Citrus Sinensis ID: 025993

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MVLSKRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLAAKLNSYAAELCPPRIQKQIDAKIKDIIRKGWPILRDE
ccccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEcccccccccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccc
ccccccccccccHHcccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHcccccEEEEEEEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHHHcccccccEEccEEcHHHcEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHcccHHcccccccccccHHHHHHHHHccccccccc
mvlskrylFFSVLHLLLLTDtalcirfpdrvstsindelGRPLKAAVFALGSFWRSEAVFGCLNGVVRTtvgyaggsktnpefrnlgdhaesvqveydprvINFRQLLEVFWTshdcrqvfgqgpdvgnqYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVafypaepehqkfelkrnPFLIHlmgnlpqeeLEKSNLAAKLNSYaaelcppriqKQIDAKIKDIIRkgwpilrde
MVLSKRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFgqgpdvgnQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLAAKLNSYaaelcppriqkqidakikdiirkgwpilrde
MVLSKRYlffsvlhlllltdtalCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLAAKLNSYAAELCPPriqkqidakikdiirkGWPILRDE
****KRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTN**********************IVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLP********LAAKLNSYAAELCPPRIQKQIDAKIKDIIRKGWPIL***
*********FSVLHLLL*************************LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAA**K******SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLAAKLNSYAAELCPPRIQKQIDAKIKDIIRKGWPI****
MVLSKRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEES*******************TTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLAAKLNSYAAELCPPRIQKQIDAKIKDIIRKGWPILRDE
******************TDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLAAKLNSYAAELCPPRIQKQIDAKIKDIIRKGWPILR**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLSKRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLAAKLNSYAAELCPPRIQKQIDAKIKDIIRKGWPILRDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
Q9SL43254 Peptide methionine sulfox yes no 0.959 0.925 0.710 1e-101
Q5VPG8254 Peptide methionine sulfox yes no 0.804 0.775 0.736 2e-86
P08761246 Peptide methionine sulfox yes no 0.681 0.678 0.412 2e-33
Q6LYY1157 Peptide methionine sulfox yes no 0.620 0.968 0.394 3e-27
A9MEZ2212 Peptide methionine sulfox N/A no 0.595 0.688 0.438 4e-27
B4TT49212 Peptide methionine sulfox yes no 0.591 0.683 0.428 1e-26
A7MM56212 Peptide methionine sulfox yes no 0.591 0.683 0.428 4e-26
B2TZL3212 Peptide methionine sulfox yes no 0.591 0.683 0.428 4e-26
Q8ZK71212 Peptide methionine sulfox yes no 0.591 0.683 0.422 4e-26
B4T3H1212 Peptide methionine sulfox yes no 0.591 0.683 0.422 4e-26
>sp|Q9SL43|MSRA5_ARATH Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana GN=MSRA5 PE=2 SV=1 Back     alignment and function desciption
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 169/238 (71%), Positives = 202/238 (84%), Gaps = 3/238 (1%)

Query: 7   YLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGV 66
           + FF  + LL   D  + IR  +++S ++ D   RPLK+AVFALGSFWRSEA FGC+NGV
Sbjct: 19  FFFFLCVSLL---DKTVSIRISNQISDTVVDSPDRPLKSAVFALGSFWRSEAAFGCINGV 75

Query: 67  VRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPD 126
           VRT+ GYAGG+KTNPE+RNLGDHAESVQVEYDPR+I +RQLL+VFW+SHD RQVFGQGPD
Sbjct: 76  VRTSAGYAGGTKTNPEYRNLGDHAESVQVEYDPRIIGYRQLLDVFWSSHDSRQVFGQGPD 135

Query: 127 VGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKR 186
           VGNQYRS IFTN TEE RLA+ SKEREQ+ ++SSIVTTQIQQL  FY AEP+HQKFELK+
Sbjct: 136 VGNQYRSCIFTNSTEELRLASTSKEREQLNTRSSIVTTQIQQLGTFYRAEPDHQKFELKQ 195

