Citrus Sinensis ID: 025980

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----

MVSQTIDILKNELPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQTKA

cHHHHHHHHHHcccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHccccEEEEEEEcccccccccHHcHHHHHHccccccccEEEEEccccccccccccHHHHcccccccHHHHHHHHHHHHHHHcccEEEccccccccccc

ccHHHHHHHHHHcccccccEEccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccHHHHHHHHHcccccccEEEEccccccccccccccccHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHccccccccEEEEEcHccccccccHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccc

MVSQTIDILknelplelesvvlpddvvTGLVLVDIINGFctvgagnlaprepnrqisgMINESARLARAFCdrrlpvmafldthhpnkpedpypthciagthesnlvpalqwiekepnvtirrkdcfdgyfgsieddgsnvFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTmsarnrgflrplEEVVVYSAAcatfdipthvathtkgalahpqefmHHVGLYMAKERGakianqlsfseqtka

mvsqtidilknelplelesvVLPDDVVTGLVLVDIINGFCTvgagnlaprepnrqISGMINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQTKA

MVSQTIDILKNelplelesvvlpDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQTKA

*****IDILKNELPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLA*********GMINESARLARAFCDRRLPVMAFLDTHH*******YPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKE*****************

**SQTIDILKNEL**********DDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSE****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		245	2.2.26 [Sep-21-2011]
O32091		183	Uncharacterized isochoris	yes	no	0.628	0.841	0.298	8e-09
P21369		213	Pyrazinamidase/nicotinami	N/A	no	0.506	0.582	0.262	0.0005

>sp\|O32091\|PNCA_BACSU Uncharacterized isochorismatase family protein PncA OS=Bacillus subtilis (strain 168) GN=pncA PE=3 SV=1	Back alignment and function desciption

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 78/181 (43%), Gaps = 27/181 (14%)

Query: 30  LVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKP 89
           L+ +D  N F     G L   EP R I   I     L + F      V+  +D+H     
Sbjct: 5   LICIDYTNDF-VASDGKLTCGEPGRMIEEAI---VNLTKEFITNGDYVVLAVDSHDEGDQ 60

Query: 90  EDP----YPTHCIAGTHESNL----VPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNV 141
             P    +P H I GT   +L    +P  Q  E EPNV    K  +  + G+  +     
Sbjct: 61  YHPETRLFPPHNIKGTEGKDLYGKLLPLYQKHEHEPNVYYMEKTRYSAFAGTDLELK--- 117

Query: 142 FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPT 201
               ++  QI +L + GVCTDICVL    + + A N+GF      +VV+  A A+F+   
Sbjct: 118 ----LRERQIGELHLAGVCTDICVLH---TAVDAYNKGF-----RIVVHKQAVASFNQEG 165

Query: 202 H 202
           H
Sbjct: 166 H 166

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

>sp\|P21369\|PNCA_ECOLI Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12) GN=pncA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		245
224093276		245	predicted protein [Populus trichocarpa]	0.995	0.995	0.799	1e-116
357476213		269	Isochorismatase family protein pncA, put	0.995	0.907	0.778	1e-114
388517859		245	unknown [Lotus japonicus]	0.995	0.995	0.786	1e-113
388491036		245	unknown [Medicago truncatula]	0.995	0.995	0.774	1e-113
388508362		245	unknown [Lotus japonicus]	0.995	0.995	0.782	1e-112
449438220		243	PREDICTED: uncharacterized isochorismata	0.975	0.983	0.748	1e-106
449516661		243	PREDICTED: uncharacterized isochorismata	0.975	0.983	0.748	1e-106
225464087		248	PREDICTED: uncharacterized isochorismata	1.0	0.987	0.734	1e-105
363808168		220	uncharacterized protein LOC100814228 [Gl	0.885	0.986	0.788	1e-100
225468460		245	PREDICTED: uncharacterized isochorismata	1.0	1.0	0.685	7e-95

>gi\|224093276\|ref\|XP_002309862.1\| predicted protein [Populus trichocarpa] gi\|222852765\|gb\|EEE90312.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/244 (79%), Positives = 220/244 (90%)

