Citrus Sinensis ID: 026000

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MASCKVPSCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKDYDGQ
cccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEccccEEEEccccccccccccEEEEEEEEccccccccccccEEEEcccccccccccccEEEEEEEEEEcccEEEEEEEEEccccEEEEEEEEEEEcccccccEEEEEEEEccccccccEEEEEEcccEEEEEEEEEccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccEEEEEEHHHHccccccEEHHHEEccccccccccccccccccEEEccccEEEEEEcccccccccccEEEEEEEccccccccccccccEEEccccccEEEEcccEEEEEEEEEcccccEEEEEEEcccccEEEEEEEEEEEccccccEEEEEEEEEEcccccccEEEEEEccccEEEEEEEEEcccccccccccc
masckvpscGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLvdasqgrpmpetLFGIFFEEINHAGAGGLWAELVSnrgfeaggqnipsnidpwaiigndsslivstdrsscferNKVALRMEVLCdsqgtnicpvggvgvynpgywgmgikqgktYKVVFYIRSLGSVNILVSLtssnglqtlaTSNIiasasdvsnWTRVETLLEAketnpnarlqlttsrkgviwfdqvsampldtykdydgq
MASCKVPSCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCdsqgtnicpvgGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSniiasasdvsnWTRVETLleaketnpnarlqlttsrkgviwfdqvsampldtykdydgq
MASCKVPSCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPvggvgvYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKDYDGQ
****KVPSCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAK*****ARLQLTTSRKGVIWFDQVSAMPLDT*******
*********GVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYK*****
MASCKVPSCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKDYDGQ
**SCKVPSCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYK*****
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASCKVPSCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKDYDGQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
Q9SG80 678 Alpha-L-arabinofuranosida yes no 0.934 0.337 0.670 6e-90
Q8VZR2 674 Alpha-L-arabinofuranosida no no 0.934 0.339 0.668 3e-85
P82593 825 Alpha-N-arabinofuranosida N/A no 0.718 0.213 0.301 1e-11
Q2U790 629 Probable alpha-N-arabinof no no 0.665 0.259 0.303 5e-10
B8NKA3 629 Probable alpha-N-arabinof N/A no 0.665 0.259 0.303 5e-10
Q8NK90 628 Alpha-N-arabinofuranosida N/A no 0.710 0.277 0.278 3e-09
Q96X54 628 Probable alpha-N-arabinof N/A no 0.710 0.277 0.278 3e-09
Q0CTV2 628 Probable alpha-N-arabinof N/A no 0.783 0.305 0.25 1e-08
P42254 628 Alpha-N-arabinofuranosida yes no 0.677 0.264 0.274 2e-08
A2Q7E0 628 Probable alpha-N-arabinof yes no 0.677 0.264 0.274 2e-08
>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1 Back     alignment and function desciption
 Score =  330 bits (846), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 159/237 (67%), Positives = 191/237 (80%), Gaps = 8/237 (3%)

Query: 11  VLLLLFFIGTCFLFQCFA---AEVEVNQTARLLVDASQG--RPMPETLFGIFFEEINHAG 65
           V +L F +G+CF++Q      A+ +      L VDAS G  RP+PETLFGIFFEEINHAG
Sbjct: 12  VCVLSFLLGSCFVYQSLRVVDAQEDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAG 71

Query: 66  AGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLC 125
           AGGLWAELVSNRGFEAGGQN PSNI PW+I+G+ SS+ V+TDRSSCFERNK+ALRM+VLC
Sbjct: 72  AGGLWAELVSNRGFEAGGQNTPSNIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLC 131

Query: 126 DSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLAT 185
           DS+G   CP GGVGVYNPGYWGM I++GK YKV  Y+RS G +++ VSLTSSNG +TLA+
Sbjct: 132 DSKG---CPSGGVGVYNPGYWGMNIEEGKKYKVALYVRSTGDIDLSVSLTSSNGSRTLAS 188