Query: 187 NPFLIHLMGNLPQEELEKSNLAAKLNSYAAELCPPRIQKQIDAKIKDIIRKGWPILRD 244
           +PFLI L+GN+ +EELE+S LA KLN YAAELCPPRIQK ID+++ +IIRKGWP+LRD
Sbjct: 196 HPFLIQLIGNMVEEELERSALATKLNGYAAELCPPRIQKHIDSRVNEIIRKGWPVLRD 253
Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRA family specifically reduces the MetSO S-enantiomer.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 1
>sp|Q5VPG8|MSRA5_ORYSJ Peptide methionine sulfoxide reductase A5 OS=Oryza sativa subsp. japonica GN=MSRA5 PE=2 SV=1 Back     alignment and function description
>sp|P08761|MSRA_DROME Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2 Back     alignment and function description
>sp|Q6LYY1|MSRA_METMP Peptide methionine sulfoxide reductase MsrA OS=Methanococcus maripaludis (strain S2 / LL) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|A9MEZ2|MSRA_SALAR Peptide methionine sulfoxide reductase MsrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|B4TT49|MSRA_SALSV Peptide methionine sulfoxide reductase MsrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|A7MM56|MSRA_CROS8 Peptide methionine sulfoxide reductase MsrA OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|B2TZL3|MSRA_SHIB3 Peptide methionine sulfoxide reductase MsrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|Q8ZK71|MSRA_SALTY Peptide methionine sulfoxide reductase MsrA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|B4T3H1|MSRA_SALNS Peptide methionine sulfoxide reductase MsrA OS=Salmonella newport (strain SL254) GN=msrA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
344227187252 methionine sulfoxide reductase A5 [Solan 0.995 0.968 0.756 1e-106
225431171252 PREDICTED: peptide methionine sulfoxide 0.967 0.940 0.767 1e-105
255579821253 methionine sulfoxide reductase, putative 0.914 0.885 0.792 1e-103
356502124250 PREDICTED: peptide methionine sulfoxide 0.971 0.952 0.753 1e-101
297832444254 peptide methionine sulfoxide reductase f 0.959 0.925 0.722 1e-101
449434176252 PREDICTED: peptide methionine sulfoxide 0.959 0.932 0.741 1e-100
118489617252 unknown [Populus trichocarpa x Populus d 0.910 0.884 0.781 1e-100
224094957238 methionine sulfoxide reductase type [Pop 0.910 0.936 0.781 1e-99
15227955254 peptide methionine sulfoxide reductase A 0.959 0.925 0.710 4e-99
356559314250 PREDICTED: peptide methionine sulfoxide 0.959 0.94 0.743 2e-98
>gi|344227187|gb|AEN03273.1| methionine sulfoxide reductase A5 [Solanum lycopersicum] Back     alignment and taxonomy information
 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/251 (75%), Positives = 210/251 (83%), Gaps = 7/251 (2%)

Query: 1   MVLSKRYLFFS--VLH-----LLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSF 53
           M ++K   FFS    H     +LL  +  L IRFPDR+     D   +PL+ AVFALGSF
Sbjct: 1   MKVAKSNYFFSHFCFHFLFTIILLALNPVLSIRFPDRIQEVPQDASNQPLQTAVFALGSF 60

Query: 54  WRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWT 113
           WRSEA FGCLNG+VRTTVGY+GGSK NPE+RNLGDHAESVQVEYDPRV+ FRQLLEVFW+
Sbjct: 61  WRSEASFGCLNGIVRTTVGYSGGSKANPEYRNLGDHAESVQVEYDPRVLGFRQLLEVFWS 120

Query: 114 SHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFY 173
           SHD RQVFGQGPDVGNQYRSIIFT+GTEESRLAA SKEREQ KSKSSIVTTQIQQL AFY
Sbjct: 121 SHDSRQVFGQGPDVGNQYRSIIFTSGTEESRLAAVSKEREQSKSKSSIVTTQIQQLEAFY 180

Query: 174 PAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLAAKLNSYAAELCPPRIQKQIDAKIKD 233
           PAEPEHQKFELKRNPFL+ LMGNLP+EELE+S LA KLN YAAELCP RIQK+ID KI D
Sbjct: 181 PAEPEHQKFELKRNPFLLQLMGNLPEEELERSTLATKLNGYAAELCPSRIQKRIDGKIND 240

