=0.00033  Score=55.37  Aligned_cols=28  Identities=18%  Similarity=0.160  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .-+++-+++|.|++||||||+++.|+..
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456789999999999999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.00  E-value=0.00089  Score=57.08  Aligned_cols=37  Identities=30%  Similarity=0.387  Sum_probs=28.4

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++........++++|+|+|+||+||||++..|+..+
T Consensus        67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3344443344567899999999999999999998775

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.99  E-value=0.00044  Score=53.66  Aligned_cols=24  Identities=33%  Similarity=0.571  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+++|+|++||||||+.+.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            468999999999999999999876

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.97  E-value=0.00079  Score=57.19  Aligned_cols=28  Identities=14%  Similarity=0.331  Sum_probs=24.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...+..++|+|++|+||||+++.+++.+
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4556688999999999999999999877

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.97  E-value=0.00064  Score=53.63  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .-+++.+++|.|++||||||+++.++..+
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34567799999999999999999998543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.97  E-value=0.00054  Score=61.84  Aligned_cols=31  Identities=29%  Similarity=0.412  Sum_probs=27.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ++..++|+||||+||||+++.++..++..++
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            5778999999999999999999999876544

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.97  E-value=0.00047  Score=61.48  Aligned_cols=31  Identities=29%  Similarity=0.546  Sum_probs=26.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      |.-++|+||||+||||+++.++...+.+++.
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~   94 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT   94 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4448999999999999999999988765543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.95  E-value=0.00053  Score=53.74  Aligned_cols=36  Identities=22%  Similarity=0.111  Sum_probs=27.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC--cceeeh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLAT   62 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~   62 (245)
                      .-+++.+++|.|++||||||++..|+...+  ..+++.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            345677999999999999999999986333  334444

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.94  E-value=0.00056  Score=56.58  Aligned_cols=35  Identities=11%  Similarity=0.156  Sum_probs=28.1

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+...-.++-+++|.|+|||||||+++.++..+
T Consensus        25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34444456778899999999999999999988654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.94  E-value=0.00057  Score=52.27  Aligned_cols=25  Identities=20%  Similarity=0.108  Sum_probs=22.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++++|.|++||||||+++.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4588999999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.92  E-value=0.00036  Score=61.88  Aligned_cols=28  Identities=21%  Similarity=0.393  Sum_probs=25.0

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++.+|+|+|++||||||+++.|+..+
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            4568899999999999999999998765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.92  E-value=0.00025  Score=56.52  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=27.5

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444556678899999999999999999998544

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.92  E-value=0.0007  Score=59.61  Aligned_cols=31  Identities=32%  Similarity=0.412  Sum_probs=27.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..++|+|+||+||||+++.+++.++..++..
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            4688999999999999999999998766544

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.91  E-value=0.00048  Score=55.36  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=28.4

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+-.++.+++|+|++||||||+.+.|+-.+
T Consensus        21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34445566788899999999999999999998544

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.88  E-value=0.00075  Score=57.64  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=24.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+|+|+|+.||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            467899999999999999999999766

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.87  E-value=0.00032  Score=57.73  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+-.++-+++|+||.||||||+.+.|+-.+
T Consensus        24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            34455566788899999999999999999998544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.86  E-value=0.00055  Score=55.91  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=28.0

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445566788899999999999999999998554

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.85  E-value=0.00071  Score=52.17  Aligned_cols=25  Identities=36%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+++++|++||||||++-.++..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999987666554

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.85  E-value=0.0014  Score=55.85  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++|+|++|+||||+++.++..+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999887

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.85  E-value=0.0011  Score=56.17  Aligned_cols=37  Identities=27%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.++.....++.+|+|+|++|+||||+++.|+..+
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3445555566778899999999999999999998654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.84  E-value=0.00058  Score=55.07  Aligned_cols=35  Identities=29%  Similarity=0.596  Sum_probs=29.0

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44455666788899999999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.83  E-value=0.00036  Score=57.11  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=27.5

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|+|++||||||+.+.|+-.+
T Consensus        28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3344555778899999999999999999998544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.83  E-value=0.00033  Score=59.98  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +.++....++.+++|.|++||||||+.+.|...+.
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            55555566777999999999999999999997763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.83  E-value=0.00037  Score=56.42  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|+|++||||||+.+.|+-.+
T Consensus        26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4445566778899999999999999999998654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.82  E-value=0.00062  Score=55.64  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=27.9

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3444556788899999999999999999998654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.82  E-value=0.0011  Score=56.02  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=22.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+. ++|+||+|+||||+++.|+..+
T Consensus        35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           35 DLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            3344 8999999999999999999854

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.82  E-value=0.00045  Score=56.22  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=27.9

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444566788899999999999999999998554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.82  E-value=0.00055  Score=56.05  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=27.3

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.
T Consensus        37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            334455677889999999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.81  E-value=0.00041  Score=56.47  Aligned_cols=34  Identities=32%  Similarity=0.387  Sum_probs=27.8

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445556778899999999999999999998554

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.81  E-value=0.00065  Score=55.76  Aligned_cols=35  Identities=34%  Similarity=0.628  Sum_probs=28.7

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+-.++-+++|+|++||||||+.+.|+-.+
T Consensus        35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34455566788899999999999999999998654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.81  E-value=0.0012  Score=55.12  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=28.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC----c--ceeehHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC----L--CHLATGDMLRS   68 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~----~--~~i~~~~li~~   68 (245)
                      +..++|+|+||+|||+++..++..+.    .  .++++.+++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~  195 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID  195 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence            56789999999999999999987553    3  34666665543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.80  E-value=0.001  Score=50.94  Aligned_cols=29  Identities=21%  Similarity=0.341  Sum_probs=25.0

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      |...+...|+|+|.+|+||||+.++|...
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            44566789999999999999999999865

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.80  E-value=0.00057  Score=64.20  Aligned_cols=34  Identities=29%  Similarity=0.558  Sum_probs=29.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .+|.-++|+||||+|||.+++++|...+.++++.
T Consensus       509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v  542 (806)
T 3cf2_A          509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISI  542 (806)
T ss_dssp             CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence            4566789999999999999999999999887754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.79  E-value=0.00079  Score=54.24  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=26.4

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.+ -+++|.|+.||||||+.+.|+-.+
T Consensus        16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            344455566 799999999999999999998544

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.79  E-value=0.00068  Score=55.27  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=28.6

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+-.++.+++|+|+.||||||+.+.|+-.+
T Consensus        36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34455566788899999999999999999998654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.79  E-value=0.0014  Score=55.13  Aligned_cols=23  Identities=30%  Similarity=0.703  Sum_probs=21.2

Q ss_pred             EEEECCCCCChhHHHHHHHhHhC
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ++|+|+||+||||+++.+++.++
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.79  E-value=0.00077  Score=50.77  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=21.8

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..+...|+|+|.+||||||+.++|..
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHh
Confidence            34567899999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.78  E-value=0.00069  Score=53.35  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .++-+++|.|+.||||||+.+.|+-.
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35668999999999999999999853

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.0011  Score=50.72  Aligned_cols=26  Identities=19%  Similarity=0.457  Sum_probs=22.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+.+.|+|+|++||||||+.+.|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45679999999999999999999854

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.77  E-value=0.00059  Score=54.94  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=27.6

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444555678899999999999999999998654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.77  E-value=0.00083  Score=54.41  Aligned_cols=33  Identities=21%  Similarity=0.426  Sum_probs=27.2

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.
T Consensus        20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344455667889999999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.77  E-value=0.00061  Score=53.93  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=27.3

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444555677899999999999999999998544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.77  E-value=0.00096  Score=59.05  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++|+|+||+|||++++.|+..+
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999986

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.76  E-value=0.0015  Score=57.18  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=23.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +|.+|+|+|++||||||++..|+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999998766

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.76  E-value=0.001  Score=52.98  Aligned_cols=29  Identities=21%  Similarity=0.059  Sum_probs=23.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++.+++++|+||+||||.+-.++..+
T Consensus         8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A            8 SKKIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             ---CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            33567899999999999999998888777

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.76  E-value=0.00074  Score=53.78  Aligned_cols=27  Identities=11%  Similarity=0.075  Sum_probs=23.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      -+++.+++|.|++||||||++..|+..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            356779999999999999999999873

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.76  E-value=0.00061  Score=54.45  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=27.7

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++.+++|.|+.||||||+.+.|+-.+
T Consensus        25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444555678899999999999999999998654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.75  E-value=0.00057  Score=57.38  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=24.7

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      -++|+|+||+|||++++.++..++..++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            5789999999999999999999876544

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.74  E-value=0.001  Score=51.94  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .-+|+++|+|+||||||+++..+..
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~   27 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMA   27 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHH
Confidence            3467999999999999999887643

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.73  E-value=0.001  Score=55.27  Aligned_cols=27  Identities=30%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+|+|+|++||||||++..|+..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357799999999999999999998655

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.72  E-value=0.002  Score=54.17  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=24.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+|+|+|++|+||||++..|+..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467799999999999999999998766

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.71  E-value=0.0005  Score=56.71  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3444555778899999999999999999998654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.71  E-value=0.00084  Score=50.62  Aligned_cols=29  Identities=28%  Similarity=0.322  Sum_probs=24.7

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      |...+...|+|.|.+|+||||+.++|...
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44566789999999999999999999753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.71  E-value=0.00042  Score=52.85  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+++|+|++||||||+++.|...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998776

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.71  E-value=0.00085  Score=54.88  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34455566788899999999999999999998554

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.71  E-value=0.00066  Score=57.93  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=27.3

Q ss_pred             HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+..++-+++|+||+||||||+.+.|+--.
T Consensus        22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            344556778899999999999999999998543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.69  E-value=0.00084  Score=54.38  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=27.6

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+|+.||||||+.+.|+-.+
T Consensus        17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3444556778899999999999999999998544

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.69  E-value=0.002  Score=54.35  Aligned_cols=22  Identities=36%  Similarity=0.738  Sum_probs=20.7

Q ss_pred             EEEECCCCCChhHHHHHHHhHh
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++|+||||+||||+++.++..+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999875

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.68  E-value=0.00094  Score=50.88  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=27.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      +.-++|.|++|+||||++..|.+ .|+.+++.|.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~   48 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID-RGHQLVCDDV   48 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCE
Confidence            45689999999999999999987 4888777653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.68  E-value=0.0014  Score=49.83  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=26.2

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.....+.....|+|.|.+|+||||+.++|...
T Consensus         7 ~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A            7 RKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             HHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             HHHhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence            334444567789999999999999999998753

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.67  E-value=0.00079  Score=57.89  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=27.8

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|+||+||||||+.+.|+--+
T Consensus        20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            3444566778899999999999999999998544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.67  E-value=0.0013  Score=49.70  Aligned_cols=29  Identities=17%  Similarity=0.082  Sum_probs=22.5

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      |+..+...|+|.|.+|+||||+.++|...
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            44566789999999999999999998753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.67  E-value=0.00088  Score=50.39  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=22.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...+...|+|.|.+|+||||+.++|..
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhc
Confidence            445567999999999999999999863

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.66  E-value=0.00083  Score=57.36  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=27.8

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus        20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            3445566778899999999999999999998544

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.66  E-value=0.0021  Score=54.53  Aligned_cols=30  Identities=13%  Similarity=0.262  Sum_probs=25.2

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ...+..++|+|++|+||||+++.+++.++.
T Consensus        35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            344557899999999999999999998854

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.64  E-value=0.0013  Score=50.06  Aligned_cols=26  Identities=31%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .++..|+|.|++|+||||+.++|...
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999853

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.64  E-value=0.00094  Score=54.20  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|.|+.||||||+.+.|+-.+
T Consensus        22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4444556778899999999999999999998654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.64  E-value=0.0012  Score=49.63  Aligned_cols=27  Identities=22%  Similarity=0.387  Sum_probs=23.1

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.+...|+|.|.+|+||||+.++|...
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            345678999999999999999999854

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.63  E-value=0.00095  Score=57.04  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=25.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ...++|+|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6789999999999999999999877543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.00088  Score=57.27  Aligned_cols=34  Identities=32%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus        20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            3445566778899999999999999999998544

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.62  E-value=0.0013  Score=56.48  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=24.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++-+++|+|++||||||+.+.|+..+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3566789999999999999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.62  E-value=0.0013  Score=57.44  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=27.6

Q ss_pred             HHHhccCCCCCcE--EEEECCCCCChhHHHHHHHhH
Q 025970           21 LRRFKCSSKPDKR--LVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        21 ~~~~~~~~~~~~~--i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +..++.+.+++.+  ++|+|++||||||+.+.|+..
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            4556667777777  999999999999999999853

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.61  E-value=0.0021  Score=53.34  Aligned_cols=23  Identities=39%  Similarity=0.733  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++|+|+||+||||+++.+++.+
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            38999999999999999999886

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.60  E-value=0.0014  Score=55.75  Aligned_cols=27  Identities=33%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ....+|+|+|+|||||||+.+.|...+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            347799999999999999999998654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.60  E-value=0.0012  Score=49.34  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|.|++|+||||+.++|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999999974

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.60  E-value=0.0025  Score=52.76  Aligned_cols=22  Identities=32%  Similarity=0.736  Sum_probs=20.8

Q ss_pred             EEEECCCCCChhHHHHHHHhHh
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++|+|+||+|||++++.+++.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHh
Confidence            8999999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.60  E-value=0.00096  Score=57.03  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=27.8

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-.++-+++|+|++||||||+.+.|+--+
T Consensus        45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3444566788899999999999999999998544

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.60  E-value=0.00096  Score=57.25  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=27.7

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus        28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3444556778899999999999999999998544

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.59  E-value=0.00081  Score=57.32  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=28.3

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+..++-+++|.||+||||||+.+.|+-.+
T Consensus        31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34455566778899999999999999999998543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.58  E-value=0.0018  Score=52.83  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=24.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ++...++|.||||+|||+++..|+..++.
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            33446899999999999999999987544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.57  E-value=0.0013  Score=48.74  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=21.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ....|+|.|.+||||||+.+.|..
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHc
Confidence            467899999999999999999975

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.55  E-value=0.0005  Score=58.08  Aligned_cols=36  Identities=25%  Similarity=0.254  Sum_probs=29.1

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++....++.+++|.|++||||||+.+.|+..+
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            455555555566789999999999999999998766

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.54  E-value=0.0015  Score=57.18  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +|.+|+|.|++||||||++..|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.54  E-value=0.0015  Score=48.28  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +..|+|.|.+|+||||+.++|..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.53  E-value=0.0014  Score=49.53  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++..|+|+|.+|+||||+.++|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999854

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.53  E-value=0.0018  Score=55.30  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=21.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      -+++|+||+||||||+.+.|...+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            389999999999999999988665

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.52  E-value=0.0028  Score=59.44  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=27.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh----------CcceeehH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY----------CLCHLATG   63 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~----------~~~~i~~~   63 (245)
                      .+..++|+|+||+|||++++.|++.+          +..++..+
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~  243 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD  243 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence            33457899999999999999999997          66666553

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.52  E-value=0.0013  Score=50.55  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...|+|+|++||||||+.++|+..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999854

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.52  E-value=0.002  Score=48.37  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .++..|+|.|.+|+||||+.++|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999999975

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.52  E-value=0.0035  Score=52.79  Aligned_cols=41  Identities=12%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      +..+...+. ....+..++|+|++|+|||++++.|++.+...
T Consensus        11 ~~~l~~~i~-~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           11 FEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             HHHHHHHHH-TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHH-cCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            334444333 44556688999999999999999999988643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.0017  Score=49.84  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=22.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+.+...|+|+|.+|+||||+.++|...
T Consensus        24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           24 AKSAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456789999999999999999999853

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.51  E-value=0.0015  Score=50.42  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...|+|+|++||||||+.++|...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            357899999999999999999854

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.51  E-value=0.0006  Score=56.98  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=28.4

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++...+++.+++|+|++||||||+.+.|+..+
T Consensus        70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            34444556778899999999999999999998655

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.51  E-value=0.0018  Score=48.58  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=22.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|.|.+|+||||+.++|...
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999999753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.51  E-value=0.0014  Score=52.22  Aligned_cols=35  Identities=23%  Similarity=0.105  Sum_probs=26.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh-----Ccceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~   62 (245)
                      -+++.+++|.|+|||||||++..++...     +..+++.
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~   59 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL   59 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            3567799999999999999988876543     3445554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.51  E-value=0.0017  Score=50.87  Aligned_cols=27  Identities=19%  Similarity=0.192  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+.|+|+|.+||||||++.+|+..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            356689999999999999999998775

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.51  E-value=0.0017  Score=47.87  Aligned_cols=23  Identities=22%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.|+|.|.+|+||||+.++|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999854

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.51  E-value=0.00099  Score=57.18  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=27.0

Q ss_pred             HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+..++-+++|.||+||||||+.+.|+--+
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            344555677899999999999999999998543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.50  E-value=0.0014  Score=49.67  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..+...|+|.|.+|+||||+.++|...
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcC
Confidence            345678999999999999999998743

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.50  E-value=0.0013  Score=54.59  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=25.4

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..-.++.+++|+|+.||||||+.+.|+-.+
T Consensus        59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           59 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            344677899999999999999999998654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.49  E-value=0.00075  Score=57.40  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=28.4

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus        16 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            34455566778899999999999999999998544

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.49  E-value=0.0033  Score=52.07  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=20.8

Q ss_pred             EEEECCCCCChhHHHHHHHhHh
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++|+|++|+||||+++.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999999875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.49  E-value=0.0016  Score=50.34  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=22.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..+...|+|+|.+|+||||+.++|...
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence            445678999999999999999999754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.49  E-value=0.0034  Score=52.14  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=22.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+|++.|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999766

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0018  Score=57.08  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=27.1

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++....++.+++|+|+.||||||+++.|+..+
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34466788899999999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.46  E-value=0.0024  Score=53.48  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=28.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      ..++|+|++|+||||+++.+++..+..+++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            588999999999999999999988877777643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.46  E-value=0.0016  Score=47.98  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...|++.|.+|+||||+.+.|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999998753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.46  E-value=0.0012  Score=49.94  Aligned_cols=25  Identities=12%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|.|.+|+||||+.++|..
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHc
Confidence            4567899999999999999999974

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.46  E-value=0.0012  Score=57.01  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=27.7

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++.++.+..++-+++|.||+||||||+.+.|+-.
T Consensus        37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            3444456678889999999999999999999853

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.46  E-value=0.002  Score=60.36  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      .++|+|+||+|||++++.|++.++..++
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~  517 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELL  517 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence            6899999999999999999999986544

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.45  E-value=0.0015  Score=53.61  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++|+|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.44  E-value=0.0015  Score=53.27  Aligned_cols=31  Identities=26%  Similarity=0.488  Sum_probs=25.8

Q ss_pred             HhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .++.+-. +-+++|.|+.||||||+.+.|+-.
T Consensus        23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence            3445556 889999999999999999999854

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.44  E-value=0.0023  Score=47.56  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|.|.+|+||||+.++|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999964

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.44  E-value=0.0014  Score=53.63  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.+++|.|++||||||++..++..
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46678999999999999999998853

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.44  E-value=0.0011  Score=55.75  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=21.7

Q ss_pred             EEEECCCCCChhHHHHHHHhHhC
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ++|+|+||+|||++++.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            88999999999999999999876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.43  E-value=0.002  Score=50.64  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.++|+|+|.+||||||++.+|+...
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998774

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=96.43  E-value=0.04  Score=51.33  Aligned_cols=25  Identities=16%  Similarity=0.409  Sum_probs=19.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ..+..|+|+||   ||+|+.++|.+.+.
T Consensus       529 ~~~r~vvl~GP---~K~tl~~~L~~~~~  553 (721)
T 2xkx_A          529 HYARPIIILGP---TKDRANDDLLSEFP  553 (721)
T ss_pred             CCCCEEEEECC---CHHHHHHHHHHhCc
Confidence            34557789998   49999999998774

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.43  E-value=0.0018  Score=47.85  Aligned_cols=25  Identities=16%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +...|+|.|.+|+||||+.++|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3568999999999999999999753

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.43  E-value=0.0028  Score=49.11  Aligned_cols=28  Identities=21%  Similarity=0.111  Sum_probs=24.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++.+++++|++||||||.+-.++.++
T Consensus         5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            5 KDHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3457899999999999999998888877

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.43  E-value=0.0019  Score=48.28  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=21.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...|+|.|.+|+||||+.++|..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            456899999999999999999874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.43  E-value=0.0011  Score=51.57  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...++..|+|+|++||||||+.+.|..
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            456778999999999999999998863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.42  E-value=0.0018  Score=49.47  Aligned_cols=28  Identities=25%  Similarity=0.275  Sum_probs=23.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...+...|+|+|.+|+||||+.++|...
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            4455679999999999999999998753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.42  E-value=0.00097  Score=59.68  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=27.4

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..+......+..++|+|++||||||+.+.|...+
T Consensus       249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            334444444556679999999999999999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.42  E-value=0.0022  Score=48.50  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=23.0

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..+...|+|+|.+|+||||+.++|...
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            345678999999999999999998843

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.41  E-value=0.0016  Score=49.66  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|++|+||||+.++|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999999975

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.40  E-value=0.0027  Score=52.90  Aligned_cols=27  Identities=19%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+..++|+|+||+|||++++.++...
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            344567899999999999999999854

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.39  E-value=0.0023  Score=48.91  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=22.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .....|+|+|.+|+||||+.+.|..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999999974

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.38  E-value=0.0018  Score=50.01  Aligned_cols=28  Identities=14%  Similarity=0.204  Sum_probs=22.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...+...|+|+|.+|+||||+.++|...
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3356789999999999999999999853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.38  E-value=0.0024  Score=55.59  Aligned_cols=28  Identities=32%  Similarity=0.475  Sum_probs=24.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .++-+++|+||+||||||+.+.|...++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            4556899999999999999999988763

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.38  E-value=0.002  Score=47.66  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|.|.+|+||||+.++|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46799999999999999999975

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.38  E-value=0.0018  Score=49.16  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.+...|+|+|.+|+||||+.++|...
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            455678999999999999999999853

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.37  E-value=0.0025  Score=49.74  Aligned_cols=27  Identities=19%  Similarity=0.417  Sum_probs=23.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+.|+|+|++|+||||+..+|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.35  E-value=0.0022  Score=54.87  Aligned_cols=42  Identities=24%  Similarity=0.180  Sum_probs=23.8

Q ss_pred             hhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           14 VDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+..+..++.-....++...|+|.|.+||||||+++.+.=.+
T Consensus        16 s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~   57 (362)
T 1zcb_A           16 SKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIH   57 (362)
T ss_dssp             ---------------CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHh
Confidence            334444444434455778899999999999999999986444

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.34  E-value=0.0019  Score=47.96  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...|+|.|.+|+||||+.++|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999998743

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.34  E-value=0.00081  Score=57.31  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=27.9

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus        22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3445566778899999999999999999998543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.33  E-value=0.0018  Score=55.13  Aligned_cols=29  Identities=17%  Similarity=0.142  Sum_probs=25.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .-+++.++.|+|++||||||++..|+...
T Consensus       127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          127 GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34677899999999999999999999776

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.33  E-value=0.002  Score=48.83  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +...|+|.|.+|+||||+.++|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999743

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.33  E-value=0.0022  Score=48.73  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|.+|+||||+.++|..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            4467899999999999999999975

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.33  E-value=0.0021  Score=47.81  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +...|+|.|.+|+||||+.++|...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.32  E-value=0.002  Score=50.16  Aligned_cols=28  Identities=18%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .......|+|+|.+|+||||+.++|...
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3456779999999999999999999853

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.31  E-value=0.0022  Score=47.47  Aligned_cols=22  Identities=27%  Similarity=0.616  Sum_probs=19.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      ...|+|.|.+|+||||+.++|.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHC
T ss_pred             eEEEEEECCCCCCHHHHHHHHc
Confidence            3579999999999999999885