Query: 186 SNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKDY 242
             IIASASDVS W + E LLEAK T+P+ARLQLTT++KG IW DQVSAMP+DT+K +
Sbjct: 189 EKIIASASDVSKWIKKEVLLEAKATDPSARLQLTTTKKGSIWIDQVSAMPVDTHKGH 245
May be involved in the coordinated dissolution of the cell wall matrix during abscission and in the secondary cell wall formation in xylem vessels. Prefers arabinoxylan, but may also use pectic arabinans as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: -
>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1 Back     alignment and function description
>sp|P82593|ABF1_STRCX Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1 Back     alignment and function description
>sp|Q2U790|ABFA_ASPOR Probable alpha-N-arabinofuranosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=abfA PE=3 SV=2 Back     alignment and function description
>sp|B8NKA3|ABFA_ASPFN Probable alpha-N-arabinofuranosidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=abfA PE=3 SV=2 Back     alignment and function description
>sp|Q8NK90|ABFA_ASPKW Alpha-N-arabinofuranosidase A OS=Aspergillus kawachii (strain NBRC 4308) GN=abfA PE=1 SV=2 Back     alignment and function description
>sp|Q96X54|ABFA_ASPAW Probable alpha-N-arabinofuranosidase A OS=Aspergillus awamori GN=abfA PE=1 SV=1 Back     alignment and function description
>sp|Q0CTV2|ABFA_ASPTN Probable alpha-N-arabinofuranosidase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=abfA PE=3 SV=1 Back     alignment and function description
>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1 SV=1 Back     alignment and function description
>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
224086707 670 predicted protein [Populus trichocarpa] 0.963 0.352 0.768 1e-106
224137544 667 predicted protein [Populus trichocarpa] 0.975 0.358 0.752 1e-103
255565362 678 Alpha-N-arabinofuranosidase 1 precursor, 0.987 0.356 0.739 1e-102
116739148 677 alpha-L-arabinofuranosidase [Prunus pers 0.906 0.327 0.763 1e-98
37777015 674 alpha-L-arabinofuranosidase [Pyrus pyrif 0.975 0.354 0.709 1e-98
157313302 677 alpha-L-arabinofuranosidase protein [Pru 0.906 0.327 0.763 1e-98
119507455 675 alpha-Arabinosidase1 [Pyrus communis] 0.975 0.354 0.704 1e-97
33151175 675 alpha-L-arabinofuranosidase [Malus x dom 0.975 0.354 0.709 2e-96
258640136 710 ripening-reduced alpha-L-arabinofuranosi 0.979 0.338 0.733 1e-95
311294335 698 alpha-N-arabinofuranosidase [Gunnera man 0.942 0.330 0.712 2e-95
>gi|224086707|ref|XP_002307940.1| predicted protein [Populus trichocarpa] gi|222853916|gb|EEE91463.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/238 (76%), Positives = 210/238 (88%), Gaps = 2/238 (0%)

Query: 8   SCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAG 67
           SC VLL+ FF+G C ++QC AAEV+  QTA+L+V+AS GRP+PETLFGIFFEEINHAGAG
Sbjct: 7   SCSVLLVCFFVGLCSVYQCSAAEVDAYQTAKLIVNASSGRPIPETLFGIFFEEINHAGAG 66

Query: 68  GLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDS 127
           G+WAELVSNRGFEAGGQN PSNI PW+IIG+ SSL VSTDRSSCFERNKVALRM VLCDS
Sbjct: 67  GIWAELVSNRGFEAGGQNTPSNIAPWSIIGDQSSLTVSTDRSSCFERNKVALRMHVLCDS 126

Query: 128 QGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSN 187
           +G+NICP GGVG+YNPG+WGM I+QGK YKVV Y+RSLGS+N+ VSLTSS+GLQ LAT+N
Sbjct: 127 EGSNICPAGGVGIYNPGFWGMNIEQGKIYKVVLYVRSLGSINVSVSLTSSDGLQILATAN 186