Query: 234 IIRKGWPILRD 244
           II+KGWPIL++
Sbjct: 241 IIKKGWPILKE 251

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431171|ref|XP_002269473.1| PREDICTED: peptide methionine sulfoxide reductase A5 [Vitis vinifera] gi|297735029|emb|CBI17391.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255579821|ref|XP_002530748.1| methionine sulfoxide reductase, putative [Ricinus communis] gi|223529712|gb|EEF31654.1| methionine sulfoxide reductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356502124|ref|XP_003519871.1| PREDICTED: peptide methionine sulfoxide reductase A5-like [Glycine max] Back     alignment and taxonomy information
>gi|297832444|ref|XP_002884104.1| peptide methionine sulfoxide reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329944|gb|EFH60363.1| peptide methionine sulfoxide reductase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449434176|ref|XP_004134872.1| PREDICTED: peptide methionine sulfoxide reductase A5-like [Cucumis sativus] gi|449491371|ref|XP_004158875.1| PREDICTED: peptide methionine sulfoxide reductase A5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118489617|gb|ABK96610.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224094957|ref|XP_002310304.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|222853207|gb|EEE90754.1| methionine sulfoxide reductase type [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15227955|ref|NP_179394.1| peptide methionine sulfoxide reductase A5 [Arabidopsis thaliana] gi|75266015|sp|Q9SL43.1|MSRA5_ARATH RecName: Full=Peptide methionine sulfoxide reductase A5; Short=AtMSRA5; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; AltName: Full=Protein-methionine-S-oxide reductase; Flags: Precursor gi|4406815|gb|AAD20123.1| putative peptide methionine sulfoxide reductase [Arabidopsis thaliana] gi|27765030|gb|AAO23636.1| At2g18030 [Arabidopsis thaliana] gi|110742978|dbj|BAE99383.1| putative peptide methionine sulfoxide reductase [Arabidopsis thaliana] gi|330251624|gb|AEC06718.1| peptide methionine sulfoxide reductase A5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356559314|ref|XP_003547945.1| PREDICTED: peptide methionine sulfoxide reductase A5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
TAIR|locus:2060907254 MSRA5 "AT2G18030" [Arabidopsis 0.897 0.866 0.7 3.6e-82
FB|FBgn0000565246 Eip71CD "Ecdysone-induced prot 0.677 0.674 0.415 6.7e-33
UNIPROTKB|P0A744212 msrA "methionine sulfoxide red 0.595 0.688 0.425 4e-26
DICTYBASE|DDB_G0276579147 msrA "peptide methionine sulfo 0.555 0.925 0.446 5.2e-26
UNIPROTKB|E2QV17233 MSRA "Uncharacterized protein" 0.579 0.609 0.446 8.4e-26
MGI|MGI:106916233 Msra "methionine sulfoxide red 0.579 0.609 0.42 4.2e-24
UNIPROTKB|Q9UJ68235 MSRA "Mitochondrial peptide me 0.579 0.604 0.413 1.1e-23
RGD|70979233 Msra "methionine sulfoxide red 0.579 0.609 0.413 1.1e-23
UNIPROTKB|F1RJP8233 MSRA "Uncharacterized protein" 0.579 0.609 0.42 1.4e-23
ZFIN|ZDB-GENE-050309-123238 im:7149628 "im:7149628" [Danio 0.571 0.588 0.401 1.4e-23
TAIR|locus:2060907 MSRA5 "AT2G18030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 154/220 (70%), Positives = 180/220 (81%)

Query:    25 IRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFR 84
             IR  +++S ++ D   RPLK+AVFALGSFWRSEA FGC+NGVVRT+ GYAGG+KTNPE+R
Sbjct:    34 IRISNQISDTVVDSPDRPLKSAVFALGSFWRSEAAFGCINGVVRTSAGYAGGTKTNPEYR 93