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.31  E-value=0.0017  Score=49.12  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      +.++..|+|.|.+|+||||+.++|.
T Consensus        15 ~~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           15 SNKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHh
Confidence            3678899999999999999999886

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.30  E-value=0.0018  Score=48.55  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=21.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +.+...|+|+|.+|+||||+.++|..
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHc
Confidence            33457899999999999999999874

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.30  E-value=0.0044  Score=55.22  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+|+|+|++||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999665

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.29  E-value=0.0024  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999975

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.28  E-value=0.0029  Score=48.12  Aligned_cols=26  Identities=12%  Similarity=0.242  Sum_probs=22.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...+.|+|.|.+|+||||+.++|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            34568999999999999999998754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.27  E-value=0.0017  Score=59.01  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=30.8

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+-+++.+++|.|++||||||+.+.|+..+
T Consensus       358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            556666677888899999999999999999998665

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.27  E-value=0.0021  Score=53.88  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=25.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC--cceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC--LCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~   62 (245)
                      ++..++|.|+||+||||++..++...|  ..++++
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            445679999999999999999987533  346665

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.27  E-value=0.0023  Score=50.11  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=22.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc
Confidence            4567999999999999999999874

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.27  E-value=0.0017  Score=48.19  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...|+|.|.+|+||||+.++|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999975

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.25  E-value=0.0032  Score=47.98  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=22.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..+...|+|+|.+|+||||+.++|..
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence            34567999999999999999988874

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.24  E-value=0.0034  Score=50.60  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+..++++.|.+|+||||++..|+..+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999998654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.24  E-value=0.0025  Score=47.28  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            46799999999999999999974

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.24  E-value=0.0023  Score=47.52  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +...|+|.|.+|+||||+.++|...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4568999999999999999999754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.24  E-value=0.0021  Score=49.65  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=22.8

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...+......|+|+|.+|+||||+.++|..
T Consensus        18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             ----CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence            333445678999999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.23  E-value=0.0024  Score=48.62  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++..|+|+|.+|+||||+.+.|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            4568999999999999999999853

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.23  E-value=0.0024  Score=55.90  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=23.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +|.+|+|+|++|+||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999876

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.22  E-value=0.0031  Score=48.58  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=21.7

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..+...|+|+|.+|+||||+.++|...
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            355789999999999999999999753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.21  E-value=0.0041  Score=54.55  Aligned_cols=36  Identities=14%  Similarity=0.164  Sum_probs=31.3

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +++.+ ..-.++-++.|+|++||||||+.+.|+....
T Consensus       147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            56667 6778888999999999999999999998763

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.21  E-value=0.0029  Score=46.97  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999863

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.21  E-value=0.0024  Score=47.90  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...|+|.|.+|+||||+.++|..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999974

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.21  E-value=0.0028  Score=47.83  Aligned_cols=26  Identities=15%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+|+||||+.+.|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Confidence            35678999999999999999999853

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.21  E-value=0.0019  Score=49.19  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=22.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.+...|+|+|.+|+||||+.++|...
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcC
Confidence            345679999999999999999999753

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.18  E-value=0.0026  Score=54.16  Aligned_cols=27  Identities=22%  Similarity=0.196  Sum_probs=23.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.|.|+|||||||++..++...
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            467799999999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.18  E-value=0.0035  Score=47.94  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=22.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|.+|+||||+.++|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            4567899999999999999999975

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.18  E-value=0.0033  Score=48.82  Aligned_cols=28  Identities=18%  Similarity=0.071  Sum_probs=24.3

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      |...+...|+|.|.+|+||||+.++|..
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhc
Confidence            4556678999999999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.17  E-value=0.0033  Score=48.40  Aligned_cols=26  Identities=15%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+||||||+.+.|...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999998743

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.17  E-value=0.0028  Score=47.68  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|.|.+|+||||+.++|..
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHc
Confidence            4467899999999999999999874

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.16  E-value=0.0038  Score=47.41  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +.+|+|+.||||||+.++|.-.++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            789999999999999999976553

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.16  E-value=0.0033  Score=47.65  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|.|.+|+||||+.++|..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            5678999999999999999999874

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.16  E-value=0.0031  Score=48.94  Aligned_cols=26  Identities=15%  Similarity=0.132  Sum_probs=21.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..+...|+|.|.+|+||||+.++|..
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence            35678999999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.15  E-value=0.0029  Score=50.45  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=22.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+|+||||+.+.|...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            45679999999999999999999753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.15  E-value=0.0031  Score=47.21  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|.|.+|+||||+.++|...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34678999999999999999999753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.15  E-value=0.0027  Score=52.80  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=22.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +.+..+|+|+|.||+||||+.++|..
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHC
Confidence            44556899999999999999999984

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.15  E-value=0.0028  Score=49.05  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=21.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .....|+|+|.+|+||||+.++|..
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3467899999999999999999975

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.15  E-value=0.003  Score=47.47  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|.|.+|+||||+.++|...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999998753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.14  E-value=0.0031  Score=48.35  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|.|.+|+||||+.++|..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3455899999999999999999985

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.13  E-value=0.0031  Score=48.13  Aligned_cols=25  Identities=40%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ++...|+|+|.+|+||||+.++|..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHc
Confidence            4467899999999999999999974

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.13  E-value=0.0033  Score=53.56  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++.+++|+|++||||||+.+.|...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcc
Confidence            3558999999999999999999843

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.12  E-value=0.0021  Score=58.74  Aligned_cols=27  Identities=26%  Similarity=0.546  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .+..++|+|+||+||||+++.++..++
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            345789999999999999999998774

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.11  E-value=0.0034  Score=47.91  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .....|+|.|.+|+||||+.++|..
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHc
Confidence            3467899999999999999999975

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.09  E-value=0.0074  Score=52.79  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             HHHHHHHHhccC-------CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           16 MMTELLRRFKCS-------SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        16 ~~~~~~~~~~~~-------~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+++.+.+...       ..+|.+|+|.|++|+||||++..|+..+
T Consensus        78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            455555555421       1356789999999999999999998655

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.09  E-value=0.0017  Score=56.39  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+.+++|+|++||||||+.+.|..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            344899999999999999999986

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.08  E-value=0.0036  Score=47.75  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            45678999999999999999998753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.08  E-value=0.0033  Score=51.26  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+.|+|.|++||||||+.++|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.08  E-value=0.0042  Score=51.50  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=23.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+|+|+|++|+||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998766

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.07  E-value=0.0036  Score=47.21  Aligned_cols=24  Identities=17%  Similarity=0.155  Sum_probs=21.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...|+|.|.+|+||||+.++|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            456899999999999999999874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.07  E-value=0.0038  Score=47.46  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|.|.+|+||||+.++|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            5577999999999999999999984

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.07  E-value=0.0033  Score=48.08  Aligned_cols=26  Identities=35%  Similarity=0.376  Sum_probs=21.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +.....|+|+|.+|+||||+.++|..
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            34577999999999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.07  E-value=0.0035  Score=53.22  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +++.+ ..-.++-++.|+|++||||||+.+.|+....
T Consensus        61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45666 6677888999999999999999999998764

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.06  E-value=0.0016  Score=58.11  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .-++|+|+||+|||++++.|+...+
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            3678999999999999999998774

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.06  E-value=0.0057  Score=49.59  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=28.9

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.++.+.+.....+...|+|.|.+|+||||+...|...
T Consensus        22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            33444555544456789999999999999999999853

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.04  E-value=0.0046  Score=48.81  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=22.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567999999999999999999874

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.04  E-value=0.0045  Score=58.02  Aligned_cols=33  Identities=15%  Similarity=0.462  Sum_probs=26.6

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh---C--cceeehHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATGDM   65 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~~l   65 (245)
                      .++|+||||+|||++++.|++.+   +  +..+++..+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~  560 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY  560 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence            68999999999999999999986   2  445555444

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.03  E-value=0.004  Score=47.79  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            5678999999999999999999863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.03  E-value=0.0041  Score=51.75  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+++|.|++||||||+.+.|. ..
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            45688999999999999999998 54

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.03  E-value=0.004  Score=47.42  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=21.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc
Confidence            3457899999999999999999874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.02  E-value=0.0047  Score=45.57  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .|+|.|.+|+||||+.++|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999753

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.02  E-value=0.0037  Score=49.79  Aligned_cols=25  Identities=24%  Similarity=0.318  Sum_probs=21.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +++.+++|.|+||+|||++|..++.
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4677999999999999999987653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.02  E-value=0.0036  Score=56.34  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=25.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.++-+++|+|+.||||||+.+.|+-.+
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            55678899999999999999999998644

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.00  E-value=0.004  Score=47.53  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=21.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc
Confidence            3456899999999999999999975

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.00  E-value=0.0031  Score=48.02  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=22.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+...|+|.|.+|+||||+.+.|...+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence            346789999999999999998887654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.98  E-value=0.0044  Score=48.16  Aligned_cols=26  Identities=15%  Similarity=0.192  Sum_probs=21.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|.|.+|+||||+.++|...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999854

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.98  E-value=0.0033  Score=54.43  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      .++.++.|.|+|||||||++..|+
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHH
Confidence            467799999999999999999776

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.98  E-value=0.0023  Score=48.37  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=11.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .....|+|+|.+|+||||+.++|..
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             SEEEEEEEECCCCC-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999998874

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.98  E-value=0.0034  Score=50.95  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|.|.||+||||+.++|..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHC
Confidence            4567899999999999999999975

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.97  E-value=0.0038  Score=56.00  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=26.8

Q ss_pred             HHHHhcc-CCCCCcEEEEECCCCCChhHHHHHH
Q 025970           20 LLRRFKC-SSKPDKRLVLIGPPGSGKGTQSPVI   51 (245)
Q Consensus        20 ~~~~~~~-~~~~~~~i~i~G~~GsGKSt~~~~L   51 (245)
                      .++.++. .-+++-+++|.|++||||||+++.+
T Consensus        27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence            4556666 6678889999999999999999994

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.97  E-value=0.0031  Score=59.91  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++|+|+||+||||+++.|+..+
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999987

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.97  E-value=0.0042  Score=50.15  Aligned_cols=26  Identities=27%  Similarity=0.610  Sum_probs=22.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+||||||+..+|...
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.96  E-value=0.0038  Score=47.72  Aligned_cols=27  Identities=19%  Similarity=0.265  Sum_probs=22.8

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..+...|+|.|.+|+||||+.++|...
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            345679999999999999999998754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.96  E-value=0.0046  Score=47.50  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=21.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...+...|+|+|.+|+||||+.++|..
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHh
Confidence            345678999999999999999999874

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.96  E-value=0.0048  Score=52.27  Aligned_cols=26  Identities=15%  Similarity=0.008  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++.|.|+|||||||++..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            56779999999999999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.96  E-value=0.0067  Score=49.35  Aligned_cols=37  Identities=27%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             HHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           18 TELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        18 ~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+++............|+|+|.+|+||||+.+.|...
T Consensus        26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            3444444434456789999999999999999999753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.96  E-value=0.0039  Score=47.25  Aligned_cols=22  Identities=18%  Similarity=0.293  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|+|.+|+||||+.++|..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999975

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.95  E-value=0.0052  Score=50.96  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...+.|+|+|.+||||||+.++|...
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            45568999999999999999999743

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.95  E-value=0.0037  Score=47.32  Aligned_cols=26  Identities=15%  Similarity=0.302  Sum_probs=21.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999853

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.94  E-value=0.0032  Score=52.72  Aligned_cols=24  Identities=33%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      -++++|+|+.||||||+.+.|...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            458899999999999999999854

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.93  E-value=0.004  Score=48.04  Aligned_cols=32  Identities=31%  Similarity=0.418  Sum_probs=24.2

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...++. .++..|+|.|.+|+||||+.++|..
T Consensus        16 l~~~~~~-~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           16 LQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHTCT-TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHhhcc-CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4444443 3455789999999999999999863

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.93  E-value=0.0041  Score=52.87  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=27.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh-----CcceeehH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLATG   63 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~   63 (245)
                      +++.++.|.|+|||||||++..++...     ...++++.
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            456789999999999999999988654     34566653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.91  E-value=0.0039  Score=51.93  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=23.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .++++-+|+|+|.||+||||+.++|...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4566679999999999999999999753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.87  E-value=0.0043  Score=48.16  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=22.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .....|+|+|.+|+||||+.++|...
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhC
Confidence            34578999999999999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.86  E-value=0.004  Score=47.63  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            45678999999999999999999753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.0057  Score=55.85  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=25.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.++-+++|+|+.||||||+.+.|+-.+
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            44678899999999999999999998644

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.84  E-value=0.0038  Score=48.40  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .....|+|.|.+|+||||+.++|..
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhc
Confidence            3456899999999999999999975

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.83  E-value=0.0018  Score=59.12  Aligned_cols=35  Identities=34%  Similarity=0.630  Sum_probs=29.1

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++..-+++.+++|.|++||||||+.+.|+..+
T Consensus       371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            44455566788899999999999999999998665

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.83  E-value=0.0052  Score=46.74  Aligned_cols=25  Identities=28%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ....|+|+|.+|+||||+.++|...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4568999999999999999998753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.82  E-value=0.0055  Score=46.75  Aligned_cols=26  Identities=23%  Similarity=0.201  Sum_probs=22.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ....|+|+|.+|+||||+.++|....
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            45689999999999999999998643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.82  E-value=0.0057  Score=47.33  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .....|+|+|.+|+||||+...|..
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4567999999999999999999874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.81  E-value=0.0051  Score=58.45  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++|+|+||+|||++++.|+..+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.81  E-value=0.0055  Score=55.13  Aligned_cols=29  Identities=24%  Similarity=0.477  Sum_probs=25.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++-+++|+|+.||||||+.+.|+-.+
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34678899999999999999999998544

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.81  E-value=0.0067  Score=44.90  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      +.+.+|+|+.||||||+..++.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999998886

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.80  E-value=0.0054  Score=50.93  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+.+++|.|++||||||+.+.|+.
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHST
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcc
Confidence            356889999999999999999973

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.80  E-value=0.0078  Score=51.63  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             CCcEEEE--ECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVL--IGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i--~G~~GsGKSt~~~~La~~~   55 (245)
                      .+..++|  +|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4557777  9999999999999998775

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.79  E-value=0.0088  Score=47.10  Aligned_cols=28  Identities=18%  Similarity=-0.012  Sum_probs=24.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++.+.+++|++||||||.+-.++..+
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3567899999999999999998888777

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.78  E-value=0.0041  Score=47.38  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.76  E-value=0.0044  Score=47.73  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      ....|+|+|.+|+||||+.++|.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999885

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.76  E-value=0.0048  Score=51.77  Aligned_cols=27  Identities=19%  Similarity=0.183  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.|.|+|||||||++..++...
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            456799999999999999999998753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.74  E-value=0.0046  Score=47.48  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.+...|+|.|.+|+||||+.+.|...
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhc
Confidence            345779999999999999999987653

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.74  E-value=0.013  Score=49.06  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=25.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC--cceeeh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC--LCHLAT   62 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~--~~~i~~   62 (245)
                      ..++|+|++|+||||+++.+++..+  ..+++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            4889999999999999999998764  345554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.73  E-value=0.0062  Score=51.91  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=27.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh-----Ccceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY-----CLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~   62 (245)
                      +++.++.|.|+||+||||+|..|+...     .+.++++
T Consensus        61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            356789999999999999999988654     3456666

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.0057  Score=48.04  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=23.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .......|+|+|.+|+||||+.++|...
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcC
Confidence            3445678999999999999999999753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.71  E-value=0.0055  Score=46.90  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|+|.+|+||||+.++|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.69  E-value=0.0066  Score=46.67  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=21.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ....|+|+|.+|+||||+.++|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999999753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.68  E-value=0.0073  Score=52.66  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=23.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+|+|.|+.||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999776

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.68  E-value=0.0045  Score=47.05  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      .+...|+|.|.+|+||||+.++|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999999885

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.66  E-value=0.0051  Score=55.87  Aligned_cols=35  Identities=34%  Similarity=0.535  Sum_probs=28.4

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+-+++.+++|.|++||||||+.+.|+..+
T Consensus       359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            34444555778899999999999999999998665

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.64  E-value=0.0079  Score=56.28  Aligned_cols=26  Identities=19%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++..++|+|+||+|||++++.|+..+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            45567899999999999999999876

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.63  E-value=0.0093  Score=49.81  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++-+++|.|+||+||||++..++...
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567799999999999999999988654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.62  E-value=0.0063  Score=53.91  Aligned_cols=30  Identities=20%  Similarity=0.149  Sum_probs=24.7

Q ss_pred             ccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+..+ -+++|+|++||||||+.+.|+-.+
T Consensus        24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             EEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            344455 789999999999999999998655

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.62  E-value=0.0075  Score=46.28  Aligned_cols=24  Identities=38%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...|+|.|.+|+||||+.++|...
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999854

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=95.62  E-value=0.051  Score=45.17  Aligned_cols=87  Identities=17%  Similarity=0.157  Sum_probs=44.8

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcc-eeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLC-HLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~-~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  112 (245)
                      |||+||   ||+|+.++|.+.+.-. .++..  +          .+.    +.++..++-..+...+.       .++.+
T Consensus       148 vVl~GP---~k~~l~~~L~~~~P~~F~~~v~--~----------~r~----i~~~~fis~~~V~~vl~-------~Gk~~  201 (308)
T 3kfv_A          148 VVILGP---VADIAMQKLTAEMPDQFEIAET--V----------SRT----DSPSKIIKLDTVRVIAE-------KDKHA  201 (308)
T ss_dssp             EEEEST---THHHHHHHHHHHCTTTEEECCC--C----------------------CCCHHHHHHHHH-------TTCEE
T ss_pred             EEEeCc---cHHHHHHHHHHhCccccccccc--c----------ccc----ccCCCeecHHHHHHHHH-------CCCcE
Confidence            578899   7999999999887432 22211  0          000    34566665555544432       25578


Q ss_pred             EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecC-HHHHHHH
Q 025970          113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID-DSILEER  154 (245)
Q Consensus       113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~-~e~~~~R  154 (245)
                      |+|--+....+.   .    .....| ++||+..| .+++.+|
T Consensus       202 ILDId~QGa~~l---k----~~~~~p-i~IFI~PPS~eeL~~r  236 (308)
T 3kfv_A          202 LLDVTPSAIERL---N----YVQYYP-IVVFFIPESRPALKAL  236 (308)
T ss_dssp             EECCCHHHHHHH---H----HTTCCC-EEEEEEESCHHHHHHH
T ss_pred             EEEECHHHHHHH---H----hcCCCC-EEEEEeCCCHHHHHHH
Confidence            888543332222   2    122455 56666654 4556654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.60  E-value=0.006  Score=51.03  Aligned_cols=26  Identities=19%  Similarity=0.061  Sum_probs=23.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +++.++.|.|+|||||||+|..++..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999864

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.59  E-value=0.0063  Score=46.90  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ....|+|+|.+|+||||+.++|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3568999999999999999999853

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.0046  Score=47.21  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +...|+|+|.+|+||||+.++|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999854

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.57  E-value=0.007  Score=47.13  Aligned_cols=25  Identities=28%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            4457899999999999999999975

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.57  E-value=0.0085  Score=46.81  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            45679999999999999999999753

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.56  E-value=0.016  Score=51.02  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++|.|++|+||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78999999999999999988776

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.56  E-value=0.0079  Score=49.24  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...|+|.|.||+||||+.++|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999853

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.55  E-value=0.011  Score=51.97  Aligned_cols=27  Identities=15%  Similarity=0.255  Sum_probs=23.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++-+++|.|+||+||||++..++...
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            467799999999999999999887643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.53  E-value=0.0072  Score=48.97  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.|+|.|.|||||||+.+.|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            37899999999999999999754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.50  E-value=0.0087  Score=51.62  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=24.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ....+..+.|.|+||+||||+.++|..
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            445678999999999999999999987

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.49  E-value=0.0044  Score=48.47  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...+.|+|+|.+|+||||+.++|...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            45678999999999999999998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.49  E-value=0.0071  Score=46.70  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .....|+|.|.+|+||||+.++|..
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhh
Confidence            3457899999999999999999874

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=95.49  E-value=0.039  Score=48.62  Aligned_cols=32  Identities=9%  Similarity=-0.032  Sum_probs=23.8

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      .+..+..|+|+||+|+|   ++++|.+.+.-.+.+
T Consensus       220 ~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s  251 (468)
T 3shw_A          220 EAGFLRPVTIFGPIADV---AREKLAREEPDIYQI  251 (468)
T ss_dssp             CCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE
T ss_pred             cCCCCCEEEEECCCHHH---HHHHHHHhCCCceee
Confidence            34566778999999999   999988887533333

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.48  E-value=0.0082  Score=49.09  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...|+|+|.+||||||+.++|...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999999754

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.46  E-value=0.013  Score=46.58  Aligned_cols=34  Identities=15%  Similarity=0.061  Sum_probs=25.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATG   63 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~   63 (245)
                      ....|++.|++|+||||++-.++..+   |.  .++++|
T Consensus         5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D   43 (228)
T 2r8r_A            5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE   43 (228)
T ss_dssp             CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            35679999999999999987777654   54  344554

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.46  E-value=0.013  Score=48.01  Aligned_cols=26  Identities=12%  Similarity=0.174  Sum_probs=22.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...+.|+|+|.+|+||||+.++|...
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            34668999999999999999999754

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.45  E-value=0.009  Score=49.89  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=27.1

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      +.-++|.|++|+||||++..|.++ |+.+++.|
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD  175 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR-GHRLVADD  175 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence            567899999999999999999865 88777654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.45  E-value=0.0028  Score=52.89  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .++.+++|.|++||||||+.+.|..
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhcc
Confidence            3567999999999999999999873

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.42  E-value=0.0085  Score=54.72  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=25.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++-+++|+|+.||||||+.+.|+-.+
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            45678899999999999999999998544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.41  E-value=0.0073  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|+|++|+||||+.+.|..
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHhC
Confidence            45779999999999999999863

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.40  E-value=0.0038  Score=48.04  Aligned_cols=24  Identities=13%  Similarity=0.271  Sum_probs=6.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...|+|+|.+|+||||+.++|..
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~   42 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTS   42 (208)
T ss_dssp             EEEEEEEC----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            345899999999999999998874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.39  E-value=0.0077  Score=54.20  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=23.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++-+++|+|+.||||||+.+.|+-.+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998644

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=95.38  E-value=0.019  Score=51.95  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..+.+++|.|++|+||||++..++.
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Confidence            4466899999999999999998853

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.37  E-value=0.0095  Score=53.61  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++-+++|+|+.||||||+.+.|+-.+
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467799999999999999999998644

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.36  E-value=0.0076  Score=50.28  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=27.1

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      +.-++|.|++|+||||++-.|.+ .|+.+++-|.
T Consensus       147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~  179 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDA  179 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCE
Confidence            45689999999999999999975 5887776653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.32  E-value=0.011  Score=46.44  Aligned_cols=24  Identities=38%  Similarity=0.552  Sum_probs=21.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ....|+|+|.+|+||||+.++|..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.31  E-value=0.01  Score=54.24  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++-+++|+|+.||||||+.+.|+-.+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999998643

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.28  E-value=0.015  Score=48.44  Aligned_cols=24  Identities=13%  Similarity=-0.017  Sum_probs=22.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++.++|+||||+||||+++.|++.
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~   41 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEY   41 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            668899999999999999999975

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.27  E-value=0.012  Score=53.39  Aligned_cols=25  Identities=36%  Similarity=0.618  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+++|.|+||+||||++..+...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4588999999999999999988755

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.26  E-value=0.0055  Score=55.64  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+.+++.+++|.||+||||||+.+.|...+
T Consensus       358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3444455778899999999999999999988655