Query: 1   MVSQTIDILKNELPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMI 60
           MVSQT+D+LKNELPLE ESVVLP+DVV GLVLVDIINGFC+VGAGNLAPREPN QI+GMI
Sbjct: 1   MVSQTVDLLKNELPLEQESVVLPEDVVNGLVLVDIINGFCSVGAGNLAPREPNMQITGMI 60

Query: 61  NESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVT 120
           NESARLAR FCD++LPV+AFLD+H PNKPE+PYP HCIAGT ES LVPALQWIE EPNVT
Sbjct: 61  NESARLARLFCDKKLPVLAFLDSHQPNKPEEPYPPHCIAGTDESKLVPALQWIENEPNVT 120

Query: 121 IRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGF 180
           IRRKDCFDG+ GSIEDDGSNVFVDWVKN+ I+ ++VVG+CTDICVLDFVCST+SARNRGF
Sbjct: 121 IRRKDCFDGFLGSIEDDGSNVFVDWVKNNHIKAILVVGICTDICVLDFVCSTISARNRGF 180

Query: 181 LRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFS 240
           L PLE+V+VYS  CATFD+P HVA +TKGAL+HPQE MHH+GLYMAKERGA IAN++S  
Sbjct: 181 LAPLEDVIVYSRGCATFDVPLHVARNTKGALSHPQELMHHMGLYMAKERGAIIANEVSLL 240

Query: 241 EQTK 244
              K
Sbjct: 241 TPKK 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357476213\|ref\|XP_003608392.1\| Isochorismatase family protein pncA, putative [Medicago truncatula] gi\|217073560\|gb\|ACJ85140.1\| unknown [Medicago truncatula] gi\|355509447\|gb\|AES90589.1\| Isochorismatase family protein pncA, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388517859\|gb\|AFK46991.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|388491036\|gb\|AFK33584.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388508362\|gb\|AFK42247.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|449438220\|ref\|XP_004136887.1\| PREDICTED: uncharacterized isochorismatase family protein PncA-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449516661\|ref\|XP_004165365.1\| PREDICTED: uncharacterized isochorismatase family protein PncA-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225464087\|ref\|XP_002270896.1\| PREDICTED: uncharacterized isochorismatase family protein pncA [Vitis vinifera] gi\|147771197\|emb\|CAN72022.1\| hypothetical protein VITISV_006364 [Vitis vinifera] gi\|296088776\|emb\|CBI38226.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|363808168\|ref\|NP_001242482.1\| uncharacterized protein LOC100814228 [Glycine max] gi\|255640507\|gb\|ACU20539.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|225468460\|ref\|XP_002266720.1\| PREDICTED: uncharacterized isochorismatase family protein pncA [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		245
TAIR\|locus:2041298		244	NIC1 "nicotinamidase 1" [Arabi	0.877	0.881	0.651	2e-79
UNIPROTKB\|Q50575		186	pncA "Pyrazinamidase/nicotinam	0.534	0.704	0.241	5.9e-05

TAIR\|locus:2041298 NIC1 "nicotinamidase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 140/215 (65%), Positives = 173/215 (80%)

Query:    25 DVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTH 84
             D   GLV+VD++NGFCT+G+GN+AP + N QIS M+ ESA+LAR FCDR+ PV+AF+D+H
Sbjct:    28 DSSVGLVIVDVVNGFCTIGSGNMAPTKHNEQISKMVEESAKLAREFCDRKWPVLAFIDSH 87

Query:    85 HPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVD 144
             HP+ PE PYP HCI GT ES LVPAL+W+E E   T+RRKDC +G+ GS+E DGSNVFVD
Sbjct:    88 HPDIPERPYPPHCIIGTEESELVPALKWLESEDCATLRRKDCINGFVGSMESDGSNVFVD 147

Query:   145 WVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVA 204
             WVK  QI+ +VVVG+CTDICV DFV + +SARN G L P+E+VVVYS  CATFD+P HVA
Sbjct:   148 WVKEKQIKVIVVVGICTDICVFDFVATALSARNHGVLSPVEDVVVYSRGCATFDLPLHVA 207

Query:   205 THTKGALAHPQEFMHHVGLYMAKERGAKIANQLSF 239
                KGA AHPQE MHHVGLYMAK RGA++ +++SF
Sbjct:   208 KDIKGAQAHPQELMHHVGLYMAKGRGAQVVSKISF 242