Query:    85 NLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESR 144
             NLGDHAESVQVEYDPR+I +RQLL+VFW+SHD RQVFGQGPDVGNQYRS IFTN TEE R
Sbjct:    94 NLGDHAESVQVEYDPRIIGYRQLLDVFWSSHDSRQVFGQGPDVGNQYRSCIFTNSTEELR 153

Query:   145 LAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEK 204
             LA+ SKEREQ+ ++SSIVTTQIQQL  FY AEP+HQKFELK++PFLI L+GN+ +EELE+
Sbjct:   154 LASTSKEREQLNTRSSIVTTQIQQLGTFYRAEPDHQKFELKQHPFLIQLIGNMVEEELER 213

Query:   205 SNLAAKLNSYAAELCPPXXXXXXXXXXXXXXXXGWPILRD 244
             S LA KLN YAAELCPP                GWP+LRD
Sbjct:   214 SALATKLNGYAAELCPPRIQKHIDSRVNEIIRKGWPVLRD 253
GO:0006464 "cellular protein modification process" evidence=ISS
GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA
GO:0019538 "protein metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
FB|FBgn0000565 Eip71CD "Ecdysone-induced protein 28/29kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P0A744 msrA "methionine sulfoxide reductase A" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276579 msrA "peptide methionine sulfoxide reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E2QV17 MSRA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:106916 Msra "methionine sulfoxide reductase A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UJ68 MSRA "Mitochondrial peptide methionine sulfoxide reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|70979 Msra "methionine sulfoxide reductase A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJP8 MSRA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050309-123 im:7149628 "im:7149628" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5VPG8MSRA5_ORYSJ1, ., 8, ., 4, ., 1, 10.73600.80400.7755yesno
Q9SL43MSRA5_ARATH1, ., 8, ., 4, ., 1, 10.71000.95910.9251yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.8.4LOW CONFIDENCE prediction!
4th Layer1.8.4.110.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036803001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (252 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00027935001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (141 aa)
• •   • 0.620
GSVIVG00005758001
SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_157, whole genome shot [...] (138 aa)
•••   • 0.592
GSVIVG00019868001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (138 aa)
•••   • 0.550

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
pfam01625147 pfam01625, PMSR, Peptide methionine sulfoxide redu 4e-54
PRK14054172 PRK14054, PRK14054, methionine sulfoxide reductase 3e-51
COG0225174 COG0225, MsrA, Peptide methionine sulfoxide reduct 1e-50
PRK13014186 PRK13014, PRK13014, methionine sulfoxide reductase 1e-47
PRK05550283 PRK05550, PRK05550, bifunctional methionine sulfox 8e-44
PRK00058213 PRK00058, PRK00058, methionine sulfoxide reductase 2e-42
TIGR00401149 TIGR00401, msrA, methionine-S-sulfoxide reductase 6e-42
PRK14018 521 PRK14018, PRK14018, trifunctional thioredoxin/meth 2e-23
PRK05528156 PRK05528, PRK05528, methionine sulfoxide reductase 6e-11
>gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase Back     alignment and domain information 
 Score =  170 bits (434), Expect = 4e-54
 Identities = 70/147 (47%), Positives = 87/147 (59%), Gaps = 6/147 (4%)

Query: 46  AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRV 101
           A FA G FW  EAVF  L GV+ T VGYAGG   NP +         HAE+V+V YDP  
Sbjct: 3   ATFAGGCFWGVEAVFEKLPGVISTEVGYAGGDTENPTYEEVCSGTTGHAEAVRVTYDPSK 62

Query: 102 INFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSI 161
           I++ +LLEVF+  HD   +  QG D G QYRS IF +  E+ ++A  S ER Q K    I
Sbjct: 63  ISYEELLEVFFEIHDPTDLNRQGNDRGTQYRSAIFYHDEEQKKIAEASLERLQKKFGKPI 122

Query: 162 VTTQIQQLVAFYPAEPEHQKFELKRNP 188
           V T+I+ L  FYPAE  HQ + L +NP
Sbjct: 123 V-TEIEPLTTFYPAEDYHQDY-LAKNP 147