Query: 188 IIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKDYDGQ 245
           I+   SDVSNWT+ E LLEAK TNPN+RLQLTTSRKGVIWFDQVSAMPL+TYK +  Q
Sbjct: 187 IV--DSDVSNWTKTEVLLEAKGTNPNSRLQLTTSRKGVIWFDQVSAMPLETYKGHGFQ 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224137544|ref|XP_002322584.1| predicted protein [Populus trichocarpa] gi|222867214|gb|EEF04345.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565362|ref|XP_002523672.1| Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] gi|223537072|gb|EEF38707.1| Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|116739148|gb|ABF22680.3| alpha-L-arabinofuranosidase [Prunus persica] Back     alignment and taxonomy information
>gi|37777015|dbj|BAC99303.1| alpha-L-arabinofuranosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|157313302|gb|ABV32544.1| alpha-L-arabinofuranosidase protein [Prunus persica] Back     alignment and taxonomy information
>gi|119507455|dbj|BAF42035.1| alpha-Arabinosidase1 [Pyrus communis] Back     alignment and taxonomy information
>gi|33151175|gb|AAP97437.1| alpha-L-arabinofuranosidase [Malus x domestica] Back     alignment and taxonomy information
>gi|258640136|gb|ACV85694.1| ripening-reduced alpha-L-arabinofuranosidase [Carica papaya] Back     alignment and taxonomy information
>gi|311294335|gb|ADP88923.1| alpha-N-arabinofuranosidase [Gunnera manicata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
TAIR|locus:2103172 678 ASD1 "alpha-L-arabinofuranosid 0.934 0.337 0.649 1.6e-79
TAIR|locus:2180652 674 ASD2 "alpha-L-arabinofuranosid 0.934 0.339 0.646 5e-76
UNIPROTKB|G4N0I3 646 MGG_05809 "Alpha-N-arabinofura 0.787 0.298 0.273 3e-14
UNIPROTKB|B8NKA3 629 abfA "Probable alpha-N-arabino 0.702 0.273 0.292 3e-10
UNIPROTKB|Q2U790 629 abfA "Probable alpha-N-arabino 0.702 0.273 0.292 3e-10
UNIPROTKB|Q8NK90 628 abfA "Alpha-N-arabinofuranosid 0.677 0.264 0.274 1.8e-08
UNIPROTKB|Q96X54 628 abfA "Probable alpha-N-arabino 0.677 0.264 0.274 1.8e-08
UNIPROTKB|Q0CTV2 628 abfA "Probable alpha-N-arabino 0.673 0.262 0.251 5.7e-08
UNIPROTKB|G4NBZ0 667 MGG_01147 "Alpha-N-arabinofura 0.767 0.281 0.266 6.2e-08
UNIPROTKB|A2Q7E0 628 abfA "Probable alpha-N-arabino 0.677 0.264 0.263 7.4e-08
TAIR|locus:2103172 ASD1 "alpha-L-arabinofuranosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 154/237 (64%), Positives = 186/237 (78%)

Query:    11 VLLLLFFIGTCFLFQCFA---AEVEVNQTARLLVDASQG--RPMPETLFGIFFEEINHAG 65
             V +L F +G+CF++Q      A+ +      L VDAS G  RP+PETLFGIFFEEINHAG
Sbjct:    12 VCVLSFLLGSCFVYQSLRVVDAQEDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAG 71

Query:    66 AGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLC 125
             AGGLWAELVSNRGFEAGGQN PSNI PW+I+G+ SS+ V+TDRSSCFERNK+ALRM+VLC
Sbjct:    72 AGGLWAELVSNRGFEAGGQNTPSNIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLC 131

Query:   126 DSQGTNICPXXXXXXYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLAT 185
             DS+G   CP      YNPGYWGM I++GK YKV  Y+RS G +++ VSLTSSNG +TLA+
Sbjct:   132 DSKG---CPSGGVGVYNPGYWGMNIEEGKKYKVALYVRSTGDIDLSVSLTSSNGSRTLAS 188

Query:   186 SNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKDY 242
               IIASASDVS W + E LLEAK T+P+ARLQLTT++KG IW DQVSAMP+DT+K +
Sbjct:   189 EKIIASASDVSKWIKKEVLLEAKATDPSARLQLTTTKKGSIWIDQVSAMPVDTHKGH 245
GO:0005576 "extracellular region" evidence=ISM
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0046373 "L-arabinose metabolic process" evidence=IEA
GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IEA;IDA
GO:0009044 "xylan 1,4-beta-xylosidase activity" evidence=IDA
GO:0045493 "xylan catabolic process" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2180652 ASD2 "alpha-L-arabinofuranosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N0I3 MGG_05809 "Alpha-N-arabinofuranosidase A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|B8NKA3 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus flavus NRRL3357 (taxid:332952)] Back     alignment and assigned GO terms
UNIPROTKB|Q2U790 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus oryzae RIB40 (taxid:510516)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NK90 abfA "Alpha-N-arabinofuranosidase A" [Aspergillus kawachii IFO 4308 (taxid:1033177)] Back     alignment and assigned GO terms
UNIPROTKB|Q96X54 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus awamori (taxid:105351)] Back     alignment and assigned GO terms
UNIPROTKB|Q0CTV2 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus terreus NIH2624 (taxid:341663)] Back     alignment and assigned GO terms
UNIPROTKB|G4NBZ0 MGG_01147 "Alpha-N-arabinofuranosidase A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|A2Q7E0 abfA "Probable alpha-N-arabinofuranosidase A" [Aspergillus niger CBS 513.88 (taxid:425011)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VI0086
hypothetical protein (670 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.III.271.1
hypothetical protein (854 aa)
  •     0.451
estExt_fgenesh4_pg.C_LG_I0347
hypothetical protein (858 aa)
  •     0.449
fgenesh4_pg.C_LG_XIV000628
hypothetical protein (140 aa)
  •     0.414