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0008936 "nicotinamidase activity" evidence=IMP;IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0019365 "pyridine nucleotide salvage" evidence=IMP

UNIPROTKB\|Q50575 pncA "Pyrazinamidase/nicotinamidase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		245
PLN02743		239	PLN02743, PLN02743, nicotinamidase	1e-164
cd00431		161	cd00431, cysteine_hydrolases, Cysteine hydrolases;	2e-31
pfam00857		173	pfam00857, Isochorismatase, Isochorismatase family	2e-25
COG1335		205	COG1335, PncA, Amidases related to nicotinamidase	2e-19
cd01011		196	cd01011, nicotinamidase, Nicotinamidase/pyrazinami	1e-13
PRK11609		212	PRK11609, PRK11609, nicotinamidase/pyrazinamidase;	4e-09
cd01014		155	cd01014, nicotinamidase_related, Nicotinamidase_ r	6e-07
PTZ00331		212	PTZ00331, PTZ00331, alpha/beta hydrolase; Provisio	3e-06

>gnl\|CDD\|215396 PLN02743, PLN02743, nicotinamidase	Back alignment and domain information

 Score =  452 bits (1164), Expect = e-164
 Identities = 170/239 (71%), Positives = 204/239 (85%)

Query: 1   MVSQTIDILKNELPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMI 60
           MVS T+D+LK ELP+E ES+VL  DV TGLVLVD +NGFCTVGAGNLAPREP++QIS M+
Sbjct: 1   MVSDTVDLLKKELPVEQESLVLNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMV 60

Query: 61  NESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVT 120
           +ESARLAR FC+R+ PV+AFLD+HHP+KPE PYP HCI GT E NLVPALQW+E +PNVT
Sbjct: 61  DESARLAREFCERKWPVLAFLDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVT 120

Query: 121 IRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGF 180
           +RRKDC DG+ G+IE DGSNVFVDWV N++I+ ++VVG+CTDICVLDFV S +SARN G 
Sbjct: 121 LRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGICTDICVLDFVASALSARNHGI 180

Query: 181 LRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSF 239
           L PLE+VVVYS  CAT+D+P HVA   KGALAHPQE MHH+GLYMAK RGAK+ +++SF
Sbjct: 181 LPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSKVSF 239

Length = 239

>gnl\|CDD\|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	Back alignment and domain information

>gnl\|CDD\|216156 pfam00857, Isochorismatase, Isochorismatase family	Back alignment and domain information

>gnl\|CDD\|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	Back alignment and domain information

>gnl\|CDD\|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional	Back alignment and domain information

>gnl\|CDD\|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	Back alignment and domain information

>gnl\|CDD\|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		245
PLN02743		239	nicotinamidase	100.0
PRK11609		212	nicotinamidase/pyrazinamidase; Provisional	100.0
TIGR03614		226	RutB pyrimidine utilization protein B. RL Proc Nat	100.0
PTZ00331		212	alpha/beta hydrolase; Provisional	100.0
cd01011		196	nicotinamidase Nicotinamidase/pyrazinamidase (PZas	100.0
PRK11440		188	putative hydrolase; Provisional	100.0
cd01013		203	isochorismatase Isochorismatase, also known as 2,3	100.0
cd01015		179	CSHase N-carbamoylsarcosine amidohydrolase (CSHase	100.0
PLN02621		197	nicotinamidase	100.0
PF00857		174	Isochorismatase: Isochorismatase family; InterPro:	100.0
COG1335		205	PncA Amidases related to nicotinamidase [Secondary	100.0
cd00431		161	cysteine_hydrolases Cysteine hydrolases; This fami	100.0
cd01014		155	nicotinamidase_related Nicotinamidase_ related ami	100.0
cd01012		157	YcaC_related YcaC related amidohydrolases; E.coli	100.0
COG1535		218	EntB Isochorismate hydrolase [Secondary metabolite	99.97
KOG4003		223	consensus Pyrazinamidase/nicotinamidase PNC1 [Defe	99.94
KOG4044		201	consensus Mitochondrial associated endoribonucleas	99.79