This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine. Length = 147
>gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase Back     alignment and domain information
>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>gnl|CDD|235497 PRK05528, PRK05528, methionine sulfoxide reductase A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
COG0225174 MsrA Peptide methionine sulfoxide reductase [Postt 100.0
PRK13014186 methionine sulfoxide reductase A; Provisional 100.0
PRK14054172 methionine sulfoxide reductase A; Provisional 100.0
TIGR00401149 msrA methionine-S-sulfoxide reductase. This model 100.0
PRK05528156 methionine sulfoxide reductase A; Provisional 100.0
PRK00058213 methionine sulfoxide reductase A; Provisional 100.0
PF01625155 PMSR: Peptide methionine sulfoxide reductase; Inte 100.0
KOG1635191 consensus Peptide methionine sulfoxide reductase [ 100.0
PRK05550283 bifunctional methionine sulfoxide reductase B/A pr 100.0
PRK14018 521 trifunctional thioredoxin/methionine sulfoxide red 100.0
PF0040362 HMA: Heavy-metal-associated domain; InterPro: IPR0 93.5
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 84.4
COG260871 CopZ Copper chaperone [Inorganic ion transport and 82.81
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-71  Score=469.97  Aligned_cols=155  Identities=41%  Similarity=0.660  Sum_probs=146.9

Q ss_pred             CCCccEEEEcCCcccchhhhhccCCCeEEeeeeecCCCCCCCCccccC----CceeEEEEEEcCCCCCHHHHHHHHHhcC
Q 025993           40 GRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVINFRQLLEVFWTSH  115 (245)
Q Consensus        40 ~~~~~~a~fagGCFWg~Ea~F~~l~GV~~t~vGYaGG~~~~PtY~~v~----gHaEaV~V~yDp~~isy~~LL~~Ff~~h  115 (245)
                      ..++++|+||||||||+|+.|+++|||++|+|||+||+++||||++||    ||+|+|+|+|||++|||++||++||++|
T Consensus         3 ~~~~~~a~fagGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ih   82 (174)
T COG0225           3 PAGMEKAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIH   82 (174)
T ss_pred             cCCcEEEEEeccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheec
Confidence            357899999999999999999999999999999999999999999986    9999999999999999999999999999


Q ss_pred             CCCcCCCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHh-hcCCCceEEEEeeCCCcccCchhhhhhhhhcCCcceecc
Q 025993          116 DCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM-KSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLM  194 (245)
Q Consensus       116 dPt~~~rQg~d~G~QYRSaIf~~~e~q~~~A~~~~~~~~~-~~~~~~i~TeI~p~~~Fy~AEeyHQ~Y~l~k~P~~~~~l  194 (245)
                      |||+.||||||+|+||||+|||+|++|+++|+++++++++ ..+.+||+|||+|+++||+||||||+| |+|||..|+.+
T Consensus        83 DPT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Y-l~KNP~gY~~~  161 (174)
T COG0225          83 DPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEEYHQDY-LKKNPNGYCHI  161 (174)
T ss_pred             CCCCCCccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccccCcccHHHHHHH-HHhCCCCceee
Confidence            9999999999999999999999999999999999988877 456679999999999999999999999 68999877776


Q ss_pred             C
Q 025993          195 G  195 (245)
Q Consensus       195 ~  195 (245)
                      +
T Consensus       162 ~  162 (174)
T COG0225         162 G  162 (174)
T ss_pred             c
Confidence            3