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.25  E-value=0.016  Score=49.13  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..+..++|+|++|+||||+.+.|+..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45779999999999999999999754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.23  E-value=0.01  Score=46.39  Aligned_cols=28  Identities=32%  Similarity=0.525  Sum_probs=22.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHH-HHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPV-IKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~-La~~~   55 (245)
                      +.+...|+|+|.+|+||||+.++ +...+
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            34567899999999999999998 54443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.19  E-value=0.012  Score=51.36  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .+..++|+|+||+||||+.++|...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC
Confidence            4579999999999999999999854

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.19  E-value=0.012  Score=49.00  Aligned_cols=25  Identities=32%  Similarity=0.586  Sum_probs=21.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ....|+|.|.+|+||||+.++|...
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	6e-38
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	1e-37
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	4e-37
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	6e-37
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	6e-32
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	1e-31
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	1e-31
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	1e-31
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	1e-29
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	2e-28
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	3e-28
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	1e-27
d1akya2	38	g.41.2.1 (A:131-168) Microbial and mitochondrial A	2e-17
d1s3ga2	35	g.41.2.1 (A:126-160) Microbial and mitochondrial A	5e-17
d2ak3a2	37	g.41.2.1 (A:125-161) Microbial and mitochondrial A	1e-16
d1zina2	35	g.41.2.1 (A:126-160) Microbial and mitochondrial A	4e-16
d1e4va2	35	g.41.2.1 (A:122-156) Microbial and mitochondrial A	6e-16
d1ak2a2	30	g.41.2.1 (A:147-176) Microbial and mitochondrial A	8e-15
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	4e-13
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-12
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	1e-10
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	3e-09
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	3e-09
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	7e-09
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	4e-08
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	1e-07
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	4e-06
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.001
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.002

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score =  128 bits (323), Expect = 6e-38
 Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 35/211 (16%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +VL+G PG+GKGTQ+  I ++Y   H++TGDM R+A+   T LG+KAK  MD+G LV D
Sbjct: 2   NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  C+ GF+LDGFPRTV QAE LD++L   G KI+ VLN  ++   L 
Sbjct: 62  EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELI 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            R+T                                     D    + +RLE    QT P
Sbjct: 122 ARLTAD-----------------------------------DNPDTVTNRLEVNMNQTAP 146

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           ++ +Y  K VL  ++ +K  K+V  ++  +L
Sbjct: 147 LLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 177

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  128 bits (322), Expect = 1e-37
 Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 33/212 (15%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+GPPG+GKGTQ+  + ++  +  ++TG++ R  +   T LG++AK  +D G+LV  
Sbjct: 2   RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           DL   ++D  +  P    GFILDG+PR+V QA+ L EMLE++GT ID VL F + + +L 
Sbjct: 62  DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+ GR                                R DDT  V+ +R++ +  +T P
Sbjct: 122 ERLKGRG-------------------------------RADDTDDVILNRMKVYRDETAP 150

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +++YY  +  L  + A     EV     + L 
Sbjct: 151 LLEYYRDQ--LKTVDAVGTMDEVFARALRALG 180

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  126 bits (318), Expect = 4e-37
 Identities = 74/213 (34%), Positives = 119/213 (55%), Gaps = 35/213 (16%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            LVL+G PG+GKGTQ+  I   Y + H++TGDM R+A+   TPLG++AK+ MD+G+LV D
Sbjct: 2   NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++ +GI+ + + K  C+ GF+LDGFPRTV QAE L+ ML   G K+D V++  +   +L 
Sbjct: 62  EVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLM 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           ER+T                                          + +RLE   KQ +P
Sbjct: 122 ERLTADDNE-----------------------------------ATVANRLEVNMKQMKP 146

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++D+Y +KG L  ++ E+  ++V  +++++L  
Sbjct: 147 LVDFYEQKGYLRNINGEQDMEKVFADIRELLGG 179

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score =  126 bits (317), Expect = 6e-37
 Identities = 93/212 (43%), Positives = 133/212 (62%), Gaps = 30/212 (14%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R VL+GPPG+GKGTQ+P +   +C+CHLATGDMLR+ VA+ + LG K K  MD G+LVSD
Sbjct: 5   RAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 64

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           ++V+ +I++ ++ P C+ GF+LDGFPRTV QAE LD+++EK+  K+D V+ F+I DS+L 
Sbjct: 65  EMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 124

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
            RITGR IH                               DD  + LK RLEA+H QT P
Sbjct: 125 RRITGRLIHS------------------------------DDNKKALKIRLEAYHTQTTP 154

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           +++YY+K+G+ + + A + P  V   +    S
Sbjct: 155 LVEYYSKRGIHSAIDASQTPDVVFASILAAFS 186

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (283), Expect = 6e-32
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 44/216 (20%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R++L+G P +GKGTQ+  I ++Y +  ++TGDMLR+AV + + LG +AK+ MD G+LV+D
Sbjct: 2   RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           +LV+ ++ + + +  C  GF+LDGFPRT+ QA+ + E     G  +D VL F + D ++ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +RI                                         + ++ RL  +H+ T P
Sbjct: 118 DRIVKDD-----------------------------------QEETVRKRLVEYHQMTAP 142

Query: 213 VIDYYAKKGVLAQLH-----AEKPPKEVTVEVQKVL 243
           +I YY+K+              KP  EV  +++K+L
Sbjct: 143 LIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 178

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  113 bits (282), Expect = 1e-31
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 32/218 (14%)

Query: 29  KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE 88
           K  K + ++G PGSGKGTQ   I  +Y   HL+TGD+LR+ V++ +  G    E M+KG+
Sbjct: 6   KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 65

Query: 89  LVSDDLVVGIIDQAMKK-PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID 147
           LV  + V+ ++  AM       KGF++DG+PR V Q E+ +  +     +   +L     
Sbjct: 66  LVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIG----QPTLLLYVDAG 121

Query: 148 DSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFH 207
              + +R+  R                                R DD  + +K RLE ++
Sbjct: 122 PETMTKRLLKRGETS---------------------------GRVDDNEETIKKRLETYY 154

Query: 208 KQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           K TEPVI +Y K+G++ +++AE    +V  +V   L +
Sbjct: 155 KATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT 192

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 1e-31
 Identities = 89/213 (41%), Positives = 125/213 (58%), Gaps = 39/213 (18%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R+VLIGPPG+GKGTQ+P +++ +   HLATGDMLRS +A  T LG++AK+ MD+G LVSD
Sbjct: 4   RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 63

Query: 93  DLVVGI-IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
           D++V +  D+    P+C+ GFILDGFPRT+ QAEKLD+ML++QGT ++K +   +DD +L
Sbjct: 64  DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 123

Query: 152 EERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTE 211
             RIT                                           K RL A+H QTE
Sbjct: 124 VARITNADAL--------------------------------------KKRLAAYHAQTE 145

Query: 212 PVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
           P++D+Y K G+ A + A +PP  V  ++   L 
Sbjct: 146 PIVDFYKKTGIWAGVDASQPPATVWADILNKLG 178

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 1e-31
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 33/218 (15%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIK-AKEAMDKGELV 90
             + ++G PG+GKGTQ   I ++Y   HL+ G++LR           +  ++ + +G++V
Sbjct: 2   LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV 61

Query: 91  SDDL----VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
             ++    +   +DQ M   + +  F++DGFPR     +  ++ ++ +   +  VL F  
Sbjct: 62  PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKA-DVSFVLFFDC 120

Query: 147 DDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAF 206
           ++ I  ER   R                                R DD  + L+ R++ +
Sbjct: 121 NNEICIERCLERGKSS---------------------------GRSDDNRESLEKRIQTY 153

Query: 207 HKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS 244
            + T+P+ID Y + G + ++ A K   EV  EV ++  
Sbjct: 154 LQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 191

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  107 bits (268), Expect = 1e-29
 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 30/218 (13%)

Query: 28  SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG 87
           SKP   + ++G PGSGKGTQ   I  ++   HL+ GD+LR    + +  G      +  G
Sbjct: 4   SKP-NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNG 62

Query: 88  ELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAID 147
           E+V   + V ++  A+      K F++DGFPR        +E ++        VL F   
Sbjct: 63  EIVPSIVTVKLLKNAIDANQG-KNFLVDGFPRNEENNNSWEENMKDF-VDTKFVLFFDCP 120

Query: 148 DSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFH 207
           + ++ +R+  R                                R DD  + +K R   F+
Sbjct: 121 EEVMTQRLLKRGESS---------------------------GRSDDNIESIKKRFNTFN 153

Query: 208 KQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
            QT+ VID+Y K   +  + A +   EV  +V+ +  S
Sbjct: 154 VQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  104 bits (260), Expect = 2e-28
 Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 43/219 (19%)

Query: 28  SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG 87
           + P  ++++ G P SGKGTQ  +IK +Y L H++ GD+LR+ +AA +  G +AKE M+KG
Sbjct: 1   ADP-LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKG 59

Query: 88  ELVSDDLVVGIIDQA-MKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
           +LV D++VV ++ +   +  + E G++LDG+PR+  Q       LE    + D  +   +
Sbjct: 60  QLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQ----AMALETLEIRPDTFILLDV 115

Query: 147 DDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAF 206
            D +L ER+                                         + +K RLE +
Sbjct: 116 PDELLVERVVFDDTE-----------------------------------EKVKLRLETY 140

Query: 207 HKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           ++  E ++  Y  + ++ ++  +     V  ++ ++L S
Sbjct: 141 YQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 177

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (259), Expect = 3e-28
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 36/226 (15%)

Query: 23  RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV-AAKTPLGIKAK 81
            F         + ++G PG+GKGTQ   +  +Y   HL+ GD+LR+    A +  G   K
Sbjct: 2   AFSPDQVS--VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIK 59

Query: 82  EAMDKGELVSDDLVVGIIDQAMKK--PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKID 139
             + +G++V  ++ + ++  A+     + +  F++DGFPR + QA   +  + +      
Sbjct: 60  NCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVES----K 115

Query: 140 KVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVL 199
            +L F   + I+ ER+  R                                R DD  + +
Sbjct: 116 FILFFDCPEDIMLERLLERGKTS---------------------------GRSDDNIESI 148

Query: 200 KSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           K R   F + + PVI+Y+  K  + ++  ++  ++V  +VQ  +  
Sbjct: 149 KKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 194

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score =  102 bits (254), Expect = 1e-27
 Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 44/213 (20%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           R  ++G PGSGKGT S  I   + L HL++GD+LR  +   T +G+ AK  +D+G+L+ D
Sbjct: 8   RAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
           D++  ++   +K    +  ++LDGFPRT+ QA         +  +ID V+N  +   +++
Sbjct: 68  DVMTRLVLHELKNL-TQYNWLLDGFPRTLPQA-----EALDRAYQIDTVINLNVPFEVIK 121

Query: 153 ERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEP 212
           +R+T R                                      + +  RL+A+  QTEP
Sbjct: 122 QRLTDRP-------------------------------------ETVVKRLKAYEAQTEP 144

Query: 213 VIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
           V++YY KKGVL      +   ++   V   L +
Sbjct: 145 VLEYYRKKGVLETFSGTE-TNKIWPHVYAFLQT 176

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 38

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.3 bits (175), Expect = 2e-17
 Identities = 27/38 (71%), Positives = 28/38 (73%)

Query: 157 GRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDD 194
           GR IHPASGRSYH  F PPK    DDVTGE L+QR DD
Sbjct: 1   GRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDD 38

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]} Length = 35

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

 Score = 70.0 bits (172), Expect = 5e-17
 Identities = 17/35 (48%), Positives = 18/35 (51%)

Query: 157 GRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191
           GR I    G SYH  F PP+V G  D  G  L QR
Sbjct: 1   GRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQR 35

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 37

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 69.0 bits (169), Expect = 1e-16
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKD 193
           RWIHP SGR Y+ +F PPK  G DD+TGEPL+QR+D
Sbjct: 2   RWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQRED 37

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 35

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 67.3 bits (165), Expect = 4e-16
 Identities = 15/35 (42%), Positives = 16/35 (45%)

Query: 157 GRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191
           GR I    G +YH  F PP   G  D  G  L QR
Sbjct: 1   GRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQR 35

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]} Length = 35

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

 Score = 67.1 bits (164), Expect = 6e-16
 Identities = 23/35 (65%), Positives = 24/35 (68%)

Query: 157 GRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191
           GR +H  SGR YH KF PPKV G DDVTGE L  R
Sbjct: 1   GRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR 35

>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 30

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 64.2 bits (157), Expect = 8e-15
 Identities = 20/30 (66%), Positives = 23/30 (76%)

Query: 162 PASGRSYHTKFAPPKVHGFDDVTGEPLIQR 191
           P SGRSYH +F PPK    DD+TGEPLI+R
Sbjct: 1   PQSGRSYHEEFNPPKEPMKDDITGEPLIRR 30

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 63.5 bits (153), Expect = 4e-13
 Identities = 24/175 (13%), Positives = 47/175 (26%), Gaps = 9/175 (5%)

Query: 32  KRLVLI-GPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV 90
           K+L +I GP G GK T    +  +        GD++   V        ++ E +      
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61

Query: 91  SDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSI 150
                  I D  +     +   +LD              +  K      + +    +   
Sbjct: 62  -------ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREE 114

Query: 151 LEERITGRWIHPASGRSYHTKFAPPKVHG-FDDVTGEPLIQRKDDTAQVLKSRLE 204
           L  R   R      G          +  G  +         +  +   ++K+   
Sbjct: 115 LLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKT 169

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 60.0 bits (144), Expect = 8e-12
 Identities = 27/220 (12%), Positives = 57/220 (25%), Gaps = 36/220 (16%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDE-----YCLCHLATGDMLRSAVAAKTPLGIKAKEAM-- 84
           K  ++ G PG GK T    +K+           +  GD + +          + +     
Sbjct: 2   KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLS 61

Query: 85  -DKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLN 143
            +K + +  D   GI ++A  +   E    +D        +  L  +             
Sbjct: 62  VEKQKKLQIDAAKGIAEEA--RAGGEGYLFIDTHAVIRTPSGYLPGLP------------ 107

Query: 144 FAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRL 203
                          ++      S                  +    R D + + +    
Sbjct: 108 --------------SYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILET 153

Query: 204 EAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
             F +         A   V   ++ E  P     E+ + +
Sbjct: 154 INFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 57.4 bits (137), Expect = 1e-10
 Identities = 20/211 (9%), Positives = 52/211 (24%), Gaps = 3/211 (1%)

Query: 38  GPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELV---SDDL 94
           GP G+GKGT    + +      L +G + R    A     +          L        
Sbjct: 10  GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRF 69

Query: 95  VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154
           V    +  +     +    +         ++       ++     +     +   I + R
Sbjct: 70  VSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR 129

Query: 155 ITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVI 214
             G  + P +        +  +      +  +      +    + + +      +   V 
Sbjct: 130 DMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVA 189

Query: 215 DYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS 245
                   L         ++V  +  +    
Sbjct: 190 PLVPAADALVLDSTTLSIEQVIEKALQYARQ 220

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 26/217 (11%), Positives = 62/217 (28%), Gaps = 34/217 (15%)

Query: 32  KRLVLIGPPGSGKGTQSPVI-----KDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDK 86
           K +V+ G PG G  T S +      K+      ++ G ++     AK    +  ++ M K
Sbjct: 2   KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE--VAKEENLVSDRDQMRK 59

Query: 87  GELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAI 146
            +  +   +  +  + + + + E    +D           L  +      +++  L   +
Sbjct: 60  MDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 119

Query: 147 DDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAF 206
           + +  +E +  R       R                          D        + +  
Sbjct: 120 ETTG-DEILMRRMSDETRVR--------------------------DLDTASTIEQHQFM 152

Query: 207 HKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL 243
           ++             V    +      +   E+  VL
Sbjct: 153 NRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL 189

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 52.0 bits (123), Expect = 3e-09
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 3/131 (2%)

Query: 32  KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS 91
           K ++ IG PGSGK T +     +    +    D  R ++ A             +G +  
Sbjct: 3   KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV-- 60

Query: 92  DDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSIL 151
             +        +      KG I+        +    +   ++ G K++    F +  + L
Sbjct: 61  TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWTEL 119

Query: 152 EERITGRWIHP 162
            +R + R    
Sbjct: 120 VKRNSKRGTKA 130

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 51.5 bits (122), Expect = 7e-09
 Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 16/130 (12%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            +++ G PG+GK + + +I  E           L      K        +      ++ +
Sbjct: 7   NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLV-----KENHFYTEYDTELDTHIIEE 61

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
                ++D            ++D     +                   V+       +L 
Sbjct: 62  KDEDRLLDFMEPIMVSRGNHVVDYHSSELFPE-----------RWFHMVVVLHTSTEVLF 110

Query: 153 ERITGRWIHP 162
           ER+T R    
Sbjct: 111 ERLTKRQYSE 120

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 20/147 (13%), Positives = 40/147 (27%), Gaps = 3/147 (2%)

Query: 38  GPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVG 97
           GP  SGK T + +I  ++   +L TG M R+A        +  +E      L+    +  
Sbjct: 10  GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISF 69

Query: 98  IIDQAMKKPSCEKGFILDGFPR---TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEER 154
              +   +        +    R          +  + E +   +      A    I+ + 
Sbjct: 70  GRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDG 129

Query: 155 ITGRWIHPASGRSYHTKFAPPKVHGFD 181
                +            A        
Sbjct: 130 RDIGTVVLPQAELKIFLVASVDERAER 156

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 21/130 (16%)

Query: 33  RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
            ++L G PG GK T    +  +  L ++  GD+ R           +        E    
Sbjct: 6   NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAR----------EEQLYDGYDEEYDCP 55

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
            L    +   +     E G I+D             +   ++   I  VL    D ++L 
Sbjct: 56  ILDEDRVVDELDNQMREGGVIVDYHGC---------DFFPERWFHIVFVLR--TDTNVLY 104

Query: 153 ERITGRWIHP 162
           ER+  R  + 
Sbjct: 105 ERLETRGYNE 114

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 4/165 (2%)

Query: 19  ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA-TGDMLRSAVAAKTPLG 77
           E L + K + +     +L G PGSGK +    I +E     +    D  +          
Sbjct: 20  EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ--QHPNFDE 77

Query: 78  IKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTK 137
           +      D  + V+            +        +++G  RT     +   ML+ +G +
Sbjct: 78  LVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYE 137

Query: 138 IDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDD 182
              +   A+           R+    +      +  P + H    
Sbjct: 138 TK-MYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVV 181

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 26/181 (14%), Positives = 45/181 (24%), Gaps = 14/181 (7%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD 92
           L+L G PGSGK T +  + +           D L   +          +       ++  
Sbjct: 7   LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQI 66

Query: 93  DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILE 152
              V     A +        ILDG  R                  +          +   
Sbjct: 67  AADV-----AGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLR------TTAAEAI 115

Query: 153 ERITGRWIHPASGRSYHTKFAP--PKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQT 210
           ER   R     S              +  F+        +  D   Q   + L++   + 
Sbjct: 116 ERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGRFRI 175

Query: 211 E 211
           +
Sbjct: 176 D 176

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 11/140 (7%)

Query: 34  LVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD 93
            VL+G  GSGK   +  +  +     L    +       K   G    +   K  L + +
Sbjct: 9   YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALN 68

Query: 94  LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEE 153
                + +  K        +                 L ++G      +    D  ++E 
Sbjct: 69  DAAFAMQRTNKVSLIVCSALKK-----------HYRDLLREGNPNLSFIYLKGDFDVIES 117

Query: 154 RITGRWIHPASGRSYHTKFA 173
           R+  R  H    +   T+F 
Sbjct: 118 RLKARKGHFFKTQMLVTQFE 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	100.0
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	100.0
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	100.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.97
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.97
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.78
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.76
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.71
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.71
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.68
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.67
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.65
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.65
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.65
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.65
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.62
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.61
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.59
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.56
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.54
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.5
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.5
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.49
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.48
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.48
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.47
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.37
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.37
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.36
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.33
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.24
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.16
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.11
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.06
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.03
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.01
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.99
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.96
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.83
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.75
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.73
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.69
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.67
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.61
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.61
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	98.51
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	98.44
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.36
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.36
d1ak2a2	30	Microbial and mitochondrial ADK, insert "zinc fing	98.27
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	98.25
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.19
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.16
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	98.14
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.12
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.08
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.08
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	98.07
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.04
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.03
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.0
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.98
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.96
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.91
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.9
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.87
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.79
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.77
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.75
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.74
d1zaka2	31	Microbial and mitochondrial ADK, insert "zinc fing	97.7
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.68
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.68
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.66
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.6
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.57
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.56
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.55
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.53
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.48
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.42
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.4
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.4
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.36
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.35
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.35
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.35
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.32
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.23
d1okkd2	207	GTPase domain of the signal recognition particle r	97.23
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.21
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.17
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.16
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.16
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.12
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.09
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.07
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.06
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.06
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.06
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.05
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.02
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.01
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	96.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.95
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.94
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.94
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.92
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.91
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.9
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.89
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.86
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.82
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.8
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.79
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.77
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.76
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.72
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.7
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.7
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.69
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.69
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.67
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.63
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.61
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.61
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.6
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.57
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.53
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.53
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.52
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.51
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.49
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.49
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.49
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.48
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.45
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.44
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.43
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.4
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.38
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.36
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.35
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.32
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.31
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.28
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.25
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.25
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.24
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.24
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.23
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.2
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.16
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.16
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.15
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.15
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.14
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.14
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.11
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.1
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.06
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.06
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.04
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.02
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.01
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.01
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.91
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.9
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.88
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.87
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.85
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.85
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.85
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.82
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.81
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.8
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.8
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.8
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.79
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.71
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.65
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.64
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.63
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.61
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.58
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.45
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.43
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.43
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.4
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.39
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.34
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.22
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.21
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.12
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.05
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.01
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.91
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.84
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.84
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.82
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.82
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.79
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.76
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.73
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.72
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.71
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.68
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.61
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.46
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.39
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.29
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.09
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.81
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.77
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.59
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.23
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.17
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.03
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.99
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.93
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.79
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	92.73
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	92.72
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.61
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.53
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.48
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.4
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.35
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.27
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	92.16
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.06
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.95
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.43
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.01
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	90.97
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	90.9
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.86
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.69
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	90.69
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.26
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	89.93
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.82
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.67
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	89.5
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	89.46
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	89.26
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	89.22
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	89.17
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	88.84
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	88.82
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.82
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	88.7
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.64
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.08
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	87.98
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.88
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	87.75
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.49
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.85
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.92
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.68
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.27
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	84.69
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	83.2
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.05
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	82.7
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.32

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=100.00  E-value=2.8e-33  Score=219.37  Aligned_cols=186  Identities=49%  Similarity=0.910  Sum_probs=171.9

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      ++++.|+|+|||||||||+|+.||++||+.+|++++++|+....++..+..+..++..|..++++.+..++..++.....
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~   80 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   80 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccc
Confidence            46788999999999999999999999999999999999999899999999999999999999999999999999887766


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      .+|||++|||++..++..|...+...+..+.++++|+++++.+.+|+..|..                            
T Consensus        81 ~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~----------------------------  132 (190)
T d1ak2a1          81 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI----------------------------  132 (190)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE----------------------------
T ss_pred             cCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCC----------------------------
Confidence            7899999999999999998887777778889999999999999999999863                            


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                        +.+++.+.+++|+..|++...++.++|.+.+.++.||+++++++|++.|.++|+
T Consensus       133 --~~d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~  186 (190)
T d1ak2a1         133 --HSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS  186 (190)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             --CCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence              246678899999999999999999999988899999999999999999998875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.2e-32  Score=212.67  Aligned_cols=181  Identities=39%  Similarity=0.736  Sum_probs=167.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|.|||||||||+|+.|+++||+.++++++++++.....++.+..+..++..|..++++....++...+....+..+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            68999999999999999999999999999999999999998999999999999999999999999999998887777789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      |++||+|.+..+...|.......+..|+++++|+++++++.+|+..|.                               +
T Consensus        81 ~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~-------------------------------r  129 (181)
T d2cdna1          81 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG-------------------------------R  129 (181)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC-------------------------------C
T ss_pred             EEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccc-------------------------------c
Confidence            999999999999999988877778899999999999999999999875                               3