>PLN02743 nicotinamidase	Back alignment and domain information

Probab=100.00  E-value=8.3e-53  Score=364.21  Aligned_cols=238  Identities=71%  Similarity=1.244  Sum_probs=207.2

Q ss_pred             ChhhhHHHHHhhcCCCCcccccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEE
Q 025980            1 MVSQTIDILKNELPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAF   80 (245)
Q Consensus         1 ~~~~~~~~~~~~~p~~~~~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~   80 (245)
                      |||.|.|.+|.++|....++....++++|||||||||+|++++.|.++.......+..+++++++|++.||++|+||||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tALlVIDmQndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~   80 (239)
T PLN02743          1 MVSDTVDLLKKELPVEQESLVLNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAF   80 (239)
T ss_pred             ChHHHHHHHHHhCCCccccccccCCCCEEEEEEeCcCCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence            89999999999999755455544447999999999999998754555433222345678999999999999999999999


Q ss_pred             eccCCCCCCCCCCCCcccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeee
Q 025980           81 LDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVC  160 (245)
Q Consensus        81 ~d~h~~~~p~~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~  160 (245)
                      +++|.++..+..||.||+.||+|++++++|.|.+++....++.|++||+|++|+.+.+++.|.++|+++||++|+|+|++
T Consensus        81 ~d~h~~~~~~~~~~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~  160 (239)
T PLN02743         81 LDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGIC  160 (239)
T ss_pred             eCccCCCccccCCCCccCCCCcccccchhhCCCCCCceEEEEecCccccccccccccCccHHHHHHHHCCCCEEEEEEeC
Confidence            99998777667799999999999999999998776543347789999999998655554448999999999999999999


Q ss_pred             cCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccc
Q 025980          161 TDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLS  238 (245)
Q Consensus       161 Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~  238 (245)
                      ||+||+||.+|+|+|+++||.+|+++|+|++|||++++.+.|.+++++++..|+++.+|+.+|++|+.+||+|++...
T Consensus       161 T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  238 (239)
T PLN02743        161 TDICVLDFVASALSARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSKVS  238 (239)
T ss_pred             cchhccChHHHHHHHHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHHHHHHHHHHHhCCcEeeeeec
Confidence            999998777999999999998777789999999999999999999999999999999999999999999999998764

>PRK11609 nicotinamidase/pyrazinamidase; Provisional	Back alignment and domain information

>TIGR03614 RutB pyrimidine utilization protein B	Back alignment and domain information

>PTZ00331 alpha/beta hydrolase; Provisional	Back alignment and domain information

>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase)	Back alignment and domain information

>PRK11440 putative hydrolase; Provisional	Back alignment and domain information

>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems	Back alignment and domain information

>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	Back alignment and domain information

>PLN02621 nicotinamidase	Back alignment and domain information

>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes	Back alignment and domain information

>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	Back alignment and domain information

>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases	Back alignment and domain information

>cd01012 YcaC_related YcaC related amidohydrolases; E	Back alignment and domain information

>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]	Back alignment and domain information

>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		245
2wt9_A		235	Acinetobacter Baumanii Nicotinamidase Pyrazinamidea		1e-05
3pl1_A		186	Determination Of The Crystal Structure Of The Pyraz		2e-05
2wta_A		213	Acinetobacter Baumanii Nicotinamidase Pyrazinamidea		2e-05

>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease Length = 235

Back alignment and structure

Iteration: 1

Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 41/215 (19%) Query: 28 TGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTH--- 84 + LV+VD+ NGF GNLA + + I IN+ LA F + L D H Sbjct: 31 SALVVVDVQNGFTP--GGNLAVADADTIIP-TINQ---LAGCFENVVLTQDWHPDNHISF 84 Query: 85 ---HPNK-----------PEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGY 130 HP K + +P HCI GTH++ P L + + D Y Sbjct: 85 AANHPGKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSY 144 Query: 131 FGSIEDDGSNV--FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVV 188 +E D + + ++K I + VVG+ TD CV + + A +GF + + Sbjct: 145 SAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCV---AWTALDAVKQGF-----KTL 196 Query: 189 VYSAACATFDIPTHVATHTKGALAHPQEFMHHVGL 223 V AC D+ G+L + M G+ Sbjct: 197 VIEDACKGIDL--------NGSLEQAWQTMQQQGV 223