>PRK13014 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK14054 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>TIGR00401 msrA methionine-S-sulfoxide reductase Back     alignment and domain information
>PRK05528 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK00058 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine [] Back     alignment and domain information
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
2iem_A211 Solution Structure Of An Oxidized Form (Cys51-Cys19 9e-27
1ff3_A211 Structure Of The Peptide Methionine Sulfoxide Reduc 9e-27
2gt3_A212 Solution Structure And Dynamics Of The Reduced Form 1e-26
2l90_A212 Solution Structure Of Murine Myristoylated Msra Len 1e-23
1fva_A217 Crystal Structure Of Bovine Methionine Sulfoxide Re 4e-23
4gwb_A168 Crystal Structure Of Putative Peptide Methionine Su 2e-22
1fvg_A199 Crystal Structure Of Bovine Peptide Methionine Sulf 2e-22
1nwa_A203 Structure Of Mycobacterium Tuberculosis Methionine 3e-20
2j89_A261 Functional And Structural Aspects Of Poplar Cytosol 3e-20
3bqf_A194 Structure Of The Central Domain (Msra) Of Neisseria 3e-17
3bqg_A194 Structure Of The Central Domain (msra) Of Neisseria 8e-17
3bqe_A194 Structure Of The Central Domain (Msra) Of Neisseria 1e-16
3bqh_A193 Structure Of The Central Domain (Msra) Of Neisseria 1e-16
3pin_B183 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 3e-16
3pil_A184 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 2e-15
3e0m_A 313 Crystal Structure Of Fusion Protein Of Msra And Msr 2e-15
3pim_A187 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 2e-15
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of E. Coli Methionine Sulfoxide Reductase A (Msra) Length = 211 Back     alignment and structure 
Iteration: 1

 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 43  LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
           ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YD
Sbjct: 42  MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVYD 101
Query: 99  PRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK 158
           P VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    
Sbjct: 102 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 161
Query: 159 SSI----VTTQIQQLVAFYPAEPEHQKFELKRNP 188
           ++     +TT+I     FY AE +HQ++ L +NP
Sbjct: 162 AADDDRHITTEIANATPFYYAEDDHQQY-LHKNP 194
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase From Escherichia Coli Length = 211 Back     alignment and structure
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of Methionine Sulfoxide Reductase A From Escherichia Coli, A 23 Kda Protein Length = 212 Back     alignment and structure
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra Length = 212 Back     alignment and structure
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase Length = 217 Back     alignment and structure
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide Reductase From Sinorhizobium Meliloti 1021 Length = 168 Back     alignment and structure
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide Reductase Length = 199 Back     alignment and structure
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine Sulfoxide Reductase A In Complex With Protein-Bound Methionine Length = 203 Back     alignment and structure
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Length = 261 Back     alignment and structure
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Complex With A Substrate) Length = 194 Back     alignment and structure
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria Meningitidis Pilb (sulfenic Acid Form) Length = 194 Back     alignment and structure
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 194 Back     alignment and structure
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Oxidized Form) Length = 193 Back     alignment and structure
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 183 Back     alignment and structure
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Reduced Form Length = 184 Back     alignment and structure
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313 Back     alignment and structure
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Unusual Oxidized Form Length = 187 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 3e-58
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 3e-55
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 1e-54
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 3e-54
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 4e-54
3pim_A187 Peptide methionine sulfoxide reductase; methionine 2e-51
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 1e-50
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Length = 203 Back     alignment and structure
 Score =  182 bits (465), Expect = 3e-58
 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 39  LGRPLKA--------AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHA 90
               ++         A+ A G FW  + +     GVV T VGY+GG+  N  +RN G HA
Sbjct: 13  SSGHIEGRHMTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHA 72

Query: 91  ESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSK 150
           E+V++ +DP V ++R LLE F+  HD      QG D G  YRS IF    ++ R+A  + 
Sbjct: 73  EAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTI 132