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
pfam02018134 pfam02018, CBM_4_9, Carbohydrate binding domain 7e-04
>gnl|CDD|216848 pfam02018, CBM_4_9, Carbohydrate binding domain Back     alignment and domain information 
 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 27/153 (17%)

Query: 71  AELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGT 130
             L+ N  FE GG      +  W   G      V     +                S  T
Sbjct: 1   GNLIKNGTFEDGG------LGGWKARGGSVKATV---DVTSHNGTYSLKV------SGRT 45

Query: 131 NICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIR---SLGSVNILVSLTSSNGLQTLATSN 187
                    + +     + +++G TY V F+++      ++++ + +T ++G        
Sbjct: 46  AT---WDGAIIDIT---IRLEKGTTYTVSFWVKASSGPQTISVTLQITDASGNYDTVADE 99

Query: 188 IIASASDVSNWTRVETLLEAKETNPNARLQLTT 220
            +    +   WT++E       T     L +  
Sbjct: 100 KVVLTGE---WTKLEGTFTIPGTASTVELYVEL 129

This family includes diverse carbohydrate binding domains. Length = 134

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
PF02018131 CBM_4_9: Carbohydrate binding domain; InterPro: IP 99.45
PF04862159 DUF642: Protein of unknown function (DUF642); Inte 98.59
PLN03089373 hypothetical protein; Provisional 98.28
PLN03089 373 hypothetical protein; Provisional 98.05
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 96.18
smart00606129 CBD_IV Cellulose Binding Domain Type IV. 95.53
PF15425212 DUF4627: Domain of unknown function (DUF4627); PDB 93.96
cd06263157 MAM Meprin, A5 protein, and protein tyrosine phosp 93.71
PF03425178 CBM_11: Carbohydrate binding domain (family 11); I 93.6
PF00629160 MAM: MAM domain; InterPro: IPR000998 MAM is an acr 93.25
smart00137161 MAM Domain in meprin, A5, receptor protein tyrosin 93.2
PF1064888 Gmad2: Immunoglobulin-like domain of bacterial spo 88.07
COG3534 501 AbfA Alpha-L-arabinofuranosidase [Carbohydrate tra 86.9
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus Back     alignment and domain information 
Probab=99.45  E-value=9.9e-12  Score=97.39  Aligned_cols=125  Identities=22%  Similarity=0.404  Sum_probs=87.5

Q ss_pred             hhhhcCCCcccCCCCCCCCCCCceEecCCeeEEEecCCCCcccCCcceEEEEEecCCCCccccCCCceEEEccCccceec
Q 026000           71 AELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGI  150 (245)
Q Consensus        71 AELi~NRsFE~~~~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~n~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi~v  150 (245)
                      +|||+|++||..      .+.+|...+... .....+..    ...++|+|.-...        ....-+.+   .++.|
T Consensus         1 ~nli~N~~Fe~~------~~~~W~~~~~~~-~~~~~~~~----~g~~~l~v~~~~~--------~~~~~~~~---~~~~l   58 (131)
T PF02018_consen    1 GNLIKNGGFEDG------GLSGWSFWGNSG-ASASVDNA----SGNYSLKVSNRSA--------TWDGQSQQ---QTISL   58 (131)
T ss_dssp             GBSSSSTTSTTT------STTTEEEESSTT-EEEEEEEC----SSSEEEEEECCSS--------GCGEEEEE---EEEEE
T ss_pred             CCEEECCCccCC------CCCCCEEccCCC-EEEEEEcC----CCeEEEEEECCCC--------Ccccccee---cceEe
Confidence            489999999973      478999987663 22222211    3456776653211        11222333   45999