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                      .++..+.+++|++.|++...++.++|.+  .++.|||++++++|++.|.++|..
T Consensus       130 ~~~~~~~i~~rl~~y~~~~~~l~~~y~~--~~~~Id~~~s~eeV~~~I~~~l~k  181 (181)
T d2cdna1         130 ADDTDDVILNRMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRALGK  181 (181)
T ss_dssp             TTCSHHHHHHHHHHHHHHTTTHHHHTTT--TEEEEECCSCHHHHHHHHHHHTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhc--CeEEEECCCCHHHHHHHHHHHhCc
Confidence            5677889999999999999999999965  689999999999999999998863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=100.00  E-value=8.3e-32  Score=209.58  Aligned_cols=178  Identities=43%  Similarity=0.759  Sum_probs=165.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|.|+|||||||+|+.|+++||+++++++++++......++.|..+..++..|..+|+.....++..++......++
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccc
Confidence            68999999999999999999999999999999999999988999999999999999999999999999999888777789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      |++||+|++..++..|.+.+...+..+..+++++++.+.+.+|+..                                  
T Consensus        81 ~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~----------------------------------  126 (182)
T d1s3ga1          81 FLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTA----------------------------------  126 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT----------------------------------
T ss_pred             eeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhc----------------------------------
Confidence            9999999999999999888877777888999999999999999754                                  


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                       ++.++.+++|++.|++...++.++|.+.+.++.|||+.++++|++.|.++|+
T Consensus       127 -~~~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         127 -DDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             -TCSHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHT
T ss_pred             -cchhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence             3456889999999999999999999988899999999999999999999886

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=5.1e-32  Score=212.78  Aligned_cols=189  Identities=28%  Similarity=0.446  Sum_probs=167.0

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      ...+|.+|+|+|||||||||+|+.|+++||+.++++++++++........+..+..++..+..+++.....++..+....
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN   81 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhh
Confidence            34577899999999999999999999999999999999999999989999999999999999999998888888776653


Q ss_pred             CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                       ..++|++||+|++..++..|..... ....|+++|+|+||++++.+|+..|...                         
T Consensus        82 -~~~~~i~dg~p~~~~~~~~l~~~~~-~~~~~~~vi~l~~~~~~~~~R~~~~~~~-------------------------  134 (194)
T d1qf9a_          82 -QGKNFLVDGFPRNEENNNSWEENMK-DFVDTKFVLFFDCPEEVMTQRLLKRGES-------------------------  134 (194)
T ss_dssp             -TTCCEEEETCCCSHHHHHHHHHHHT-TTCEEEEEEEEECCHHHHHHHHHHHHTT-------------------------
T ss_pred             -hcCCeEEEecchhhhhHHHHHhhhh-hcccccEEEEeecchHHHHHHHHhhccc-------------------------
Confidence             3478999999999999988876543 3467899999999999999999887531                         


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                        ..+.++..+.+++|+..|++...++.++|.+.+.++.||++.+++++++.|.++|+
T Consensus       135 --~~~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~  190 (194)
T d1qf9a_         135 --SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK  190 (194)
T ss_dssp             --SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             --cccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHH
Confidence              12467788999999999999999999999988899999999999999999999886

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-32  Score=209.73  Aligned_cols=177  Identities=50%  Similarity=0.898  Sum_probs=161.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS-CE  109 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~-~~  109 (245)
                      .|.|+|+|+|||||||+|+.|+++||+++|++++++++.....+..|..+..++..+..+++......+..++.... ..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999888887776554 34


Q ss_pred             CceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccc
Q 025970          110 KGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLI  189 (245)
Q Consensus       110 ~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~  189 (245)
                      .||++||||++..++..+..++...+..|+++|+|+++++++.+|+..+                               
T Consensus        82 ~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~-------------------------------  130 (180)
T d1akya1          82 NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA-------------------------------  130 (180)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH-------------------------------
T ss_pred             CCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc-------------------------------
Confidence            7999999999999999988888777888999999999999999998754                               


Q ss_pred             cCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          190 QRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       190 ~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                             +.+.+|+..|++.+.++.++|.+.+.++.||+++++++|++.|.+.|..
T Consensus       131 -------~~~~~r~~~y~~~~~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~l~k  179 (180)
T d1akya1         131 -------DALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK  179 (180)
T ss_dssp             -------HHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred             -------ccccchHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence                   3567899999999999999999888999999999999999999998853

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.2e-32  Score=213.41  Aligned_cols=186  Identities=35%  Similarity=0.574  Sum_probs=167.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC  108 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~  108 (245)
                      ..+++|+|+|||||||||+|+.|+++||+++|++++++++.....+..+..+..++..|..+|++++..++..++....+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   85 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVD   85 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccc
Confidence            35779999999999999999999999999999999999999999999999999999999999999999999988876654


Q ss_pred             -CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCc
Q 025970          109 -EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEP  187 (245)
Q Consensus       109 -~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~  187 (245)
                       .+|+++||||++..|+..+...+    ..+..+++++++.++..+|...+..                           
T Consensus        86 ~~~g~ildg~pr~~~qa~~~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~---------------------------  134 (194)
T d3adka_          86 TSKGFLIDGYPREVKQGEEFERKI----GQPTLLLYVDAGPETMTKRLLKRGE---------------------------  134 (194)
T ss_dssp             TCSCEEEESCCSSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHH---------------------------
T ss_pred             ccccceeeeccchhHHHHHHHHHh----CCccchhccccchhhhHhHhhhhcc---------------------------
Confidence             57999999999999999887643    5678999999999999999887642                           


Q ss_pred             cccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          188 LIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       188 l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                      ...|.++..+.+++|++.|++...++.++|.+.+.++.|||++++++|++.|.+.|++
T Consensus       135 ~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         135 TSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HHTCCCCCSTTHHHHHHHHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            2345677788899999999999999999999888999999999999999999998863

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-31  Score=208.26  Aligned_cols=173  Identities=40%  Similarity=0.784  Sum_probs=156.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|||||||||+|+.|+++||+.++++++++++....+++.+..+..++.+|..+|+..+..++..++......+|
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999888877666789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      |++||+|++..+...+..    .+..|+++|+|+||++++.+|+..|                                 
T Consensus        81 ~i~~g~pr~~~~~~~~~~----~~~~~~~vi~L~~~~~~l~~R~~~~---------------------------------  123 (179)
T d1e4va1          81 FLLDGFPRTIPQADAMKE----AGINVDYVLEFDVPDELIVDRIVKD---------------------------------  123 (179)
T ss_dssp             EEEESCCCSHHHHHHHHH----TTCCCSEEEEEECCHHHHHHHHHTT---------------------------------
T ss_pred             eeecccccchHHhhhhhh----ccCCceEEEEeccchhhhhhhhccc---------------------------------
Confidence            999999999998876554    4678999999999999999998765                                 


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhc-----CcEEEEeCCCChhHHHHHHHHhh
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKK-----GVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~-----~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                        +..+.+++|+..|++...++.++|.+.     ..++.|||++++++|++.|.++|
T Consensus       124 --~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         124 --DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             --CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence              246789999999999999999999752     36899999999999999999876

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.98  E-value=4.2e-31  Score=206.87  Aligned_cols=174  Identities=37%  Similarity=0.655  Sum_probs=157.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      ++.+.|.|+|+|||||||||+|+.|+++||+.+|++++++++.+...++.+..+...+..|..+|++.+..++...+...
T Consensus         2 ~~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~   81 (189)
T d2ak3a1           2 ASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNL   81 (189)
T ss_dssp             CSSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999998877654


Q ss_pred             CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCC
Q 025970          107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGE  186 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~  186 (245)
                      . ..+||+||||++..|+..|++     ...++.+|+|+||.+.+.+|+..|                            
T Consensus        82 ~-~~~~ildGfPr~~~q~~~l~~-----~~~~~~vi~L~v~~~~l~~R~~~r----------------------------  127 (189)
T d2ak3a1          82 T-QYNWLLDGFPRTLPQAEALDR-----AYQIDTVINLNVPFEVIKQRLTDR----------------------------  127 (189)
T ss_dssp             T-TSCEEEESCCCSHHHHHHHHT-----TCCCCEEEEEECCHHHHHHHHTGS----------------------------
T ss_pred             h-hcCcccccccchhhHHHHhhh-----cCcceEEEEEeccchhhhhhcccc----------------------------
Confidence            3 468999999999999987764     357899999999999999998654                            


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          187 PLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       187 ~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                               .+.+.+|++.|++...++.++|.+.+.++.+|++. +++|++.|.+.|+
T Consensus       128 ---------~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~idg~~-~~eV~~~I~~~i~  175 (189)
T d2ak3a1         128 ---------PETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTE-TNKIWPHVYAFLQ  175 (189)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSS-HHHHHHHHHHHHH
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCC-hHHHHHHHHHHHH
Confidence                     35788999999999999999999888999999985 6999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.3e-31  Score=206.03  Aligned_cols=186  Identities=26%  Similarity=0.507  Sum_probs=162.9

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP---  106 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~---  106 (245)
                      |++|+|.|||||||||+|+.|+++||+.+|++++++|..... .++.++.+...+..+..+++..+..++...+...   
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            789999999999999999999999999999999999987764 5788999999999999999998888877665432   


Q ss_pred             -CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCC
Q 025970          107 -SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTG  185 (245)
Q Consensus       107 -~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~  185 (245)
                       ...++|+++|||++..+...+...+. ....++.+++++++.++..+|...|...                        
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~-~~~~~~~vi~l~~~~~~~~~r~~~R~~~------------------------  135 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEICIERCLERGKS------------------------  135 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHT-TTCEEEEEEEEECCHHHHHHHHHHHHHT------------------------
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhh-ccccccEEEeecCcchhheeecccCCCc------------------------
Confidence             33579999999999999998877654 3356789999999999999999998532                        


Q ss_pred             CccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          186 EPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       186 ~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                         .+|.++..+.+++|+..|++...++.++|.+.+.++.|||++++++|++.|.++|+
T Consensus       136 ---~~r~~~~~e~i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~  191 (194)
T d1teva_         136 ---SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD  191 (194)
T ss_dssp             ---SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ---ccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence               13567788999999999999999999999988889999999999999999999875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=2.8e-30  Score=200.45  Aligned_cols=178  Identities=42%  Similarity=0.787  Sum_probs=164.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |+|+|+|||||||||+|+.|+++||+.+++++++++......++.+..+..++..|..+|+.....++..++.......+
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            67999999999999999999999999999999999998888999999999999999999999999999888877767789


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      |+++++|....+...+.......+..++.+++|+++.+.+.+|+..+                                 
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~---------------------------------  127 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD---------------------------------  127 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT---------------------------------
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc---------------------------------
Confidence            99999999999999888877777788999999999999999998864                                 


Q ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          192 KDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       192 ~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                        ++.+.+++|++.|++...++.++|.+.+.++.|||++++++|++.|.++|.
T Consensus       128 --~~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~  178 (182)
T d1zina1         128 --DNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLG  178 (182)
T ss_dssp             --CSHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             --cchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence              256789999999999999999999988899999999999999999999875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-31  Score=206.51  Aligned_cols=188  Identities=26%  Similarity=0.517  Sum_probs=162.4

Q ss_pred             cCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 025970           26 CSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDQAMK  104 (245)
Q Consensus        26 ~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~  104 (245)
                      ++|...++|+|+|||||||||+|+.|+++||+.+|++++++|+.... ++..+..+..++..+...++......+..++.
T Consensus         3 ~~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   82 (196)
T d1ukza_           3 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   82 (196)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHH
Confidence            35667789999999999999999999999999999999999987654 57899999999999999999888877766544


Q ss_pred             CC--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCC
Q 025970          105 KP--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDD  182 (245)
Q Consensus       105 ~~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~  182 (245)
                      ..  ....++++||+|++..|+..+...    ...++.+++|++|++++++|+..+..                      
T Consensus        83 ~~~~~~~~~~vl~g~p~~~~q~~~~~~~----~~~~~~~i~l~~~~e~~~~R~~~~~~----------------------  136 (196)
T d1ukza_          83 DNVKANKHKFLIDGFPRKMDQAISFERD----IVESKFILFFDCPEDIMLERLLERGK----------------------  136 (196)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHHH----TCCCSEEEEEECCHHHHHHHHHHHHH----------------------
T ss_pred             hhhccCCCceeeeccchhHHHHHHHHHh----ccccceeeccCCCHHHHHHHHHhccc----------------------
Confidence            32  224689999999999998876654    36789999999999999999988742                      


Q ss_pred             CCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          183 VTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                           ..++.++..+.+++|+..|++...++.+||.+.+.++.||+++++++|++.|.++|+
T Consensus       137 -----~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~  193 (196)
T d1ukza_         137 -----TSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR  193 (196)
T ss_dssp             -----HHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             -----cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                 233567788999999999999999999999988899999999999999999999886

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=2.6e-29  Score=196.44  Aligned_cols=174  Identities=32%  Similarity=0.616  Sum_probs=151.4

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSC-  108 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~-  108 (245)
                      .||+|+|.|||||||||+|+.|+++||++++++++++++......+....+...+..|..++.......+...+....+ 
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   81 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   81 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccc
Confidence            5889999999999999999999999999999999999999888888899999999999999998877777666555433 


Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      .+++++||+|++..+...|.    ..+..|+.+|+|++|++++.+|+..+.                             
T Consensus        82 ~~~~vid~~~~~~~q~~~l~----~~~~~p~~~i~L~~~~e~l~~R~~~~~-----------------------------  128 (189)
T d1zaka1          82 ENGWLLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELLVERVVFDD-----------------------------  128 (189)
T ss_dssp             HTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEEECCHHHHHHHHTTTC-----------------------------
T ss_pred             cCcEEeeccchhhHHHhhhh----hcccccchheeechhhhhhhhhccccc-----------------------------
Confidence            36899999999999988664    345789999999999999999986552                             


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                            +.+.+++|+..|++...++.++|.  +.++.|||+++++++++.|.++|.
T Consensus       129 ------~~e~~~~rl~~y~~~~~~l~~~y~--~~~~~Id~~~~idev~~~I~~~l~  176 (189)
T d1zaka1         129 ------TEEKVKLRLETYYQNIESLLSTYE--NIIVKVQGDATVDAVFAKIDELLG  176 (189)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHTTC--CCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECCCCHHHHHHHHHHHHH
Confidence                  235678899999999999999985  478999999999999999988774

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.78  E-value=3.4e-18  Score=130.37  Aligned_cols=164  Identities=13%  Similarity=0.171  Sum_probs=97.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  112 (245)
                      .|+|+|+|||||||+++.||+++|++++++|+++++..  +...    .+++...+   ......+....+........+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~--g~~i----~ei~~~~g---~~~~~~~~~~~l~~~~~~~~~   74 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTV----ADVVAAEG---WPGFRRRESEALQAVATPNRV   74 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCH----HHHHHHHH---HHHHHHHHHHHHHHHCCSSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh--hhhh----hhhhcccc---hHHHHHHHHHHHHhhccccce
Confidence            46788999999999999999999999999999887642  2222    22222111   122233333333333333344


Q ss_pred             EEcC--CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcccc
Q 025970          113 ILDG--FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQ  190 (245)
Q Consensus       113 iidg--~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~  190 (245)
                      +..+  .+........    +...    ..+|||++|++++.+|+..+....                           .
T Consensus        75 ~~~~~~~~~~~~~~~~----l~~~----~~~v~L~~~~e~l~~Rl~~~~~~~---------------------------~  119 (170)
T d1e6ca_          75 VATGGGMVLLEQNRQF----MRAH----GTVVYLFAPAEELALRLQASLQAH---------------------------Q  119 (170)
T ss_dssp             EECCTTGGGSHHHHHH----HHHH----SEEEEEECCHHHHHHHHHHHHCSC---------------------------C
T ss_pred             ecccccchhhhHHHHh----hhcc----ceeEEEecCchhHHHHHhhccccc---------------------------c
Confidence            4433  2233332332    2222    479999999999999987653211                           1


Q ss_pred             CCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          191 RKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       191 ~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                      |+..........++.......++   |.+... ++||++.++++++..|.+.|.
T Consensus       120 r~~~~~~~~~~~~~~~~~er~~l---Y~~~a~-~~Id~~~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         120 RPTLTGRPIAEEMEAVLREREAL---YQDVAH-YVVDATQPPAAIVCELMQTMR  169 (170)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHHH---HHHHCS-EEEETTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH---HHHcCC-EEEcCCCCHHHHHHHHHHHcC
Confidence            23333444444444444444444   332222 578999999999999988764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.3e-18  Score=132.14  Aligned_cols=163  Identities=16%  Similarity=0.151  Sum_probs=99.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH-------HHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD-------LVVGII   99 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-------~~~~~l   99 (245)
                      ++..+.+|+|.|+|||||||+++.|+++++..+++.+.+.......          ....+......       .+...+
T Consensus         2 ~~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~   71 (171)
T d1knqa_           2 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIE----------KMASGEPLNDDDRKPWLQALNDAA   71 (171)
T ss_dssp             CCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHH----------HHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhh----------hhccCcceehhhhHHHHHHHHHHH
Confidence            4567889999999999999999999999999999998764332210          01111111111       111111


Q ss_pred             HHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCC
Q 025970          100 DQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHG  179 (245)
Q Consensus       100 ~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~  179 (245)
                      .....   ....++++...........+    ... ..+..+|+|++|++++.+|+.+|..                   
T Consensus        72 ~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~v~l~~~~e~~~~Rl~~R~~-------------------  124 (171)
T d1knqa_          72 FAMQR---TNKVSLIVCSALKKHYRDLL----REG-NPNLSFIYLKGDFDVIESRLKARKG-------------------  124 (171)
T ss_dssp             HHHHH---HCSEEEEECCCCSHHHHHHH----HTT-CTTEEEEEEECCHHHHHHHHHTSTT-------------------
T ss_pred             HHHHh---ccCceEeeccchHHHHHHHH----HHh-CCCceEEeecCCHHHHHHHHHhCcC-------------------
Confidence            11111   12334444333333333322    222 4566899999999999999998852                   


Q ss_pred             CCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          180 FDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       180 ~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                                  .....+.++.+++.|+.       .+.....++.||+++++|++++.|.+.|++
T Consensus       125 ------------~~~~~~~~~~~~~~~e~-------~~~~e~~~~~id~~~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         125 ------------HFFKTQMLVTQFETLQE-------PGADETDVLVVDIDQPLEGVVASTIEVIKK  171 (171)
T ss_dssp             ------------CCCCHHHHHHHHHHCCC-------CCTTCTTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred             ------------CCccHHHHHhhHHHhhC-------CCcccCCEEEEeCCCCHHHHHHHHHHHhcC
Confidence                        12234455554443322       112233578899999999999999998864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5e-17  Score=127.97  Aligned_cols=173  Identities=16%  Similarity=0.093  Sum_probs=100.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQ-AMK  104 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~  104 (245)
                      +++.+|+|.|++||||||+++.|++.+   |+.++.+.     ....+++.++.+..++.....+.......++.. +..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~-----~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~   75 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR-----FPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE   75 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-----SSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe-----CCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHH
Confidence            468899999999999999999999987   55554331     111234566666776665554444333222211 111


Q ss_pred             C-------CCCCCceEEcCCCCCHHHHH--------HHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCcccc
Q 025970          105 K-------PSCEKGFILDGFPRTVVQAE--------KLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYH  169 (245)
Q Consensus       105 ~-------~~~~~~~iidg~p~~~~~~~--------~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~  169 (245)
                      .       +..+..+|+|.|..+.....        .+...+......||++|||++|++++.+|...++.         
T Consensus        76 ~~~~i~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~---------  146 (209)
T d1nn5a_          76 QVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE---------  146 (209)
T ss_dssp             THHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C---------
T ss_pred             HHHhHHHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc---------
Confidence            1       11234577887643221110        01111222336899999999999999999765431         


Q ss_pred             ccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHh-cCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          170 TKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAK-KGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       170 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~-~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                            ..++.+.+.+..+.|.+       ++.+ .+.+++||+++++++|++.|..+++
T Consensus       147 ----------------------~~E~~~~~~r~~~~Y~~-------l~~~~~~~~~~IDa~~~~e~V~~~I~~~v~  193 (209)
T d1nn5a_         147 ----------------------RYENGAFQERALRCFHQ-------LMKDTTLNWKMVDASKSIEAVHEDIRVLSE  193 (209)
T ss_dssp             ----------------------TTCSHHHHHHHHHHHHH-------HTTCTTSCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ----------------------ccccHHHHHHHHHHHHH-------HHHhCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence                                  11233333222233322       2222 2468999999999999999988764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.71  E-value=5.4e-17  Score=123.30  Aligned_cols=114  Identities=16%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhC-cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH-cC
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYC-LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAM-KK  105 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~-~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~  105 (245)
                      -++++.|+|+|+|||||||+|+.|+++|+ +.+++.+++...........       ...+...........+...+ ..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~   74 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-------TELDTHIIEEKDEDRLLDFMEPI   74 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHH-------HhhcccchHHHHHHHHHHHHHhh
Confidence            36789999999999999999999999996 67777766654421111111       11122222232222222222 22


Q ss_pred             CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          106 PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       106 ~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .....++++++++......           ..++.+|+|+||++++.+|+..|.
T Consensus        75 i~~~~~~~~~~~~~~~~~~-----------~~~~~vI~L~~~~e~l~~Rl~~R~  117 (174)
T d1y63a_          75 MVSRGNHVVDYHSSELFPE-----------RWFHMVVVLHTSTEVLFERLTKRQ  117 (174)
T ss_dssp             HTSSSEEEEECSCCTTSCG-----------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             hhhcccccccHHHHHHHHH-----------hcCceEEEEECCHHHHHHHHHhCC
Confidence            2334678888876543111           245789999999999999999885

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=8.3e-17  Score=121.95  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=66.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|+|+|||||||+++.||+++|++++++|+.+.+..  +.........   .|...........+...+..   .+.
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~--g~~i~~~~~~---~g~~~~r~~e~~~~~~~~~~---~~~   73 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFAT---DGEQEFRRIEEDVVRAALAD---HDG   73 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHHH---HCHHHHHHHHHHHHHHHHHH---CCS
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh--hhhhhhhhhh---hhHHHHHHHHhhhhhhcccc---ccc
Confidence            457788999999999999999999999999999887643  2222221111   11100011112222222221   234


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ++..|.+......  ....+     ....+|||+++++++.+|+..+.
T Consensus        74 vi~~gg~~~~~~~--~~~~l-----~~~~~I~L~~~~~~~~~R~~~~~  114 (165)
T d2iyva1          74 VLSLGGGAVTSPG--VRAAL-----AGHTVVYLEISAAEGVRRTGGNT  114 (165)
T ss_dssp             EEECCTTGGGSHH--HHHHH-----TTSCEEEEECCHHHHHHHTTCCC
T ss_pred             ccccccccccccc--ccccc-----cccceeeeeccchhhhhcccccc
Confidence            5555443222111  11121     23468999999999999997654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.67  E-value=1.5e-16  Score=120.20  Aligned_cols=109  Identities=15%  Similarity=0.098  Sum_probs=64.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  112 (245)
                      .|+|+|+|||||||+++.||+++|++++++|+++++..  +.....    .+..............+...+..   ....
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~--g~~i~~----~~~~~g~~~~r~~e~~v~~~l~~---~~~~   72 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSE----IFEQKRENFFREQEQKMADFFSS---CEKA   72 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHH----HHHHHCHHHHHHHHHHHHHHHTT---CCSE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH--hhhhhh----HHHhhhhccchhhhhhhchhhhh---cccc
Confidence            48899999999999999999999999999999987643  222222    22221111111122222333322   2333