PyMOL of 2wt9

>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The Pyrazinamidase From M.Tuberculosis : A Structure-Function Analysis For Prediction Resistance To Pyrazinamide Length = 186

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		245
3o94_A		211	Nicotinamidase; hydrolase; 1.60A {Streptococcus pn	6e-29
3eef_A		182	N-carbamoylsarcosine amidase related protein; stru	5e-28
3hb7_A		204	Isochorismatase hydrolase; PS structural genomics,	3e-27
3gbc_A		186	Pyrazinamidase/nicotinamidas PNCA; nicotinamidase	1e-26
1im5_A		180	180AA long hypothetical pyrazinamidase/nicotinamid	9e-26
3r2j_A		227	Alpha/beta-hydrolase-like protein; nicotinamidase,	2e-23
3hu5_A		204	Isochorismatase family protein; structural genomic	4e-23
2wt9_A		235	Nicotinamidase; hydrolase, pyrazinamidase; HET: GO	4e-23
2fq1_A		287	Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy	2e-22
1nf9_A		207	Phenazine biosynthesis protein PHZD; isochorismata	1e-19
3kl2_A		226	Putative isochorismatase; structural genomics, unk	2e-19
3v8e_A		216	Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha	4e-19
3txy_A		199	Isochorismatase family protein family; structural	7e-19
3irv_A		233	Cysteine hydrolase; structural genomics, PSI-2, pr	1e-18
3ot4_A		236	Putative isochorismatase; NICF, maleamate hydrolas	2e-18
3lqy_A		190	Putative isochorismatase hydrolase; structural gen	2e-17
1j2r_A		199	Hypothetical isochorismatase family protein YECD;	1e-16
1nba_A		264	N-carbamoylsarcosine amidohydrolase; hydrolase(IN	5e-16
3oqp_A		211	Putative isochorismatase; catalytic triad, structu	9e-16
3mcw_A		198	Putative hydrolase; isochorismatase family, struct	6e-14
2a67_A		167	Isochorismatase family protein; structural genomic	4e-13
1yac_A		208	Ycacgp, YCAC gene product; unknown bacterial hydro	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1yzv_A		204	Hypothetical protein; structural genomics, PSI, pr	2e-04

>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* Length = 211	Back alignment and structure

 Score =  107 bits (269), Expect = 6e-29
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 34/195 (17%)

Query: 28  TGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPN 87
             L+ +D    F     G L    P + IS  I+   ++ R   +R   +   +D H  N
Sbjct: 23  KALISIDYTEDFVADS-GKLTAGAPAQAISDAIS---KVTRLAFERGDYIFFTIDAHEEN 78

Query: 88  KPEDP----YPTHCIAGTHESNLVPALQWIEKE----PNVTIRRKDCFDGYFGSIEDDGS 139
               P    +P H + GT   NL   L    +E      V    K  +  + G       
Sbjct: 79  DCFHPESKLFPPHNLIGTSGRNLYGDLGIFYQEHGSDSRVFWMDKRHYSAFSG------- 131

Query: 140 NVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTM-SARNRGFLRPLEEVVVYSAACATFD 198
                 ++  ++  +++ GV TDI VL     T   A N G+     ++ +   A A+  
Sbjct: 132 TDLDIRLRERRVSTVILTGVLTDISVL----HTAIDAYNLGY-----DIEIVKPAVASIW 182

Query: 199 IPTHVATHTKGALAH 213
              H       AL H
Sbjct: 183 PENHQF-----ALGH 192

PyMOL of 3o94

>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Length = 182	Back alignment and structure

>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Length = 204	Back alignment and structure

>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180	Back alignment and structure

>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Length = 227	Back alignment and structure

>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Length = 204	Back alignment and structure

>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Length = 235	Back alignment and structure

>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Length = 287	Back alignment and structure

>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Length = 207	Back alignment and structure

>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} Length = 226	Back alignment and structure

>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Length = 216	Back alignment and structure

>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} Length = 199	Back alignment and structure

>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Length = 233	Back alignment and structure

>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Length = 236	Back alignment and structure

>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Length = 199	Back alignment and structure

>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Length = 264	Back alignment and structure

>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211	Back alignment and structure