Q ss_pred             ccCCEEEEEEEEEeCCCeeEEEEEEeCCC-C-eeEEEEEEEeeecCCCCcEEEEEEEEecCCCCcceEEEEeC
Q 026000          151 KQGKTYKVVFYIRSLGSVNILVSLTSSNG-L-QTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTS  221 (245)
Q Consensus       151 ~~G~tY~~Sf~ar~~~~~~vtV~L~~~~g-~-~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t~~~a~L~I~~~  221 (245)
                      ++|++|++|||+|.+...++.+++...++ . ..+....+..    .++|++|+++|+++.+....+|.|.+.
T Consensus        59 ~~G~~Y~~s~~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~W~~~s~~ft~~~~~~~~~l~~~~~  127 (131)
T PF02018_consen   59 KPGKTYTVSFWVKADSGGTVSVSLRDEDGSPYNWYTGQTVTI----TGEWTKYSGTFTAPSDDDTVRLYFEIG  127 (131)
T ss_dssp             -TTSEEEEEEEEEESSSEEEEEEEEESSTTTEEEEEEEEEEE----TSSEEEEEEEEEEESSCEEEEEEEEES
T ss_pred             cCCCEEEEEEEEEeCCCCEEEEEEEEcCCCCcEEEEEEEEEC----CCCcEEEEEEEEECCCCceEEEEEEec
Confidence            99999999999999877889999998876 2 2333334443    589999999999998888999998873

These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins Back     alignment and domain information
>PLN03089 hypothetical protein; Provisional Back     alignment and domain information
>PLN03089 hypothetical protein; Provisional Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>smart00606 CBD_IV Cellulose Binding Domain Type IV Back     alignment and domain information
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A Back     alignment and domain information
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain Back     alignment and domain information
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu Back     alignment and domain information
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others) Back     alignment and domain information
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins Back     alignment and domain information
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1gui_A155 Laminarinase 16A; carbohydrate binding module, CBM 2e-09
3p6b_A205 Cellulose 1,4-beta-cellobiosidase; beta-sandwich, 2e-05
2w5f_A 540 Endo-1,4-beta-xylanase Y; cellulosome, glycosidase 5e-04
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14 Length = 155 Back     alignment and structure
 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 17/166 (10%)

Query: 74  VSNRGFEAGGQN-IPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNI 132
           ++N  F+    N   +N D W I       I     S    R+     + +     GT+ 
Sbjct: 2   INNGTFDEPIVNDQANNPDEWFIWQAGDYGISGARVSDYGVRDG-YAYITI--ADPGTD- 57

Query: 133 CPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASA 192
                +         +G+ +GKTY + F  ++     I V +  ++   T   +  +   
Sbjct: 58  --TWHIQFN----QWIGLYRGKTYTISFKAKADTPRPINVKILQNHDPWTNYFAQTVNLT 111