Q ss_pred             EEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          113 ILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       113 iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      |+....... ...    .+    .....+|||++|.+++.+|+..+.
T Consensus        73 v~~~~g~~~-~~~----~l----~~~~~vI~L~~s~~~l~~Rl~~~~  110 (161)
T d1viaa_          73 CIATGGGFV-NVS----NL----EKAGFCIYLKADFEYLKKRLDKDE  110 (161)
T ss_dssp             EEECCTTGG-GST----TG----GGGCEEEEEECCHHHHTTCCCGGG
T ss_pred             ccccccchh-hHH----HH----HhCCeEEEeccchHHHHHHHcccc
Confidence            443211111 111    11    234689999999999999987654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.6e-15  Score=119.13  Aligned_cols=172  Identities=16%  Similarity=0.180  Sum_probs=96.6

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCC-----CCHHH-------
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGEL-----VSDDL-------   94 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~-------   94 (245)
                      ++++|+|.|++||||||+++.|++.+   |+..+...   +  ...++..|..+++.+..+..     .....       
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~---~--ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT---R--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA   75 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE---E--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEe---c--CCCCccchhhhHHHHhccccccccccchHHHHHHHHH
Confidence            46799999999999999999999887   43322110   0  01133455555555543321     11111       


Q ss_pred             -----HHHHHHHHHcCCCCCCceEEcCCCC------------CHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhC
Q 025970           95 -----VVGIIDQAMKKPSCEKGFILDGFPR------------TVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITG  157 (245)
Q Consensus        95 -----~~~~l~~~l~~~~~~~~~iidg~p~------------~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~  157 (245)
                           ....+...+.   .+..+|.|.+..            .......+...+. ....||++|||++|++++.+|+..
T Consensus        76 ~~~~~~~~~i~~~l~---~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~pdl~i~Ld~~~e~~~~Ri~~  151 (210)
T d4tmka_          76 ARVQLVETVIKPALA---NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVL-GDFRPDLTLYLDVTPEVGLKRARA  151 (210)
T ss_dssp             HHHHHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---cCCcccccchhhhhhhhhccccccchhHHHHHHHHhh-cCCCCceEEEecchHHHHHHHhhh
Confidence                 1111112221   223455565421            1122222222221 236899999999999999999998


Q ss_pred             CcccCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHH
Q 025970          158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTV  237 (245)
Q Consensus       158 r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~  237 (245)
                      |.....                           ......+.+.+..+.|       .+++.+...++.||+++++|++++
T Consensus       152 R~~~~~---------------------------~~~~~~~~~~~v~~~y-------~~~~~~~~~~~~IDa~~~~e~v~~  197 (210)
T d4tmka_         152 RGELDR---------------------------IEQESFDFFNRTRARY-------LELAAQDKSIHTIDATQPLEAVMD  197 (210)
T ss_dssp             HSSCCT---------------------------TTTSCHHHHHHHHHHH-------HHHHHTCTTEEEEETTSCHHHHHH
T ss_pred             ccccch---------------------------hhhccHHHHHHHHHHH-------HHHHhcCCCEEEEECCCCHHHHHH
Confidence            852100                           0112333333222333       334444456899999999999999


Q ss_pred             HHHHhhc
Q 025970          238 EVQKVLS  244 (245)
Q Consensus       238 ~i~~~l~  244 (245)
                      .|.+.|+
T Consensus       198 ~I~~~i~  204 (210)
T d4tmka_         198 AIRTTVT  204 (210)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.65  E-value=6.5e-16  Score=118.26  Aligned_cols=177  Identities=14%  Similarity=0.121  Sum_probs=99.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      ++|+|.|+|||||||+++.|++.|+     +.+++.++..+...........  ...+..................+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD--RDQMRKMDPETQKRIQKMAGRKIAEM   79 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSS--GGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhh--hhhhhhhhchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999999884     4556677776665432110000  00000000000011111112222222


Q ss_pred             CCCCceEEcCCCCCHHHH-------HHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCC
Q 025970          107 SCEKGFILDGFPRTVVQA-------EKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHG  179 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~-------~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~  179 (245)
                      .....+++|+++....+.       ..+...     ..|+.+|+|+++++++.+|+.++....                 
T Consensus        80 ~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~~~~~~~~R~~~~~~~~-----------------  137 (190)
T d1khta_          80 AKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-----LNPDLIIVVETTGDEILMRRMSDETRV-----------------  137 (190)
T ss_dssp             HTTSCEEEECCSEEEETTEEEESSCHHHHHH-----HCCSEEEEEECCHHHHHHHHHTSSSCS-----------------
T ss_pred             hCCCeEEECCcccchHHHHHHHhhhhhhhhh-----ccccceeeecCCHHHHHHHHHHhcccc-----------------
Confidence            234578888876532111       011111     467899999999999999988875211                 


Q ss_pred             CCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          180 FDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       180 ~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                 +.......++ +...++..+......+.....+++++++.++|++++.|.+.|+
T Consensus       138 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         138 -----------RDLDTASTIE-QHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             -----------SSCCCHHHHH-HHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             -----------CCcccHHHHH-HHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence                       2333444443 3444444444444444443345667789999999999998874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.65  E-value=1e-15  Score=113.81  Aligned_cols=120  Identities=18%  Similarity=0.139  Sum_probs=83.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh-CcceeehHHHHHHHHHcCCchH----HHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY-CLCHLATGDMLRSAVAAKTPLG----IKAKEAMDKGELVSDDLVVGIIDQAMKKP  106 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~-~~~~i~~~~li~~~~~~~~~~~----~~i~~~l~~~~~~~~~~~~~~l~~~l~~~  106 (245)
                      .+|+|.|+|||||||+++.|++.. +..+++.+++.+.........+    ......       ...+....+...+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~   75 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILYGG   75 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHTSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHH-------HHHHHHHHHHHHHHhh
Confidence            478999999999999999987655 7899999887665433211110    000000       0123444555566555


Q ss_pred             CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          107 SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       107 ~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .....+|+|+..........+..++...+. +..+|+|++|.+++.+|...|.
T Consensus        76 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~e~~~~R~~~R~  127 (152)
T d1ly1a_          76 DSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRG  127 (152)
T ss_dssp             SSCCEEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCG
T ss_pred             ccCCCcccccccCCHHHHHHHHHhhhhhcc-chhhhhcCCCHHHHHHHHHccC
Confidence            555678999888888777777777666654 4578999999999999999885

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.65  E-value=5.1e-16  Score=117.40  Aligned_cols=121  Identities=14%  Similarity=0.118  Sum_probs=74.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      ++|+|+|+|||||||+|+.|++.++..++...+.++.................    ......+.......+.   ...+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~   75 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL----ALTWKNITDLTVNFLL---AQND   75 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHH----HHHHHHHHHHHHHHHH---TTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHH----HHHHHHHHHHHHHHHh---cCCC
Confidence            47999999999999999999999987755444554443222111110000000    0001122222222222   3467


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      +++|+..........+..........+..+++|++|++++.+|+..|.
T Consensus        76 ~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  123 (176)
T d2bdta1          76 VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (176)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             cccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCC
Confidence            889988776666555444444444556678999999999999999985

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.62  E-value=4.4e-15  Score=114.00  Aligned_cols=174  Identities=14%  Similarity=0.087  Sum_probs=102.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC-----cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCH-------HHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC-----LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSD-------DLVVGII   99 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~l   99 (245)
                      ++|+|.|+|||||||+++.|++.++     +.+++.++..+............-..     ...+.       ......+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~   76 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEM-----RKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHH-----TTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhc-----cccchhhcccCHHHHHHHH
Confidence            3678899999999999999999984     34567677666544432211000000     00000       0111111


Q ss_pred             HHHHcCCCCCCceEEcCCCCCHHH-------HHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccC
Q 025970          100 DQAMKKPSCEKGFILDGFPRTVVQ-------AEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKF  172 (245)
Q Consensus       100 ~~~l~~~~~~~~~iidg~p~~~~~-------~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~  172 (245)
                      ...... ....++++++++.....       ...+...     ..|+.+|+|++|++++.+|+..|....          
T Consensus        77 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~~~~~~~~R~~~r~~~~----------  140 (194)
T d1nksa_          77 AEEARA-GGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-----INPSVIFLLEADPKIILSRQKRDTTRN----------  140 (194)
T ss_dssp             HHHHHH-TCSSEEEEEECSEEEETTEEEESSCHHHHHH-----HCCSEEEEEECCHHHHHHHHHHCTTTC----------
T ss_pred             HHHHHH-hCCCcEEEEccCchHHHHHHHHhHHHHHHhh-----hccccceEEecCHHHHHHHHHHhhhcc----------
Confidence            122111 12345666655432110       0111111     368999999999999999998875321          


Q ss_pred             CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          173 APPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       173 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                        +.....+.+.++...+..........+.....++.++++.+++++++.|.+.|+
T Consensus       141 ------------------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         141 ------------------RNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             ------------------CCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             ------------------cccchHHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence                              345556677777776666655555555444445666778999999999998874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=2.9e-15  Score=115.86  Aligned_cols=166  Identities=13%  Similarity=0.040  Sum_probs=96.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHH---------------HHHHHHHcCCCC---
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGI---------------KAKEAMDKGELV---   90 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~---------------~i~~~l~~~~~~---   90 (245)
                      +.|++|.|+|++||||||+|+.|. .+|++++++|.+.+...........               .+...+......   
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~   79 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA   79 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhh
Confidence            358999999999999999999995 6899999999988876554321111               111111000000   


Q ss_pred             CHHH----HHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCc
Q 025970           91 SDDL----VVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGR  166 (245)
Q Consensus        91 ~~~~----~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~  166 (245)
                      -...    ....+....... ....+++++.+.....          ....++.+|+++||++++.+|+..|.       
T Consensus        80 l~~~~~~~~~~~~~~~~~~~-~~~~vi~e~~~~~~~~----------~~~~~d~vI~v~a~~e~r~~Rl~~R~-------  141 (191)
T d1uf9a_          80 LEAVVHPEVRRLLMEELSRL-EAPLVFLEIPLLFEKG----------WEGRLHGTLLVAAPLEERVRRVMARS-------  141 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-CCSEEEEECTTTTTTT----------CGGGSSEEEEECCCHHHHHHHHHTTT-------
T ss_pred             hhhhhhHHHHHHHHhhhhhc-ccceEEEEeecccccc----------ccccceeEEEEecchhhHHHHHHhcc-------
Confidence            0000    111111111111 2245567764322111          11356899999999999999999884       


Q ss_pred             cccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhcC
Q 025970          167 SYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLSS  245 (245)
Q Consensus       167 ~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  245 (245)
                                                +.+.+.+..+++.    ..+........+  ++|+++.+++++...|...+++
T Consensus       142 --------------------------~~~~~~~~~~~~~----q~~~~~~~~~aD--~vI~N~~s~~~l~~~v~~il~~  188 (191)
T d1uf9a_         142 --------------------------GLSREEVLARERA----QMPEEEKRKRAT--WVLENTGSLEDLERALKAVLAE  188 (191)
T ss_dssp             --------------------------CCTTHHHHHHHTT----SCCHHHHHHHCS--EEECCSSHHHHHHHHHHHHHHS
T ss_pred             --------------------------cchHHHHHHHHHh----CCCHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence                                      2223344443332    222222222233  3588899999999999988753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.59  E-value=4.2e-15  Score=112.33  Aligned_cols=107  Identities=23%  Similarity=0.293  Sum_probs=67.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKG  111 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~  111 (245)
                      |.|+|+|+|||||||+|+.|+++||++++++++.++.........      ............+...+......    .+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~   74 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD------EEYDCPILDEDRVVDELDNQMRE----GG   74 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCC------SSSSCCCBCHHHHHHHHHHHHHH----CC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchh------HHhhhhhHHHHHHHHHhhhhhhc----CC
Confidence            578899999999999999999999999999999887632111000      00111222333333333332221    23


Q ss_pred             eEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          112 FILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       112 ~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ...+++......           ......+|+|+||++++.+|+..|.
T Consensus        75 ~~~~~~~~~~~~-----------~~~~~~~i~l~~~~~~~~~Rl~~r~  111 (173)
T d1rkba_          75 VIVDYHGCDFFP-----------ERWFHIVFVLRTDTNVLYERLETRG  111 (173)
T ss_dssp             EEEECSCCTTSC-----------GGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             cccchhHHHHHH-----------HhcCCCcceecCCHHHHHHHHHhcC
Confidence            444444332110           0234689999999999999999885

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.59  E-value=2.1e-14  Score=112.39  Aligned_cols=161  Identities=14%  Similarity=0.132  Sum_probs=97.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHH-----H------------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDD-----L------------   94 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~-----~------------   94 (245)
                      .+|.|+|++||||||+|+.|. ++|++++++|.+.++.+..+......+...+......++.     .            
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~   81 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhh
Confidence            578899999999999999997 5899999999999988777776666665555433222221     1            


Q ss_pred             ------HHHH----HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCC
Q 025970           95 ------VVGI----IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPAS  164 (245)
Q Consensus        95 ------~~~~----l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~  164 (245)
                            +...    +...... .....++++ .|.-...         .....++.+|+++||+++.++|+..|.     
T Consensus        82 ~~l~~i~hp~v~~~~~~~~~~-~~~~~vv~e-~~ll~e~---------~~~~~~d~ii~v~~~~~~r~~R~~~R~-----  145 (205)
T d1jjva_          82 LWLNNLLHPAIRERMKQKLAE-QTAPYTLFV-VPLLIEN---------KLTALCDRILVVDVSPQTQLARSAQRD-----  145 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-CCSSEEEEE-CTTTTTT---------TCGGGCSEEEEEECCHHHHHHHHC--------
T ss_pred             hHhhcccCHHHHHHHHHHHhh-ccCCeEEEE-ecccccc---------chhhhhhheeeecchHHHHHHHHHhcC-----
Confidence                  1111    1112221 112334555 3443221         111457899999999999999999874     


Q ss_pred             CccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          165 GRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       165 ~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                  +.+.+.+..+++..   +. ........+  ++|+++.+.++....|.+.+
T Consensus       146 ----------------------------~~s~e~~~~~~~~Q---~~-~~~k~~~aD--~vI~N~~~l~~~~~~l~~~i  190 (205)
T d1jjva_         146 ----------------------------NNNFEQIQRIMNSQ---VS-QQERLKWAD--DVINNDAELAQNLPHLQQKV  190 (205)
T ss_dssp             ------------------------------CHHHHHHHHHHS---CC-HHHHHHHCS--EEEECCSCHHHHHHHHHHHH
T ss_pred             ----------------------------CchHHHHHHHHHhC---CC-HHHHHHhCC--EEEECCCChHHHHHHHHHHH
Confidence                                        44567777776542   11 122222223  45788889887777665544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=2.8e-14  Score=112.38  Aligned_cols=178  Identities=16%  Similarity=0.116  Sum_probs=92.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCC-CCCHHHHHHHH-HHHHcC--
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGII-DQAMKK--  105 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~l-~~~l~~--  105 (245)
                      ++++|+|.|+.||||||+++.|++.+.....-+.     ....+++.|..++.++.... .+++....-+. ..+...  
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~   76 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLK-----FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   76 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEE-----SSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEE-----ECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999853222110     01234566777777766543 33333222111 111111  


Q ss_pred             -----CCCCCceEEcCCCCCHHHHH--------HHHHHH--HhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccc
Q 025970          106 -----PSCEKGFILDGFPRTVVQAE--------KLDEML--EKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHT  170 (245)
Q Consensus       106 -----~~~~~~~iidg~p~~~~~~~--------~l~~~~--~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~  170 (245)
                           ...+..+|.|.|..+....+        .+.+..  ......||++|||++|+.....|...+..+         
T Consensus        77 ~i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~---------  147 (214)
T d1tmka_          77 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE---------  147 (214)
T ss_dssp             HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSS---------
T ss_pred             HHHHHHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchh---------
Confidence                 11234577787643321110        011221  112368999999999999888886555311         


Q ss_pred             cCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeC-CCChhHHHHHHHHhhc
Q 025970          171 KFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHA-EKPPKEVTVEVQKVLS  244 (245)
Q Consensus       171 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~-~~~~e~v~~~i~~~l~  244 (245)
                                           .-.+.+..++-.+.|.+........  ....++.||+ +.+++++++.|.+.++
T Consensus       148 ---------------------~~e~~~~~~~v~~~Y~~l~~~~~~~--~~~~~~iID~s~~~~eev~~~I~~~v~  199 (214)
T d1tmka_         148 ---------------------RYETVKFQEKVKQTFMKLLDKEIRK--GDESITIVDVTNKGIQEVEALIWQIVE  199 (214)
T ss_dssp             ---------------------TTCCHHHHHHHHHHHHHHHHHHHHT--TCTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ---------------------hhhhHHHHHHHHHHHHHHHHHhhhh--CCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence                                 0112333333334454433322111  2346888997 4799999988887764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=6.2e-14  Score=106.63  Aligned_cols=105  Identities=17%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPS  107 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~  107 (245)
                      .++|.+|++.|+|||||||+++.|++.+++.+++.|++...                        ..+...+...+..  
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~~--   64 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALRQ--   64 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHHT--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHHC--
Confidence            35688999999999999999999999999999999876322                        1122333333332  


Q ss_pred             CCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          108 CEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       108 ~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                       +..+|+|+...+..+...+..+....+..+ .+|+|++|.+++.+|...|..
T Consensus        65 -g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~-~~v~l~~~~e~~~~Rn~~R~~  115 (172)
T d1yj5a2          65 -GKRVVIDNTNPDVPSRARYIQCAKDAGVPC-RCFNFCATIEQARHNNRFREM  115 (172)
T ss_dssp             -TCCEEEESCCCSHHHHHHHHHHHHHHTCCE-EEEEECCCHHHHHHHHHHHHH
T ss_pred             -CCCceeeCcCCCHHHHHHHHHHHHhcCCCE-EEEEeCCCHHHHHHHHHHhcc
Confidence             457999998888888888877777776654 688999999999999998864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.50  E-value=5.7e-13  Score=104.87  Aligned_cols=40  Identities=33%  Similarity=0.562  Sum_probs=37.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAV   70 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~   70 (245)
                      +++|+|.|||||||||+|+.||++||++|+|+++++|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            5788999999999999999999999999999999999753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.8e-13  Score=107.12  Aligned_cols=162  Identities=16%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHHH----------
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG-----ELVSDDLVV----------   96 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~----------   96 (245)
                      .+|.|+|++||||||+|+.|+ ++|++++++|.+.++.+..+......+.+.+...     ..+....+.          
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            378899999999999999996 6899999999999988776666555554443321     222222111          


Q ss_pred             --------HHHHHHHcC---CCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCC
Q 025970           97 --------GIIDQAMKK---PSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASG  165 (245)
Q Consensus        97 --------~~l~~~l~~---~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~  165 (245)
                              .++...+..   ......++++. |.-...         .....++.+|+++||+++..+|+..|.      
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll~e~---------~~~~~~~~iI~V~a~~e~r~~R~~~R~------  146 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVEN---------SLYKKANRVLVVDVSPETQLKRTMQRD------  146 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTT---------TGGGGCSEEEEEECCHHHHHHHHHHHH------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceee-eecccc---------cccccCCEEEEEeCCHHHHHHHHHHhh------
Confidence                    111111111   01122333432 322211         111356889999999999999999874      


Q ss_pred             ccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          166 RSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       166 ~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                                 ..+.+.+..++...   + +........+  ++|+++.+++++..+|.+.+
T Consensus       147 ---------------------------~~~~~~~~~~~~~Q---~-~~~~k~~~aD--~vI~N~~~le~l~~~v~~l~  191 (208)
T d1vhta_         147 ---------------------------DVTREHVEQILAAQ---A-TREARLAVAD--DVIDNNGAPDAIASDVARLH  191 (208)
T ss_dssp             ---------------------------TCCHHHHHHHHHHS---C-CHHHHHHHCS--EEEECSSCTTSHHHHHHHHH
T ss_pred             ---------------------------hhhHHHHHHHHHhC---C-CHHHHHHhCC--EEEECCCCHHHHHHHHHHHH
Confidence                                       23455566555431   2 2222233333  56889999999988877654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=2.2e-14  Score=112.00  Aligned_cols=173  Identities=14%  Similarity=0.097  Sum_probs=88.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh---CcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCC----HHHHHHHHHHH-H
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY---CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDQA-M  103 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~l~~~-l  103 (245)
                      |+|+|.|++||||||+++.|++.+   |+.++-...     ...+++.+..+...+..+....    ......+.... .
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~-----P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~   75 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF-----PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES-----SCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec-----CCCCCccchhhhhhhccccccccccchHHHHHHHHHHHH
Confidence            689999999999999999999877   444332200     0012333333333333222110    11111111110 0


Q ss_pred             cC-------CCCCCceEEcCCCCCHHHHH-------------HHHHHHH---hcCCCccEEEEEecCHHHHHHHHhCCcc
Q 025970          104 KK-------PSCEKGFILDGFPRTVVQAE-------------KLDEMLE---KQGTKIDKVLNFAIDDSILEERITGRWI  160 (245)
Q Consensus       104 ~~-------~~~~~~~iidg~p~~~~~~~-------------~l~~~~~---~~~~~~~~vi~L~~~~e~~~~R~~~r~~  160 (245)
                      ..       ...+..+|+|.+..+.....             .+...+.   .....||++|+|++|++++.+|+.+|..
T Consensus        76 ~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~  155 (208)
T d1gsia_          76 GAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ  155 (208)
T ss_dssp             TTHHHHHHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhc
Confidence            00       01123566676543221110             0111111   1236899999999999999999999863


Q ss_pred             cCCCCccccccCCCCCCCCCCCCCCCccccCCCCcHHHHHHHH-HHHHHhhHHHHHHHHh--cCcEEEEeCCCChhHHHH
Q 025970          161 HPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDDTAQVLKSRL-EAFHKQTEPVIDYYAK--KGVLAQLHAEKPPKEVTV  237 (245)
Q Consensus       161 ~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl-~~~~~~~~~l~~~~~~--~~~~~~id~~~~~e~v~~  237 (245)
                      ..+...                      ..+-+-.. .+.+++ +.|.+       +..+  ...+++||++.++++|.+
T Consensus       156 ~~~~~~----------------------~d~~e~~~-~y~~~~~~~Y~~-------~~~~~~~~~~~vIDa~~~~e~V~~  205 (208)
T d1gsia_         156 RDPGRA----------------------RDNYERDA-ELQQRTGAVYAE-------LAAQGWGGRWLVVGADVDPGRLAA  205 (208)
T ss_dssp             HCTTCC----------------------CCTTTTCH-HHHHHHHHHHHH-------HHHHTTTSEEEEECTTCCHHHHHH
T ss_pred             cccccc----------------------ccchhhHH-HHHHHHHHHHHH-------HHHhcCCCCEEEEeCCCCHHHHHH
Confidence            221100                      00011122 333333 22322       2222  235899999999999998


Q ss_pred             HH
Q 025970          238 EV  239 (245)
Q Consensus       238 ~i  239 (245)
                      +|
T Consensus       206 ~i  207 (208)
T d1gsia_         206 TL  207 (208)
T ss_dssp             HH
T ss_pred             hh
Confidence            87

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=3.4e-14  Score=106.02  Aligned_cols=37  Identities=19%  Similarity=0.401  Sum_probs=33.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSA   69 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~   69 (245)
                      .|+|+|+|||||||+|+.||+++|+++++.+.+....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~   40 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR   40 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhh
Confidence            5889999999999999999999999999998876554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=6e-14  Score=110.38  Aligned_cols=41  Identities=24%  Similarity=0.424  Sum_probs=38.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVA   71 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~   71 (245)
                      +|+|+|.|||||||||+|+.|+++||++|+|+++++|....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            45999999999999999999999999999999999998654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.47  E-value=2.3e-14  Score=108.57  Aligned_cols=114  Identities=18%  Similarity=0.143  Sum_probs=66.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehH-HHHHHHHHcCC-----chHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG-DMLRSAVAAKT-----PLGIKAKEAMDKGELVSDDLVVGIIDQAM  103 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~-~li~~~~~~~~-----~~~~~i~~~l~~~~~~~~~~~~~~l~~~l  103 (245)
                      .+.+|+|.|+|||||||+|+.|++++|.++++++ +.++..+....     ..........       .......+....
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~   75 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI-------MQIAADVAGRYA   75 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHH-------HHHHHHHHHHHH
Confidence            4678999999999999999999999998776542 33333222110     0000000000       001111221111