>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198	Back alignment and structure

>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167	Back alignment and structure

>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Length = 208	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Length = 204	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		245
3irv_A		233	Cysteine hydrolase; structural genomics, PSI-2, pr	100.0
3hb7_A		204	Isochorismatase hydrolase; PS structural genomics,	100.0
3lqy_A		190	Putative isochorismatase hydrolase; structural gen	100.0
3r2j_A		227	Alpha/beta-hydrolase-like protein; nicotinamidase,	100.0
3kl2_A		226	Putative isochorismatase; structural genomics, unk	100.0
3o94_A		211	Nicotinamidase; hydrolase; 1.60A {Streptococcus pn	100.0
3eef_A		182	N-carbamoylsarcosine amidase related protein; stru	100.0
3hu5_A		204	Isochorismatase family protein; structural genomic	100.0
3tg2_A		223	Vibriobactin-specific isochorismatase; hydrolase;	100.0
3v8e_A		216	Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha	100.0
4h17_A		197	Hydrolase, isochorismatase family; rossmann-like f	100.0
1nf9_A		207	Phenazine biosynthesis protein PHZD; isochorismata	100.0
3gbc_A		186	Pyrazinamidase/nicotinamidas PNCA; nicotinamidase	100.0
3mcw_A		198	Putative hydrolase; isochorismatase family, struct	100.0
1im5_A		180	180AA long hypothetical pyrazinamidase/nicotinamid	100.0
3oqp_A		211	Putative isochorismatase; catalytic triad, structu	100.0
3ot4_A		236	Putative isochorismatase; NICF, maleamate hydrolas	100.0
2wt9_A		235	Nicotinamidase; hydrolase, pyrazinamidase; HET: GO	100.0
2a67_A		167	Isochorismatase family protein; structural genomic	100.0
1j2r_A		199	Hypothetical isochorismatase family protein YECD;	100.0
2fq1_A		287	Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy	100.0
1nba_A		264	N-carbamoylsarcosine amidohydrolase; hydrolase(IN	100.0
3txy_A		199	Isochorismatase family protein family; structural	100.0
1yac_A		208	Ycacgp, YCAC gene product; unknown bacterial hydro	100.0
1yzv_A		204	Hypothetical protein; structural genomics, PSI, pr	100.0
1x9g_A		200	Putative MAR1; structural genomics, protein struct	100.0
2b34_A		199	F35G2.2, MAR1 ribonuclease; isochorismatase family	100.0

>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}	Back alignment and structure

Probab=100.00  E-value=1.1e-43  Score=305.73  Aligned_cols=198  Identities=16%  Similarity=0.252  Sum_probs=173.3

Q ss_pred             CCcccccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCCC----
Q 025980           16 ELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPED----   91 (245)
Q Consensus        16 ~~~~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~~----   91 (245)
                      +..++.+++ +++|||||||||+|++++ |++++++    ...+++++++|++.||..|+||||+++.|.++.+..    
T Consensus        12 ~~~~~~l~~-~~tALlvID~Q~~f~~~~-g~l~~~~----~~~vv~~i~~Ll~~ar~~g~pVi~t~~~~~~~~~~~~~~~   85 (233)
T 3irv_A           12 PLVRWPINP-LRTAVIVVDMQKVFCEPT-GALYVKS----TADIVQPIQKLLQAARAAQVMVIYLRHIVRGDGSDTGRMR   85 (233)
T ss_dssp             CCCCCCCCG-GGEEEEEECCBHHHHSTT-STTCCGG----GGGGHHHHHHHHHHHHHTTCEEEEEEECBCSSSTTCSHHH
T ss_pred             CccCCCCCC-CCeEEEEECCchhhhCCC-CcccCCC----HHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCccchhhhh
Confidence            445567888 699999999999999874 6776543    356899999999999999999999999887665542    


Q ss_pred             -CCCC---cccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceecc
Q 025980           92 -PYPT---HCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLD  167 (245)
Q Consensus        92 -~~~~---h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~  167 (245)
                       .||.   ||++||+|++|+++|.|.++   +.+|.|++||+|++|       +|+++|+++||++|+|||++|++||+ 
T Consensus        86 ~~~p~~~~~~~~gt~g~ei~~~l~p~~~---d~vi~K~~~saF~~t-------~L~~~L~~~gi~~lvi~G~~T~~CV~-  154 (233)
T 3irv_A           86 DLYPNVDQILARHDPDVEVIEALAPQSD---DVIVDKLFYSGFHNT-------DLDTVLRARDVDTIIVCGTVTNVCCE-  154 (233)
T ss_dssp             HHSTTHHHHSBTTCGGGSBCGGGCCCTT---SEEEEESSSCSSTTS-------THHHHHHHTTCCEEEEEEECTTTHHH-
T ss_pred             hhcCcccccccCCCCccccchhhCCCCC---CEEEECCccCCCcCC-------cHHHHHHhCCCCeEEEEeecccHHHH-
Confidence             3776   89999999999999998765   478999999999998       99999999999999999999999999 


Q ss_pred             chhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccchhhhh
Q 025980          168 FVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQT  243 (245)
Q Consensus       168 ~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~~~~~  243 (245)
                        +||++|+++||     +|+|++|||++++.+..      ++..++.++.|+.+|..|...|++|+++++++...
T Consensus       155 --~Ta~dA~~~Gy-----~V~vv~Da~as~d~~~~------~~~~~~~~~~h~~aL~~l~~~~a~V~tt~evl~~l  217 (233)
T 3irv_A          155 --TTIRDGVHREY-----KVIALSDANAAMDYPDV------GFGAVSAADVQRISLTTIAYEFGEVTTTAEVIRRI  217 (233)
T ss_dssp             --HHHHHHHHTTC-----EEEEEEEEEECCCBCCS------SSCCBCHHHHHHHHHHHHHHHTSEEECHHHHHHHH
T ss_pred             --HHHHHHHHCCC-----EEEEechhhccCccccc------ccccCChHHHHHHHHHHHHhcCcEEeEHHHHHHHH
Confidence              99999999999     99999999999987653      33456788999999999999999999999998754

PyMOL of 3irv

>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}	Back alignment and structure

>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}	Back alignment and structure

>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0	Back alignment and structure

>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A	Back alignment and structure

>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}	Back alignment and structure

>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}	Back alignment and structure

>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*	Back alignment and structure

>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A	Back alignment and structure

>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}	Back alignment and structure

>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*	Back alignment and structure

>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}	Back alignment and structure

>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A	Back alignment and structure

>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}	Back alignment and structure

>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A	Back alignment and structure

>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*	Back alignment and structure

>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}	Back alignment and structure

>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3	Back alignment and structure

>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}	Back alignment and structure

>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3	Back alignment and structure

>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0	Back alignment and structure

>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3	Back alignment and structure

>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}	Back alignment and structure

>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A	Back alignment and structure

>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		245
d1im5a_		179	c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa	9e-17
d1j2ra_		188	c.33.1.3 (A:) Hypothetical protein YecD {Escherich	1e-15
d1nbaa_		253	c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase	1e-14
d1nf9a_		207	c.33.1.3 (A:) Phenazine biosynthesis protein PhzD	1e-13
d1yaca_		204	c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]}	3e-11
d1x9ga_		192	c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova	2e-08

>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: Pyrazinamidase/nicotinamidase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 73.4 bits (179), Expect = 9e-17
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 27/184 (14%)

Query: 28  TGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPN 87
             L++VD+   F   GA  L   E ++    +I +     R F ++   ++A  D H  N
Sbjct: 3   EALIVVDMQRDFMPGGA--LPVPEGDK----IIPKVNEYIRKFKEKGALIVATRDWHPEN 56

Query: 88  KPE-----DPYPTHCIAGTHESNLVPAL-QWIEKEPNVTIRRKDCFDGYFGSIEDDGSNV 141
                    P+P HC+  T  +  V  L +        T   K+ + G+ G         
Sbjct: 57  HISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEG-------TD 109

Query: 142 FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPT 201
               ++ + ++++ + GV T+ CV     + + A   GF     EV +   A        
Sbjct: 110 LAKILRGNGVKRVYICGVATEYCVR---ATALDALKHGF-----EVYLLRDAVKGIKPED 161

Query: 202 HVAT 205
               
Sbjct: 162 EERA 165

PyMOL of d1im5a_

>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Length = 188	Back information, alignment and structure

>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Length = 253	Back information, alignment and structure

>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Length = 207	Back information, alignment and structure

>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204	Back information, alignment and structure

>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		245
d1nf9a_		207	Phenazine biosynthesis protein PhzD {Pseudomonas a	100.0
d1nbaa_		253	N-carbamoylsarcosine amidohydrolase {Arthrobacter	100.0
d1j2ra_		188	Hypothetical protein YecD {Escherichia coli [TaxId	100.0
d1im5a_		179	Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus	100.0
d1yaca_		204	YcaC {Escherichia coli [TaxId: 562]}	100.0
d1x9ga_		192	Ribonuclease MAR1 {Leishmania donovani [TaxId: 566	99.96

>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: Phenazine biosynthesis protein PhzD
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.7e-42  Score=291.17  Aligned_cols=187  Identities=20%  Similarity=0.207  Sum_probs=163.6

Q ss_pred             hhcCCCCcccccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCC
Q 025980           11 NELPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPE   90 (245)
Q Consensus        11 ~~~p~~~~~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~   90 (245)
                      .++|.+..+|.++| .++|||||||||+|+++. |       ......+++|+++|+++||+.|+||||+++.|..+.+.
T Consensus        16 ~~~~~~~~~~~~dp-~~tALlvVD~Qn~f~~~~-~-------~~~~~~~~~~i~~li~~ar~~g~~Vi~~~~~~~~~~~~   86 (207)
T d1nf9a_          16 QQLPANLARWSLEP-RRAVLLVHDMQRYFLRPL-P-------ESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQ   86 (207)
T ss_dssp             GGSCCCSSCCCCCG-GGEEEEEESCBHHHHTTS-C-------HHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCCHHH
T ss_pred             ccCCCCCCCCcCCC-CCEEEEEECChhhhhCcc-c-------cccHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCchh
Confidence            45777777788998 699999999999999852 1       12345689999999999999999999998776544322


Q ss_pred             -----CCCCCcccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCcee
Q 025980           91 -----DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICV  165 (245)
Q Consensus        91 -----~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV  165 (245)
                           ..|++||..|++|++++++|.|.++   +.+|.|++||+|++|       +|+.+|+++||++|+|||++||+||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~l~p~~~---d~vi~K~~~saF~~t-------~L~~~L~~~gi~~lvv~Gv~T~~CV  156 (207)
T d1nf9a_          87 RGLLKDFWGPGMRASPADREVVEELAPGPD---DWLLTKWRYSAFFHS-------DLLQRMRAAGRDQLVLCGVYAHVGV  156 (207)
T ss_dssp             HTTHHHHHTTCCCSSHHHHSBCGGGCCCTT---SEEEECCSSSTTTTS-------SHHHHHHHTTCCEEEEEEECTTTHH
T ss_pred             ccccccccCCcccCCCchhhhchhhCCCCC---eEEEEcccCCccccc-------hHHHHHHHcCCceeEEecccccccH
Confidence                 1378899999999999999999875   478999999999998       9999999999999999999999999


Q ss_pred             ccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccchhh
Q 025980          166 LDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSE  241 (245)
Q Consensus       166 ~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~~~  241 (245)
                      +   +|+++|+++||     +|+|++|||++++.+                 .|+.+|..|..+|++|++++++++
T Consensus       157 ~---~Ta~~A~~~gy-----~v~Vv~Da~~s~~~e-----------------~h~~~l~~~~~~~a~V~t~~evLe  207 (207)
T d1nf9a_         157 L---ISTVDAYSNDI-----QPFLVADAIADFSEA-----------------HHRMALEYAASRCAMVVTTDEVLE  207 (207)
T ss_dssp             H---HHHHHHHHTTC-----EEEEEEEEEECSSHH-----------------HHHHHHHHHHHHTCEEECHHHHHC
T ss_pred             H---HHHHHHHHCCC-----EEEEEccccCCCCHH-----------------HHHHHHHHHHhCCCEEeEHHHhhC
Confidence            9   99999999999     999999999998854                 489999999999999999999875

PyMOL of d1nf9a_

>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]}	Back information, alignment and structure

>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]}	Back information, alignment and structure