Query: 193 SDVSNWTRVETLLEAKE-TNPNARL--QLTTSRKGVIWFDQVSAMP 235
           +D   W          +  +   ++  +L       I+FD V+  P
Sbjct: 112 AD---WQTFTFTYTHPDDADEVVQISFELGEGTATTIYFDDVTVSP 154
>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum} Length = 205 Back     alignment and structure
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A* Length = 540 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
1cx1_A153 Endoglucanase C; cellulose-binding domain, cellool 99.82
1gui_A155 Laminarinase 16A; carbohydrate binding module, CBM 99.82
1gu3_A149 Endoglucanase C; carbohydrate-binding module, carb 99.68
3p6b_A205 Cellulose 1,4-beta-cellobiosidase; beta-sandwich, 99.66
3k4z_A 289 Glycoside hydrolase family 9; cellulase, CBHA, CBM 99.49
2zex_A147 S-layer associated multidomain endoglucanase; fami 99.12
2zez_A144 Family 16 CBM-2, S-layer associated multidomain en 99.09
1dyo_A160 Endo-1,4-beta-xylanase Y; carbohydrate-binding mod 99.06
2w5f_A 540 Endo-1,4-beta-xylanase Y; cellulosome, glycosidase 99.04
2xom_A152 Arabinogalactan endo-1,4-beta-galactosidase; hydro 98.4
2y6h_A167 Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus m 97.97
2vrq_A 496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 95.35
1uxx_X133 Xylanase U; carbohydrate binding module, CBM6, xyl 95.07
1od3_A168 Putative xylanase; hydrolase, carbohydrate binding 95.06
1uy4_A145 Endo-1,4-beta-xylanase A; carbohydrate-binding mod 95.05
2c7f_A 513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 94.85
2y2w_A 574 Arabinofuranosidase; hydrolase, arabinoxylan, glyc 94.25
2zxq_A 1376 Endo-alpha-N-acetylgalactosaminidase; broken TIM b 94.17
1w9s_A142 BH0236 protein, BHCBM6; carbohydrate-binding modul 94.12
1qw9_A 502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 94.11
1wmx_A205 COG3291: FOG: PKD repeat; CBM30, carbohydrate bind 94.04
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 93.5
3ug3_A 504 Alpha-L-arabinofuranosidase; TIM barrel, hydrolase 93.44
3ecq_A 1531 Protein SPR0328, endo-alpha-N-acetylgalactosaminid 93.41
3see_A222 Hypothetical sugar binding protein; galactose-bind 93.21
2v4v_A129 GH59 galactosidase; hydrolase, family 6 carbohydra 92.99
3c7f_A487 Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- 92.52
2q1f_A 1022 Chondroitinase; alpha plus beta, lyase; 2.85A {Bac 89.76
2c9a_A259 Receptor-type tyrosine-protein phosphatase MU; gly 89.23
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 88.11
2e4t_A 519 Endoglucanase, xyloglucanase; TIM barrel, TIM-like 87.92
2vtf_A626 Endo-beta-N-acetylglucosaminidase; hydrolase, fami 84.24
2w3j_A145 Carbohydrate binding module; sugar-binding protein 83.87
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 82.71
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 82.28
3ii1_A 535 Cellulase; CELM2, glucanase-xyanase, glucanase, xy 81.31
>1cx1_A Endoglucanase C; cellulose-binding domain, cellooligosacharides, cellulase, protein- carbohydrate interaction, hydrolase; NMR {Cellulomonas fimi} SCOP: b.18.1.14 Back     alignment and structure
Probab=99.82  E-value=8.4e-20  Score=149.38  Aligned_cols=135  Identities=15%  Similarity=0.226  Sum_probs=98.9

Q ss_pred             hhhhcCCCcccCCCCCCCCCCCceEecCCeeEEEecCCCCcccCCcceEEEEEecCCCCccccCCCceEEEccCccceec
Q 026000           71 AELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGI  150 (245)
Q Consensus        71 AELi~NRsFE~~~~~~~~~~~~W~~~g~~~~~~~~~~~~~~~~~n~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi~v  150 (245)
                      +|||+||+||.+       +.+|...+... +.+        +  ..+++|++.+..       ...-. .|.||+||+|
T Consensus         7 ~eli~Ng~Fe~~-------~~~W~~~~~~~-~~~--------~--~g~~~v~v~~~g-------~~~w~-vq~~~~gi~l   60 (153)
T 1cx1_A            7 VELLPHTSFAES-------LGPWSLYGTSE-PVF--------A--DGRMCVDLPGGQ-------GNPWD-AGLVYNGVPV   60 (153)
T ss_dssp             CCSSSCCCTTTC-------CTTCEEESSSC-CEE--------C--SSCEEEECCSCC-------SCSTT-SEEEECCCCB
T ss_pred             CcEEeCCCcCCC-------CCCCEEEeeee-EEE--------e--CCEEEEEECCCC-------CCCcc-EEEEeCCEEe
Confidence            799999999963       68999876331 111        1  247888887431       11111 2466799999