Query: 151 EREQMKSK-SSIVTTQIQQLVAFYPAEPEHQKFELKRNP 188
              +        V T++     F+ AEPEHQ + L+R P
Sbjct: 133 ADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDY-LQRYP 170
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Length = 211 Back     alignment and structure
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Length = 261 Back     alignment and structure
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Length = 199 Back     alignment and structure
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Length = 193 Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Length = 187 Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
4gwb_A168 Peptide methionine sulfoxide reductase MSRA 3; str 100.0
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 100.0
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 100.0
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 100.0
3pim_A187 Peptide methionine sulfoxide reductase; methionine 100.0
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 100.0
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 100.0
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 100.0
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 95.43
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 94.78
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 94.57
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 94.46
2l3m_A71 Copper-ION-binding protein; structural genomics, c 94.07
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 94.02
1opz_A76 Potential copper-transporting ATPase; mutation, fo 93.94
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 93.84
1yjr_A75 Copper-transporting ATPase 1; metallochaperone, pr 93.48
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 93.44
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 93.42
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 93.41
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 93.22
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 93.2
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 93.2
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 93.15
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 92.8
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 92.53
4a4j_A69 Pacszia, cation-transporting ATPase PACS; hydrolas 92.04
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 91.85
1yg0_A66 COP associated protein; open-faced beta-sandwich, 91.43
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 90.64
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 89.94
2kkh_A95 Putative heavy metal transporter; zinc transport, 89.06
1mwy_A73 ZNTA; open-faced beta-sandwich fold, beta-alpha-be 87.45
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 87.33
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 86.79
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 83.84
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 82.23
3fry_A73 Probable copper-exporting P-type ATPase A; transpo 80.18
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=5.6e-70  Score=462.94  Aligned_cols=151  Identities=36%  Similarity=0.630  Sum_probs=142.3

Q ss_pred             ccEEEEcCCcccchhhhhccCCCeEEeeeeecCCCCCCCCccccCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCcCCC
Q 025993           43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFG  122 (245)
Q Consensus        43 ~~~a~fagGCFWg~Ea~F~~l~GV~~t~vGYaGG~~~~PtY~~v~gHaEaV~V~yDp~~isy~~LL~~Ff~~hdPt~~~r  122 (245)
                      .++|+||||||||+|++|++++||++|+|||+||+++||||+++|+|+|+|+|+|||++|||++||++||++||||+.||
T Consensus         2 te~A~fagGCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~isy~~LL~~F~~~hDPT~~nr   81 (168)
T 4gwb_A            2 TKRAVLAGGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQIHDPTTKDR   81 (168)
T ss_dssp             CEEEEEEESCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTTE
T ss_pred             ceEEEEEccCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCCCHHHHHHHHHhhcCCcCcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhh-cCCCceEEEEeeCCCcccCchhhhhhhhhcCCcce-ecc
Q 025993          123 QGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMK-SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLI-HLM  194 (245)
Q Consensus       123 Qg~d~G~QYRSaIf~~~e~q~~~A~~~~~~~~~~-~~~~~i~TeI~p~~~Fy~AEeyHQ~Y~l~k~P~~~-~~l  194 (245)
                      ||+|+|+||||+|||+|++|+++|+++++++++. .+.++|+|+|+|+.+||+||+|||+| ++|||..+ |++
T Consensus        82 Qg~D~G~QYRS~If~~~~~Q~~~a~~~~~~l~~~~~~~~~IvTei~p~~~Fy~AE~yHQ~Y-l~knP~~y~Ch~  154 (168)
T 4gwb_A           82 QGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQNY-LERYPNGYTCHF  154 (168)
T ss_dssp             ETTEESGGGCEEEEESSHHHHHHHHHHHHHHHHHTCSSSCCCCEEEECCCEEECCGGGTTH-HHHSTTSCCCCC
T ss_pred             CCCCCCcCceEEEecCCHHHHHHHHHHHHHHHHcccCCCCEEEEEEecCCeeECHHHHHHH-HHhCCCCCccCc
Confidence            9999999999999999999999999988876654 45679999999999999999999999 57999855 554
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Back     alignment and structure
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Back     alignment and structure
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Back     alignment and structure
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Back     alignment and structure
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Back     alignment and structure
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Back     alignment and structure
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Back     alignment and structure
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1ff3a_211 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 3e-35
d1nwaa_168 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 3e-31
d1fvga_192 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 6e-31
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (308), Expect = 3e-35
 Identities = 65/165 (39%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 39  LGRPLKA-------AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG---- 87
            G  +         A+FA+G FW  E +F  L GV  T  GY GG   NP +R +     
Sbjct: 31  NGHSMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDT 90

Query: 88  DHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAA 147
            HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A 
Sbjct: 91  GHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAAR 150