Q ss_pred             cCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          104 KKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       104 ~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                         .....+|+++.+....... +.    .. ..+..+++|+++++++.+|+..|.
T Consensus        76 ---~~~~~vi~~~~~~~~~~~~-~~----~~-~~~~~~i~l~~~~e~~~~R~~~R~  122 (176)
T d1zp6a1          76 ---KEGYFVILDGVVRPDWLPA-FT----AL-ARPLHYIVLRTTAAEAIERCLDRG  122 (176)
T ss_dssp             ---HTSCEEEECSCCCTTTTHH-HH----TT-CSCEEEEEEECCHHHHHHHHHTTC
T ss_pred             ---hcCCCeEecccccHHHHHH-HH----hc-ccccccccCCCCHHHHHHHHHhCC
Confidence               2245678888765432222 11    12 345688999999999999999885

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.37  E-value=4.8e-13  Score=100.99  Aligned_cols=124  Identities=15%  Similarity=0.143  Sum_probs=63.1

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCccee--ehHHHHHHHHHcCCchHHHHHHHHHcCCCC--CH--HHHHHHHHHHHc
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHL--ATGDMLRSAVAAKTPLGIKAKEAMDKGELV--SD--DLVVGIIDQAMK  104 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i--~~~~li~~~~~~~~~~~~~i~~~l~~~~~~--~~--~~~~~~l~~~l~  104 (245)
                      +++|+|+|+|||||||+|+.|++.++..++  +.+.+.......  .........+..+...  .+  ..+...+.....
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLK--MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGG--GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhcccccc--ccchhHHhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999987655  444332221000  0000000000000000  00  112222222111


Q ss_pred             CC-CCCCceEEcC-CCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          105 KP-SCEKGFILDG-FPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       105 ~~-~~~~~~iidg-~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      .. .....++++. +.........+....   .......|+|+||++++.+|...|.
T Consensus        81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~v~l~~~~e~~~~R~~~R~  134 (178)
T d1qhxa_          81 AMARAGARIIIDDVFLGGAAAQERWRSFV---GDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHTTCEEEEEECCTTTHHHHHHHHHHH---TTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHhhccceEEeeeecchHHHHHHHHHhh---cCCceeecccCCCHHHHHHHHHhcC
Confidence            11 1223455554 333333333332222   2345678999999999999998875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.4e-12  Score=101.32  Aligned_cols=29  Identities=21%  Similarity=0.186  Sum_probs=25.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCH   59 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~   59 (245)
                      -++|+|.|+.||||||+++.|++.+.-..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~~~   30 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCEDWE   30 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999885433

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.7e-12  Score=100.27  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=27.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      .|++|+|.|+.||||||+++.|++.++-..+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            3789999999999999999999999975544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=9.9e-13  Score=101.60  Aligned_cols=34  Identities=21%  Similarity=0.101  Sum_probs=30.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ...+|++|+|.|+.||||||+++.|++.++...+
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            5678999999999999999999999999976544

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.24  E-value=1e-11  Score=97.00  Aligned_cols=124  Identities=11%  Similarity=0.040  Sum_probs=70.2

Q ss_pred             ccCCCCCcEEEEECCCCCChhHHHHHHHhHh----C--cceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH
Q 025970           25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY----C--LCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGI   98 (245)
Q Consensus        25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~----~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~   98 (245)
                      .+...++++|+|+|.|||||||+++.|++++    +  ..+++.| .+|+.+..+..+....+.          .....+
T Consensus        18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD-~iR~~l~~~l~ys~~~r~----------~~~~r~   86 (208)
T d1m7ga_          18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD-NIRFGLNKDLGFSEADRN----------ENIRRI   86 (208)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH-HHTTTTTTTCCSSHHHHH----------HHHHHH
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcch-HHHHhhcCCCCCChhHHH----------HHHHHH
Confidence            3556789999999999999999999999765    3  3456664 445433222111111110          111111


Q ss_pred             HHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHh-----cCCCccEEEEEecCHHHHHHHHhCCc
Q 025970           99 IDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEK-----QGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus        99 l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~-----~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ...+......+..+|++.............+++..     ....+-+.||++||.+++.+|-..+.
T Consensus        87 ~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~  152 (208)
T d1m7ga_          87 AEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGL  152 (208)
T ss_dssp             HHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCH
T ss_pred             HHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccc
Confidence            11111111123456676655555544444444321     12344578999999999999865543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.3e-12  Score=97.59  Aligned_cols=27  Identities=19%  Similarity=0.086  Sum_probs=25.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      |.+|.|.|++||||||+|+.|++.++.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            788999999999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.1e-11  Score=94.92  Aligned_cols=38  Identities=18%  Similarity=0.149  Sum_probs=31.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      ...++++|+|+|+|||||||+|+.|+++++..+++++.
T Consensus        15 ~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~   52 (195)
T d1x6va3          15 GGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT   52 (195)
T ss_dssp             CSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccc
Confidence            44578999999999999999999999999766555543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=3.8e-10  Score=85.78  Aligned_cols=162  Identities=17%  Similarity=0.187  Sum_probs=85.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHc----CCc----hHHHHHHHHHcCCCCCH----------
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAA----KTP----LGIKAKEAMDKGELVSD----------   92 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~----~~~----~~~~i~~~l~~~~~~~~----------   92 (245)
                      +.+|+|+||+||||||+++.|.+.+.-..++....-|. ...    +..    -...+......+..+..          
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~-~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA-PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccC-CCccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            46899999999999999999999884333332211111 000    000    01222233333322110          


Q ss_pred             HHHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccC
Q 025970           93 DLVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKF  172 (245)
Q Consensus        93 ~~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~  172 (245)
                      ......+...+..   +..++++..+   .-...+..    ....+..++++..|.+++.+|+..|.             
T Consensus        81 g~~~~~~~~~~~~---g~~~i~~~~~---~g~~~l~~----~~~~~~~i~i~~~s~e~L~~RL~~Rg-------------  137 (182)
T d1znwa1          81 GTLAQPVRAAAAT---GVPVLIEVDL---AGARAIKK----TMPEAVTVFLAPPSWQDLQARLIGRG-------------  137 (182)
T ss_dssp             EEEHHHHHHHHHH---TCCEEEECCH---HHHHHHHH----HCTTSEEEEEECSCHHHHHHHHHTTS-------------
T ss_pred             ccccchhhhhhhc---CCcccccccc---chhhhhhh----cCcceeEEeeecccHHHHHHHhhhcC-------------
Confidence            0011111111111   2235555432   22222222    22455555556678899999999884             


Q ss_pred             CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhh
Q 025970          173 APPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVL  243 (245)
Q Consensus       173 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l  243 (245)
                                          .++.+.+++|++.+.....    +....+ .+.+  +.++++.+++|.++|
T Consensus       138 --------------------~~~~e~I~~Rl~~~~~e~~----~~~~fD-~vI~--Nddle~a~~~l~~iI  181 (182)
T d1znwa1         138 --------------------TETADVIQRRLDTARIELA----AQGDFD-KVVV--NRRLESACAELVSLL  181 (182)
T ss_dssp             --------------------CSCHHHHHHHHHHHHHHHH----GGGGSS-EEEE--CSSHHHHHHHHHHHH
T ss_pred             --------------------cchHHHHHHHHHHHHHHHh----hHhcCC-EEEE--CcCHHHHHHHHHHHh
Confidence                                4567889999987654321    222222 3334  358999999998875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.03  E-value=1.3e-10  Score=87.36  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=27.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ++++++|+|+|+|||||||+|+.|+++++.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            467899999999999999999999999854

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=1e-10  Score=90.60  Aligned_cols=123  Identities=12%  Similarity=0.058  Sum_probs=68.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCc-----ceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCL-----CHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKK  105 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~  105 (245)
                      |.+|++.|.|||||||++++|++.++.     ..++.|. +|...................+...........+...+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ-YRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc-eehhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            778999999999999999999988853     4567754 5554433211100000000000000011222222222221


Q ss_pred             C--CCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHH
Q 025970          106 P--SCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERI  155 (245)
Q Consensus       106 ~--~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~  155 (245)
                      .  .....+|+|+......+...+..++...+. +.+++.+.|+++.+.++-
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  131 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGY-KTFFVESICVDPEVIAAN  131 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEECCCCHHHHHHH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCC-eEEEEEeeccHHHHHHHh
Confidence            1  123457788877777777777766655543 446778888888776653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.99  E-value=5.6e-10  Score=85.23  Aligned_cols=43  Identities=19%  Similarity=0.115  Sum_probs=34.8

Q ss_pred             hhHHHHHHHHhcc-CCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           14 VDMMTELLRRFKC-SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        14 ~~~~~~~~~~~~~-~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .+.++.+...+.. .+..|.+|.|.|++||||||+|+.|++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_           4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4556666766644 666788899999999999999999999875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=4.8e-10  Score=85.64  Aligned_cols=163  Identities=18%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcce-eehHHHHHHHHHc----CC----chHHHHHHHHHcCCCCCHH--------HHH
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCH-LATGDMLRSAVAA----KT----PLGIKAKEAMDKGELVSDD--------LVV   96 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~-i~~~~li~~~~~~----~~----~~~~~i~~~l~~~~~~~~~--------~~~   96 (245)
                      |+|+||+||||||+++.|++.+.-.+ +.....-|. ...    +.    --...+...+..|..+...        +..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~-~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~   82 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSC-CCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCC-CCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecch
Confidence            78999999999999999999874211 111000000 000    00    0112333444444332110        011


Q ss_pred             HHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCC
Q 025970           97 GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPK  176 (245)
Q Consensus        97 ~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~  176 (245)
                      ..+...+..   +..+|++..+....+..   ..   .+..+..++++..+.+++.+|+..|.                 
T Consensus        83 ~~i~~~~~~---g~~~i~~~~~~~~~~lk---~~---~~~~~~~i~~~~~~~e~l~~RL~~Rg-----------------  136 (186)
T d1gkya_          83 ASVKQVSKS---GKTCILDIDMQGVKSVK---AI---PELNARFLFIAPPSVEDLKKRLEGRG-----------------  136 (186)
T ss_dssp             HHHHHHHHH---TSEEEEECCHHHHHHHH---TC---GGGCCEEEEEECSCHHHHHHHHHHHS-----------------
T ss_pred             hhHHHHhcC---CCeEEecchHHHHHHHH---Hh---hcccceEEEecCCcHHHHHHHHHhhc-----------------
Confidence            111121111   23566776543332222   11   12345667788899999999998874                 


Q ss_pred             CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          177 VHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                      .++.+.+.+|+..+....   ...+...-.++.++  .+++..++.|.++|.
T Consensus       137 ----------------~~~~~~I~~Rl~~~~~e~---~~~~~~~fd~vI~N--~dle~a~~~l~~iI~  183 (186)
T d1gkya_         137 ----------------TETEESINKRLSAAQAEL---AYAETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             ----------------CSCHHHHHHHHHHHHHHH---HHHTTTCSSEEEEC--SSHHHHHHHHHHHHH
T ss_pred             ----------------cchhHHHHHHHHHHHHHH---HhhhhcCCCEEEEC--cCHHHHHHHHHHHHH
Confidence                            456788888887754322   11111111233443  579999999998874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=2.2e-09  Score=82.21  Aligned_cols=161  Identities=17%  Similarity=0.175  Sum_probs=82.4

Q ss_pred             EEEECCCCCChhHHHHHHHhHhCcce-eehHHHHHHHHHcC----C----chHHHHHHHHHcCCCCCHH--------HHH
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYCLCH-LATGDMLRSAVAAK----T----PLGIKAKEAMDKGELVSDD--------LVV   96 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~~~~-i~~~~li~~~~~~~----~----~~~~~i~~~l~~~~~~~~~--------~~~   96 (245)
                      |+|+||+||||||+++.|++.++-.+ .......|. ...+    .    .-...+......|..+...        +..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~-~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~   81 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRN-PRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK   81 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccC-CCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceeccc
Confidence            78999999999999999999886332 111000000 0000    0    0012233333333322110        011


Q ss_pred             HHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCC
Q 025970           97 GIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPK  176 (245)
Q Consensus        97 ~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~  176 (245)
                      ..+...+..   +..++++..+   .-..    .+......+..++++..|.+++.+|+..|.                 
T Consensus        82 ~~v~~~~~~---g~~~~~~~~~---~~~~----~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~-----------------  134 (190)
T d1lvga_          82 EAVRAVQAM---NRICVLDVDL---QGVR----SIKKTDLCPIYIFVQPPSLDVLEQRLRLRN-----------------  134 (190)
T ss_dssp             HHHHHHHHT---TCEEEEECCH---HHHH----HHTTSSCCCEEEEEECSCHHHHHHHHHHHT-----------------
T ss_pred             chhhhhhcC---CCceeecchH---hhhh----hhhhccccceEEEEecchHHHHHHHHhhcc-----------------
Confidence            111222211   2345555432   1111    222344556556666667789999998763                 


Q ss_pred             CCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcC--cEEEEeCCCChhHHHHHHHHhhc
Q 025970          177 VHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKG--VLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~--~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                      .++.+.+.+|+..+.....    +....+  .++.++  .+.|+.++.|.++|.
T Consensus       135 ----------------~~~~e~i~~rl~~~~~~~~----~~~~~~~fd~iI~N--~dle~a~~~l~~iI~  182 (190)
T d1lvga_         135 ----------------TETEESLAKRLAAARTDME----SSKEPGLFDLVIIN--DDLDKAYATLKQALS  182 (190)
T ss_dssp             ----------------CSCHHHHHHHHHHHHHHTT----GGGSTTTCSEEEEC--SSHHHHHHHHHHHTH
T ss_pred             ----------------ccchHHHHHHHHHHHHHHH----hhhhcCCCCEEEEC--cCHHHHHHHHHHHHH
Confidence                            5677889999887655322    111111  134444  468888888877654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.75  E-value=4.6e-09  Score=84.09  Aligned_cols=125  Identities=18%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh--CcceeehHHHHHHHHHcCCchHHHHHHHHHcC----CCCCHHHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY--CLCHLATGDMLRSAVAAKTPLGIKAKEAMDKG----ELVSDDLVVGIID  100 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~----~~~~~~~~~~~l~  100 (245)
                      ....|..|+|.|||||||||+++.|++.+  ++..++++.+....    .............-    ......+....+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH----PNFDELVKLYEKDVVKHVTPYSNRMTEAIIS  103 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS----TTHHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHh----ccCcccchhhhHHHHHHHHhhccchHHHHHH
Confidence            44567889999999999999999999998  45677876653211    01111111000000    0000111111222


Q ss_pred             HHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          101 QAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       101 ~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      ..+.   .....+++...........+...+...+.. ..+++++++.+....|...|.
T Consensus       104 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~R~  158 (273)
T d1gvnb_         104 RLSD---QGYNLVIEGTGRTTDVPIQTATMLQAKGYE-TKMYVMAVPKINSYLGTIERY  158 (273)
T ss_dssp             HHHH---HTCCEEECCCCCCSHHHHHHHHHHHTTTCE-EEEEEECCCHHHHHHHHHHHH
T ss_pred             HHHh---hCCCCcccccccchHHHHHHHHHHHHcCCe-EEEEecCCCchhhhhHHhcCC
Confidence            2221   124566776666655555555555545443 357778899999988887763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.6e-08  Score=78.22  Aligned_cols=163  Identities=13%  Similarity=0.186  Sum_probs=88.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCc--ceeehHHHHHHHHHcC----Cc----hHHHHHHHHHcCCCCCHH-------
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCL--CHLATGDMLRSAVAAK----TP----LGIKAKEAMDKGELVSDD-------   93 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~--~~i~~~~li~~~~~~~----~~----~~~~i~~~l~~~~~~~~~-------   93 (245)
                      +++|+|+||+||||||+.+.|.+.+..  ..++....-|. ..++    ..    --..+...+..|..+...       
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~-~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~Y   80 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ-PRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   80 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccC-CCccccccccceeecHHHHHHHhhhhhheeEEEECCcee
Confidence            578999999999999999999998742  22221111110 0000    00    113444555555433211       


Q ss_pred             -HHHHHHHHHHcCCCCCCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccC
Q 025970           94 -LVVGIIDQAMKKPSCEKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKF  172 (245)
Q Consensus        94 -~~~~~l~~~l~~~~~~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~  172 (245)
                       +....+...+.   .+..+++|.-+...   ..+..    ....+-.++++..+.+++.+|+..|.             
T Consensus        81 Gt~~~~v~~~~~---~g~~~ildid~~g~---~~lk~----~~~~~~~ifi~pps~~~l~~RL~~Rg-------------  137 (205)
T d1s96a_          81 GTSREAIEQVLA---TGVDVFLDIDWQGA---QQIRQ----KMPHARSIFILPPSKIELDRRLRGRG-------------  137 (205)
T ss_dssp             EEEHHHHHHHHT---TTCEEEEECCHHHH---HHHHH----HCTTCEEEEEECSSHHHHHHHHHTTS-------------
T ss_pred             ccccchHHHHHh---cCCceeecCcHHHH---HHHHh----hhcccceeeeeccchHHHHHHHHhcC-------------
Confidence             11112222222   23467777553332   22222    22344445566677788999999874             


Q ss_pred             CCCCCCCCCCCCCCccccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          173 APPKVHGFDDVTGEPLIQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       173 ~~p~~~~~~~~~~~~l~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                                          .++.+.++.|+........    ++... .++.++  .+++..+..|.++|.
T Consensus       138 --------------------~~~~~~i~~Rl~~a~~E~~----~~~~f-D~vIvN--ddl~~a~~el~~iI~  182 (205)
T d1s96a_         138 --------------------QDSEEVIAKRMAQAVAEMS----HYAEY-DYLIVN--DDFDTALTDLKTIIR  182 (205)
T ss_dssp             --------------------CSCHHHHHHHHHHHHHHHT----TGGGS-SEEEEC--SSHHHHHHHHHHHHH
T ss_pred             --------------------CchHHHHHHHHHHHHHHHH----HHhCC-CEEEEC--cCHHHHHHHHHHHHH
Confidence                                4566777888876554432    11222 344554  478888888888763

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.69  E-value=3.4e-09  Score=79.67  Aligned_cols=34  Identities=15%  Similarity=0.111  Sum_probs=30.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      -++.|+|+|+|||||||+|+.|+++||.+++..+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            3678999999999999999999999999988654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.67  E-value=5.7e-08  Score=80.27  Aligned_cols=27  Identities=30%  Similarity=0.295  Sum_probs=24.5

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +..+|+|.|+.||||||+++.|++.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            457899999999999999999999874

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.61  E-value=1.1e-07  Score=78.43  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=23.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      .+|+|.|+.||||||+++.|++.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            47999999999999999999998854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.61  E-value=2.8e-07  Score=75.75  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=21.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      -++|+|.|+.||||||+++.|++.++
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence            35699999999999999999998874

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=3e-08  Score=54.30  Aligned_cols=38  Identities=71%  Similarity=1.093  Sum_probs=35.1

Q ss_pred             CCcccCCCCccccccCCCCCCCCCCCCCCCccccCCCC
Q 025970          157 GRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKDD  194 (245)
Q Consensus       157 ~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~~  194 (245)
                      .|++++.+|+.||..|+||..+++++.|++.|++|.+|
T Consensus         1 GRr~C~~cG~~Yh~~~~ppk~~g~CD~cg~~L~qR~DD   38 (38)
T d1akya2           1 GRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDD   38 (38)
T ss_dssp             TEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             CccCCcCccchhhhhccCcCcCCccCCCCCEeeecCCC
Confidence            36788999999999999999999999999999999875

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.44  E-value=3e-08  Score=53.89  Aligned_cols=36  Identities=67%  Similarity=1.317  Sum_probs=33.5

Q ss_pred             CcccCCCCccccccCCCCCCCCCCCCCCCccccCCC
Q 025970          158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQRKD  193 (245)
Q Consensus       158 r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~~~  193 (245)
                      |++++.+|+.||..|+||..++++|.||..|++|.|
T Consensus         2 R~vc~~cG~~Yh~~~~pPk~~g~CD~cg~~L~qR~D   37 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQRED   37 (37)
T ss_dssp             EEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred             ceeeCCcCChhhhccCCccccCCccCCCCcCEecCC
Confidence            678999999999999999999999999999998864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.2e-07  Score=77.36  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhC-------cceeehHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYC-------LCHLATGDML   66 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~-------~~~i~~~~li   66 (245)
                      ..+.|.+|.|.|++||||||+|+.|++.+.       +.+|++|+..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            456799999999999999999999998873       4578888774

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.36  E-value=1.6e-07  Score=73.96  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRS   68 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~   68 (245)
                      .+|.|+|++||||||+|+.|++++|+.+++..+.+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~   38 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD   38 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHH
Confidence            3789999999999999999999999999995444444

>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.27  E-value=2.6e-07  Score=47.42  Aligned_cols=30  Identities=67%  Similarity=1.113  Sum_probs=27.4

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          162 PASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       162 ~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      +.+|+.||+.|+||+.+++||.|++.|++|
T Consensus         1 P~sG~~Yhv~f~PPk~~g~cD~cg~~L~qR   30 (30)
T d1ak2a2           1 PQSGRSYHEEFNPPKEPMKDDITGEPLIRR   30 (30)
T ss_dssp             TTTCCEEBTTTBCCSSTTBCTTTCCBCEEC
T ss_pred             CCCCCCccccccCCCCCCccCCCCCCcccC
Confidence            357999999999999999999999998876

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=2e-07  Score=49.97  Aligned_cols=35  Identities=66%  Similarity=1.087  Sum_probs=32.0

Q ss_pred             CCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          157 GRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       157 ~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      .|++++.+|+.||..|+||..++++|.|++.|++|
T Consensus         1 GRr~c~~cG~~Yh~~~~PPk~~g~CD~cg~~L~qR   35 (35)
T d1e4va2           1 GRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR   35 (35)
T ss_dssp             TEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred             CccCCcCcCChhhhccCccccCCcccCCCCEeecC
Confidence            36788999999999999999999999999998875

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.19  E-value=1.4e-06  Score=70.02  Aligned_cols=38  Identities=13%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhC---c--ceeehHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYC---L--CHLATGDML   66 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~---~--~~i~~~~li   66 (245)
                      .+.++|.|.|++||||||+++.|++.++   +  .+|+.|+..
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            3456999999999999999999988773   3  478888763

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=8.5e-07  Score=69.40  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceee
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA   61 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~   61 (245)
                      ...++.++|+||||+||||+++.|++.++..++.
T Consensus        32 ~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          32 GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            3344467899999999999999999999877654

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.14  E-value=4.4e-07  Score=48.57  Aligned_cols=34  Identities=41%  Similarity=0.616  Sum_probs=31.4

Q ss_pred             CcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          158 RWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       158 r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      |++++.+|+.||..|.||..++++|.|+..|++|
T Consensus         2 Rr~C~~CG~~Yh~~~~pPk~~g~CD~cG~~L~qR   35 (35)
T d1zina2           2 RRICRNCGATYHLIFHPPAKPGVCDKCGGELYQR   35 (35)
T ss_dssp             EEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             ccCCcCcCchhccccCCCCCCCcCCCCCCCcccC
Confidence            6778999999999999999999999999988775

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=1.5e-06  Score=69.86  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             ccCCCCCcEEEEECCCCCChhHHHHHHHhHh--------CcceeehHHH
Q 025970           25 KCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY--------CLCHLATGDM   65 (245)
Q Consensus        25 ~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~--------~~~~i~~~~l   65 (245)
                      ....++|.+|.|.|++||||||+|..|.+.+        .+.++|+|++
T Consensus        21 ~~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          21 ETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             TTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             hcCCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            4466778999999999999999998776554        3466899887

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=0.00013  Score=48.92  Aligned_cols=99  Identities=20%  Similarity=0.238  Sum_probs=62.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcceeehHHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCce
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDMLRSAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDQAMKKPSCEKGF  112 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~  112 (245)
                      .|++.||.+|-|||++..|++.+.++.|.....--  ..              .|    ++.+...+    +.+.....+
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfel--ak--------------sg----neklfehf----nkladednv   57 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFEL--AK--------------SG----NEKLFEHF----NKLADEDNV   57 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHH--HH--------------HC----HHHHHHHH----HHHTTCCSE
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhh--hh--------------cc----CHHHHHHH----Hhhccccce
Confidence            68899999999999999999999999886543210  00              01    11111111    111223356


Q ss_pred             EEcCC---------------CCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCc
Q 025970          113 ILDGF---------------PRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRW  159 (245)
Q Consensus       113 iidg~---------------p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~  159 (245)
                      |+|.|               -.+..|....+.-+    ..-..++||++++.++.+|+.-|.
T Consensus        58 iidrfvysnlvyakkfkdysilterqlrfiedki----kakakvvylhadpsvikkrlrvrg  115 (164)
T d2axpa1          58 IIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKI----KAKAKVVYLHADPSVIKKRLRVRG  115 (164)
T ss_dssp             EEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHH----TTTEEEEEEECCHHHHHHHHHHHT
T ss_pred             eeehhhhhhhHHHhhcccceehhHHHHHHHHHHh----hhheeEEEEecChHHHHHHhcccc
Confidence            66643               23445555554433    233579999999999999998885

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=2.2e-06  Score=66.97  Aligned_cols=33  Identities=42%  Similarity=0.603  Sum_probs=27.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .++.++|+||||+||||+++.+++.++..+...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            455678999999999999999999998875544

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=98.07  E-value=7e-07  Score=47.79  Aligned_cols=35  Identities=49%  Similarity=0.736  Sum_probs=31.7

Q ss_pred             CCcccCCCCccccccCCCCCCCCCCCCCCCccccC
Q 025970          157 GRWIHPASGRSYHTKFAPPKVHGFDDVTGEPLIQR  191 (245)
Q Consensus       157 ~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l~~~  191 (245)
                      .|++++.+|+.||..|.||..++++|.|+..|++|
T Consensus         1 GR~~C~~CG~~Yh~~~~pPk~~g~CD~cg~~L~qR   35 (35)
T d1s3ga2           1 GRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQR   35 (35)
T ss_dssp             SEEEETTTCCEEETTTBCCSBTTBCTTTCCBEECC
T ss_pred             CccCCcCcCchhccccCCCCCCCccCCCCCCceeC
Confidence            36778999999999999999999999999988765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.04  E-value=2.2e-06  Score=67.63  Aligned_cols=33  Identities=30%  Similarity=0.439  Sum_probs=29.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ++.-|+|+||||+|||++++.||+.++.+++.+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            455689999999999999999999999887755

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.4e-06  Score=64.07  Aligned_cols=24  Identities=21%  Similarity=0.164  Sum_probs=22.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++|+|+|++||||||+++.|++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            489999999999999999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.00  E-value=1.7e-06  Score=64.28  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=23.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      |.|+|+||+||||||+++.++..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            57999999999999999999998854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=2.1e-06  Score=68.16  Aligned_cols=34  Identities=29%  Similarity=0.499  Sum_probs=29.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ..|.-++|+||||+|||++++.+|+.++.++++.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i   76 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEE
Confidence            4566789999999999999999999999877654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.96  E-value=2.5e-06  Score=67.40  Aligned_cols=39  Identities=26%  Similarity=0.508  Sum_probs=31.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceee--hHHHH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLA--TGDML   66 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~--~~~li   66 (245)
                      .+.|.-++|.||||+|||++++.|+..+|.+++.  ..+++
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~   79 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV   79 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhh
Confidence            3456678999999999999999999999987754  44554

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.91  E-value=5.7e-06  Score=68.89  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=35.7

Q ss_pred             HHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           19 ELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        19 ~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ++++.+....+.+..++|.||||+|||++|+.|++.+|..++++
T Consensus       142 ~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             HHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            44444444555666899999999999999999999999988865

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=3.1e-06  Score=69.08  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcce--eehHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCH--LATGDM   65 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~--i~~~~l   65 (245)
                      +|.-|+|.||||+|||.+|+.||+.++.++  +++..+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhccccccc
Confidence            556788999999999999999999997654  454443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=5.5e-06  Score=65.06  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=27.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ...+.++|+||||+||||+++.|++.++..++
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            34567899999999999999999999987655

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.7e-06  Score=61.18  Aligned_cols=24  Identities=33%  Similarity=0.571  Sum_probs=22.1

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.|+|+|+||+||||+++.++..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999999887

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=5.9e-06  Score=70.59  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .|..|+++||+|||||.+++.||+.+++|++.+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            367899999999999999999999999988755

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=8e-06  Score=65.06  Aligned_cols=35  Identities=29%  Similarity=0.532  Sum_probs=30.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeehH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATG   63 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~   63 (245)
                      +++.-|+|.||||+|||++++.+|..+|.+++..+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            45667899999999999999999999998866553

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=9.9e-06  Score=64.24  Aligned_cols=34  Identities=29%  Similarity=0.570  Sum_probs=29.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ++|.-++|+||||+|||++++.++..++.+++..
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i   69 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI   69 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHhCCeEEEE
Confidence            4455689999999999999999999999876654

>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.70  E-value=5.5e-06  Score=42.21  Aligned_cols=25  Identities=36%  Similarity=0.880  Sum_probs=21.5

Q ss_pred             CCcccCCCCccccccCCCCCCCCCC
Q 025970          157 GRWIHPASGRSYHTKFAPPKVHGFD  181 (245)
Q Consensus       157 ~r~~~~~~~~~y~~~~~~p~~~~~~  181 (245)
                      .|+.|+.||+.||+.|.||+.++++
T Consensus         1 GRR~DP~TG~iYH~~f~ppp~~ei~   25 (31)
T d1zaka2           1 GRRLDPVTGKIYHLKYSPPENEEIA   25 (31)
T ss_dssp             TEEECTTTCCEEESSSSCCCSSGGG
T ss_pred             CCcCCCCCCcEeEEecCCCCCHHHH
Confidence            3678999999999999999877665

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.68  E-value=2.4e-05  Score=61.45  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcc-CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           16 MMTELLRRFKC-SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        16 ~~~~~~~~~~~-~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+..++..... ....+..++|+||||+||||+++.|++.+
T Consensus        27 ~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          27 QLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             HHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34444433322 33456689999999999999999999887

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=2.1e-05  Score=57.30  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=28.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ...++.+|++.|.-||||||+++.+++.+|+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            34577899999999999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=1.8e-05  Score=61.82  Aligned_cols=39  Identities=26%  Similarity=0.480  Sum_probs=29.1

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+.+..+......++.++|+||||+||||+++.+++.+
T Consensus        19 ~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          19 LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            344444444444445567899999999999999999986

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.60  E-value=1.4e-05  Score=61.89  Aligned_cols=25  Identities=36%  Similarity=0.656  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +.++|+||||+||||+++.+++.++
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH
Confidence            3578999999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.57  E-value=3.1e-05  Score=63.31  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             hhhHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           13 SVDMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ......+++........+..+|.|+|+|||||||+...|...+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          33 HRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             HHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            3445566676666666788999999999999999999998765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.6e-05  Score=63.84  Aligned_cols=41  Identities=27%  Similarity=0.272  Sum_probs=32.9

Q ss_pred             hHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           15 DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ....+++........+..+|.|+|+|||||||+...|...+
T Consensus        38 ~~~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          38 ALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             HHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            34456666665566778999999999999999999998765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=4.8e-05  Score=61.94  Aligned_cols=36  Identities=17%  Similarity=0.262  Sum_probs=29.0

Q ss_pred             CCCCCc-EEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           27 SSKPDK-RLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        27 ~~~~~~-~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ++.+|. .++|.||+|+|||.+++.||+.++.+++..
T Consensus        47 ~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~   83 (315)
T d1r6bx3          47 HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF   83 (315)
T ss_dssp             CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEe
Confidence            334444 788999999999999999999998766533

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=2.9e-05  Score=59.56  Aligned_cols=29  Identities=21%  Similarity=0.450  Sum_probs=25.6

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+|.+|+|.||+|+||||.+.+||.++
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            56778899999999999999988888776

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=3.1e-05  Score=56.69  Aligned_cols=23  Identities=22%  Similarity=0.066  Sum_probs=20.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +|.|+|.+||||||++..|...+
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            67799999999999999998876

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4.6e-05  Score=56.77  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHhC
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +.|+|+||+||||+|+++.|.+.+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            3688999999999999999998763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.40  E-value=4.4e-05  Score=59.07  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++|+|+|++||||||+.++|...+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            579999999999999999998655

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=3.3e-05  Score=59.48  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      .++|+||||+||||+++.|++.++.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhc
Confidence            4679999999999999999988754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=5.9e-05  Score=58.21  Aligned_cols=23  Identities=30%  Similarity=0.719  Sum_probs=20.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++|+||||+||||+++.+++.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            47899999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.35  E-value=5.6e-05  Score=59.55  Aligned_cols=23  Identities=26%  Similarity=0.185  Sum_probs=20.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++|+||||+|||++++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999999876

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=7.2e-05  Score=57.16  Aligned_cols=29  Identities=21%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +...|.+|+|.||+||||||.+.+||..+
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45668899999999999999999998766

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.35  E-value=0.00016  Score=55.00  Aligned_cols=27  Identities=33%  Similarity=0.428  Sum_probs=23.2

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+.+|+|.||+|+||||.+.+||..+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            346688999999999999999998776

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.32  E-value=6.8e-05  Score=57.36  Aligned_cols=28  Identities=29%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.|.+|+|.||+|+||||.+.+||..+
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999998888776

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=9.2e-05  Score=56.88  Aligned_cols=24  Identities=33%  Similarity=0.678  Sum_probs=21.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .++|+||||+||||+++.|++.++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            467999999999999999998764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.23  E-value=0.00011  Score=56.01  Aligned_cols=27  Identities=22%  Similarity=0.398  Sum_probs=23.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++|.+|+|.||+||||||.+.+||..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            357799999999999999988888766

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00016  Score=56.20  Aligned_cols=31  Identities=13%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ....|..++|.||||+||||+++.+++.++.
T Consensus        30 ~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          30 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             TTCCCSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             cCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            4455667889999999999999999988743

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.17  E-value=0.00019  Score=59.47  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=28.1

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCccee
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHL   60 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i   60 (245)
                      ..++..|+++||+|+|||-+|++||+.++.+++
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            346678999999999999999999998876654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.16  E-value=0.00015  Score=53.21  Aligned_cols=34  Identities=26%  Similarity=0.509  Sum_probs=27.9

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +++.....+.+...|+|+|.+|+||||+.++|..
T Consensus         5 ~~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_           5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             HHHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3455556777889999999999999999998853

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00027  Score=53.66  Aligned_cols=39  Identities=13%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             HHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           17 MTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        17 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ++.+...+. ..+.|..++|.||+|+||||+++.+++.+.
T Consensus        11 ~~~l~~~~~-~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          11 FEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             HHHHHHHHH-TTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-cCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            444444444 555666789999999999999999998773

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.0001  Score=57.16  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=28.1

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|.||+||||||+.+.++--+
T Consensus        17 ~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3455666788899999999999999999998543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.09  E-value=3.7e-05  Score=60.22  Aligned_cols=36  Identities=28%  Similarity=0.605  Sum_probs=30.7

Q ss_pred             HHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           20 LLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        20 ~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.+.+++-+++|+|++||||||+.+.|..-+
T Consensus        17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            456666777889999999999999999999998655

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.07  E-value=8.7e-05  Score=57.48  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|.|++||||||+.+.++--+
T Consensus        22 ~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eceEEEEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            4455667788899999999999999999988544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.06  E-value=0.00018  Score=51.56  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +.|+|.|.|||||||+.++|..
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=4.7e-05  Score=59.95  Aligned_cols=35  Identities=31%  Similarity=0.655  Sum_probs=30.0

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++..-+++-+++|+|++||||||+++.|...+
T Consensus        30 L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            45566677889999999999999999999998655

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.06  E-value=4.2e-05  Score=60.28  Aligned_cols=35  Identities=34%  Similarity=0.535  Sum_probs=29.4

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++...+++-+++|+|++||||||+++.|..-+
T Consensus        31 L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             eeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            44556667888899999999999999999998655

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=8.9e-05  Score=57.91  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=29.7

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++++...+++.+++|+|++||||||+++.|...+
T Consensus        19 L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            44556667888899999999999999999998766

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.02  E-value=0.00078  Score=51.31  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=28.2

Q ss_pred             EEEECCCCCChhHHHHHHHhHh-----CcceeehHHHHHH
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEY-----CLCHLATGDMLRS   68 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~-----~~~~i~~~~li~~   68 (245)
                      ++|.|++|||||.++++++..+     .+.++++.+....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   78 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH
Confidence            6899999999999999999876     3457777666544

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.01  E-value=0.00032  Score=56.86  Aligned_cols=29  Identities=17%  Similarity=0.413  Sum_probs=24.4

Q ss_pred             CCCCCc-EEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDK-RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~-~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+|. .+++.||+|+|||.+|+.||+.+
T Consensus        48 ~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          48 DPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             CSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            344555 77888999999999999999987

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.97  E-value=0.029  Score=41.65  Aligned_cols=87  Identities=14%  Similarity=0.075  Sum_probs=48.0

Q ss_pred             CCceEEcCCCCCHHHHHHHHHHHHhcCCCccEEEEEecCHHHHHHHHhCCcccCCCCccccccCCCCCCCCCCCCCCCcc
Q 025970          109 EKGFILDGFPRTVVQAEKLDEMLEKQGTKIDKVLNFAIDDSILEERITGRWIHPASGRSYHTKFAPPKVHGFDDVTGEPL  188 (245)
Q Consensus       109 ~~~~iidg~p~~~~~~~~l~~~~~~~~~~~~~vi~L~~~~e~~~~R~~~r~~~~~~~~~y~~~~~~p~~~~~~~~~~~~l  188 (245)
                      ++.+++|.-+....+..       .....| .+||+..|.-....|+..|.                             
T Consensus        98 gk~~lldid~~g~~~lk-------~~~~~~-i~IfI~pps~e~l~~l~kr~-----------------------------  140 (199)
T d1kjwa2          98 GKHCILDVSANAVRRLQ-------AAHLHP-IAIFIRPRSLENVLEINKRI-----------------------------  140 (199)
T ss_dssp             TCEEEECCCTTHHHHHH-------HTTCCC-EEEEECCSSHHHHHHHCTTS-----------------------------
T ss_pred             CCcccccccchHHhhhh-------hhccce-eEEeeccccHHHHHhhhccc-----------------------------
Confidence            35677776554443332       122344 67888876554455544432                             


Q ss_pred             ccCCCCcHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEeCCCChhHHHHHHHHhhc
Q 025970          189 IQRKDDTAQVLKSRLEAFHKQTEPVIDYYAKKGVLAQLHAEKPPKEVTVEVQKVLS  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~  244 (245)
                            +.+.+++++....+....+..+|    .++.+  +.+.++.++.|.++|+
T Consensus       141 ------~~~~i~~r~~~~~~~e~~~~~~f----d~vI~--Nddle~a~~~l~~iI~  184 (199)
T d1kjwa2         141 ------TEEQARKAFDRATKLEQEFTECF----SAIVE--GDSFEEIYHKVKRVIE  184 (199)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHGGGC----SEEEC--CSSHHHHHHHHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHHHHHhhccC----CEEEE--CcCHHHHHHHHHHHHH
Confidence                  34567777665443333322222    23333  4578999999888774

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.95  E-value=0.00013  Score=56.76  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=27.8

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-++.|.||+||||||+.+.++-.+
T Consensus        20 ~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3445566778899999999999999999998544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.94  E-value=0.00017  Score=58.48  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             EEEECCCCCChhHHHHHHHhHhC
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      ++++||||+|||.+++.||...+
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHhc
Confidence            44589999999999999999975

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.94  E-value=0.0003  Score=54.92  Aligned_cols=30  Identities=17%  Similarity=0.129  Sum_probs=25.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCcce
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCLCH   59 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~~~   59 (245)
                      .+..++|.|++|+||||+++.+++..+..+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            345788999999999999999998886543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.92  E-value=0.0002  Score=55.71  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=28.0

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-++.|+||+||||||+.+.++-.+
T Consensus        23 ~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cceeEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3444566788899999999999999999998554

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.91  E-value=0.00011  Score=55.83  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=29.3

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++++.+-.++-+++|.||.||||||+.+.++..+
T Consensus        17 l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            45556667788899999999999999999998644

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00015  Score=56.38  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=27.7

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+-..+-++.|+|++||||||+++.++--.
T Consensus        22 ~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             eceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            3445566788899999999999999999997543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00028  Score=52.96  Aligned_cols=27  Identities=11%  Similarity=0.091  Sum_probs=24.0

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.++.|.|+||||||++|..|+...
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            577899999999999999999998654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.86  E-value=0.00014  Score=56.21  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=29.1

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++.+..++-+++|.||+||||||+.+.|+--+
T Consensus        16 L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34556667788899999999999999999998554

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00021  Score=57.08  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+.+++-+++|+|++||||||+.+.|.-.+
T Consensus        55 isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          55 INLNIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            33455788899999999999999999998655

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.80  E-value=0.00033  Score=54.37  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++|+||+||||||+.+.|+-.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            77899999999999999998654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.79  E-value=0.00034  Score=51.16  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..++..+|+|.|.+||||||+.++|..
T Consensus         9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_           9 LYKKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            446667899999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.77  E-value=0.00012  Score=56.99  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-+++|.||+||||||+.+.++--+
T Consensus        22 ~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             eceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4455666788899999999999999999998544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.76  E-value=0.00025  Score=55.82  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-++.|+|++||||||+++.|+--+
T Consensus        19 ~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4455667888899999999999999999997433

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.72  E-value=0.00042  Score=51.15  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=27.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      +.-++|.|++|+||||++-.|.++ |+.+++.|.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~   46 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRLIADDR   46 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCe
Confidence            456899999999999999999875 888887654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.70  E-value=0.00048  Score=49.83  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      -+.|+|.|.+||||||+.++|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            46899999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.70  E-value=0.00017  Score=56.77  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=29.2

Q ss_pred             HHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           21 LRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        21 ~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.++..-+++.+++|+|++||||||+.+.|.-.+
T Consensus        34 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          34 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            44555667888899999999999999999987655

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.69  E-value=0.00048  Score=50.22  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ++-+.|+|.|.|||||||+..+|..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4557899999999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.69  E-value=0.00058  Score=49.04  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...|+|+|.||+||||+.+++..
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC
Confidence            446799999999999999999875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.67  E-value=0.00042  Score=51.71  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +.|+|.|.|||||||+.+.|..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            3699999999999999999973

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.63  E-value=0.00012  Score=57.71  Aligned_cols=34  Identities=32%  Similarity=0.387  Sum_probs=28.3

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+..++-++.|+||.||||||+.+.|+-.+
T Consensus        21 ~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            4455566788899999999999999999998554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.61  E-value=0.00077  Score=52.86  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             hHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           15 DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..+.+++..+......++.|+|+|.+|+||||+++.|...
T Consensus        16 ~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            3445666666656677889999999999999999998743

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.61  E-value=0.00027  Score=55.00  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             HHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           22 RRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        22 ~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.++.+.+++-++.|+||.||||||+.+.++-.+
T Consensus        23 ~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4455666788899999999999999999998554

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00063  Score=48.47  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +|+|+|+|++||||+..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00061  Score=48.93  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ++.|+|.|.|++||||+.++|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999999974

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.53  E-value=0.00055  Score=50.56  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=27.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGD   64 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~   64 (245)
                      +.-++|.|++|+||||++-.|.++ |+.+++.|.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~   47 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK-NHLFVGDDA   47 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCe
Confidence            456789999999999999999865 888887654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00078  Score=46.22  Aligned_cols=28  Identities=14%  Similarity=0.106  Sum_probs=24.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+..|+++|.+||||||+|+.|...+
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999998766

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00047  Score=52.82  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=23.2

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      -+++.++.|.|+|||||||+|-.++..
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            357789999999999999999988643

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.00042  Score=53.82  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=27.8

Q ss_pred             HhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.+-.++-++.|.||.||||||+.+.|+-.+
T Consensus        20 ~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          20 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444566788899999999999999999998655

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00078  Score=50.47  Aligned_cols=23  Identities=22%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCChhHHHHHHHhH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.|+|+|.|+|||||+.++|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.49  E-value=0.0012  Score=49.56  Aligned_cols=39  Identities=18%  Similarity=0.151  Sum_probs=29.9

Q ss_pred             hccCCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           24 FKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        24 ~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      +....++...|+|.|||++|||+++..|.+-++-.+++.
T Consensus        46 ~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~   84 (205)
T d1tuea_          46 FLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   84 (205)
T ss_dssp             HHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             HHcCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEec
Confidence            333344456889999999999999999998886555543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.00074  Score=48.84  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=20.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999998874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.48  E-value=0.0007  Score=52.23  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=23.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.+++|.|+|||||||+|-.++...
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            567899999999999999999888654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00094  Score=51.41  Aligned_cols=27  Identities=15%  Similarity=-0.015  Sum_probs=23.8

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      -+++.+++|.|+||||||++|..++..
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            467889999999999999999999853

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0011  Score=49.59  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++|+|+||+|||++++.||.+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            56899999999999999999765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.43  E-value=0.00081  Score=49.26  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=27.9

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcceeehHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLCHLATGDM   65 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~~~l   65 (245)
                      +.-++|.|++|+||||++-.|.++ |+.+++-|.+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~   48 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR-GHRLVADDNV   48 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeE
Confidence            456799999999999999888876 8888876543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.40  E-value=0.00083  Score=51.61  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=24.8

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+++.+++|.|+||||||++|..++...
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4567799999999999999999998875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.00097  Score=48.49  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|+|.+||||||+.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999974

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.36  E-value=0.0011  Score=47.90  Aligned_cols=22  Identities=41%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|++|+||||+.++|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4789999999999999999865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.35  E-value=0.0006  Score=55.44  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      -++|.|+||+||||+++.|+..+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            57899999999999999999876

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0005  Score=53.14  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             HhccCCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           23 RFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        23 ~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .++.+-.++-++.|.|+.||||||+.+.|+-.
T Consensus        17 ~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             SEEEEEETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34556678889999999999999999999853

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.00096  Score=49.15  Aligned_cols=26  Identities=15%  Similarity=0.147  Sum_probs=22.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++...|+|+|.+|+||||+.++|...
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0013  Score=47.97  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            3689999999999999999864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0012  Score=48.15  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...|+|+|.+|+||||+.++|..
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHh
Confidence            456899999999999999999875

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.25  E-value=0.016  Score=43.24  Aligned_cols=26  Identities=12%  Similarity=-0.036  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .++.++|.|++|+||||+|..|++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999999754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.24  E-value=0.0028  Score=50.03  Aligned_cols=27  Identities=26%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .....+|+|.|+.|.||||+|+.+.+.
T Consensus        41 ~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          41 DLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             TSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            344568999999999999999998765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0013  Score=49.31  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .|+|.|+|||||||+.++|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.23  E-value=0.0014  Score=47.56  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            3689999999999999999874

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0014  Score=48.35  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||++++|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4689999999999999999874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0015  Score=47.55  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.+++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4689999999999999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.16  E-value=0.0019  Score=47.39  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=22.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..++.|+|+|.+|+||||+.++|...
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34688999999999999999999753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0018  Score=50.98  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..++|+|+||+|||++++.|+.+.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            366899999999999999999764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0014  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=20.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999885

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.15  E-value=0.0012  Score=48.36  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|+|.|++||||+.++|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999974

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0017  Score=47.44  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.001  Score=48.77  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=21.7

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .+...|+|.|.+|+||||+.++|..
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHh
Confidence            4556899999999999999999874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0015  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0013  Score=47.58  Aligned_cols=24  Identities=13%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +...|+|.|.+|+||||+.++|..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            345799999999999999999874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0016  Score=47.05  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|++.|.+|+||||+.++|..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999999875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0018  Score=46.71  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0018  Score=46.83  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|.|.+|+||||+.++|..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            35789999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.06  E-value=0.0013  Score=53.39  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +..|+|+|++||||||+.+.|....+
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            34689999999999999999987663

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.06  E-value=0.0018  Score=47.33  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             EEEEECCCCCChhHHHHHHHhH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +|+|+|.+|+||||+.++|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.04  E-value=0.0017  Score=49.51  Aligned_cols=28  Identities=18%  Similarity=0.032  Sum_probs=24.4

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+++.+++|.|+||+|||+++..++...
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999998654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.00094  Score=48.81  Aligned_cols=24  Identities=13%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..+.|+|.|.|++||||+.++|..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            467899999999999999998854

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.002  Score=46.36  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|+|.+|+||||+.+++..
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.01  E-value=0.0022  Score=46.96  Aligned_cols=26  Identities=27%  Similarity=0.463  Sum_probs=23.2

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      ...+...|+|.|.+||||||+.++|.
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHh
Confidence            56678899999999999999999875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.00  E-value=0.0016  Score=49.36  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=21.9

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      -+++.++.|.|+||+|||++|..++.
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            36788999999999999999976543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.00  E-value=0.0013  Score=47.82  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.5

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .++.+.|+|+|.+||||||+.++|..
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhc
Confidence            35567899999999999999999864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.0022  Score=47.16  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.++|..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999999874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0017  Score=46.89  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|.|.+|+||||+.++|..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            45789999999999999999874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0023  Score=46.20  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.+++..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0024  Score=46.47  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|.|.+|+||||+.++|..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998874

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.91  E-value=0.0023  Score=48.99  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      |+++|+|.|.+.+||||+..+|...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            5568999999999999999998754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0018  Score=49.53  Aligned_cols=24  Identities=33%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+|+|..||||||+.+.|.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            578999999999999999987653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0023  Score=46.34  Aligned_cols=21  Identities=24%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|+|.+|+||||+.++|..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0022  Score=46.63  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +|+|.|.|++||||+.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999974

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0026  Score=46.06  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|+|.+|+|||++.+++..
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0026  Score=46.10  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.+++..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0027  Score=46.00  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|+|.+|+||||+.++|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999999874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0024  Score=46.07  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|+|.+|+||||+.++|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0025  Score=46.12  Aligned_cols=21  Identities=29%  Similarity=0.726  Sum_probs=18.9

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|.|.+|+||||+.++|..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            589999999999999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0027  Score=45.82  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|+|.+|+|||++.+++..
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35789999999999999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.82  E-value=0.0027  Score=48.57  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++...+|.|++|+||||+.+.|...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            3567899999999999999998643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0025  Score=45.75  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|.|.+|+||||+.++|..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999874

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.81  E-value=0.0017  Score=47.67  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=18.8

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      -|.|+|+|++||||+.++|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999853

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0034  Score=49.46  Aligned_cols=35  Identities=20%  Similarity=0.114  Sum_probs=27.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh---Cc--ceeehH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATG   63 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~   63 (245)
                      ..|.+|++.|.=|+||||++..||..+   |.  -++++|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            446689999999999999888888777   43  456665

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0026  Score=46.02  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...|+|.|.+|+||||+.+++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            357899999999999999988743

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.80  E-value=0.00081  Score=48.17  Aligned_cols=23  Identities=35%  Similarity=0.585  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCChhHHHHHHHhH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.|+|+|.|++||||+.++|...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0026  Score=47.27  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+||||||+.++|..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            3689999999999999999874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0032  Score=45.56  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.+++..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0029  Score=46.09  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCChhHHHHHHHhH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..|+|.|.+|+||||+..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999998753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0034  Score=46.36  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             CcEEEEECCCCCChhHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVI   51 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~L   51 (245)
                      -..|+|.|.+||||||+.+++
T Consensus         2 ~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHH
Confidence            457899999999999999998

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0034  Score=45.58  Aligned_cols=21  Identities=43%  Similarity=0.707  Sum_probs=19.2

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|.|.+|+||||+++++..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.63  E-value=0.0037  Score=45.20  Aligned_cols=22  Identities=18%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+||||+.+++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.61  E-value=0.0043  Score=48.51  Aligned_cols=26  Identities=15%  Similarity=0.162  Sum_probs=22.4

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .++.+++|.|+||+||||++..++-.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            56779999999999999998888754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.0022  Score=46.87  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      -|+|+|.|++||||+.++|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.004  Score=45.76  Aligned_cols=23  Identities=17%  Similarity=0.153  Sum_probs=20.5

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|.|.+|+||||+.++|..
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHhh
Confidence            45799999999999999999875

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.43  E-value=0.0057  Score=47.39  Aligned_cols=41  Identities=24%  Similarity=0.342  Sum_probs=26.4

Q ss_pred             hHHHHHHHHhccCCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           15 DMMTELLRRFKCSSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+..+.+.+......+.-|+|.|++|+||+++|+.|...-
T Consensus         7 ~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2           7 PKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             HHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            34444454444422222235788999999999999997543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0042  Score=45.46  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|+|.+|+|||++.+++..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999998875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.0026  Score=46.23  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=9.3

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|.|.+|+||||+.++|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998863

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.39  E-value=0.005  Score=51.29  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .|+|+||+||||||....+....+
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhc
Confidence            778999999999999888887763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.0051  Score=44.47  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|++.|.+|+||||+.+++..
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            45789999999999999998874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.005  Score=45.44  Aligned_cols=22  Identities=18%  Similarity=0.176  Sum_probs=19.9

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+|+|||++..++..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0031  Score=45.74  Aligned_cols=21  Identities=38%  Similarity=0.482  Sum_probs=18.2

Q ss_pred             EEEEECCCCCChhHHHHHHHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .|+|.|.+|+||||+.++|..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999988754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.22  E-value=0.014  Score=45.72  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=27.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ..++...++|.||+++|||+++..|...+|..
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            44556688999999999999999999988754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.0062  Score=49.89  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=17.1

Q ss_pred             CcEEEEECCCCCChhHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVI   51 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~L   51 (245)
                      ..+.+|.|+||+||||+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            448899999999999877543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0066  Score=44.29  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      |-..|++.|.+|+||||+.+++..
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999998864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.05  E-value=0.006  Score=44.58  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ...|+|+|.|.+||||+.++|..
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHH
Confidence            34799999999999999999974

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0082  Score=46.68  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +.+.+|.|+||+||||++-.|+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            457789999999999999888765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.84  E-value=0.0076  Score=45.21  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      |...|++.|-+++||||++.+|....
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHh
Confidence            45789999999999999999986443

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.015  Score=45.29  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHh---C--cceeehH
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEY---C--LCHLATG   63 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~---~--~~~i~~~   63 (245)
                      .....+|++.|.=|+||||++-.||..+   |  +..+++|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4556688999999999999877777666   4  4455665

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.82  E-value=0.0063  Score=50.35  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.1

Q ss_pred             EEEECCCCCChhHHHHHHHhHh
Q 025970           34 LVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++|+|+||+|||+++..||.+.
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            3788999999999999998764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.82  E-value=0.0084  Score=45.42  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=19.6

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ..|+|.|.+||||||+.+++..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999853

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.0099  Score=44.28  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             cEEEEECCC-CCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPP-GSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~-GsGKSt~~~~La~~~   55 (245)
                      ++++|+|.- |+||||++-.|+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            578999995 999999988888777

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.76  E-value=0.0028  Score=48.66  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=21.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ++...+|.|++|+||||+.+.|...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            5667899999999999999999743

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.73  E-value=0.0076  Score=47.44  Aligned_cols=15  Identities=27%  Similarity=0.403  Sum_probs=12.5

Q ss_pred             EEEECCCCCChhHHH
Q 025970           34 LVLIGPPGSGKGTQS   48 (245)
Q Consensus        34 i~i~G~~GsGKSt~~   48 (245)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            467899999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.0078  Score=50.03  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      ..|..|+|+|.||+||||+.+.|.
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh
Confidence            356789999999999999999996

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.0098  Score=46.50  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +++.+..|.|+|||||||+|-.++...
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            467799999999999999998887665

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.68  E-value=0.0058  Score=48.65  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=12.5

Q ss_pred             EEEECCCCCChhHHH
Q 025970           34 LVLIGPPGSGKGTQS   48 (245)
Q Consensus        34 i~i~G~~GsGKSt~~   48 (245)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            567899999999764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.61  E-value=0.0094  Score=43.69  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..|+|.|..|+||||+.+++....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999997553

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.46  E-value=0.013  Score=40.42  Aligned_cols=28  Identities=29%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      -...+|.+|.|||||+++-.+....|..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            3467899999999999987666666543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.29  E-value=0.014  Score=42.54  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCChhHHHHHHHhH
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ..|+|.|..|+||||+.++|...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            57899999999999999998643

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.81  E-value=0.017  Score=45.51  Aligned_cols=26  Identities=35%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHhC
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +.+-+|+|+.||||||+.++|.=.+|
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            33668999999999999999864443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.0032  Score=46.21  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+|+|+.||||||+..+|.-.+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            55799999999999999998554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.59  E-value=0.033  Score=43.49  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=24.2

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ...++..+.|+|.|.+||||+.+.|..+
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhcc
Confidence            3456788999999999999999999854

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.23  E-value=0.027  Score=44.52  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +..+|.|.|+|.|.|||||+-++|..
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHC
Confidence            34578999999999999999999974

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.17  E-value=0.022  Score=41.69  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      +|+|+|+.+||||..|..|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            478999999999999999986654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.03  E-value=0.037  Score=43.16  Aligned_cols=29  Identities=21%  Similarity=0.224  Sum_probs=23.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ..+.+.+..|.|++||||||+|-.++...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            34667899999999999999998777544

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.99  E-value=0.015  Score=39.70  Aligned_cols=19  Identities=32%  Similarity=0.289  Sum_probs=16.0

Q ss_pred             CCcEEEEECCCCCChhHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQS   48 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~   48 (245)
                      ++...+|.+++|||||.++
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            4667889999999999765

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.93  E-value=0.029  Score=43.77  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +.+.+.-|.|++||||||+|-.++...
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHH
Confidence            567799999999999999998877654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.038  Score=42.17  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             CcEEEEECCCCCChhHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      ...++|+||..+||||+.+.++
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            3578999999999999999865

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.73  E-value=0.041  Score=41.24  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=18.0

Q ss_pred             EEEE-ECCCCCChhHHHHHHHhHh
Q 025970           33 RLVL-IGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i-~G~~GsGKSt~~~~La~~~   55 (245)
                      +|.| .|.-|+||||++..||..+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            3444 4889999999998877666

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.051  Score=37.60  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ++.+-+|+||+.|||||-.-+.+..+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            35567899999999999766655555

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.032  Score=46.19  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=17.7

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .-++|+|++|||||+..+.+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3489999999999998765543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.53  E-value=0.038  Score=40.95  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=20.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      |...|+++|-..+||||++.+|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHH
Confidence            336799999999999999998864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=0.039  Score=45.13  Aligned_cols=25  Identities=32%  Similarity=0.402  Sum_probs=20.3

Q ss_pred             CcEEEEECCCCCChhHHHHHHHhHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +-+-+|+|+.|||||++..++.=.+
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3466899999999999999986333

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.40  E-value=0.039  Score=42.61  Aligned_cols=31  Identities=16%  Similarity=0.260  Sum_probs=24.4

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh---Cc--ceeehH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATG   63 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~   63 (245)
                      .|+|.|.=|+||||++-.|+..+   |.  .+|++|
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            68899999999999988877666   43  466665

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.35  E-value=0.044  Score=42.80  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ++.|.|+|.|.+||||+-++|..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHC
Confidence            46899999999999999999884

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.043  Score=43.21  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=25.1

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++..+.|+|++|+|||+++..++...
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            45688899999999999999999988743

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.16  E-value=0.054  Score=42.70  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=24.6

Q ss_pred             CCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           28 SKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        28 ~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      .-..|.|+|+|...|||||+.+.|.   |.+++-+
T Consensus        21 ~~~lP~ivVvG~~ssGKSSliNaLl---G~~~lP~   52 (306)
T d1jwyb_          21 PLDLPQIVVVGSQSSGKSSVLENIV---GRDFLPR   52 (306)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHH---TSCCCCC
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHh---CCCCCCC
Confidence            3345578999999999999999997   5555433

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.06  E-value=0.059  Score=39.92  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=21.5

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHh
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      +|...|+|+|...+||||++.+|..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            4446799999999999999999964

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.95  E-value=0.049  Score=41.25  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=18.1

Q ss_pred             EEEEECCCCCChhHHHHHHH
Q 025970           33 RLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La   52 (245)
                      +++|+||..+||||+.+.++
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            78999999999999998765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.43  E-value=0.051  Score=43.14  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCChhHHHHHHHh
Q 025970           32 KRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      |.|.|.|.|.+||||+-++|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            5689999999999999999954

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.01  E-value=0.068  Score=39.16  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=20.0

Q ss_pred             CcEEEEECCCCCChhHHHHHHHh
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      -..|+|+|-..+||||+..+|..
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEEEeccCCcHHHHHHHHHh
Confidence            34689999999999999999963

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.083  Score=41.28  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      +-.+|.|+|+.++||||+...|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCC
Confidence            3448899999999999999998753

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.90  E-value=0.11  Score=36.20  Aligned_cols=26  Identities=23%  Similarity=0.111  Sum_probs=21.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      .+.+=+|+||+.|||||-.-+...++
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceeEEEEEeccccHHHHHHHHHHHHh
Confidence            56677899999999999776666665

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.86  E-value=0.082  Score=41.08  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhC
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYC   56 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~   56 (245)
                      .|+|.|..|+||||++.+|.-.-|
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Confidence            689999999999999999864444

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.69  E-value=0.093  Score=39.16  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             cEEEEE-CCCCCChhHHHHHHHhHh
Q 025970           32 KRLVLI-GPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        32 ~~i~i~-G~~GsGKSt~~~~La~~~   55 (245)
                      .+|+|. +.-|+||||++-.|+..+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHH
Confidence            467777 677999999998888766

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.69  E-value=0.086  Score=41.15  Aligned_cols=25  Identities=16%  Similarity=0.007  Sum_probs=21.6

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      .|+|.|..||||||++.+|...-|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            6899999999999999999765554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.26  E-value=0.11  Score=39.03  Aligned_cols=28  Identities=18%  Similarity=0.152  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      .-..|++.|-..+||||++.+|....|.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3456899999999999999999766554

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.93  E-value=0.1  Score=46.29  Aligned_cols=29  Identities=17%  Similarity=0.384  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++..|+|.|-+|||||+-++.+-+.+
T Consensus        87 ~~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          87 QDREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44678899999999999999999887655

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.82  E-value=0.14  Score=35.51  Aligned_cols=23  Identities=17%  Similarity=0.080  Sum_probs=16.6

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      +=+++||+.|||||-.-+...++
T Consensus         4 L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEccccCHHHHHHHHHHHHH
Confidence            45789999999999544444444

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.67  E-value=0.11  Score=40.45  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=23.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhHh---Cc--ceeehH
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEY---CL--CHLATG   63 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~---~~--~~i~~~   63 (245)
                      +|+|.|.=|+||||++-.|+..+   |.  -+|++|
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            57889999999999777766555   44  456665

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=89.50  E-value=0.12  Score=45.67  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++..|+|.|-+|||||+-++.+-+.+
T Consensus        82 ~~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          82 QSQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            44677899999999999999999887655

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.46  E-value=0.17  Score=39.41  Aligned_cols=22  Identities=14%  Similarity=0.240  Sum_probs=19.6

Q ss_pred             CcEEEEECCCCCChhHHHHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      .+.|+|+|.-.|||||+.++|.
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLl   47 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Confidence            4468899999999999999997

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.26  E-value=0.12  Score=38.72  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      +...|++.|--++||||++.+|.-..|.
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            3467999999999999999988755554

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.22  E-value=0.13  Score=45.68  Aligned_cols=29  Identities=17%  Similarity=0.425  Sum_probs=24.4

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++..|+|.|-+|||||.-++.+-+.+
T Consensus       121 ~~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         121 DDRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            44678899999999999999999886544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.17  E-value=0.13  Score=37.36  Aligned_cols=20  Identities=25%  Similarity=0.436  Sum_probs=15.8

Q ss_pred             EEEECCCCCChhHHHHHHHh
Q 025970           34 LVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        34 i~i~G~~GsGKSt~~~~La~   53 (245)
                      .++.+|.|||||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            46779999999987766654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.84  E-value=0.12  Score=39.30  Aligned_cols=28  Identities=25%  Similarity=0.226  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      +...|+++|-..+||||++.+|.-..|.
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            3468999999999999999999865554

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.82  E-value=0.13  Score=46.29  Aligned_cols=41  Identities=10%  Similarity=0.359  Sum_probs=29.6

Q ss_pred             hHHHHHHHHhcc--CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           15 DMMTELLRRFKC--SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        15 ~~~~~~~~~~~~--~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      |.+.-+.+.|..  ...++..|+|.|-+|||||.-++.+-+.+
T Consensus       105 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         105 HIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            555444444442  44678899999999999999998776554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.12  Score=40.89  Aligned_cols=20  Identities=35%  Similarity=0.466  Sum_probs=16.9

Q ss_pred             CCcEEEEECCCCCChhHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSP   49 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~   49 (245)
                      ..-+.+++|.+|+||||++.
T Consensus        13 ~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            34577899999999999884

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=88.70  E-value=0.14  Score=45.49  Aligned_cols=29  Identities=14%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      ...++..|+|.|-+|||||..++.+-+.+
T Consensus        90 ~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          90 RDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34578899999999999999998876544

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.64  E-value=0.15  Score=39.62  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=22.8

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      .++.++.|+|++|+|||+++..++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            56778999999999999999888754

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.08  E-value=0.14  Score=40.67  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=16.8

Q ss_pred             CCcEEEEECCCCCChhHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSP   49 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~   49 (245)
                      .+-+-+++|.+|+||||++.
T Consensus        13 ~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            34567899999999999994

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.98  E-value=0.24  Score=36.48  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=21.2

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCcc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCLC   58 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~~   58 (245)
                      ..+|.+++|+|||.++-.++..++..
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCc
Confidence            45678899999999998888888643

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.75  E-value=0.15  Score=45.68  Aligned_cols=41  Identities=10%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             hHHHHHHHHhcc--CCCCCcEEEEECCCCCChhHHHHHHHhHh
Q 025970           15 DMMTELLRRFKC--SSKPDKRLVLIGPPGSGKGTQSPVIKDEY   55 (245)
Q Consensus        15 ~~~~~~~~~~~~--~~~~~~~i~i~G~~GsGKSt~~~~La~~~   55 (245)
                      |.+.-+.+.|..  ...++..|+|.|-+|||||.-++.+-+.+
T Consensus       103 HiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         103 HLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             CHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            444444443332  44578899999999999999988877654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.49  E-value=0.1  Score=41.42  Aligned_cols=19  Identities=37%  Similarity=0.501  Sum_probs=16.5

Q ss_pred             CcEEEEECCCCCChhHHHH
Q 025970           31 DKRLVLIGPPGSGKGTQSP   49 (245)
Q Consensus        31 ~~~i~i~G~~GsGKSt~~~   49 (245)
                      .-+.+++|.+|+||||++.
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            4577999999999999875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.85  E-value=0.48  Score=30.34  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhHhCcceeeh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDEYCLCHLAT   62 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~~~~~~i~~   62 (245)
                      ...+.+.|.|+|.-|+|-|.+|+.|.+. |+.+-=.
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGS   38 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNE-GYQISGS   38 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEE
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEE
Confidence            3456778999999999999999998764 7765533

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.92  E-value=0.1  Score=38.28  Aligned_cols=18  Identities=33%  Similarity=0.458  Sum_probs=15.0

Q ss_pred             cEEEEECCCCCChhHHHH
Q 025970           32 KRLVLIGPPGSGKGTQSP   49 (245)
Q Consensus        32 ~~i~i~G~~GsGKSt~~~   49 (245)
                      ..+++.+|+|||||+++.
T Consensus        41 ~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             SCEEEECSSHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHH
Confidence            357899999999998764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.68  E-value=0.18  Score=38.42  Aligned_cols=29  Identities=28%  Similarity=0.232  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCChhHHHHHHHhHhCc
Q 025970           29 KPDKRLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      ++...|+|+|-..+||||++.+|.-..|.
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            34556999999999999999999765554

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.27  E-value=0.37  Score=36.40  Aligned_cols=28  Identities=14%  Similarity=-0.011  Sum_probs=22.8

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHhH
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKDE   54 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~~   54 (245)
                      ....|+..+|.|..|||||-++-..+..
T Consensus        72 ~~~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          72 CQPLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             HSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             hccCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            4567788899999999999998766543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.69  E-value=0.22  Score=39.94  Aligned_cols=25  Identities=16%  Similarity=0.233  Sum_probs=22.0

Q ss_pred             EEEEECCCCCChhHHHHHHHhHhCc
Q 025970           33 RLVLIGPPGSGKGTQSPVIKDEYCL   57 (245)
Q Consensus        33 ~i~i~G~~GsGKSt~~~~La~~~~~   57 (245)
                      .|+|.|..++||||++.+|-...|.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~g~   43 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRAGI   43 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHHBC
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCC
Confidence            5999999999999999999866654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=83.20  E-value=0.33  Score=37.44  Aligned_cols=18  Identities=22%  Similarity=0.418  Sum_probs=15.0

Q ss_pred             CCCcEEEEECCCCCChhH
Q 025970           29 KPDKRLVLIGPPGSGKGT   46 (245)
Q Consensus        29 ~~~~~i~i~G~~GsGKSt   46 (245)
                      .++..+++.+++|||||+
T Consensus         7 ~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             hcCCcEEEEECCCCCHHH
Confidence            345678899999999996

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.05  E-value=0.24  Score=37.15  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=17.8

Q ss_pred             CCcEEEEECCCCCChhHHHHHHH
Q 025970           30 PDKRLVLIGPPGSGKGTQSPVIK   52 (245)
Q Consensus        30 ~~~~i~i~G~~GsGKSt~~~~La   52 (245)
                      .+.-+++.+|+|+|||+++-..+
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHH
Confidence            44567899999999998765544

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.70  E-value=0.3  Score=37.63  Aligned_cols=27  Identities=26%  Similarity=0.209  Sum_probs=21.5

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      ....||.-+|.|..|||||-++-..+.
T Consensus       100 ~~~~~m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3         100 ISEKPMNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             HSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             hccCcceeeeeccccccccHHHHHHHH
Confidence            345677789999999999998876553

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.32  E-value=0.35  Score=37.67  Aligned_cols=27  Identities=19%  Similarity=0.145  Sum_probs=22.2

Q ss_pred             CCCCCcEEEEECCCCCChhHHHHHHHh
Q 025970           27 SSKPDKRLVLIGPPGSGKGTQSPVIKD   53 (245)
Q Consensus        27 ~~~~~~~i~i~G~~GsGKSt~~~~La~   53 (245)
                      .-.++.++.|+|++|+|||+++..++.
T Consensus        64 pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          64 PIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCCEEEeecCCCCChHHHHHHHHH
Confidence            335677899999999999999877663