Q ss_pred             ccCCEEEEEEEEEeCCCeeEEEEEEeCCCC-eeEEEE-EEEeeecCCCCcEEEEEEEEecCCCCcc-----eEEEEeCC-
Q 026000          151 KQGKTYKVVFYIRSLGSVNILVSLTSSNGL-QTLATS-NIIASASDVSNWTRVETLLEAKETNPNA-----RLQLTTSR-  222 (245)
Q Consensus       151 ~~G~tY~~Sf~ar~~~~~~vtV~L~~~~g~-~~lAs~-~i~v~~~~~~~W~ky~~~Lta~~t~~~a-----~L~I~~~~-  222 (245)
                      ++|++|++||+||++...++.|.+....+. ..+... .+.+    +.+|++|+++|+++.+.+++     ||+|.+.+ 
T Consensus        61 ~~G~~Y~lsf~a~as~~~~i~v~i~~~~~~~~~~~~~~~~~~----t~~w~~~~~~ft~~~~~~~~~~~~~rl~f~lg~~  136 (153)
T 1cx1_A           61 GEGESYVLSFTASATPDMPVRVLVGEGGGAYRTAFEQGSAPL----TGEPATREYAFTSNLTFPPDGDAPGQVAFHLGKA  136 (153)
T ss_dssp             CTTSEEEEEEEEEESSCEEEEEEEECSSSSCCCSSCEEEEEE----CSCCEEEEEEEECCSCBCSSSSCCCEEEEECCCT
T ss_pred             cCCCEEEEEEEEEeCCCceEEEEEeCCCCCchhhcccccEEe----cCCCEEEEEEEEcCCCCCcccccccEEEEECCCC
Confidence            999999999999998766777776654321 233333 5555    58999999999999877776     99999876 


Q ss_pred             -CeEEEEeEEeecC
Q 026000          223 -KGVIWFDQVSAMP  235 (245)
Q Consensus       223 -~G~v~lD~VSLfP  235 (245)
                       .|+|+||+|||+-
T Consensus       137 ~~~~v~iD~VsL~~  150 (153)
T 1cx1_A          137 GAYEFCISQVSLTT  150 (153)
T ss_dssp             TCCEEEEEEEEEEC
T ss_pred             cCCEEEEEeEEEEe
Confidence             7999999999994
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14 Back     alignment and structure
>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A Back     alignment and structure
>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum} Back     alignment and structure
>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150} Back     alignment and structure
>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A* Back     alignment and structure
>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid} Back     alignment and structure
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A Back     alignment and structure
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A* Back     alignment and structure
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A* Back     alignment and structure
>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A Back     alignment and structure
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Back     alignment and structure
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A* Back     alignment and structure
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module, beta-sandwich, laminaribiose; HET: BGC; 1.0A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A* 1o8s_A* 1o8p_A Back     alignment and structure
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A* Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Back     alignment and structure
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Back     alignment and structure
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Back     alignment and structure
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A* Back     alignment and structure
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Back     alignment and structure
>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Back     alignment and structure
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae} Back     alignment and structure
>3see_A Hypothetical sugar binding protein; galactose-binding domain-like, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding module, CCCBM6; HET: XYP; 1.50A {Clostridium cellulolyticum} Back     alignment and structure
>3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* Back     alignment and structure
>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein, hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL; 2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25 Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure
>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A* Back     alignment and structure
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A* Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1guia_155 b.18.1.14 (A:) Carbohydrate binding module from la 1e-10
d1cx1a_153 b.18.1.14 (A:) Cellulose-binding domain of cellula 2e-04
>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]} Length = 155 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 17/166 (10%)

Query: 74  VSNRGFEAGGQN-IPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNI 132
           ++N  F+    N   +N D W I       I     S    R+     + +     GT+ 
Sbjct: 2   INNGTFDEPIVNDQANNPDEWFIWQAGDYGISGARVSDYGVRDG-YAYITI--ADPGTD- 57

Query: 133 CPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASA 192
                +         +G+ +GKTY + F  ++     I V +  ++   T   +  +   
Sbjct: 58  --TWHIQFN----QWIGLYRGKTYTISFKAKADTPRPINVKILQNHDPWTNYFAQTVNLT 111

Query: 193 SDVSNWTRVETLLEAKE-TNPNARL--QLTTSRKGVIWFDQVSAMP 235
           +D   W          +  +   ++  +L       I+FD V+  P
Sbjct: 112 AD---WQTFTFTYTHPDDADEVVQISFELGEGTATTIYFDDVTVSP 154
>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]} Length = 153 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1guia_155 Carbohydrate binding module from laminarinase 16A 99.63
d1cx1a_153 Cellulose-binding domain of cellulase C {Cellulomo 99.48
d1gu3a_142 Cellulose-binding domain of cellulase C {Cellulomo 99.34
d1h6ya_157 Xylan-binding domain {Clostridium thermocellum [Ta 99.2
d1k42a_168 Carbohydrate binding module from a thermostable xy 97.96
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 95.19
d1uy4a_132 Putative xylanase {Clostridium stercorarium [TaxId 95.0
d1uxza_131 Cellulase B (lichenase 5a) {Cellvibrio mixtus [Tax 94.3
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 93.32
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 93.31
d1qw9a2 367 Alpha-L-arabinofuranosidase, catalytic domain {Bac 93.19
d2c9aa2163 Receptor-type tyrosine-protein phosphatase mu {Hum 91.04
d1v0aa1167 Endoglucanase H {Clostridium thermocellum [TaxId: 83.56
>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=7.5e-15  Score=116.26  Aligned_cols=145  Identities=17%  Similarity=0.237  Sum_probs=95.8