Query: 148 HSKEREQMK----SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 188
            S ER Q           +TT+I     FY AE +HQ++ L +NP
Sbjct: 151 ASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNP 194
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 168 Back     information, alignment and structure
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1nwaa_168 Peptide methionine sulfoxide reductase {Mycobacter 100.0
d1fvga_192 Peptide methionine sulfoxide reductase {Cow (Bos t 100.0
d1ff3a_211 Peptide methionine sulfoxide reductase {Escherichi 100.0
d1osda_72 Mercuric ion binding protein MerP {Ralstonia metal 97.15
d1cpza_68 Copper chaperone {Enterococcus hirae [TaxId: 1354] 97.01
d2aw0a_72 Menkes copper-transporting ATPase {Human (Homo sap 96.84
d1q8la_84 Menkes copper-transporting ATPase {Human (Homo sap 96.8
d1p6ta172 Potential copper-translocating P-type ATPase CopA 96.73
d1p6ta279 Potential copper-translocating P-type ATPase CopA 96.64
d2qifa169 Copper chaperone {Bacillus subtilis, CopZ [TaxId: 96.5
d1kvja_79 Menkes copper-transporting ATPase {Human (Homo sap 96.48
d2ggpb172 Copper transporter domain ccc2a {Baker's yeast (Sa 95.87
d2phcb284 Uncharacterized protein PH0987 {Pyrococcus horikos 91.01
d1mwza_73 Metal ion-transporting ATPase ZntA, N-terminal dom 88.75
d1qupa272 Copper chaperone for superoxide dismutase, N-termi 84.1
d1sb6a_64 Copper chaperone {Synechocystis sp. pcc 6803, Scat 82.81
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7.8e-67  Score=441.78  Aligned_cols=147  Identities=37%  Similarity=0.601  Sum_probs=140.0

Q ss_pred             CccEEEEcCCcccchhhhhccCCCeEEeeeeecCCCCCCCCccccCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCcCC
Q 025993           42 PLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVF  121 (245)
Q Consensus        42 ~~~~a~fagGCFWg~Ea~F~~l~GV~~t~vGYaGG~~~~PtY~~v~gHaEaV~V~yDp~~isy~~LL~~Ff~~hdPt~~~  121 (245)
                      ..++|+||||||||+|+.|++++||++|+|||+||+++||||+++|+|+|+|+|+|||++|||++||++||.+||||+.|
T Consensus         5 ~~~~a~~agGCFWg~E~~f~~l~GV~~t~~GYagG~~~~PtY~~v~~H~E~V~V~yDp~~is~~~Ll~~ff~~hdPt~~~   84 (168)
T d1nwaa_           5 SNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKD   84 (168)
T ss_dssp             CCEEEEEEESCHHHHHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTT
T ss_pred             ccceEEEEcCCccccHHHHhcCCCEEEEEeeecccCCCCceeecccccceEEEEEEecccccHHHHHHHHHHhcCCcccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhh-cCCCceEEEEeeCCCcccCchhhhhhhhhcCCc
Q 025993          122 GQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMK-SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPF  189 (245)
Q Consensus       122 rQg~d~G~QYRSaIf~~~e~q~~~A~~~~~~~~~~-~~~~~i~TeI~p~~~Fy~AEeyHQ~Y~l~k~P~  189 (245)
                      |||+|+|+||||+||++|++|+++|+.+++++++. .+.++|+|+|+|+.+||+||+|||+|| +|||.
T Consensus        85 ~Qg~D~G~QYRS~If~~~~~Q~~~a~~~i~~~~~~~~~~~~IvTeI~~~~~F~~AEeyHQ~Yl-~Knp~  152 (168)
T d1nwaa_          85 RQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYL-QRYPN  152 (168)
T ss_dssp             EETTEESGGGCEEEEESSHHHHHHHHHHHHHHHHHCCSSSCCCCEEEECCCEEECCGGGTTHH-HHSTT
T ss_pred             ccCCCCCccceeeEEeeccchHHHHHHHHHHHHHhhccCCceEEEEeccCCEEEcHHHHHHHH-HhCCC
Confidence            99999999999999999999999999988776664 456799999999999999999999995 78996
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Back     information, alignment and structure