Q ss_pred             hcCCCcccCCCC-CCCCCCCceEecCC----eeEEEecCCCCcccCCcceEEEEEecCCCCccccCCCceEEEccCccce
Q 026000           74 VSNRGFEAGGQN-IPSNIDPWAIIGND----SSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGM  148 (245)
Q Consensus        74 i~NRsFE~~~~~-~~~~~~~W~~~g~~----~~~~~~~~~~~~~~~n~~sl~v~v~~~~~~~~~~~~~~~gi~N~Gy~Gi  148 (245)
                      |.|++||....+ .....+.|......    ........     ......++|++....  .   ....+.+.+    +|
T Consensus         2 i~NG~FE~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~i~~~g--~---~~~~~~~~q----~v   67 (155)
T d1guia_           2 INNGTFDEPIVNDQANNPDEWFIWQAGDYGISGARVSDY-----GVRDGYAYITIADPG--T---DTWHIQFNQ----WI   67 (155)
T ss_dssp             CSSTTCSSCCCCCTTTCTTSCEEEEGGGGTSCCCEEEEE-----EEETTEEEEEEEECC--S---SGGGEEEEE----EE
T ss_pred             ccCCCCCCCccCcccCCCCccEEEeCCCccceeeeeecc-----cccCCeEEEEEecCC--C---CccceEEEE----ee
Confidence            789999987432 22346788764211    11111111     111234455554321  0   023345665    89


Q ss_pred             ecccCCEEEEEEEEEeCCCeeEEEEEEeCC-CCeeEEEEEEEeeecCCCCcEEEEEEEEecCC-CCcceEEEEeC--CCe
Q 026000          149 GIKQGKTYKVVFYIRSLGSVNILVSLTSSN-GLQTLATSNIIASASDVSNWTRVETLLEAKET-NPNARLQLTTS--RKG  224 (245)
Q Consensus       149 ~v~~G~tY~~Sf~ar~~~~~~vtV~L~~~~-g~~~lAs~~i~v~~~~~~~W~ky~~~Lta~~t-~~~a~L~I~~~--~~G  224 (245)
                      +|++|++|++|||+|++....+.+.+.... +...+....+.+    +.+|++|+++|++..+ ....||.|.+.  +.|
T Consensus        68 ~l~~g~~Y~lSf~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~----t~~W~~~s~~f~~~~~~~~~~~l~~~~~~~~~~  143 (155)
T d1guia_          68 GLYRGKTYTISFKAKADTPRPINVKILQNHDPWTNYFAQTVNL----TADWQTFTFTYTHPDDADEVVQISFELGEGTAT  143 (155)
T ss_dssp             ECCTTCEEEEEEEEEESSCEEEEEEEECSSTTCCEEEEEEEEE----CSSCEEEEEEEECCTTSCSEEEEEEECCSSCCC
T ss_pred             EecCCCEEEEEEEEEeCCCCcEEEEEEEcCCCCeEEeeeEEee----ccccEEEEEEEEecCCCCccEEEEEEECCCCCc
Confidence            999999999999999988788888877443 335666777766    4799999999998765 35567877764  458


Q ss_pred             EEEEeEEeecCC
Q 026000          225 VIWFDQVSAMPL  236 (245)
Q Consensus       225 ~v~lD~VSLfP~  236 (245)
                      +++||.|||.|+
T Consensus       144 ~~~iDnV~l~~~  155 (155)
T d1guia_         144 TIYFDDVTVSPQ  155 (155)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEC
Confidence            999999999995
>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1gu3a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1k42a_ b.18.1.14 (A:) Carbohydrate binding module from a thermostable xylanase {Rhodothermus marinus [TaxId: 29549]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2c9aa2 b.29.1.25 (A:21-183) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure