Citrus Sinensis ID: 026025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRSSSQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccccHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHccHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHccEcccccEcccccccccHccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDIlgkldavdeEDVISWILKCqdesggfagnighdphVLYTLSAVQVLALFDkvdildadkvSNYIVGLqnedgsfsgdiwgevdTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKnldggfgctpggeshsgqiFCCVGALAIAGALHHVDKDLLGWWLCERQvksgglngrpeklpdvgifsqpnlmmehscrsssq
Flexible Loop (DISEMBL)
mgelaadkhvkyiisvekkkdsfESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKsgglngrpeklpdvgifsqpnlmmehscrsssq
Low Complexity Region (SEG)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRSSSQ
Disordered region (IsUnstruct)
********HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK*********************************
Disordered Region (DISOPRED)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLM***S******
Disordered Region (DISEMBL)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMM*********
Disordered Region (DISPRO)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEH*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRSSSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
P53611	331	Geranylgeranyl transferas	yes	no	0.905	0.667	0.590	3e-81
Q5E9B3	331	Geranylgeranyl transferas	yes	no	0.905	0.667	0.585	2e-80
P53612	339	Geranylgeranyl transferas	yes	no	0.905	0.651	0.590	5e-80
Q08603	331	Geranylgeranyl transferas	yes	no	0.905	0.667	0.585	6e-80
B0G172	339	Probable geranylgeranyl t	yes	no	0.905	0.651	0.612	2e-74
P41992	335	Probable geranylgeranyl t	no	no	0.909	0.662	0.497	5e-64
P46960	311	Geranylgeranyl transferas	yes	no	0.913	0.717	0.504	2e-63
P20133	325	Geranylgeranyl transferas	yes	no	0.909	0.683	0.528	2e-60
O93830	341	Geranylgeranyl transferas	N/A	no	0.889	0.636	0.493	1e-51
O13782	382	Protein farnesyltransfera	no	no	0.877	0.560	0.334	3e-27

>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2

 Score =  301 bits (770), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 131/222 (59%), Positives = 175/222 (78%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+ GLQ EDGSF+GDI
Sbjct: 78  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 0

>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2

 Score =  297 bits (760), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 131/222 (59%), Positives = 172/222 (77%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++ +I  
Sbjct: 26  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKS 85

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 86  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDI 145

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 146 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 205

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 206 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 247

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1

 Score =  296 bits (759), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1

 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/222 (61%), Positives = 169/222 (76%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  DKHV+YI+ +  KKDSFE  V EH+R+NG YWGL++L +L  LD +D+ +VI W+L 
Sbjct: 22  LLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLLS 81

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ  +GGF GN  HD H+L TLSAVQ+L  +D +D +D + V +Y+V LQ EDGSF GD 
Sbjct: 82  CQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQREDGSFVGDQ 141

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGEVDTRFSY AI CLS+L+ LDKIN +KAVEYI+SC+N DGGFG  PG ESH+GQIF C
Sbjct: 142 WGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTC 201

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           VGAL+I   ++ +D D LGWWL ERQ+ +GGLNGRPEK  DV
Sbjct: 202 VGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDV 243

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2

 Score =  244 bits (623), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 111/223 (49%), Positives = 154/223 (69%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
           EL  D H  +I   EK K+S+  ++ EHLR++G YW +  +D+  +L+ +  E++++++L
Sbjct: 23  ELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVL 82

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            C++  GG+    GHD H+L+TL AVQ L +F+ ++  DAD +S Y+ GLQ EDGSF GD
Sbjct: 83  GCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGD 142

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           + GEVDTRF+  ++    +L RL  +N+D AV +++ C N DGGFG  PG ESHSGQI+C
Sbjct: 143 LSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYC 202

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           CVGALAIAG L  +D+D    WL  RQ  SGGLNGRPEKLPDV
Sbjct: 203 CVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDV 245

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 152/224 (67%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           M  L  DKH+ Y+  +  + D  +  + EHL ++  YW   +  +L K D +D+E ++S+
Sbjct: 1   MAVLLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSF 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +L C  ESGGFA   GHD H+  T+ AVQVLA+ D + ++D DKV++YI+GLQNEDGS  
Sbjct: 61  LLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMK 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGE+D RF Y  I CL+IL +LD +N + AV++++ C N DGGFG  PG ESH   +
Sbjct: 121 GDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMV 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224
           F CV AL I   L  +D++LLGWW+ ERQVK GGLNGRPEKLPD
Sbjct: 181 FTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPD 224

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/229 (52%), Positives = 154/229 (67%), Gaps = 7/229 (3%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH++YI S++ KK +FE  + EHLRLNG YWGLT L +L   +   +E+VIS++L 
Sbjct: 7   LLKEKHIRYIESLDTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLS 66

Query: 64  CQDES-GGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK---VSNYIVGLQNEDGSF 119
           C D+  G FA    HD H+L TLSAVQ+LA +D +D+L  D+   + ++I G Q EDGSF
Sbjct: 67  CWDDKYGAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSF 126

Query: 120 SGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQ 179
            GD +GEVDTRF Y A+  LSIL  L    VD AV++++ C N DGGFG  P  ESH+ Q
Sbjct: 127 QGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQ 186

Query: 180 IFCCVGALAIAGALHHVDKDLL---GWWLCERQVKSGGLNGRPEKLPDV 225
            F C+GALAIA  L  +  D L   GWWLCERQ+  GGLNGRP KLPDV
Sbjct: 187 AFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDV 235

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/235 (49%), Positives = 149/235 (63%), Gaps = 18/235 (7%)

Query: 8   KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC-QD 66
           KHV+YI+  E  + SFE  + EHLR+NG YWG+T L  + +L A+ ++DVI +I+ C  D
Sbjct: 17  KHVQYIVEQESHR-SFEYWLSEHLRMNGLYWGVTALITMNELSALAQQDVIDYIMLCWDD 75

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDIL-DADKVSN---------YIVGLQNE 115
           ++G F     HD H+L TLSA+QVL ++D+ + +L D ++ SN         +I GLQ  
Sbjct: 76  KTGAFGSFPKHDGHILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLP 135

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
           DGSF GD +GEVDTRF Y A+  LS+L  L     D A  +I+ C N DGGFG  PG ES
Sbjct: 136 DGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSES 195

Query: 176 HSGQIFCCVGALAIAGALHHVD----KDLLGWWLCERQV-KSGGLNGRPEKLPDV 225
           H+ Q+F CVGALAI   L  +D    K  L  WL ERQV  SGG NGRPEKLPDV
Sbjct: 196 HAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDV 250

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 10/224 (4%)

Query: 8   KHVKYIISVEKKKDSFES--VVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ 65
           KH+KY+    K  D   S   V++  R    YW L++L ILGKLD+   E  IS + + +
Sbjct: 33  KHLKYLT---KMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSSVCERAISSVRQLK 89

Query: 66  DESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNEDGSFSGD 122
             SGGF G  G D H+L T +++  + L D  D   +++ D++ +++  L+N DGSF  +
Sbjct: 90  GPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRVN 149

Query: 123 IWGEVDTRFSYIAICCLSILQ-RLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIF 181
             GE D R  Y A+C  S++   +D    +  ++++  C+  +GG    P  E+H G  F
Sbjct: 150 NEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYTF 209

Query: 182 CCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPD 224
           C + A+A+ G L ++++  L  WL +RQ  +  G +GR  KL D
Sbjct: 210 CALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVD 253

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
224125104	313	predicted protein [Populus trichocarpa]	0.918	0.715	0.857	1e-112
449436108	317	PREDICTED: geranylgeranyl transferase ty	0.918	0.706	0.831	1e-111
225436251	317	PREDICTED: geranylgeranyl transferase ty	0.918	0.706	0.822	1e-110
388518319	283	unknown [Lotus japonicus]	0.922	0.795	0.822	1e-109
255574367	306	geranylgeranyl transferase type II beta	0.918	0.732	0.831	1e-108
34148075	317	putative Rab geranylgeranyl transferase	0.918	0.706	0.817	1e-108
217072034	247	unknown [Medicago truncatula]	0.922	0.910	0.817	1e-108
363806846	317	uncharacterized protein LOC100793642 [Gl	0.918	0.706	0.813	1e-107
225447413	317	PREDICTED: geranylgeranyl transferase ty	0.918	0.706	0.804	1e-107
356512465	320	PREDICTED: geranylgeranyl transferase ty	0.922	0.703	0.784	1e-105

>gi|224125104|ref|XP_002319501.1| predicted protein [Populus trichocarpa] gi|222857877|gb|EEE95424.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/225 (85%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL  DKHVKYI+SVEK+KDSFESVV+EHLR+NGAYWGL TLD+LGKLDA+D  +VI W
Sbjct: 1   MGELVVDKHVKYILSVEKRKDSFESVVLEHLRMNGAYWGLATLDLLGKLDALDSNEVIEW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+KCQ ESGGFAGNIGHDPH+LYTLSAVQVLALFDK+++LDADKV+NYI GLQNEDGSFS
Sbjct: 61  IMKCQHESGGFAGNIGHDPHMLYTLSAVQVLALFDKLNVLDADKVANYISGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVD+RFSY+AICCLSIL RLDKINV+KAV YI SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDEWGEVDSRFSYLAICCLSILHRLDKINVEKAVNYIASCKNVDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436108|ref|XP_004135836.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus] gi|449490992|ref|XP_004158768.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/225 (83%), Positives = 213/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEKKKD F+SVVMEHLR+NGAYWGLT LDILGKLD VD ++V+SW
Sbjct: 1   MGELATEKHVQYILSVEKKKDDFQSVVMEHLRMNGAYWGLTALDILGKLDTVDADEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF+GN+GHDPH+LYTLSAVQVLALFDK+D+LD DKV+NY+VGLQNEDGSFS
Sbjct: 61  VMSCQHESGGFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GDIWGEVD+RFSYIAI CLS+L +LDKINV+KAV ++VSCKN+DGGFGCTPGGESHSGQI
Sbjct: 121 GDIWGEVDSRFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTPGGESHSGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALA+ G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436251|ref|XP_002275861.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera] gi|147860391|emb|CAN82570.1| hypothetical protein VITISV_016117 [Vitis vinifera] gi|296090220|emb|CBI40039.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +G+L  +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKLD VDE+++ISW
Sbjct: 5   IGDLEVEKHVQYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLDMVDEDEIISW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK+++LD DKVSNYI GLQNEDGSFS
Sbjct: 65  VMECQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVLDIDKVSNYIAGLQNEDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE+DTRFSYIAIC LS+LQRLDKINV+KAV YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct: 125 GDMWGEIDTRFSYIAICSLSLLQRLDKINVEKAVNYIVSCKNLDGGFGCTPGAESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCV ALA+ G+LHHVDKDLLGWWLCERQVKSG LNGRPEKLPDV
Sbjct: 185 FCCVSALALTGSLHHVDKDLLGWWLCERQVKSGALNGRPEKLPDV 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518319|gb|AFK47221.1| unknown [Lotus japonicus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL ++KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLT LD+LGKL  VD ++V+SW
Sbjct: 1   MGELVSEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQDESGGFAGN+GHDPH+LYTLSAVQVLALFDK+  +D D+V+NYIV LQNEDGSFS
Sbjct: 61  VMSCQDESGGFAGNVGHDPHILYTLSAVQVLALFDKLYAIDVDRVTNYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVDTRFSYIAICCLSIL+RLDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574367|ref|XP_002528097.1| geranylgeranyl transferase type II beta subunit, putative [Ricinus communis] gi|223532486|gb|EEF34276.1| geranylgeranyl transferase type II beta subunit, putative [Ricinus communis]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/225 (83%), Positives = 207/225 (92%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA DKHV+YIISVEKK DSFE VVMEHLR+NGAYWGL TLD+LGKLD VD  +VI W
Sbjct: 1   MGELAVDKHVEYIISVEKKNDSFEYVVMEHLRMNGAYWGLATLDLLGKLDVVDSSEVIDW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I++CQ ESGGFAGNIGHDPH+LYTLSAVQVLALF+K+++LD DKVSNY+ GLQNEDGSFS
Sbjct: 61  IMQCQHESGGFAGNIGHDPHILYTLSAVQVLALFNKLNVLDIDKVSNYVAGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE DTRFSYI ICCLS+L  LDKINV+KAV YI+SCKN+DGGFG +PGGESH+GQI
Sbjct: 121 GDMWGEADTRFSYIGICCLSLLHCLDKINVEKAVNYILSCKNVDGGFGSSPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34148075|gb|AAQ62584.1| putative Rab geranylgeranyl transferase type II beta subunit [Glycine max]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL +VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHSVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK++++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGEVDTRFSYIAICCLSIL  LDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDMWGEVDTRFSYIAICCLSILHCLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072034|gb|ACJ84377.1| unknown [Medicago truncatula]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 210/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL A+K ++YI+S+EKKKDSFESVVMEHLR+NGAYWGLTTLD+LGKLD VD ++V+SW
Sbjct: 1   MGELVAEKRLRYILSIEKKKDSFESVVMEHLRMNGAYWGLTTLDLLGKLDTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+ C    GGFAGN+GHDPH+LYTLSAVQVLALF+K+ ++DADKV+NYIV LQNEDGSFS
Sbjct: 61  IISCHHHDGGFAGNVGHDPHILYTLSAVQVLALFNKLHLIDADKVTNYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GDIWGEVDTRFSYIAICCLSIL+RLD+INV+ AV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDIWGEVDTRFSYIAICCLSILRRLDRINVENAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806846|ref|NP_001242036.1| uncharacterized protein LOC100793642 [Glycine max] gi|255635594|gb|ACU18147.1| unknown [Glycine max]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/225 (81%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL +VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHSVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK++++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGEVDTRFSYI ICCLSIL  LDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDMWGEVDTRFSYIVICCLSILHCLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447413|ref|XP_002281543.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera] gi|147821440|emb|CAN74579.1| hypothetical protein VITISV_024797 [Vitis vinifera] gi|296081232|emb|CBI17976.3| unnamed protein product [Vitis vinifera]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/225 (80%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +GEL A+KHV+YI+ VEK+KD FESVV EHLR+NGAYWGLTTLD+LGKL+ VD+++V+SW
Sbjct: 5   IGELEAEKHVQYILLVEKRKDDFESVVTEHLRMNGAYWGLTTLDLLGKLEIVDQDEVVSW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GNIGHDPH+++TLSAVQVLALFDK+++LD DK++NYI GLQN DGSFS
Sbjct: 65  VMECQHESGGFGGNIGHDPHIVHTLSAVQVLALFDKLNVLDIDKITNYIAGLQNVDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE+DTRFSYIAICCLS+LQ LDKINV+KAV YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct: 125 GDMWGEIDTRFSYIAICCLSLLQCLDKINVEKAVNYIVSCKNLDGGFGCTPGAESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALA+ G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 185 FCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512465|ref|XP_003524939.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Glycine max]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/232 (78%), Positives = 210/232 (90%), Gaps = 7/232 (3%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL  VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ +SGGF GN+ HDPH+LYTLSAVQVL+LFDK+D++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHDSGGFGGNVEHDPHILYTLSAVQVLSLFDKLDVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEY-------IVSCKNLDGGFGCTPGG 173
           GD+WGEVDTRFSYIAICCLSIL RLDKINV+KAV+Y        +SCKN+DGGFGCTPGG
Sbjct: 121 GDMWGEVDTRFSYIAICCLSILHRLDKINVEKAVKYIIFFFFGFISCKNMDGGFGCTPGG 180

Query: 174 ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           ESH+GQIFCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 ESHAGQIFCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2177058	321	RGTB1 "RAB geranylgeranyl tran	0.922	0.700	0.8	1.1e-101
TAIR|locus:2088614	317	RGTB2 "RAB geranylgeranyl tran	0.913	0.703	0.796	5e-99
UNIPROTKB|P53611	331	RABGGTB "Geranylgeranyl transf	0.909	0.670	0.590	1.3e-77
ZFIN|ZDB-GENE-040426-2116	331	rabggtb "Rab geranylgeranyltra	0.909	0.670	0.594	1.3e-77
UNIPROTKB|F1P6X0	331	RABGGTB "Uncharacterized prote	0.909	0.670	0.585	5.5e-77
UNIPROTKB|G8JKY6	331	RABGGTB "Geranylgeranyl transf	0.909	0.670	0.585	7.1e-77
UNIPROTKB|Q5E9B3	331	RABGGTB "Geranylgeranyl transf	0.909	0.670	0.585	7.1e-77
MGI|MGI:99537	339	Rabggtb "RAB geranylgeranyl tr	0.909	0.654	0.590	1.9e-76
RGD|3530	331	Rabggtb "Rab geranylgeranyltra	0.909	0.670	0.585	2.4e-76
UNIPROTKB|F1LSM6	331	Rabggtb "Geranylgeranyl transf	0.909	0.670	0.585	2.4e-76

TAIR|locus:2177058 RGTB1 "RAB geranylgeranyl transferase beta subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 180/225 (80%), Positives = 205/225 (91%)

Query:     1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             M +L ADKHV+YI+  EKKK+SFESVVM+HLR+NGAYWGLTTLD+L KL  V EE+VISW
Sbjct:     9 MVQLVADKHVRYILMAEKKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISW 68

Query:    61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
             ++ CQ ESGGFAGN GHDPH+LYTLSAVQ+LALFDK++ILD  KVS+Y+  LQNEDGSFS
Sbjct:    69 LMTCQHESGGFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFS 128

Query:   121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
             GD+WGE+DTRFSYIAICCLSIL+ LDKINV+KAV+YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct:   129 GDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQI 188

Query:   181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
             FCCVGALAI G+LHHVDKD LGWWLCERQ+K+GGLNGRPEKL DV
Sbjct:   189 FCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADV 233

GO:0003824 "catalytic activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2088614 RGTB2 "RAB geranylgeranyl transferase beta subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 180/226 (79%), Positives = 205/226 (90%)

Query:     3 ELAADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             +L A KH++YI+++  EKKK+SFESVVM+HLR+NGAYWGLTTL +L KL +V E++V+SW
Sbjct:     4 KLVAGKHLRYILNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSW 63

Query:    61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
             ++ CQ ESGGFAGN GHDPHVLYTLSAVQ+LALFDK++ILD +KVSNYI GLQNEDGSFS
Sbjct:    64 VMTCQHESGGFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFS 123

Query:   121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
             GDIWGEVDTRFSYIAICCLSIL+ LDKINV KAV+YIVSCKNLDGGFGC+PG ESH+GQI
Sbjct:   124 GDIWGEVDTRFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQI 183

Query:   181 FCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDV 225
             FCCVGALAI G LH VDKDLLGWWLCERQ  +SGGLNGRPEKLPDV
Sbjct:   184 FCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDV 229

GO:0003824 "catalytic activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|P53611 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 131/222 (59%), Positives = 175/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+ GLQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=NAS

GO:0007601 "visual perception" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-2116 rabggtb "Rab geranylgeranyltransferase, beta subunit" [Danio rerio (taxid:7955)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 132/222 (59%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  DKH  YI +   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E++I +I  
Sbjct:    18 LFLDKHADYIAAYGSKKDDYEYTLSEYLRMSGIYWGLTVMDLMGQLSRMNREEIIEFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ + GG + +IGHDPH+LYTLSA+Q+L+L+D V+ +D DKV  Y+ GLQ EDGSF+GD 
Sbjct:    78 CQHDCGGISASIGHDPHLLYTLSAIQILSLYDSVNAIDVDKVVEYVKGLQQEDGSFAGDK 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INVDKAVE+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDVINVDKAVEFVMSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G L++ G LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLSVTGQLHQVNADLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1P6X0 RABGGTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|G8JKY6 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|Q5E9B3 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

MGI|MGI:99537 Rabggtb "RAB geranylgeranyl transferase, b subunit" [Mus musculus (taxid:10090)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 131/222 (59%), Positives = 172/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++ +I  
Sbjct:    26 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKS 85

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    86 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDI 145

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   146 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 205

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   206 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 247

GO:0003824 "catalytic activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|3530 Rabggtb "Rab geranylgeranyltransferase, beta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IDA

GO:0018344 "protein geranylgeranylation" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LSM6 Rabggtb "Geranylgeranyl transferase type-2 subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5E9B3	PGTB2_BOVIN	2, ., 5, ., 1, ., 6, 0	0.5855	0.9057	0.6676	yes	no
Q08603	PGTB2_RAT	2, ., 5, ., 1, ., 6, 0	0.5855	0.9057	0.6676	yes	no
P20133	PGTB2_YEAST	2, ., 5, ., 1, ., 6, 0	0.5283	0.9098	0.6830	yes	no
P46960	PGTB2_SCHPO	2, ., 5, ., 1, ., 6, 0	0.5044	0.9139	0.7170	yes	no
B0G172	PGTB2_DICDI	2, ., 5, ., 1, ., 6, 0	0.6126	0.9057	0.6519	yes	no
P53612	PGTB2_MOUSE	2, ., 5, ., 1, ., 6, 0	0.5900	0.9057	0.6519	yes	no
P53611	PGTB2_HUMAN	2, ., 5, ., 1, ., 6, 0	0.5900	0.9057	0.6676	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.60	0.914
3rd Layer	2.5.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XIII000054 hypothetical protein (313 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	1e-170
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	1e-131
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	1e-101
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	8e-82
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	1e-52
cd02893	299	cd02893, FTase, Protein farnesyltransferase (FTase	1e-47
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	2e-43
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	1e-29
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	6e-23
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	6e-22
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	5e-20
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	9e-17
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	3e-14
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	2e-13
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	2e-12
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	6e-12
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	7e-12
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	2e-11
pfam13243	109	pfam13243, Prenyltrans_1, Prenyltransferase-like	1e-10
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	1e-09
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	1e-09
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	3e-09
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	6e-09
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	2e-08
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	6e-07
pfam13243	109	pfam13243, Prenyltrans_1, Prenyltransferase-like	6e-06
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	7e-06
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	2e-05
TIGR01787	621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	6e-05
cd02892	634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	1e-04
cd02889	348	cd02889, SQCY, Squalene cyclase (SQCY) domain; fou	2e-04
COG1689	274	COG1689, COG1689, Uncharacterized protein conserve	2e-04
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	0.001

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score =  472 bits (1217), Expect = e-170
 Identities = 185/225 (82%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL  DKHV+YI S+EKKKDSFESVVMEHLR+NGAYWGLT LD+LGKLD VD ++V+SW
Sbjct: 5   MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GN GHDPH+LYTLSAVQ+LALFD++D+LDADKV++Y+ GLQNEDGSFS
Sbjct: 65  VMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGE+DTRFSY A+CCLS+L+RLDKINV+KAV+YIVSCKN DGGFGCTPGGESH+GQI
Sbjct: 125 GDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 185 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 229

Length = 316

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  371 bits (954), Expect = e-131
 Identities = 142/225 (63%), Positives = 186/225 (82%), Gaps = 3/225 (1%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH++YI+S+ KKKD +E ++ EHLR++G YWGLT LD+LG+L+ ++ E++I ++  
Sbjct: 1   LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKS 60

Query: 64  CQD-ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFS 120
           CQD E GGF G+ GHDPH+L TLSA+Q+LAL+D ++ +D   +K++ +I GLQNEDGSFS
Sbjct: 61  CQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVDTRFSY A+ CL++L +LD I+VDKAV+Y++SC N DGGFGC PG ESH+GQI
Sbjct: 121 GDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  +D+D LGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDV 225

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  294 bits (755), Expect = e-101
 Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 6/224 (2%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ 65
           +KH+KY+    K   S     ++  RL   YW L++LD+LG+ LD  +++++I +I  CQ
Sbjct: 2   EKHIKYLQRCLKLLPS-SYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQ 60

Query: 66  -DESGGFAGNIGHDPHVLYTLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGD 122
            +E GGF G  G DPH+  T +AV  LA+     +  +D +K+  ++  LQN DGSF GD
Sbjct: 61  VNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGD 120

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           + GEVDTRF Y A+  LS+L  L  I+ +K ++YI+SC+N DGGFG  PG ESH G  FC
Sbjct: 121 LGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFC 180

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDV 225
            V +LA+ G L  +DK+ L  WL ERQ+ SG G NGRP KL D 
Sbjct: 181 AVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDT 224

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  248 bits (634), Expect = 8e-82
 Identities = 100/228 (43%), Positives = 138/228 (60%), Gaps = 5/228 (2%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA-VDEEDVISWI 61
           +L  DKH+ Y++            ++E  RLN  YWG  +L +L + D  VD+E  IS++
Sbjct: 25  QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFV 84

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK---VSNYIVGLQNEDGS 118
           L C   SGGF G  G D H+  T+ A+Q LA+ D +D+L       ++++I GL+N DGS
Sbjct: 85  LGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGS 144

Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F  D+ GEVDTRF YIA+  LS+L  LDK   + AV+Y+  C+N +GGFG  P  E+H+G
Sbjct: 145 FRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAG 204

Query: 179 QIFCCVGALAIAGALHHV-DKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
             FC + ALA+ G L  + D + L  WL ERQ+ SGGLNGR  KL D 
Sbjct: 205 YTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDT 252

Length = 342

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score =  171 bits (436), Expect = 1e-52
 Identities = 74/241 (30%), Positives = 108/241 (44%), Gaps = 24/241 (9%)

Query: 6   ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDE------EDVIS 59
            +KH+KY++             +   +     W L  L +L     + +      E  I 
Sbjct: 1   IEKHLKYLLRYPYGDGH-WYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQ 59

Query: 60  WILKCQDESGGFAGNIGHD-PHVLYTLSAVQVLALFDKVDILDAD---KVSNYIVGLQNE 115
            +L  Q   GGF+G  G+D P +  T  A++ L L      +D     +  N+++ LQNE
Sbjct: 60  RLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNE 119

Query: 116 DGSFSGDIWG-------EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGF 167
           DG F  D  G       E D R +  A+  L++L +L     ++KA++Y++SC+N DGGF
Sbjct: 120 DGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF 179

Query: 168 GCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPE---KLPD 224
           G  PGGESH     C   ALA+ G L   D      WL  RQ   GG     +   KL D
Sbjct: 180 G--PGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237

Query: 225 V 225
            
Sbjct: 238 S 238

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  158 bits (403), Expect = 1e-47
 Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 7   DKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKC 64
           +KH+KY+  S+ +   SF S+      L   YW L +L++LG+ LD    +DVIS++ +C
Sbjct: 2   EKHIKYLKKSLRQLPSSFTSLDASRPWL--LYWILHSLELLGEELDQSYADDVISFLRRC 59

Query: 65  QDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA---DKVSNYIVGLQNEDGSFSG 121
           Q+ SGGF G  G  PH+  T +AV  LA+    +  D    + +  +++ L+  DGSF  
Sbjct: 60  QNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRM 119

Query: 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIF 181
            + GEVD R +Y AI   S+L  L     +   EYI+SC+  +GGFG  PG E+H G  F
Sbjct: 120 HVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTF 179

Query: 182 CCVGALAIAGALHHVDKD-LLGWWLCERQVKSGGLNGRPEKLPD 224
           C + ALAI G    +D + LL W +  +    GG  GR  KL D
Sbjct: 180 CALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVD 223

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis. Length = 299

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  148 bits (375), Expect = 2e-43
 Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 29/245 (11%)

Query: 7   DKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEED---VISWIL 62
            KHVK+    ++    S++S+    L +  A++ L+ LD+LG LD++  E+   +I WI 
Sbjct: 2   KKHVKFFQRCLQLLPSSYQSLDTNRLTI--AFFALSGLDLLGALDSILVEEKDDIIEWIY 59

Query: 63  KCQ----DESGGFAG---------NIGHD-PHVLYTLSAVQVLA-LFDKVDILDADKVSN 107
             Q       GGF G            +D  ++  T  A+  L  L D +  +D   + N
Sbjct: 60  SLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILN 119

Query: 108 YIVGLQNEDGSFSGDIW---GEVDTRFSYIAICCLSILQRLDK--INVDKAVEYIVSCKN 162
           ++  LQ  DGSF   +    GE D RF Y A+    +L    +  I+ +K ++YI S ++
Sbjct: 120 FLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQS 179

Query: 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD---KDLLGWWLCERQVKSGGLNGRP 219
            DGGFG  PG ESH G  FC + +L++ G L  +     + L  WL  RQV   G NGRP
Sbjct: 180 YDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRP 239

Query: 220 EKLPD 224
            K  D
Sbjct: 240 NKPAD 244

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score =  114 bits (287), Expect = 1e-29
 Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 1   MGELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVI 58
           M EL  +KH++Y+    ++   SF   V++  R    YW L ++ +LG+ LD   E D I
Sbjct: 41  MLELWREKHLEYLTRGLRQLGPSFS--VLDANRPWLCYWILHSIALLGESLDDELENDTI 98

Query: 59  SWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNE 115
            ++ +CQD +GG+ G  G  PH+  T +AV  L        L   + +K+  +++ +++ 
Sbjct: 99  DFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDP 158

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
            G F     GE+D R  Y AI   S+L  LD   V    +YI+SC+  +GG G  PG E+
Sbjct: 159 SGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEA 218

Query: 176 HSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224
           H G  FC + A+ +   +  +D   L  W+  RQ   GG  GR  KL D
Sbjct: 219 HGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVD 267

Length = 439

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 89.3 bits (222), Expect = 6e-23
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 58  ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDG 117
           + ++L  Q+  GG+   +G    V  T  A+  LA     +  D  K   +++  QN DG
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALG--ETPDVKKALAWLLSQQNPDG 58

Query: 118 SFSGD-IWGEVDTRFSYIAICCLSIL-QRLDKINVDKAVEYIVSCKNLDGGFG 168
            F  D      D   +  A+  L +L    D   V+KAV+Y++SC+N DGGFG
Sbjct: 59  GFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111

Length = 112

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 91.1 bits (227), Expect = 6e-22
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG 69
            K++ S++    SF   +   +     Y  L+ L +L  L  +D+E +I +IL CQ+  G
Sbjct: 104 YKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDG 163

Query: 70  GFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWGEVD 128
           GF G  G + H  YT  AV  LAL  ++D++D +++  ++V  Q    G F+G     VD
Sbjct: 164 GFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVD 223

Query: 129 TRFSYIAICCLSILQRLDKINVDKAVEYI-VSCKNLDGGFGCTPGGES---HSGQIFCCV 184
           T +S+     L IL RL  I+ +K  EYI    ++  GGF   PG      H+   +  +
Sbjct: 224 TCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHT---YYGL 280

Query: 185 GALAIA 190
             L++ 
Sbjct: 281 SGLSLL 286

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 86.2 bits (214), Expect = 5e-20
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 21/178 (11%)

Query: 6   ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWG----------LTTLDILGKLDAVDEE 55
            +K  K+I  ++ +  SF          +G  WG          +  L +LGKLD +D +
Sbjct: 102 KEKIAKFIKGLQNEDGSF----------SGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVD 151

Query: 56  DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNE 115
             + ++L C +  GGF    G + H       V  LA+   +D++D D++  ++   Q  
Sbjct: 152 KAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLP 211

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNL-DGGFGCTPG 172
            G  +G      D  +S+  +  L I+ RL  IN +K   +I++C++  DGGF   PG
Sbjct: 212 SGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPG 269

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 77.8 bits (192), Expect = 9e-17
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 2/182 (1%)

Query: 12  YIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGF 71
           +I  ++    SF S +   +     Y  L+ L +LG LD    E  + ++ KCQ+  GGF
Sbjct: 134 FISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGF 193

Query: 72  AGNIGHDPHVLYTLSAVQVLALFDKVDIL-DADKVSNYIVGLQNEDGSFSGDIWGEVDTR 130
                 + H  YT  A+  LAL  K+D L D +K+  ++   Q   G  +G     VDT 
Sbjct: 194 GLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTC 253

Query: 131 FSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPGGESHSGQIFCCVGALAI 189
           +S+  +  L+IL +LD IN ++  +YI+ C+    GGF   PG E         +  L++
Sbjct: 254 YSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSL 313

Query: 190 AG 191
             
Sbjct: 314 IE 315

Length = 342

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 14/171 (8%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGA-------YWGLTTLDILGKLDA-VDEEDVISWI 61
           + +++S++ +   F      + R+ G         + L  L +LGKLD     E  + ++
Sbjct: 110 LNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYL 169

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG 121
           L CQ+  GGF    G + H   T  A   LAL   +D  DA K   +++  Q  DG +  
Sbjct: 170 LSCQNYDGGFGP--GGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGE 227

Query: 122 DIWGEVDT-RFSYIAICCLSIL---QRLDKINVDKAVEYIVSCKNLDGGFG 168
                       Y      ++L   +  D  + +K V++++S +N DGGF 
Sbjct: 228 GRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFS 278

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 40/166 (24%), Positives = 77/166 (46%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +  L ADK   Y+  ++ +  SF       +    +Y  L  L +L +LD ++ E  + +
Sbjct: 101 LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDY 160

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+ C++  GGF    G + H       V  LA+   +  +D D +  ++   Q + G  +
Sbjct: 161 IVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLN 220

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG 166
           G      D  +S+  +  L I+ R+  I+ DK  ++I+ C++ + G
Sbjct: 221 GRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENG 266

Length = 316

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 59.9 bits (146), Expect = 2e-12
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191
           I+ +K V+Y++SC+N DGGFG  PGGES +   +C + ALA+ G
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG 166
           +Y++  QN DG +   + G  D   + +A+  L+ L   +  +V KA+ +++S +N DGG
Sbjct: 2   DYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALG--ETPDVKKALAWLLSQQNPDGG 59

Query: 167 FGCTPGGESHS-GQIFCCVGALAIAGALHHVD--KDLLGWWLCERQVKSGG 214
           FG  P   S         + AL + G     +  +  +  +L   Q   GG
Sbjct: 60  FGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAV-DYLLSCQNPDGG 109

Length = 112

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 63.5 bits (155), Expect = 7e-12
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 52  VDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVS---NY 108
           +D+E +I +I   Q   GGF    G + H   T  A+  L+L  K++ L    +     +
Sbjct: 165 IDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRW 224

Query: 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGF 167
           +V  Q     F+G      DT +S+     L +L     I+ +K   Y++S +  L GGF
Sbjct: 225 LVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGF 284

Query: 168 GCTPGG 173
              P  
Sbjct: 285 AKNPDS 290

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG 69
           V Y++S +     + + V     +      L  L  LG+   V +   ++W+L  Q+  G
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVKK--ALAWLLSQQNPDG 58

Query: 70  GFAGN-IGHDPHVLYTLSAVQVL-ALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           GF  +   + P +  T  A+  L  L  + D    +K  +Y++  QN DG F 
Sbjct: 59  GFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111

Length = 112

>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 55  EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA-DKVSNYIVGLQ 113
           E  + +IL  Q+  G ++ + G D  V  T +  + LAL     +L+A  K   +++  Q
Sbjct: 2   ERAVEYILNTQNPDGSWSYSSGGDVSV--TAALARALALAGDARVLEAIKKAVEWLLDQQ 59

Query: 114 NEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159
            EDG F  D      +  +YI    +  +   D   +++ VE+I+ 
Sbjct: 60  QEDGGFGYDGGEYAYSTATYIVALLIYGIAG-DDEKLERGVEWILK 104

Length = 109

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 52.5 bits (127), Expect = 1e-09
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 101 DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143
           D +K+ +Y++  QN DG F G   GE DT ++Y A+  L++L 
Sbjct: 2   DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFD 95
          D+E ++ ++L CQ+  GGF G  G +    YT  A+  LAL  
Sbjct: 2  DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGN---IGHDPHVLYTLSAVQVL 91
           G       L +LG LD+ D +  + W+L  Q   GG+              YT  A   L
Sbjct: 189 GTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYAL 248

Query: 92  ALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142
               K+ D+ DA+K+  +++  QNEDG FS       DT+ +  A+  LS+ 
Sbjct: 249 LALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSLY 300

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score = 55.2 bits (133), Expect = 6e-09
 Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 16/204 (7%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF 94
             Y  ++   +L  LD    + V  +IL CQ   GG  G  G + H  YT   +  + L 
Sbjct: 174 ACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILI 233

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKI---NVD 151
           ++VD LD   + N++V  Q  +G F G     VD  +S+      ++LQ+L  I    + 
Sbjct: 234 NEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQ 293

Query: 152 KAVEYI-----------VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDL 200
                I            S    D          S  G  F       + G L H    L
Sbjct: 294 TGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQM-GPLFH-SIAL 351

Query: 201 LGWWLCERQVKSGGLNGRPEKLPD 224
             + L   QV  GGL  +P K  D
Sbjct: 352 QQYILLCSQVLDGGLRDKPGKSRD 375

Length = 439

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG 213
           V+Y++S +N DGG+G   GG S        + ALA  G    V K L   WL  +Q   G
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVKKAL--AWLLSQQNPDG 58

Query: 214 GLNGRPEKLPD 224
           G    P+    
Sbjct: 59  GFGYDPQSNSP 69

Length = 112

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQDE-SGGFAGNIGHDPHVLYTLSAVQVLALF 94
           ++W L++L ILGKLD ++ E++  +IL CQ E SGGF+   G +P V +T   +  L+L 
Sbjct: 255 SFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLI 314

Query: 95  DKVDILDAD 103
           +   +   D
Sbjct: 315 EYKYLNPVD 323

Length = 342

>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD----KAVEYIVSCKN 162
            YI+  QN DGS+S    G+V      +       L       V     KAVE+++  + 
Sbjct: 6   EYILNTQNPDGSWSYSSGGDV-----SVTAALARALALAGDARVLEAIKKAVEWLLDQQQ 60

Query: 163 LDGGFGCTPG 172
            DGGFG   G
Sbjct: 61  EDGGFGYDGG 70

Length = 109

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 37  YWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           +W L++L I+G+L  +++  + ++IL CQD E GGFA   G+   V +T   +  L+L 
Sbjct: 229 WWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 37  YWGLTTLDILGKLDAVDEEDV---ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLAL 93
           +  + +L +LGKL+ + E+ +     W++  Q    GF G         Y+      L L
Sbjct: 198 FCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKL 257

Query: 94  FDKVDILDADKVSNYIVGLQNED-GSFSGDIWGEVDTRFSYIAICCLSIL 142
            D   ++D +K  NY++  Q    G F+ +     D   SY+ +  LS++
Sbjct: 258 LDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 35/143 (24%)

Query: 56  DVISWILKCQDESGGFA--------------------GNIGHDP-HVLYTLSAVQVLALF 94
           D ++WIL  Q  +GGFA                    G+I  DP +V  T   +Q L  F
Sbjct: 392 DAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAF 451

Query: 95  DKVDILDADKVSN----YIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKI-- 148
                 +   V      Y+   Q  DGS+ G  WG     ++Y     LS L    +   
Sbjct: 452 -GHRADEIRNVLERALEYLRREQRADGSWFGR-WG---VNYTYGTGFVLSALAAAGRTYR 506

Query: 149 ---NVDKAVEYIVSCKNLDGGFG 168
               V KA ++++S +  DGG+G
Sbjct: 507 NCPEVQKACDWLLSRQMPDGGWG 529

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene , lanosterol , cycloartenol, amyrin, lupeol and isomultiflorenol. Length = 621

>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 46/171 (26%)

Query: 39  GLTTLDILGKLDAVDEE-------DVISWILKCQDESGGFA------------------- 72
            L  L  L +L    E+       D + W+L  Q+ +GGFA                   
Sbjct: 380 ALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFED 439

Query: 73  -GNIGHDP-HVLYTLSAVQVLALFDKVDILDADKVSN-------YIVGLQNEDGSFSGDI 123
            G+I  DP +V  T S ++ L LF K+      ++         Y++  Q  DGS+ G  
Sbjct: 440 FGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGR- 498

Query: 124 WGEVDTRFSY---IAICCLSILQRLDKIN---VDKAVEYIVSCKNLDGGFG 168
           WG     + Y    A+  L+     D  N   + KA ++++S +N DGG+G
Sbjct: 499 WG---VCYIYGTWFALEALAA-AGEDYENSPYIRKACDFLLSKQNPDGGWG 545

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. Length = 634

>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 41/167 (24%)

Query: 39  GLTTLDILGKLDAVDEE-------DVISWILKCQDESGGFA------------------G 73
            L  L  L K     ++       D + W+L  Q+ +GGFA                  G
Sbjct: 97  ALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDG 156

Query: 74  NIGHD-PHVLYTLSAVQVLALFDKVDILDADKVSN-------YIVGLQNEDGSFSGDIWG 125
           +I  D P+V  T S ++ L LF K+      ++         Y+   Q  DGS+ G  WG
Sbjct: 157 DIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGR-WG 215

Query: 126 EVDTRFSY---IAICCLSIL-QRLDKINVDKAVEYIVSCKNLDGGFG 168
                F Y    A+  L+   +  +   V KA ++++S +N DGG+G
Sbjct: 216 ---VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWG 259

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain. Length = 348

>gnl|CDD|224603 COG1689, COG1689, Uncharacterized protein conserved in archaea [Function unknown]

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 13  IISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFA 72
           +I   ++    ++  + H      Y  L TL   G  +     +V  + L C D  GGF 
Sbjct: 148 VIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGPKE-----EVRHFELCCGDW-GGFT 201

Query: 73  GN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDT-R 130
                + P++  T  A++ L L      +       +I  LQN++G F       + T  
Sbjct: 202 EVPNSYPPYIEPTFYALRGLELLGGKYCISD--HIRFIRSLQNQNGGFRRSYELGISTFE 259

Query: 131 FSYIAICCLSILQR 144
            +Y A+  L+ L R
Sbjct: 260 NTYRALASLASLHR 273

Length = 274

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 43  LDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA 102
           L I G L  VD++ +  W+ + Q +SGG  G     P V Y+   +  L + D+V  +D 
Sbjct: 191 LAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDK 250

Query: 103 DKVSNYIVGLQN-EDGSFSGDIWGEVDTRFSYIAICCLSIL 142
           DK++ +I+  Q+ E+G  S      VD   ++  +  LS+L
Sbjct: 251 DKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLL 291

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
KOG0366	329	consensus Protein geranylgeranyltransferase type I	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
KOG0366	329	consensus Protein geranylgeranyltransferase type I	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	100.0
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	100.0
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.98
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.96
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.95
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.95
PLN02993	763	lupeol synthase	99.94
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.93
PLN03012	759	Camelliol C synthase	99.93
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.92
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.92
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.91
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.89
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.87
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.85
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.84
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.84
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.83
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.79
PLN02993	763	lupeol synthase	99.78
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.77
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.76
PLN03012	759	Camelliol C synthase	99.72
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.59
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.56
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.49
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.45
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.43
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.4
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.38
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.28
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.27
PF07678	246	A2M_comp: A-macroglobulin complement component; In	99.22
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	99.15
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.12
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.06
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.58
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	98.49
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	98.02
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	97.62
PLN02279	784	ent-kaur-16-ene synthase	97.47
PLN02592	800	ent-copalyl diphosphate synthase	97.4
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	97.26
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	96.37
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	96.03
PLN02592	800	ent-copalyl diphosphate synthase	95.86
PLN02279	784	ent-kaur-16-ene synthase	94.87
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	93.65
PF05817	636	Ribophorin_II: Oligosaccharyltransferase subunit R	92.5
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	90.36
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	89.83

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=1.8e-59  Score=408.04  Aligned_cols=240  Identities=78%  Similarity=1.345  Sum_probs=227.7

Q ss_pred             CccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025            1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (244)
Q Consensus         1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (244)
                      |.++.+++|++||+++++.+++|.+...++++++.+||++.+|++|+.....+++++++||++||+++|||++.+++++|
T Consensus         5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h   84 (316)
T PLN03201          5 MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPH   84 (316)
T ss_pred             hhhccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCccc
Confidence            56899999999999999999999877778899999999999999999876778999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~  160 (244)
                      +.+||+|+++|.++++.+.+|++++++||.++|++||||.++++++.|+++||||++++.+++.++.++++++++||++|
T Consensus        85 ~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~sc  164 (316)
T PLN03201         85 ILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSC  164 (316)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence            99999999999999888889999999999999999999999999999999999999999999987778999999999999


Q ss_pred             CCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       161 Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      |++||||+.+|++|+|+++||||+++|.+++..+.+|.+++++||++||..+|||+|||||.+|+|||||.+..|..+.+
T Consensus       165 q~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~  244 (316)
T PLN03201        165 KNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDR  244 (316)
T ss_pred             cCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999888899999999999998899999999999999999999988877643

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=9.5e-59  Score=412.91  Aligned_cols=237  Identities=30%  Similarity=0.495  Sum_probs=221.2

Q ss_pred             ccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (244)
Q Consensus         2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (244)
                      -+|.+++|++|++++..+ -+..+...|.+++|.+||++.+|++||.. .+++++++++||.+||+++|||++.|++++|
T Consensus        42 ~~l~~~~H~~yl~~~l~~-lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~h  120 (439)
T PLN02710         42 LELWREKHLEYLTRGLRQ-LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPH  120 (439)
T ss_pred             ccccHHHHHHHHHHHhhc-CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCcc
Confidence            468999999999987664 55567777899999999999999999983 4557899999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhcC---CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHH
Q 026025           81 VLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI  157 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i  157 (244)
                      +..||+|+.+|.++++   ++.+|++++++||.++|++||||.+.+++|+|+++||||++++.+++.++..+++++++||
T Consensus       121 l~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I  200 (439)
T PLN02710        121 LATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYI  200 (439)
T ss_pred             HHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHH
Confidence            9999999999999985   5678999999999999999999999999999999999999999999988888899999999


Q ss_pred             HhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhh
Q 026025          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEH  237 (244)
Q Consensus       158 ~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~  237 (244)
                      ++||++||||+..|+.|+|+++||||+++|.+|+..+.+|.+++++||++||..+|||+|||||.+|+|||||.+.+|..
T Consensus       201 ~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~l  280 (439)
T PLN02710        201 LSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL  280 (439)
T ss_pred             HHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHH
Confidence            99999999999999999999999999999999999888999999999999999999999999999999999998888776


Q ss_pred             hh
Q 026025          238 SC  239 (244)
Q Consensus       238 ~~  239 (244)
                      +.
T Consensus       281 L~  282 (439)
T PLN02710        281 LQ  282 (439)
T ss_pred             HH
Confidence            64

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-58  Score=374.11  Aligned_cols=236  Identities=66%  Similarity=1.181  Sum_probs=227.5

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (244)
                      +|.++||++||++.-.+..+|.++..++-+++++||.+.+|++++.....++++++.|+++||+++|||++.||++||+.
T Consensus        17 ~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll   96 (329)
T KOG0366|consen   17 ELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLL   96 (329)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHH
Confidence            57889999999998888888999999999999999999999999998777899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (244)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~  162 (244)
                      +|++|+++|++.+.++.+|++++..|+..+|++||+|.+.-.+|.|+|++|||+++|++|+.++.+++|++++|+++|-|
T Consensus        97 ~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN  176 (329)
T KOG0366|consen   97 YTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYN  176 (329)
T ss_pred             HHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhh
Q 026025          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       163 ~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~  238 (244)
                      -||||+.+||.|||++..||++++|+++++++.+|.+.+-+||..||.+.||.+|||.|.||+|||||+|.-|..+
T Consensus       177 ~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~ii  252 (329)
T KOG0366|consen  177 FDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAII  252 (329)
T ss_pred             cCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998877543

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.5e-55  Score=381.15  Aligned_cols=232  Identities=37%  Similarity=0.633  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhh
Q 026025            6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY   83 (244)
Q Consensus         6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~llg~-~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~   83 (244)
                      +++|++|++++.. .+++|.  ..+.++++.+||++.+|++|+. ...+.++++++||++||++||||++.++.++|+.+
T Consensus         1 ~~~h~~~~~~~l~~~p~~~~--~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~   78 (299)
T cd02893           1 REKHIKYLKKSLRQLPSSFT--SLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT   78 (299)
T ss_pred             ChHHHHHHHHHhhcCCcccc--ccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence            5899999999877 445544  4478899999999999999997 34456899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC---CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025           84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (244)
Q Consensus        84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~  160 (244)
                      ||+|+++|.+++.   .+.+|++++++||.++|++||||...+.+|+|+++||||++++.+++.+++.+++++++||++|
T Consensus        79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c  158 (299)
T cd02893          79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC  158 (299)
T ss_pred             HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence            9999999999986   4567899999999999999999999999999999999999999999988778899999999999


Q ss_pred             CCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccccc-CccccCCCCCCCCccccchhhHhhhhhh
Q 026025          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       161 Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      |++||||+..|+.|+|+++||||+++|.+++..+.++.+++++||++||.+ +|||+|||+|.+|+|||||.+..|..+.
T Consensus       159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~  238 (299)
T cd02893         159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILE  238 (299)
T ss_pred             CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998889999999999999966 9999999999999999999988887664

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=2.5e-55  Score=378.61  Aligned_cols=236  Identities=60%  Similarity=1.126  Sum_probs=222.3

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcc-cCCCCcCCCCCCCCchh
Q 026025            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVL   82 (244)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~   82 (244)
                      |++++|++|++++.+...++.+...|.++++.+||++++|++|+.....+++++++||++|| +++|||++.+++++|+.
T Consensus         1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~   80 (287)
T cd02894           1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHIL   80 (287)
T ss_pred             CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Confidence            57899999999999976677888889999999999999999999876668999999999999 78999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCccC--HHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025           83 YTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (244)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~--~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~  160 (244)
                      +||+|+.+|.+++.++.++  ++++++||.++|++||||.+.+.+++|+++||||++++.+++..+.++++++++||++|
T Consensus        81 ~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~  160 (287)
T cd02894          81 STLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC  160 (287)
T ss_pred             HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence            9999999999988767777  89999999999999999999999999999999999999999987788999999999999


Q ss_pred             CCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhh
Q 026025          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       161 Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      |++||||+.+|++++|+++||||+++|.+++..+.++.+++++||++||.++|||++||+|.+|+||+||++..|..+-
T Consensus       161 q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~  239 (287)
T cd02894         161 YNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIG  239 (287)
T ss_pred             CCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhc
Confidence            9999999999999999999999999999999988899999999999999999999999999999999999999886653

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=6.6e-53  Score=365.74  Aligned_cols=232  Identities=33%  Similarity=0.546  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcc----cCCCCcCCCCC-
Q 026025            6 ADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQ----DESGGFAGNIG-   76 (244)
Q Consensus         6 ~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q----~~dGgf~~~~~-   76 (244)
                      +++|++|++++.++ +.+  +...|.++++.+||++.+|++|+...   .++++++++||.+||    +++|||++.++ 
T Consensus         1 ~~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~   78 (307)
T cd02895           1 KKKHVKFFQRCLQLLPSS--YQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTL   78 (307)
T ss_pred             ChHHHHHHHHHhhhCCch--hhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence            47999999998763 333  45558899999999999999999764   467899999999999    99999999876 


Q ss_pred             ---------CCCchhhHHHHHHHHHHhcC-CCccCHHHHHHHHHhccCCCCCccCCC---CCCCChhhHHHHHHHHHhhc
Q 026025           77 ---------HDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI---WGEVDTRFSYIAICCLSILQ  143 (244)
Q Consensus        77 ---------~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~---~~~~d~~~ty~al~~l~~l~  143 (244)
                               .++|+..||+|+.+|.++++ .+.+|++++++||.++|++||||...+   .+|+|+++||||++++.+++
T Consensus        79 ~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~  158 (307)
T cd02895          79 GLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD  158 (307)
T ss_pred             ccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence                     47999999999999999975 456789999999999999999999987   78999999999999999999


Q ss_pred             cCC--hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC---CCCHHHHHHHHHcccccCccccCC
Q 026025          144 RLD--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---HVDKDLLGWWLCERQVKSGGLNGR  218 (244)
Q Consensus       144 ~~~--~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~---~~~~~~~~~wL~~~Q~~~GGf~~~  218 (244)
                      ..+  .++++++++||++||++||||+..|+.|+|+++||||+++|.+++..+   .++.+++++||++||..+|||++|
T Consensus       159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr  238 (307)
T cd02895         159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR  238 (307)
T ss_pred             CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence            865  578999999999999999999999999999999999999999999875   688999999999999999999999


Q ss_pred             CCCCCCccccchhhHhhhhhh
Q 026025          219 PEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       219 ~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      |+|.+|+||+||.+.+|..+.
T Consensus       239 ~~k~~D~cysfw~~a~L~iL~  259 (307)
T cd02895         239 PNKPADTCYSFWVGASLKLLD  259 (307)
T ss_pred             CCCCCccchhhHHHHHHHHcC
Confidence            999999999999998887663

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-52  Score=353.58  Aligned_cols=232  Identities=29%  Similarity=0.516  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhh
Q 026025            6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY   83 (244)
Q Consensus         6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~   83 (244)
                      +++|.+||.+..+ -+..|.  ..|.++.|.+||.+.+|++|+.. +....+++|+||..||.|.|||++.||+.+|+..
T Consensus        74 r~kH~~YL~~~Lr~Lp~~~~--~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~  151 (423)
T KOG0365|consen   74 RQKHLMYLDKMLRQLPSQYT--CLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAP  151 (423)
T ss_pred             HHHHHHHHHHHHHhCCCccc--ccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhH
Confidence            8999999998644 333444  44799999999999999999964 3446789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcC---CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025           84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (244)
Q Consensus        84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~  160 (244)
                      ||+||.+|.+++.   ++.|+++++..||.+++++||||..+.++|.|+|.+|||+++.+++|...+.-.|.+.+||.+|
T Consensus       152 TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~C  231 (423)
T KOG0365|consen  152 TYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASC  231 (423)
T ss_pred             HHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Confidence            9999999999975   5678999999999999999999999999999999999999999999998777789999999999


Q ss_pred             CCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhhh
Q 026025          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       161 Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      |+.+|||+..|+.|+|++|||||+|+|++|+..+..+.+.+.+|..+|| ..+|||+||.||.+|.|||||...+.-.+.
T Consensus       232 QtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~  311 (423)
T KOG0365|consen  232 QTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQ  311 (423)
T ss_pred             ccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHH
Confidence            9999999999999999999999999999999999999999999999999 589999999999999999999876654443

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=2.4e-51  Score=355.96  Aligned_cols=236  Identities=22%  Similarity=0.309  Sum_probs=219.4

Q ss_pred             cccHHHHHHHHHHcc----cCCCCcccccc----------ccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhcccC
Q 026025            3 ELAADKHVKYIISVE----KKKDSFESVVM----------EHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDE   67 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q----~~dg~~~~~~~----------~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~~q~~   67 (244)
                      ++++++.++||.++|    +++|+|.....          +.++++.||||+.+|.+|+.+ ..++++++++||++||++
T Consensus        48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~  127 (307)
T cd02895          48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP  127 (307)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence            678899999999999    99999976543          579999999999999999864 245899999999999999


Q ss_pred             CCCcCCCC---CCCCchhhHHHHHHHHHHhcCCC--ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhh
Q 026025           68 SGGFAGNI---GHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL  142 (244)
Q Consensus        68 dGgf~~~~---~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l  142 (244)
                      ||||+..+   +.++|+..||+|+.++.+++..+  .+|++++++||.+||++||||+..|+.|+|.++||||+++|.++
T Consensus       128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL  207 (307)
T cd02895         128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLL  207 (307)
T ss_pred             CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHc
Confidence            99999987   78999999999999999998766  57899999999999999999999999999999999999999999


Q ss_pred             ccCC---hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCC
Q 026025          143 QRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGR  218 (244)
Q Consensus       143 ~~~~---~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~  218 (244)
                      +.++   .++.+++++||++||+++|||+.+|++++|++||||++++|.+++..+.+|.+++.+||++|| ..+|||+++
T Consensus       208 ~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~  287 (307)
T cd02895         208 GKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKN  287 (307)
T ss_pred             CCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCC
Confidence            9865   678999999999999999999999999999999999999999999988899999999999988 679999999


Q ss_pred             CCCCCCccccchhhHhhhhh
Q 026025          219 PEKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       219 ~~~~~d~~ys~~~l~~l~~~  238 (244)
                      |++.||.|||||+|..|..+
T Consensus       288 p~~~~D~~ht~~~la~Lsl~  307 (307)
T cd02895         288 PDSHPDPLHSYLGLAALSLI  307 (307)
T ss_pred             CCCCCChhHHHHHHHHHHhC
Confidence            99999999999999998753

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=3e-51  Score=353.29  Aligned_cols=236  Identities=22%  Similarity=0.335  Sum_probs=220.9

Q ss_pred             cccHHHHHHHHHHcc-cCCCCccccccccchHHHHHHHHHHHHhhCCCCCcC--HHHHHHHHHhcccCCCCcCCCCCCCC
Q 026025            3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKCQDESGGFAGNIGHDP   79 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~--~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (244)
                      +++++++++||+++| +++|+|......++++..||.|+.+|.+++....++  ++++++||+++|++||||+..++.++
T Consensus        48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~  127 (287)
T cd02894          48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEV  127 (287)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCc
Confidence            468899999999999 679999877666788999999999999987544445  89999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (244)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~  159 (244)
                      |+..||+|+++|.+++..+.++++++++||.++|++||||++++++++|+++|||++++|.++|..+.++++++++||.+
T Consensus       128 d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~  207 (287)
T cd02894         128 DTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCE  207 (287)
T ss_pred             hHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHH
Confidence            99999999999999988888899999999999999999999999999999999999999999998877899999999999


Q ss_pred             cCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhh
Q 026025          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       160 ~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~  238 (244)
                      ||+++|||+.+|++++|++||||++++|.+++..+.++.+++.+||+++| .++|||+++|++.+|+|||||+|..|..+
T Consensus       208 ~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~  287 (287)
T cd02894         208 RQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL  287 (287)
T ss_pred             hCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence            99999999999999999999999999999999887889999999999999 68999999999999999999999999764

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-52  Score=346.71  Aligned_cols=235  Identities=42%  Similarity=0.688  Sum_probs=218.8

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhcccCCCCcCCCCCCCCch
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~   81 (244)
                      .|..++|++|+.+.-...-.+.++..+..+++.+||...++.+++... .+..++.+-+++.|+.++|||++.|++++|+
T Consensus        25 ~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL  104 (342)
T COG5029          25 QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHL  104 (342)
T ss_pred             ccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhH
Confidence            467899999999987776667788888999999999999999999865 5688999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHH
Q 026025           82 LYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIV  158 (244)
Q Consensus        82 ~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~  158 (244)
                      .+|++||++|.+++.+   ++++++++.+||..+|++||+|.....+|+|.+..|+|+.+++++|.++..+.|.+++||+
T Consensus       105 ~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~  184 (342)
T COG5029         105 ASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLK  184 (342)
T ss_pred             HHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            9999999999999754   5667888999999999999999998889999999999999999999988889999999999


Q ss_pred             hcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCC-HHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhh
Q 026025          159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD-KDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEH  237 (244)
Q Consensus       159 ~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~-~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~  237 (244)
                      +|||.||||+..|+.|+|+++||||+++|++++.++.++ ++++++||.+||-+.|||+||+||.+|+||+||++.-|-.
T Consensus       185 kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~i  264 (342)
T COG5029         185 KCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAI  264 (342)
T ss_pred             HhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHHh
Confidence            999999999999999999999999999999999999888 7999999999999999999999999999999998765543

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=4e-51  Score=352.59  Aligned_cols=233  Identities=43%  Similarity=0.758  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhcc-cCCCCcCCCCCCCCchhh
Q 026025            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLY   83 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~-~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~~   83 (244)
                      +++|++||++.++.+ ++.....++++++.+||++++|++||. .+..+++++++||++|| ++||||+..++.++|+..
T Consensus         1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~   79 (286)
T cd02890           1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAS   79 (286)
T ss_pred             ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHH
Confidence            489999999999976 677777789999999999999999998 34568999999999999 999999999999999999


Q ss_pred             HHHHHHHHHHhcC--CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcC
Q 026025           84 TLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (244)
Q Consensus        84 T~~al~~L~~l~~--~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q  161 (244)
                      ||+|+.+|.++++  .+.++++++++||.++|++||||...+.+++|+++|||+++++.+++.....+++++++||++||
T Consensus        80 T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q  159 (286)
T cd02890          80 TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ  159 (286)
T ss_pred             HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence            9999999999987  57778999999999999999999999989999999999999999999876678999999999999


Q ss_pred             CCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCc-cccCCCCCCCCccccchhhHhhhhhh
Q 026025          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       162 ~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~G-Gf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      ++||||+.+|+.++|+.+||||+++|.+++..+.++++++++||++||..+| ||+++|+|.+|+||+||++.+|..+.
T Consensus       160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~  238 (286)
T cd02890         160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILG  238 (286)
T ss_pred             CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcc
Confidence            9999999999999999999999999999999888999999999999998777 99999999999999999988887664

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=2.1e-49  Score=344.97  Aligned_cols=238  Identities=21%  Similarity=0.321  Sum_probs=224.0

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (244)
                      ++++++.++||.++|+++|+|.....+++++..||.|+.+|.+++....++++++++||.++|++||||+..++.+.|+.
T Consensus        55 ~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r  134 (316)
T PLN03201         55 DVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTR  134 (316)
T ss_pred             cccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHH
Confidence            46889999999999999999988777778999999999999999766556889999999999999999999888999999


Q ss_pred             hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (244)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~  162 (244)
                      .||+|++++.+++..+.++++++++||.+||++||||+.+|++|+|..+|||++++|.+++.++.++.+++++||.+||+
T Consensus       135 ~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~  214 (316)
T PLN03201        135 FSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQV  214 (316)
T ss_pred             HHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCC
Confidence            99999999999998877889999999999999999999999999999999999999999998777788999999999999


Q ss_pred             CCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccc-cCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       163 ~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      ++|||+.+|++++|++||||++++|.++++.+.+|.+++.+||++||. ..|||+++|++.||.||||+.|..|.++..
T Consensus       215 ~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~  293 (316)
T PLN03201        215 KSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGY  293 (316)
T ss_pred             CCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999888999999999999995 589999999999999999999999988743

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.5e-48  Score=336.54  Aligned_cols=236  Identities=25%  Similarity=0.424  Sum_probs=221.3

Q ss_pred             cccHHHHHHHHHHcc-cCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcccCCCCcCCCCCCCC
Q 026025            3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (244)
                      +.+++++++||+++| ++||+|.....+++++..||+|+.+|.+++..  .+.+++++++||.++|++||||...++.++
T Consensus        46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~  125 (286)
T cd02890          46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEV  125 (286)
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCc
Confidence            467899999999999 99999998777789999999999999999973  456789999999999999999999888899


Q ss_pred             chhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (244)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~  159 (244)
                      |+..||+|+.+|.+++.....+++++++||.++|++||||+.+|++++|+++|||++++|.+++..+.++++++++||++
T Consensus       126 d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~  205 (286)
T cd02890         126 DTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVE  205 (286)
T ss_pred             hHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            99999999999999998777789999999999999999999999999999999999999999999878899999999999


Q ss_pred             cCCCCC-CCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHH-cccccCccccCCCCCCCCccccchhhHhhhh
Q 026025          160 CKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC-ERQVKSGGLNGRPEKLPDVGIFSQPNLMMEH  237 (244)
Q Consensus       160 ~Q~~dG-Gf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~-~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~  237 (244)
                      ||+++| ||+.+|++++|++||||++++|.+++..+.++.+++.+||+ .+|.++|||+++|++.+|+|||||+|..|..
T Consensus       206 ~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl  285 (286)
T cd02890         206 RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSL  285 (286)
T ss_pred             hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHc
Confidence            999997 99999999999999999999999999887789999999999 5679999999999999999999999999976


Q ss_pred             h
Q 026025          238 S  238 (244)
Q Consensus       238 ~  238 (244)
                      +
T Consensus       286 ~  286 (286)
T cd02890         286 L  286 (286)
T ss_pred             C
Confidence            3

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-48  Score=321.71  Aligned_cols=234  Identities=32%  Similarity=0.559  Sum_probs=204.0

Q ss_pred             cccHHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCC--------CCcCC
Q 026025            3 ELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES--------GGFAG   73 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~d--------Ggf~~   73 (244)
                      ++.++||++|+++..+ -+-+|.  ..|.+++..++|++++|++|+..+.++++..++||.+.|-..        -||.+
T Consensus        10 ~~~~~kH~~ff~RhL~llP~~y~--shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G   87 (347)
T KOG0367|consen   10 RFERKKHIKFFERHLQLLPSPYQ--SHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG   87 (347)
T ss_pred             hhhHHHHHHHHHHHHHhCCCccc--ccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence            6789999999999765 454444  446788989999999999999987778999999999987321        24433


Q ss_pred             C----------CCCCCchhhHHHHHHHHHHhcC-CCccCHHHHHHHHHhccCCCCCccCCC-CCCCChhhHHHHHHHHHh
Q 026025           74 N----------IGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYIAICCLSI  141 (244)
Q Consensus        74 ~----------~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~-~~~~d~~~ty~al~~l~~  141 (244)
                      .          +-.+||+..||+++..|.++++ ++.+|++.+++++..+|++||+|...+ ++++|+|++|||++++.+
T Consensus        88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ym  167 (347)
T KOG0367|consen   88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYM  167 (347)
T ss_pred             eccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHH
Confidence            2          1246899999999999999975 678899999999999999999998644 678999999999999999


Q ss_pred             hccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC--C----CCCHHHHHHHHHcccccCccc
Q 026025          142 LQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--H----HVDKDLLGWWLCERQVKSGGL  215 (244)
Q Consensus       142 l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~--~----~~~~~~~~~wL~~~Q~~~GGf  215 (244)
                      |+.+..++.++++.||++||++||||+..|++|+|+++||||+++|++++++  +    ..+++++++|+.+||..+|||
T Consensus       168 Ld~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGf  247 (347)
T KOG0367|consen  168 LDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGF  247 (347)
T ss_pred             hccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCc
Confidence            9988889999999999999999999999999999999999999999999986  2    245899999999999999999


Q ss_pred             cCCCCCCCCccccchhhHhhhhh
Q 026025          216 NGRPEKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       216 ~~~~~~~~d~~ys~~~l~~l~~~  238 (244)
                      +||+||++|+||+||.+..|-++
T Consensus       248 qGR~NKp~DTCYaFWigasLklL  270 (347)
T KOG0367|consen  248 QGRTNKPVDTCYAFWIGASLKLL  270 (347)
T ss_pred             CCCCCCCchhHHHHHHHHHHHHc
Confidence            99999999999999988777554

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=5.5e-47  Score=327.75  Aligned_cols=235  Identities=22%  Similarity=0.326  Sum_probs=218.3

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCC
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (244)
                      ++++++.++||.++|+++|+|.....+++++..||+|+.+|.+++.+   ...+++++++||.+||++||||+..++.++
T Consensus        46 ~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~  125 (299)
T cd02893          46 QSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEV  125 (299)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence            45689999999999999999988777789999999999999999974   245788999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (244)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~  159 (244)
                      |+..||+|+.++.+++..+..+++++++||.+||++||||+++|++|+|.++|||++++|.+++..+.++++++++||++
T Consensus       126 D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~  205 (299)
T cd02893         126 DVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVA  205 (299)
T ss_pred             hHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHh
Confidence            99999999999999998777789999999999999999999999999999999999999999998877899999999999


Q ss_pred             cCCC-CCCCCCCCCCCcchhHHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHccc-ccCccccCCCCCCCC
Q 026025          160 CKNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPD  224 (244)
Q Consensus       160 ~Q~~-dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d  224 (244)
                      +|++ +|||..+|++++|++||||++++|.+++..             ..++.+++.+||+.+| ..+|||+++|++.+|
T Consensus       206 ~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D  285 (299)
T cd02893         206 RQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRD  285 (299)
T ss_pred             hcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCC
Confidence            9987 999999999999999999999999999864             3478999999999765 889999999999999


Q ss_pred             ccccchhhHhhhh
Q 026025          225 VGIFSQPNLMMEH  237 (244)
Q Consensus       225 ~~ys~~~l~~l~~  237 (244)
                      +++|+.+|..|..
T Consensus       286 ~yHT~~~l~~Lsl  298 (299)
T cd02893         286 FYHTCYALSGLSI  298 (299)
T ss_pred             chhHHHHHHHHhc
Confidence            9999999999875

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=4.5e-47  Score=338.15  Aligned_cols=238  Identities=18%  Similarity=0.287  Sum_probs=219.0

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCC
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (244)
                      +.++++.++||.++|+++|+|....++.+++..||+|+.+|.+||.+   ..++++++++||++||++||||+..++.++
T Consensus        91 ~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~  170 (439)
T PLN02710         91 DELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEM  170 (439)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCC
Confidence            45778999999999999999998888889999999999999999964   346899999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (244)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~  159 (244)
                      |+..||+|++++.+++.++..+++++++||.+||+.||||+++|+.|+|.++|||++++|.+||.++.++.+++++||.+
T Consensus       171 D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~  250 (439)
T PLN02710        171 DVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVF  250 (439)
T ss_pred             CcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHH
Confidence            99999999999999998877789999999999999999999999999999999999999999999888899999999999


Q ss_pred             cCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC---------------------------------------------
Q 026025          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---------------------------------------------  194 (244)
Q Consensus       160 ~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~---------------------------------------------  194 (244)
                      ||+.+|||+++|++.+|++|+||++++|.++++..                                             
T Consensus       251 rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T PLN02710        251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKV  330 (439)
T ss_pred             hcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999998531                                             


Q ss_pred             --------------CCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          195 --------------HVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       195 --------------~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                                    .+|.+++.+||+.|| .++|||+.+|+|.+|.++|++.|.-|+.++.
T Consensus       331 ~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~  391 (439)
T PLN02710        331 GFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQY  391 (439)
T ss_pred             ccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhh
Confidence                          145678999999985 8899999999999999999977777766654

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-42  Score=281.11  Aligned_cols=238  Identities=21%  Similarity=0.316  Sum_probs=227.2

Q ss_pred             ccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCch
Q 026025            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (244)
Q Consensus         2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~   81 (244)
                      +|+.+|+.+.|+++||+++|+|....+.++.+-.|..|+++|++....+-.++++++.||...|++||.|.+....+-+.
T Consensus        64 e~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDT  143 (329)
T KOG0366|consen   64 ERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDT  143 (329)
T ss_pred             chhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccch
Confidence            57889999999999999999999888888999999999999999997666689999999999999999999988889999


Q ss_pred             hhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcC
Q 026025           82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (244)
Q Consensus        82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q  161 (244)
                      ..+|+|+..|++|+.++.++++++++|+.+|.|-||||+..|+.|+|..-+||.+++|+++|.++.++.|....||...|
T Consensus       144 Rfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ  223 (329)
T KOG0366|consen  144 RFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQ  223 (329)
T ss_pred             hhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhhh
Q 026025          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       162 ~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      .+.||...+|.+-||++|++|++++|+++++++.++.+++.+||++|| .++|||+.||+..+|+.++++.++-|+++.
T Consensus       224 ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg  302 (329)
T KOG0366|consen  224 LPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLG  302 (329)
T ss_pred             CCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhC
Confidence            999999999999999999999999999999999999999999999999 699999999999999999998888777764

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-40  Score=277.45  Aligned_cols=239  Identities=19%  Similarity=0.344  Sum_probs=222.2

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (244)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (244)
                      .++|+.+-|+.+++.++|+|+....+++++..||+|+++|.+++..   ...+++.+.+||..+|+|||+|-...-.+.+
T Consensus        75 ~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevD  154 (342)
T COG5029          75 VDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVD  154 (342)
T ss_pred             hhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcch
Confidence            4578889999999999999998888899999999999999999743   3457788999999999999999888778889


Q ss_pred             hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhh-HHHHHHHHHh
Q 026025           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN-VDKAVEYIVS  159 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~-~e~~~~~i~~  159 (244)
                      ....|+|+.++.+++.++..+.+.+++||++||+.||||+..|+.|+|..+|||++++|++++.++..+ +|++++||..
T Consensus       155 tr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~  234 (342)
T COG5029         155 TRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAE  234 (342)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            999999999999999988888999999999999999999999999999999999999999999988877 7999999999


Q ss_pred             cCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhh
Q 026025          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       160 ~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~  238 (244)
                      .|.+.|||.+++++.+|++|.||++++|+++++.+.++.+++.+||+.|| ...|||+.+|++.+|.+++-..|+.|..+
T Consensus       235 RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~  314 (342)
T COG5029         235 RQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLI  314 (342)
T ss_pred             cccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999997 56999999999999999999999988877


Q ss_pred             hhcc
Q 026025          239 CRSS  242 (244)
Q Consensus       239 ~~~~  242 (244)
                      .-|.
T Consensus       315 ~~k~  318 (342)
T COG5029         315 EYKY  318 (342)
T ss_pred             ccCC
Confidence            6553

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-35  Score=246.21  Aligned_cols=239  Identities=21%  Similarity=0.339  Sum_probs=211.2

Q ss_pred             cccHHHHHHHHHHcccCC---CC-----ccc----------cccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHh
Q 026025            3 ELAADKHVKYIISVEKKK---DS-----FES----------VVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILK   63 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~d---g~-----~~~----------~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~   63 (244)
                      +++++.+++|+.+.|-.+   ..     |..          ...+.+.+.+||+++.+|.+||.. ...+++.+++++..
T Consensus        57 ~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~  136 (347)
T KOG0367|consen   57 SVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSA  136 (347)
T ss_pred             ccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHH
Confidence            567899999999987532   22     211          022457889999999999999985 45789999999999


Q ss_pred             cccCCCCcCCC-CCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhh
Q 026025           64 CQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL  142 (244)
Q Consensus        64 ~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l  142 (244)
                      ||++||.|... .|.+++....|+|+.+..+|+..+.+|.++++.||+++|+.||||+..|++|+|..+||||+++|+++
T Consensus       137 ~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~  216 (347)
T KOG0367|consen  137 CQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALM  216 (347)
T ss_pred             hcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHH
Confidence            99999999766 47889999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             ccC------ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccc
Q 026025          143 QRL------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGL  215 (244)
Q Consensus       143 ~~~------~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf  215 (244)
                      +.+      +..++|+.++|+...|..+|||.++++++.|.+|.||..++|.+|+....++.+++.+||.++| .--|||
T Consensus       217 ~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGF  296 (347)
T KOG0367|consen  217 GKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGF  296 (347)
T ss_pred             hhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcc
Confidence            976      2346899999999999999999999999999999999999999999988899999999999999 556999


Q ss_pred             cCCCCCCCCccccchhhHhhhhhhhc
Q 026025          216 NGRPEKLPDVGIFSQPNLMMEHSCRS  241 (244)
Q Consensus       216 ~~~~~~~~d~~ys~~~l~~l~~~~~~  241 (244)
                      .+.|+..||.++||..+.+|.+.-.|
T Consensus       297 sK~P~~~pD~~HsylG~~alal~ee~  322 (347)
T KOG0367|consen  297 SKWPEEDPDLLHSYLGLAALALLEEK  322 (347)
T ss_pred             cCCCccCchHHHHHHHHHHHHHhcCC
Confidence            99999999999999888887766544

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-33  Score=238.12  Aligned_cols=231  Identities=20%  Similarity=0.310  Sum_probs=208.8

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (244)
                      .++++.||..+|.|.|+|+.-+++.+.+..||-|+.+|-++|.+.   .++++++.+||.++.++||||-...+.+.++.
T Consensus       122 ~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvR  201 (423)
T KOG0365|consen  122 KENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVR  201 (423)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHH
Confidence            568999999999999999998889999999999999999999863   57899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (244)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~  162 (244)
                      +.|||+.+-.+++-...---+...+||.+||+.+|||++.|+.|.|..||||++|+|.+|+..+..+.+++.+|..+.|.
T Consensus       202 s~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm  281 (423)
T KOG0365|consen  202 SAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQM  281 (423)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhh
Confidence            99999999888876543235788999999999999999999999999999999999999999888999999999999997


Q ss_pred             -CCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-----C-----CCCHHHHHHHHHcc-cccCccccCCCCCCCCccccch
Q 026025          163 -LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-----H-----HVDKDLLGWWLCER-QVKSGGLNGRPEKLPDVGIFSQ  230 (244)
Q Consensus       163 -~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-----~-----~~~~~~~~~wL~~~-Q~~~GGf~~~~~~~~d~~ys~~  230 (244)
                       .+|||.++.++-.|++|+||.-++..++...     +     ..+.+++.+||+.| |.+.|||..-|+|+.|.|++.+
T Consensus       282 ~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCY  361 (423)
T KOG0365|consen  282 RFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCY  361 (423)
T ss_pred             hhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhh
Confidence             7899999999999999999998888887642     1     36789999999886 9999999999999999988886


Q ss_pred             hhHhhh
Q 026025          231 PNLMME  236 (244)
Q Consensus       231 ~l~~l~  236 (244)
                      .|.=|+
T Consensus       362 cLsGLS  367 (423)
T KOG0365|consen  362 CLSGLS  367 (423)
T ss_pred             Hhcchh
Confidence            665554

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.98  E-value=6.2e-31  Score=224.58  Aligned_cols=233  Identities=27%  Similarity=0.324  Sum_probs=204.2

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccc-cchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCC--
Q 026025            4 LAADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH--   77 (244)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~--   77 (244)
                      -.++++++||.+.|++||+|.++... .++++.|++++.+|..++..   .....+++++||.++|++||||......  
T Consensus        52 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~  131 (300)
T cd00688          52 ENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNH  131 (300)
T ss_pred             HHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCC
Confidence            35789999999999999999988765 78999999999999999863   2346889999999999999999877554  


Q ss_pred             -----CCchhhHHHHHHHHHHhcCCC-ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHH
Q 026025           78 -----DPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD  151 (244)
Q Consensus        78 -----~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e  151 (244)
                           .+++..|++++.+|..++... ..+++++++||.++|++||||  .+..++|+..|++++.+|..++.......+
T Consensus       132 ~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~  209 (300)
T cd00688         132 RIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAK  209 (300)
T ss_pred             cccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHH
Confidence                 678899999999999887643 346899999999999999999  566778999999999999999875456789


Q ss_pred             HHHHHHHhcCCCCCCCCCCC---CCCcchhHHHHHHHHHHHhCCC-CCCCHHHHHHHHHcccccCccccCCCCCCCCccc
Q 026025          152 KAVEYIVSCKNLDGGFGCTP---GGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGI  227 (244)
Q Consensus       152 ~~~~~i~~~Q~~dGGf~~~p---~~~~~~~~T~~al~aL~~l~~~-~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~y  227 (244)
                      ++++||+++|..+|||...+   ..+++..+|++++.+|..++.. +....+++++||+.+|..+|||...|++.+|+++
T Consensus       210 ~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~  289 (300)
T cd00688         210 KALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQH  289 (300)
T ss_pred             HHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchh
Confidence            99999999999999999875   6789999999999999988764 4567899999999999999999999999999999


Q ss_pred             cchhhHhhhhh
Q 026025          228 FSQPNLMMEHS  238 (244)
Q Consensus       228 s~~~l~~l~~~  238 (244)
                      ++|+|.+|.++
T Consensus       290 t~~al~aL~~~  300 (300)
T cd00688         290 TVFALLALSLY  300 (300)
T ss_pred             hHHHHHHHhcC
Confidence            99999999764

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.96  E-value=3.7e-28  Score=207.43  Aligned_cols=229  Identities=32%  Similarity=0.479  Sum_probs=194.4

Q ss_pred             HHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC------CCcCHHHHHHHHHhcccCCCCcCCCCCC-CC
Q 026025            7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL------DAVDEEDVISWILKCQDESGGFAGNIGH-DP   79 (244)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~------~~~~~~~~i~~l~~~q~~dGgf~~~~~~-~~   79 (244)
                      +++++||++.+.++|+|.... ....+..+++++.++..++..      ....++++++||.++|++||||+..++. .+
T Consensus         2 ~~~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~   80 (300)
T cd00688           2 EKHLKYLLRYPYGDGHWYQSL-CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYP   80 (300)
T ss_pred             hhHHHHHHHccccCCCccccC-CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCc
Confidence            689999999999999874322 346788899999999988752      2346889999999999999999998877 89


Q ss_pred             chhhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCCCCCccCCCCC-------CCChhhHHHHHHHHHhhccCC-hh
Q 026025           80 HVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWG-------EVDTRFSYIAICCLSILQRLD-KI  148 (244)
Q Consensus        80 ~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~dGgf~~~~~~-------~~d~~~ty~al~~l~~l~~~~-~~  148 (244)
                      ++..|+.++.+|..++..   ....++++++||.++|++||+|......       ..++..|++++.+|..++... ..
T Consensus        81 ~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~  160 (300)
T cd00688          81 SLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDP  160 (300)
T ss_pred             chHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcH
Confidence            999999999999988753   3345789999999999999999865432       578889999999999988743 45


Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCC---CCCCCc
Q 026025          149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP---EKLPDV  225 (244)
Q Consensus       149 ~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~---~~~~d~  225 (244)
                      .++++++||.++|++||||  .++.+++...|++++.+|..++.......+++++||+++|..+|||...+   .+.+|.
T Consensus       161 ~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~  238 (300)
T cd00688         161 LIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDS  238 (300)
T ss_pred             HHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCch
Confidence            7899999999999999999  67788999999999999999986545668999999999999999998875   889999


Q ss_pred             cccchhhHhhhhh
Q 026025          226 GIFSQPNLMMEHS  238 (244)
Q Consensus       226 ~ys~~~l~~l~~~  238 (244)
                      |+++|.+..|...
T Consensus       239 ~~~~~~~~aL~~~  251 (300)
T cd00688         239 CYTEWAAYALLAL  251 (300)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888777554

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.95  E-value=4.8e-27  Score=221.10  Aligned_cols=232  Identities=21%  Similarity=0.214  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHccc--------------CCCCcccccc--ccchHHHHHHHHHHHHhhC---CC-----CCcCHHHHHHHH
Q 026025            6 ADKHVKYIISVEK--------------KKDSFESVVM--EHLRLNGAYWGLTTLDILG---KL-----DAVDEEDVISWI   61 (244)
Q Consensus         6 ~~~~~~yl~~~q~--------------~dg~~~~~~~--~~~~~~~~y~al~~l~llg---~~-----~~~~~~~~i~~l   61 (244)
                      .+|+.+||++.|.              ++|+|.+...  ..++...|.-++.+|..+.   ..     +....+++++||
T Consensus       330 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~L  409 (634)
T TIGR03463       330 LERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFI  409 (634)
T ss_pred             HHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHH
Confidence            4689999999984              5788876532  2334444666777665533   21     113567899999


Q ss_pred             HhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCCCc--------cCHHHHHHHHHhc
Q 026025           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDI--------LDADKVSNYIVGL  112 (244)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~--------~~~~~~~~~l~~~  112 (244)
                      +++||+||||+.+..                     ..+++..|..+|.+|..+.....        ..++++++||++.
T Consensus       410 l~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~  489 (634)
T TIGR03463       410 LSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR  489 (634)
T ss_pred             HHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence            999999999995532                     34688899999999988754221        1268899999999


Q ss_pred             cCCCCCccCCCCCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCC----------CCCCcchhHHH
Q 026025          113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIF  181 (244)
Q Consensus       113 q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~~~T~  181 (244)
                      |++||||.+..+ ......|++++.+|...|.. ....++++++||+++|++||||+..          ++.++++..|+
T Consensus       490 Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA  568 (634)
T TIGR03463       490 QREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTS  568 (634)
T ss_pred             cCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHH
Confidence            999999987654 34455688899999888863 4567899999999999999999753          34578999999


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCC--CCCCCccc----cc---hhhHhhhhh
Q 026025          182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGI----FS---QPNLMMEHS  238 (244)
Q Consensus       182 ~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~~~~d~~y----s~---~~l~~l~~~  238 (244)
                      |||.+|...+..+...++++++||+++|.++|||...+  +.++-.||    .|   |||.+|++|
T Consensus       569 ~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l~Y~~Y~~~fpl~ALg~y  634 (634)
T TIGR03463       569 WALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAMLDYDLYLRYFPTWALAVC  634 (634)
T ss_pred             HHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeEecCccchHhHHHHhhcC
Confidence            99999999987666678999999999999999996643  33333333    22   999999875

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.95  E-value=3e-26  Score=215.54  Aligned_cols=234  Identities=18%  Similarity=0.146  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHccc-------------CCCCccccccc--cchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccc
Q 026025            6 ADKHVKYIISVEK-------------KKDSFESVVME--HLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD   66 (244)
Q Consensus         6 ~~~~~~yl~~~q~-------------~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~----~~~~~~~i~~l~~~q~   66 (244)
                      ..++.+||++.|.             ++|+|.+....  .+++..|..++.+|..++...    ....+++++||+++|+
T Consensus       338 l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn  417 (635)
T TIGR01507       338 LVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQS  417 (635)
T ss_pred             HHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcC
Confidence            5689999999863             36777765322  578888999999998875321    2367899999999999


Q ss_pred             CCCCcCCCCC-------------------CCCchhhHHHHHHHHHHhcCC-CccCHHHHHHHHHhccCCCCCccCCCCCC
Q 026025           67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE  126 (244)
Q Consensus        67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~q~~dGgf~~~~~~~  126 (244)
                      +||||+.+..                   ..|.+..|..++.+|...+.. +...++++++||.+.|++||||.++++ .
T Consensus       418 ~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~  496 (635)
T TIGR01507       418 SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-V  496 (635)
T ss_pred             CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-C
Confidence            9999976531                   135667899999999877532 222478999999999999999976654 2


Q ss_pred             CChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCC----------CCCCcchhHHHHHHHHHHHhCCCCC
Q 026025          127 VDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCVGALAIAGALHH  195 (244)
Q Consensus       127 ~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~~~T~~al~aL~~l~~~~~  195 (244)
                      .++..|..++.+|...|.. ....++++++||+++|++||||++.          +.+++++..|.+||.+|...+..+.
T Consensus       497 ~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~  576 (635)
T TIGR01507       497 NYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAES  576 (635)
T ss_pred             ccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence            2333344455555555542 3456899999999999999999864          2247899999999999999987666


Q ss_pred             CCHHHHHHHHHcccccCccccCC-------CCCCCCccccc---hhhHhhhhhhh
Q 026025          196 VDKDLLGWWLCERQVKSGGLNGR-------PEKLPDVGIFS---QPNLMMEHSCR  240 (244)
Q Consensus       196 ~~~~~~~~wL~~~Q~~~GGf~~~-------~~~~~d~~ys~---~~l~~l~~~~~  240 (244)
                      ..++++++||.++|+++|||.-.       |....=.|+.|   |||.+|+.|++
T Consensus       577 ~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~Y~~Y~~~fpl~ALg~y~~  631 (635)
T TIGR01507       577 EAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYHMYRHVFPLLALARYKQ  631 (635)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeecccchhhHhHHHHHHHHHH
Confidence            67999999999999999999653       22211112222   99999999976

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>PLN02993 lupeol synthase

Probab=99.94  E-value=1.2e-25  Score=212.13  Aligned_cols=235  Identities=17%  Similarity=0.190  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHcccC---------------CCCcccccc--ccchHHHHHHHHHHHHhhCCCC---------CcCHHHHHH
Q 026025            6 ADKHVKYIISVEKK---------------KDSFESVVM--EHLRLNGAYWGLTTLDILGKLD---------AVDEEDVIS   59 (244)
Q Consensus         6 ~~~~~~yl~~~q~~---------------dg~~~~~~~--~~~~~~~~y~al~~l~llg~~~---------~~~~~~~i~   59 (244)
                      ..|+.+||++.|..               +|+|.+...  ..++...|.=++.++-+|...+         .+...++++
T Consensus       441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~  520 (763)
T PLN02993        441 LRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVN  520 (763)
T ss_pred             HHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHH
Confidence            46888999987762               366665432  2334444555555433332211         134678999


Q ss_pred             HHHhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCC-C-----c--cCHHHHHHHHH
Q 026025           60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D-----I--LDADKVSNYIV  110 (244)
Q Consensus        60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~-----~--~~~~~~~~~l~  110 (244)
                      ||+++||+||||+.+..                     ..+.+..|..+|.+|.+++.. .     .  ..++++++||.
T Consensus       521 wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~  600 (763)
T PLN02993        521 LLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIE  600 (763)
T ss_pred             HHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHH
Confidence            99999999999998752                     157788999999999988642 1     1  13688999999


Q ss_pred             hccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCC--hhhHHHHHHHHHhcCCCCCCCCCCC------------CCCcc
Q 026025          111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP------------GGESH  176 (244)
Q Consensus       111 ~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~--~~~~e~~~~~i~~~Q~~dGGf~~~p------------~~~~~  176 (244)
                      +.|++||||.++++ ...+..|++++.+|...|...  ...++|+++||+++|++||||++..            ++.|+
T Consensus       601 ~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St  679 (763)
T PLN02993        601 SKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSN  679 (763)
T ss_pred             HhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCc
Confidence            99999999998754 234445667888887777642  2578999999999999999998752            24589


Q ss_pred             hhHHHHHHHHHHHhCCCCC--CCHHHHHHHHHcccccCccccCC--CCCCCCccc----cc---hhhHhhhhhhhc
Q 026025          177 SGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVGI----FS---QPNLMMEHSCRS  241 (244)
Q Consensus       177 ~~~T~~al~aL~~l~~~~~--~~~~~~~~wL~~~Q~~~GGf~~~--~~~~~d~~y----s~---~~l~~l~~~~~~  241 (244)
                      +..|.||+.+|...+..+.  ..++++++||.++|.++|+|--.  .+.++-.||    +|   +||.+|+.|++-
T Consensus       680 ~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~  755 (763)
T PLN02993        680 LVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRKA  755 (763)
T ss_pred             hhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccceeccCccchHHHHHHHHHHHHh
Confidence            9999999999999986433  35889999999999999987432  233444443    22   999999999863

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.93  E-value=5.3e-25  Score=208.35  Aligned_cols=232  Identities=22%  Similarity=0.246  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHccc--------------CCCCcccccc--ccchHHHHHHHHHHHHhhCCCC-------CcCHHHHHHHHH
Q 026025            6 ADKHVKYIISVEK--------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWIL   62 (244)
Q Consensus         6 ~~~~~~yl~~~q~--------------~dg~~~~~~~--~~~~~~~~y~al~~l~llg~~~-------~~~~~~~i~~l~   62 (244)
                      .+++++||++.|.              ++|+|.+...  ..+++..|..++.+|..++..+       ....+++++||+
T Consensus       331 l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl  410 (634)
T cd02892         331 LKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLL  410 (634)
T ss_pred             HHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHH
Confidence            5789999999985              4667765421  2345556888888888887542       134678999999


Q ss_pred             hcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCCCcc-------CHHHHHHHHHhccC
Q 026025           63 KCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDIL-------DADKVSNYIVGLQN  114 (244)
Q Consensus        63 ~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~~-------~~~~~~~~l~~~q~  114 (244)
                      ++|++||||+.+..                     ..+++..|.+++.+|..++.....       .++++++||.+.|+
T Consensus       411 ~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~  490 (634)
T cd02892         411 GMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQE  490 (634)
T ss_pred             hccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccC
Confidence            99999999985321                     136778899999999988654321       36889999999999


Q ss_pred             CCCCccCCCCCCCChhhHHHHHHHHHhhccC--ChhhHHHHHHHHHhcCCCCCCCCCCC----------CCCcchhHHHH
Q 026025          115 EDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFC  182 (244)
Q Consensus       115 ~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~e~~~~~i~~~Q~~dGGf~~~p----------~~~~~~~~T~~  182 (244)
                      +||||.++.+ ...+..|+.++.+|...|..  ....++++++||+++|++||||+..+          +.++++..|.+
T Consensus       491 ~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~  569 (634)
T cd02892         491 PDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAW  569 (634)
T ss_pred             CCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHH
Confidence            9999977653 23334455677777777753  24578999999999999999998642          35688999999


Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCC--C-CCCccccc------hhhHhhhhh
Q 026025          183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPE--K-LPDVGIFS------QPNLMMEHS  238 (244)
Q Consensus       183 al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~--~-~~d~~ys~------~~l~~l~~~  238 (244)
                      |+.+|...+..+...++++++||.++|.++|||.-..-  . .+..++.|      |||.+|++|
T Consensus       570 AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~y~~Y~~~fpl~ALg~y  634 (634)
T cd02892         570 ALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIRYHNYRNYFPLWALGRY  634 (634)
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeeccCchhhHhHHHHhhcC
Confidence            99999988876556789999999999999999955220  0 11122222      999999875

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>PLN03012 Camelliol C synthase

Probab=99.93  E-value=4.3e-25  Score=208.13  Aligned_cols=235  Identities=17%  Similarity=0.177  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHcccC---------------CCCcccccc--ccchHHHHHHHHHH---HHhhCCC---C---CcCHHHHHH
Q 026025            6 ADKHVKYIISVEKK---------------KDSFESVVM--EHLRLNGAYWGLTT---LDILGKL---D---AVDEEDVIS   59 (244)
Q Consensus         6 ~~~~~~yl~~~q~~---------------dg~~~~~~~--~~~~~~~~y~al~~---l~llg~~---~---~~~~~~~i~   59 (244)
                      ..|+.+||++.|..               .|+|.+...  ..++...|.=++.+   +.++...   .   .....++++
T Consensus       441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~  520 (759)
T PLN03012        441 LRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVN  520 (759)
T ss_pred             HHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence            46888999988762               255554322  12333345555544   3433321   1   134678999


Q ss_pred             HHHhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCCC------cc--CHHHHHHHHH
Q 026025           60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DADKVSNYIV  110 (244)
Q Consensus        60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~~~~~~l~  110 (244)
                      ||+++||+||||+.+..                     ..+...+|..+|.+|.++....      .+  .++++++||+
T Consensus       521 wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~  600 (759)
T PLN03012        521 ILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIE  600 (759)
T ss_pred             HHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHH
Confidence            99999999999987643                     2466678999999998876421      12  3688999999


Q ss_pred             hccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC--ChhhHHHHHHHHHhcCCCCCCCCCCC------------CCCcc
Q 026025          111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP------------GGESH  176 (244)
Q Consensus       111 ~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~e~~~~~i~~~Q~~dGGf~~~p------------~~~~~  176 (244)
                      +.|++||||.++++-. .+-.|.+|+.+|...|..  +...++|+++||++.|++||||++.-            +..|+
T Consensus       601 ~~Q~~DGsW~G~Wgv~-y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~  679 (759)
T PLN03012        601 NIQMLDGSWYGNWGIC-FTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISN  679 (759)
T ss_pred             HhcCCCCCCccccccc-CCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCc
Confidence            9999999999887531 112344567777777763  23578999999999999999999864            23589


Q ss_pred             hhHHHHHHHHHHHhCCCCC--CCHHHHHHHHHcccccCccccCC--CCCCCCccc----cc---hhhHhhhhhhhc
Q 026025          177 SGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVGI----FS---QPNLMMEHSCRS  241 (244)
Q Consensus       177 ~~~T~~al~aL~~l~~~~~--~~~~~~~~wL~~~Q~~~GGf~~~--~~~~~d~~y----s~---~~l~~l~~~~~~  241 (244)
                      +..|+||+.+|...++.+.  ..++|+++||+++|.++|+|--.  .+.++-.||    +|   +||.+|++|++-
T Consensus       680 ~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~  755 (759)
T PLN03012        680 LVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEYRAR  755 (759)
T ss_pred             HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccchHHHHHHHHHHHHh
Confidence            9999999999999987433  35899999999999999998432  222333332    22   999999999864

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.92  E-value=2.2e-24  Score=202.84  Aligned_cols=234  Identities=21%  Similarity=0.168  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHcccCC---------------CCcccccc--ccchHHHHHHHHHHHHhhCCC-C---CcCHHHHHHHHHhc
Q 026025            6 ADKHVKYIISVEKKK---------------DSFESVVM--EHLRLNGAYWGLTTLDILGKL-D---AVDEEDVISWILKC   64 (244)
Q Consensus         6 ~~~~~~yl~~~q~~d---------------g~~~~~~~--~~~~~~~~y~al~~l~llg~~-~---~~~~~~~i~~l~~~   64 (244)
                      ..++.+||++.|..+               |+|.+...  ..+++..|--++.++.++... .   ....+++++||.++
T Consensus       321 i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~  400 (621)
T TIGR01787       321 LVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGM  400 (621)
T ss_pred             HHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHH
Confidence            578999999998855               66654332  124666666666555554431 1   23467899999999


Q ss_pred             ccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCC-C--ccCHHHHHHHHHhccCCCCCcc
Q 026025           65 QDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D--ILDADKVSNYIVGLQNEDGSFS  120 (244)
Q Consensus        65 q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~--~~~~~~~~~~l~~~q~~dGgf~  120 (244)
                      |++||||+.+..                     ..+.+..|..+|.+|...+.. +  ...++++++||.+.|++||+|.
T Consensus       401 Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~  480 (621)
T TIGR01787       401 QSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWF  480 (621)
T ss_pred             cCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCc
Confidence            999999985431                     123446899999999877531 1  1237899999999999999998


Q ss_pred             CCCCCCCChhhHHHHHHHHHhhccCC--hhhHHHHHHHHHhcCCCCCCCCCCC----------CCCcchhHHHHHHHHHH
Q 026025          121 GDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALA  188 (244)
Q Consensus       121 ~~~~~~~d~~~ty~al~~l~~l~~~~--~~~~e~~~~~i~~~Q~~dGGf~~~p----------~~~~~~~~T~~al~aL~  188 (244)
                      ++.+. ..+..|..++.+|..+|...  ...++++++||+++|++||||+...          ..+|++..|.|||.+|.
T Consensus       481 g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~  559 (621)
T TIGR01787       481 GRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI  559 (621)
T ss_pred             ccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence            76542 22223445666677777532  2568999999999999999998643          24689999999999999


Q ss_pred             HhCCCCCCCHHHHHHHHHcccccCccccCCC--CC-CCCccc----cc---hhhHhhhhhhh
Q 026025          189 IAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EK-LPDVGI----FS---QPNLMMEHSCR  240 (244)
Q Consensus       189 ~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~~-~~d~~y----s~---~~l~~l~~~~~  240 (244)
                      ..+..+...++++++||.++|.++|||...+  +. .|-.||    .|   |||.+|+.|++
T Consensus       560 ~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~Y~~Y~~~fpl~ALg~y~~  621 (621)
T TIGR01787       560 AAGEADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLKYTNYRNIFPLWALGRYRQ  621 (621)
T ss_pred             HcCccchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceecccccchhhHHHHHHHHhC
Confidence            8886555578999999999999999996533  21 223343    22   99999999864

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.92  E-value=1.5e-23  Score=185.32  Aligned_cols=212  Identities=24%  Similarity=0.259  Sum_probs=159.5

Q ss_pred             cHHHHHHHHHHcc--------------cCCCCccccccc--cchHHHHHHHHHHHHhhCCCC-------CcCHHHHHHHH
Q 026025            5 AADKHVKYIISVE--------------KKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWI   61 (244)
Q Consensus         5 ~~~~~~~yl~~~q--------------~~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~-------~~~~~~~i~~l   61 (244)
                      ..+|+++||.+.|              .++|+|.+....  .++...|-+++.+|..++...       ....+++++||
T Consensus        47 ~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L  126 (348)
T cd02889          47 ALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWL  126 (348)
T ss_pred             HHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHH
Confidence            3579999999999              688988764322  233335777777777666432       23577899999


Q ss_pred             HhcccCCCCcCCCCC-------------------CCCchhhHHHHHHHHHHhcCCCc-------cCHHHHHHHHHhccCC
Q 026025           62 LKCQDESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVDI-------LDADKVSNYIVGLQNE  115 (244)
Q Consensus        62 ~~~q~~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~~-------~~~~~~~~~l~~~q~~  115 (244)
                      .++|++||||.....                   ..+++..|.+++.+|..++....       ..++++++||.+.|++
T Consensus       127 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~  206 (348)
T cd02889         127 LSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEP  206 (348)
T ss_pred             HHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999985422                   23567889999999988765322       1367899999999999


Q ss_pred             CCCccCCCCCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCC----------CCCCcchhHHHHHH
Q 026025          116 DGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCV  184 (244)
Q Consensus       116 dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~~~T~~al  184 (244)
                      ||+|.+... ..+...|+.++.+|...|.. ....++++++||+++|++||||+..          ++..+++..|.++|
T Consensus       207 dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al  285 (348)
T cd02889         207 DGSWYGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWAL  285 (348)
T ss_pred             CCCccccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHH
Confidence            999975432 23333455566667666652 3456789999999999999999863          24568889999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHcccccCccccC
Q 026025          185 GALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (244)
Q Consensus       185 ~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~  217 (244)
                      .+|...+..+...++++++||.++|+++|||..
T Consensus       286 ~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~  318 (348)
T cd02889         286 LALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ  318 (348)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence            999888776556688999999999999999976

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.91  E-value=2.2e-23  Score=184.24  Aligned_cols=229  Identities=17%  Similarity=0.176  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcc--------------cCCC
Q 026025            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQ--------------DESG   69 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q--------------~~dG   69 (244)
                      +++.++||.+.|++||+|....   +++..|.+++.+|...+..  .....+++++||.+.|              .++|
T Consensus         1 ~~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G   77 (348)
T cd02889           1 IRRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG   77 (348)
T ss_pred             CchHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence            3688999999999999998654   7788899999999888863  3346889999999999              6889


Q ss_pred             CcCCCCC--CCCchhhHHHHHHHHHHhcCCC-------ccCHHHHHHHHHhccCCCCCccCCCC----------------
Q 026025           70 GFAGNIG--HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIW----------------  124 (244)
Q Consensus        70 gf~~~~~--~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~q~~dGgf~~~~~----------------  124 (244)
                      ||+....  ..++...|..++.+|..++...       .-.++++++||.++|++||+|.....                
T Consensus        78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~  157 (348)
T cd02889          78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGD  157 (348)
T ss_pred             cCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcC
Confidence            9875432  2355668888888887766542       12368899999999999999974211                


Q ss_pred             ---CCCChhhHHHHHHHHHhhccCCh-------hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-
Q 026025          125 ---GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-  193 (244)
Q Consensus       125 ---~~~d~~~ty~al~~l~~l~~~~~-------~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-  193 (244)
                         ..+++..|..++.+|..++....       ..++++++||+++|++||||.... ...+.+.|++++.+|..++.. 
T Consensus       158 ~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~  236 (348)
T cd02889         158 IMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDE  236 (348)
T ss_pred             CccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCc
Confidence               12345557777887777775322       357899999999999999996433 235667788899999888763 


Q ss_pred             CCCCHHHHHHHHHcccccCccccCC----------CCCCCCccccchhhHhhhhh
Q 026025          194 HHVDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       194 ~~~~~~~~~~wL~~~Q~~~GGf~~~----------~~~~~d~~ys~~~l~~l~~~  238 (244)
                      ....++++++||+++|.++|||...          +...+|++++.+++..|...
T Consensus       237 ~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~  291 (348)
T cd02889         237 NSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAA  291 (348)
T ss_pred             CcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhc
Confidence            2345789999999999999999763          23467888888888888654

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.89  E-value=2.7e-22  Score=160.23  Aligned_cols=223  Identities=14%  Similarity=0.173  Sum_probs=166.5

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHh-cccCCCCcCCC-------
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK-CQDESGGFAGN-------   74 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~-~q~~dGgf~~~-------   74 (244)
                      -++.++.++||.+.|++||+|++...-+..+..||+|+.++.+||.++| .++++++||.+ +|...+|+...       
T Consensus         5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~evP-r~EktiefL~d~~qt~~~~~a~~~~~l~~l   83 (274)
T COG1689           5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEVP-RKEKTIEFLYDQMQTAGVGVAMAIEFLRIL   83 (274)
T ss_pred             hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcCc-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            3678999999999999999999877655568999999999999999876 79999999988 45544443211       


Q ss_pred             ---------------------------------CCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccC
Q 026025           75 ---------------------------------IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG  121 (244)
Q Consensus        75 ---------------------------------~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~  121 (244)
                                                       .++...+..||+++.+|.+.+..   ..+++..|+.+-|+++|++.+
T Consensus        84 g~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~  160 (274)
T COG1689          84 GAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDA  160 (274)
T ss_pred             cccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccc
Confidence                                             01223467899999999887631   246788899999998876654


Q ss_pred             CCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCC-CcchhHHHHHHHHHHHhCCCCCCCHHH
Q 026025          122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDL  200 (244)
Q Consensus       122 ~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~-~~~~~~T~~al~aL~~l~~~~~~~~~~  200 (244)
                      ---.-+.+..||.|+-+|...+     ..+.+..|-.+|-. +|||...|++ +|....||+|+.+|.+|+..  -.+++
T Consensus       161 YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe~~c~~-~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~  232 (274)
T COG1689         161 YGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFELCCGD-WGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISD  232 (274)
T ss_pred             cccCCcchHHHHHHHHhhcccc-----chHHHHhHHhcccc-CCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchH
Confidence            3223345677776655443332     45667777777764 7999999986 78899999999999999975  44789


Q ss_pred             HHHHHHcccccCccccCCC-CCCCCccccchhhHhhhh
Q 026025          201 LGWWLCERQVKSGGLNGRP-EKLPDVGIFSQPNLMMEH  237 (244)
Q Consensus       201 ~~~wL~~~Q~~~GGf~~~~-~~~~d~~ys~~~l~~l~~  237 (244)
                      .++||.+.|+++|||+... .-....-++|.++..|.-
T Consensus       233 ~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~  270 (274)
T COG1689         233 HIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLAS  270 (274)
T ss_pred             HHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHH
Confidence            9999999999999998754 234444556655555543

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.87  E-value=5.2e-22  Score=147.72  Aligned_cols=109  Identities=34%  Similarity=0.622  Sum_probs=91.2

Q ss_pred             HHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHH--HHHHHhccCCCCCccCCC-CCCCChhhHHH
Q 026025           58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV--SNYIVGLQNEDGSFSGDI-WGEVDTRFSYI  134 (244)
Q Consensus        58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~--~~~l~~~q~~dGgf~~~~-~~~~d~~~ty~  134 (244)
                      |+||+++|++||||+.. +..+++..|+.|+.+|..++...  +++++  ++||.++|++||||...+ ..++|+..|++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~   77 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV   77 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence            68999999999999988 78999999999999999887644  47888  999999999999999988 45678999999


Q ss_pred             HHHHHHhhccCCh-hhHHHHHHHHHhcCCCCCCCCC
Q 026025          135 AICCLSILQRLDK-INVDKAVEYIVSCKNLDGGFGC  169 (244)
Q Consensus       135 al~~l~~l~~~~~-~~~e~~~~~i~~~Q~~dGGf~~  169 (244)
                      +++++.+++.... ..++++++||+++|++||||++
T Consensus        78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y  113 (113)
T PF13249_consen   78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY  113 (113)
T ss_dssp             HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence            9999999987542 6789999999999999999974

...

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.85  E-value=4.3e-20  Score=174.17  Aligned_cols=231  Identities=16%  Similarity=0.138  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHhccc--------------
Q 026025            6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQD--------------   66 (244)
Q Consensus         6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~---~~~~~~i~~l~~~q~--------------   66 (244)
                      ..+|+++|.+..-  ++|+...... .+..+.|-+++.+|.-.|...+   ...+++.+||+++|.              
T Consensus       278 ~~k~l~~l~~~~~~~~~~g~~~q~~-~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~  356 (634)
T TIGR03463       278 VAAHLEGLEDYRYEDDDRGLRYNGY-NSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP  356 (634)
T ss_pred             HHHHHHHHHhhEEEcCCCCEEEeeC-CCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence            5789999998764  4533322222 2445889999999976663221   246799999999994              


Q ss_pred             CCCCcCCCC--CCCCchhhHHHHHHHHHHhcCC--------CccCHHHHHHHHHhccCCCCCccCCCC------------
Q 026025           67 ESGGFAGNI--GHDPHVLYTLSAVQVLALFDKV--------DILDADKVSNYIVGLQNEDGSFSGDIW------------  124 (244)
Q Consensus        67 ~dGgf~~~~--~~~~~~~~T~~al~~L~~l~~~--------~~~~~~~~~~~l~~~q~~dGgf~~~~~------------  124 (244)
                      +.|||+...  ...|+...|..+|.+|..+...        +...++++++||.++|++||||+.-..            
T Consensus       357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~  436 (634)
T TIGR03463       357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP  436 (634)
T ss_pred             CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence            568887763  4567888999888887765421        111357899999999999999983210            


Q ss_pred             ---------CCCChhhHHHHHHHHHhhccCCh--------hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 026025          125 ---------GEVDTRFSYIAICCLSILQRLDK--------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL  187 (244)
Q Consensus       125 ---------~~~d~~~ty~al~~l~~l~~~~~--------~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL  187 (244)
                               ..+.+-.|-.++.+|..++...+        ..++++++||++.|++||||...-+ ....+.|++++.+|
T Consensus       437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL  515 (634)
T TIGR03463       437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL  515 (634)
T ss_pred             HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence                     11122334445555555543221        2478999999999999999965433 45666899999999


Q ss_pred             HHhCCC-CCCCHHHHHHHHHcccccCccccCCCC----------CCCCccccchhhHhhhhh
Q 026025          188 AIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPE----------KLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       188 ~~l~~~-~~~~~~~~~~wL~~~Q~~~GGf~~~~~----------~~~d~~ys~~~l~~l~~~  238 (244)
                      ..++.. +...++++++||+++|++||||+....          ...+...|.|++.+|...
T Consensus       516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~  577 (634)
T TIGR03463       516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEA  577 (634)
T ss_pred             HHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHc
Confidence            998863 345589999999999999999976432          245556677888888654

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.84  E-value=1.3e-19  Score=171.84  Aligned_cols=231  Identities=16%  Similarity=0.130  Sum_probs=167.4

Q ss_pred             HHHHHHHHHHcc--cCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccc--------------C
Q 026025            6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD--------------E   67 (244)
Q Consensus         6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~--------------~   67 (244)
                      ..+|++++.+..  .+||.+... ...+.++.|-+++.+|.-.|..  .....+++++||.+.|.              +
T Consensus       280 ~~~~l~~l~~~~~~~~~g~~~~~-~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~  358 (634)
T cd02892         280 FKRHLERIDDFLWLGPEGMKMCQ-TNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR  358 (634)
T ss_pred             HHHHHHHHHhcEEEecCCcEEEc-CCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC
Confidence            468888888855  467765332 2356799999999999777753  23357899999999995              4


Q ss_pred             CCCcCCC--CCCCCchhhHHHHHHHHHHhcCCC----cc---CHHHHHHHHHhccCCCCCccCC-CC-------------
Q 026025           68 SGGFAGN--IGHDPHVLYTLSAVQVLALFDKVD----IL---DADKVSNYIVGLQNEDGSFSGD-IW-------------  124 (244)
Q Consensus        68 dGgf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~---~~~~~~~~l~~~q~~dGgf~~~-~~-------------  124 (244)
                      .|||+..  +...|++..|..++.+|..++...    .+   .++++++||.++|++||||... +.             
T Consensus       359 ~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e  438 (634)
T cd02892         359 KGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFE  438 (634)
T ss_pred             CCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchh
Confidence            5777643  234577889999999888776432    12   3678999999999999999731 11             


Q ss_pred             -------CCCChhhHHHHHHHHHhhccCCh-------hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHh
Q 026025          125 -------GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (244)
Q Consensus       125 -------~~~d~~~ty~al~~l~~l~~~~~-------~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l  190 (244)
                             ..+.+..|..++.+|..++...+       ..++++++||+++|++||||.... +....+.|++++.+|..+
T Consensus       439 ~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~  517 (634)
T cd02892         439 DFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAA  517 (634)
T ss_pred             hhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHh
Confidence                   01234457888888888775432       357899999999999999996543 346677899999999998


Q ss_pred             CCC--CCCCHHHHHHHHHcccccCccccCCCC----------CCCCccccchhhHhhhhh
Q 026025          191 GAL--HHVDKDLLGWWLCERQVKSGGLNGRPE----------KLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       191 ~~~--~~~~~~~~~~wL~~~Q~~~GGf~~~~~----------~~~d~~ys~~~l~~l~~~  238 (244)
                      +..  ....++++++||+++|+++|||+..+.          ..+++..+.|++..|...
T Consensus       518 G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~  577 (634)
T cd02892         518 GEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAA  577 (634)
T ss_pred             CCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHc
Confidence            863  234678999999999999999975322          234456666777777543

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.84  E-value=1e-20  Score=140.74  Aligned_cols=108  Identities=29%  Similarity=0.450  Sum_probs=90.9

Q ss_pred             HHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHH--HHHHHhcCCCCCCCCCCC-CCCcchhHHHH
Q 026025          106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA--VEYIVSCKNLDGGFGCTP-GGESHSGQIFC  182 (244)
Q Consensus       106 ~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~--~~~i~~~Q~~dGGf~~~p-~~~~~~~~T~~  182 (244)
                      |+||.++|++||||... ..++++..|+.++.+|..++...  +.+++  ++||+++|++||||...| +.+++..+|++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~   77 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV   77 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence            68999999999999987 67789999999999999998633  57888  999999999999999998 46789999999


Q ss_pred             HHHHHHHhCCCCC-CCHHHHHHHHHcccccCcccc
Q 026025          183 CVGALAIAGALHH-VDKDLLGWWLCERQVKSGGLN  216 (244)
Q Consensus       183 al~aL~~l~~~~~-~~~~~~~~wL~~~Q~~~GGf~  216 (244)
                      ++++|.+++..+. ..++++++||+++|+++|||+
T Consensus        78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~  112 (113)
T PF13249_consen   78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG  112 (113)
T ss_dssp             HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999987554 678999999999999999996

...

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.83  E-value=4.8e-19  Score=166.99  Aligned_cols=232  Identities=17%  Similarity=0.069  Sum_probs=164.5

Q ss_pred             HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccc-------------CCCC
Q 026025            6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQD-------------ESGG   70 (244)
Q Consensus         6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~-------------~dGg   70 (244)
                      +.+|+++|++... .+|++..... .+.+|.|.+++.+|...|... ....+++.+||+++|-             +.||
T Consensus       289 ~~~~l~~l~~~~~~~~~g~~~~~~-~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GG  367 (635)
T TIGR01507       289 IKLGWEGIDLYGVELDDSWMFQAC-VSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGG  367 (635)
T ss_pred             HHHHHHHHHHheEecCCceEecCC-CCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCc
Confidence            5679999987544 4565543333 468999999999998888432 2357899999999973             3588


Q ss_pred             cCCC--CCCCCchhhHHHHHHHHHHhcCCC----ccCHHHHHHHHHhccCCCCCccCCC------------CC-------
Q 026025           71 FAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDI------------WG-------  125 (244)
Q Consensus        71 f~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~q~~dGgf~~~~------------~~-------  125 (244)
                      |+..  +...|++..|..++.+|..++..+    ...++++++||.++|++||||..-.            .+       
T Consensus       368 W~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D  447 (635)
T TIGR01507       368 WAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTD  447 (635)
T ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccC
Confidence            7765  344689999999999998764211    1247889999999999999996411            00       


Q ss_pred             CCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-CCCCHHHHHH
Q 026025          126 EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGW  203 (244)
Q Consensus       126 ~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-~~~~~~~~~~  203 (244)
                      .+++-.|-.++.+|...+.. ....++++++||++.|++||||-..- +..+.+.|..++.+|...+.. ....++++++
T Consensus       448 ~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~w-g~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~  526 (635)
T TIGR01507       448 PPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRW-GVNYLYGTGAVLSALKAVGIDTREPYIQKALA  526 (635)
T ss_pred             CCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCC-CCccccHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            12222344455555555432 24468899999999999999984332 345677888899999887652 2345889999


Q ss_pred             HHHcccccCccccCCCC----------CCCCccccchhhHhhhhhh
Q 026025          204 WLCERQVKSGGLNGRPE----------KLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       204 wL~~~Q~~~GGf~~~~~----------~~~d~~ys~~~l~~l~~~~  239 (244)
                      ||+++|++||||+....          ...|..-|.|++.+|-...
T Consensus       527 wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag  572 (635)
T TIGR01507       527 WLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAG  572 (635)
T ss_pred             HHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhC
Confidence            99999999999974321          2345666779988886654

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.79  E-value=3.8e-18  Score=160.77  Aligned_cols=230  Identities=17%  Similarity=0.109  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHc--ccCCCCccccccccchHHHHHHHHHHHHhhCC---C-CCcCHHHHHHHHHhcccCC-----------
Q 026025            6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGK---L-DAVDEEDVISWILKCQDES-----------   68 (244)
Q Consensus         6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~---~-~~~~~~~~i~~l~~~q~~d-----------   68 (244)
                      ..+|++.|++.  ..+||.+. .. -.+.++.|-+++.+|.-.|.   + .....+++++||.++|..+           
T Consensus       269 ~~~~l~~l~~~~~~~~dg~~~-q~-~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~  346 (621)
T TIGR01787       269 FQKHLQRIDDYLWLQLDGMKM-QG-TGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRH  346 (621)
T ss_pred             HHHHHHHHhhcEEEeCCccEE-ec-CCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCC
Confidence            46888888876  45676542 11 15778999999999976663   2 1235789999999999866           


Q ss_pred             ----CCcCCC--CCCCCchhhHHHHHHHHHHhcC-CCc---cCHHHHHHHHHhccCCCCCccCCC-C-------------
Q 026025           69 ----GGFAGN--IGHDPHVLYTLSAVQVLALFDK-VDI---LDADKVSNYIVGLQNEDGSFSGDI-W-------------  124 (244)
Q Consensus        69 ----Ggf~~~--~~~~~~~~~T~~al~~L~~l~~-~~~---~~~~~~~~~l~~~q~~dGgf~~~~-~-------------  124 (244)
                          |||+..  ....|++..|..++.++.++.. .+.   ..++++++||.+.|++||||.... .             
T Consensus       347 ~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e  426 (621)
T TIGR01787       347 NLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSE  426 (621)
T ss_pred             CCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchh
Confidence                666544  2345677777777766544432 112   235789999999999999997421 0             


Q ss_pred             -------CCCChhhHHHHHHHHHhhccCC---hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Q 026025          125 -------GEVDTRFSYIAICCLSILQRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH  194 (244)
Q Consensus       125 -------~~~d~~~ty~al~~l~~l~~~~---~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~  194 (244)
                             ..+....|..++.+|..++...   ...++++++||+++|++||+|..+-+ ....+.|.+++.+|..++...
T Consensus       427 ~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~  505 (621)
T TIGR01787       427 VFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTY  505 (621)
T ss_pred             hhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcc
Confidence                   0111234666777776665311   24689999999999999999975433 344566889999999988642


Q ss_pred             C--CCHHHHHHHHHcccccCccccCCCC----------CCCCccccchhhHhhhhh
Q 026025          195 H--VDKDLLGWWLCERQVKSGGLNGRPE----------KLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       195 ~--~~~~~~~~wL~~~Q~~~GGf~~~~~----------~~~d~~ys~~~l~~l~~~  238 (244)
                      .  ..++++++||+++|+++|||+....          ..+|+..+.|+|.+|-..
T Consensus       506 ~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~a  561 (621)
T TIGR01787       506 RNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAA  561 (621)
T ss_pred             cCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence            2  4478999999999999999975432          245677777888887654

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>PLN02993 lupeol synthase

Probab=99.78  E-value=7.7e-18  Score=159.59  Aligned_cols=208  Identities=17%  Similarity=0.115  Sum_probs=148.9

Q ss_pred             cchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcccC-----C----------CCcCCC--CCCCCchhhHHHHHHH
Q 026025           30 HLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDE-----S----------GGFAGN--IGHDPHVLYTLSAVQV   90 (244)
Q Consensus        30 ~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~~-----d----------Ggf~~~--~~~~~~~~~T~~al~~   90 (244)
                      .+.+|.|.+++.+|.--|..  .....+++.+||++.|-.     |          |||+..  ....|+...|..++.+
T Consensus       415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka  494 (763)
T PLN02993        415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC  494 (763)
T ss_pred             CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence            57899999999999877743  234688999999998862     2          777655  4467888999998876


Q ss_pred             HHHhcCCC------cc---CHHHHHHHHHhccCCCCCccCCC------------------CCCCChhhHHH---HHHHHH
Q 026025           91 LALFDKVD------IL---DADKVSNYIVGLQNEDGSFSGDI------------------WGEVDTRFSYI---AICCLS  140 (244)
Q Consensus        91 L~~l~~~~------~~---~~~~~~~~l~~~q~~dGgf~~~~------------------~~~~d~~~ty~---al~~l~  140 (244)
                      +.++....      .+   .+.++++||.+.|+.||||..-.                  +-..|..+++|   ++.+|.
T Consensus       495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~  574 (763)
T PLN02993        495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV  574 (763)
T ss_pred             HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence            54443221      12   25789999999999999987421                  01123445555   444454


Q ss_pred             hhccCC--------hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCC--CCHHHHHHHHHcccc
Q 026025          141 ILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQV  210 (244)
Q Consensus       141 ~l~~~~--------~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~--~~~~~~~~wL~~~Q~  210 (244)
                      +++...        ...++++++||++.|++||||..+ .+....+.|++||.+|..++....  ..++++++||+++|+
T Consensus       575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~  653 (763)
T PLN02993        575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR  653 (763)
T ss_pred             HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence            444311        235789999999999999999764 345677789999999999887432  468999999999999


Q ss_pred             cCccccCCCCC------------CCCccccchhhHhhhhh
Q 026025          211 KSGGLNGRPEK------------LPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       211 ~~GGf~~~~~~------------~~d~~ys~~~l~~l~~~  238 (244)
                      +||||+.....            .+.+.-+-|++..|...
T Consensus       654 ~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~a  693 (763)
T PLN02993        654 DDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHA  693 (763)
T ss_pred             CCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHc
Confidence            99999874322            23335555888888665

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.77  E-value=1.2e-17  Score=144.74  Aligned_cols=197  Identities=15%  Similarity=0.096  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCC-------
Q 026025            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI-------   75 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~-------   75 (244)
                      +++.++.+.+.|++||+|..|...++.+|.|.+++.+|......   ++...+++++||.+.|++||+|....       
T Consensus        54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m  133 (297)
T cd02896          54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM  133 (297)
T ss_pred             HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence            34556666778899999999987789999999999999877643   22357789999999999999998652       


Q ss_pred             --C---CCCchhhHHHHHHHHHHhcCCC-------ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhc
Q 026025           76 --G---HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (244)
Q Consensus        76 --~---~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~  143 (244)
                        +   .++++..|.+++.+|...+...       ...++++++||.+.+.+          ..++-.+.-+.-+|.+.|
T Consensus       134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~  203 (297)
T cd02896         134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD  203 (297)
T ss_pred             cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence              1   1367788899998887765422       12468899999997753          011211222223344444


Q ss_pred             cCChhhHHHHHHHHHhcCCCCCCCCCC---------CC--CCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccC
Q 026025          144 RLDKINVDKAVEYIVSCKNLDGGFGCT---------PG--GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS  212 (244)
Q Consensus       144 ~~~~~~~e~~~~~i~~~Q~~dGGf~~~---------p~--~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~  212 (244)
                      .   ...+++.++|.++|+.|||++..         +.  ...++..|.|||-++...+.  .......++||.+.|+..
T Consensus       204 ~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~--~~~a~~iv~WL~~qr~~~  278 (297)
T cd02896         204 S---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD--IEYANPIARWLTEQRNYG  278 (297)
T ss_pred             C---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC--chhHHHHHHHHHhcCCCC
Confidence            3   26688999999999999998752         11  23478899999988776663  446788999999999999


Q ss_pred             ccccC
Q 026025          213 GGLNG  217 (244)
Q Consensus       213 GGf~~  217 (244)
                      |||..
T Consensus       279 Ggf~s  283 (297)
T cd02896         279 GGFGS  283 (297)
T ss_pred             CCeeh
Confidence            99964

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.76  E-value=6.8e-17  Score=139.83  Aligned_cols=213  Identities=12%  Similarity=0.058  Sum_probs=144.9

Q ss_pred             HHHHHHHHHH-------cccCCCCccccccc--cchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcccCCCCcCC
Q 026025            6 ADKHVKYIIS-------VEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG   73 (244)
Q Consensus         6 ~~~~~~yl~~-------~q~~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q~~dGgf~~   73 (244)
                      ++++.+||.+       .|++||+|..|+..  ++.++.|.+++.+|.......   ....+++++||.+.|++||||..
T Consensus        44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~  123 (292)
T cd02897          44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE  123 (292)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence            3566667764       79999999988654  788999999999998876422   23578899999999999999986


Q ss_pred             CC---------CCCCchhhHHHHHHHHHHhcCCC-ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhc
Q 026025           74 NI---------GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (244)
Q Consensus        74 ~~---------~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~  143 (244)
                      ..         +..+.+..|..++.+|...+..+ ...++++++||.+.+.+          ..++-.+..+..+|.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~  193 (292)
T cd02897         124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAG  193 (292)
T ss_pred             CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcC
Confidence            42         12355678889999888776432 23468999999997764          112222333445555556


Q ss_pred             cCChhhHHHHHHHHHh---cCCCCCCCCCC----------CC-CCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc
Q 026025          144 RLDKINVDKAVEYIVS---CKNLDGGFGCT----------PG-GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ  209 (244)
Q Consensus       144 ~~~~~~~e~~~~~i~~---~Q~~dGGf~~~----------p~-~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q  209 (244)
                      ..   ..+++++.+.+   .++.+|+|+..          +. ..+++..|.+++.+|...+..+.....+.++||.+.|
T Consensus       194 ~~---~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q  270 (292)
T cd02897         194 SE---KRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQR  270 (292)
T ss_pred             Cc---cHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcC
Confidence            21   23445554443   45566777642          12 2468889999998887776322345677889999999


Q ss_pred             ccCccccCCCCCCCCccccchhhHhhhhh
Q 026025          210 VKSGGLNGRPEKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       210 ~~~GGf~~~~~~~~d~~ys~~~l~~l~~~  238 (244)
                      +.+|||..--       -+.++|.+|..|
T Consensus       271 ~~~Ggf~sTQ-------dt~~al~AL~~y  292 (292)
T cd02897         271 NSLGGFSSTQ-------DTVVALQALAKY  292 (292)
T ss_pred             CCCCCcccHH-------HHHHHHHHHHcC
Confidence            9999996322       244667666543

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PLN03012 Camelliol C synthase

Probab=99.72  E-value=1.4e-16  Score=150.78  Aligned_cols=165  Identities=18%  Similarity=0.178  Sum_probs=127.2

Q ss_pred             cHHHHHHHHHHcccCCCCccccc---------------------cccchHHHHHHHHHHHHhhCCCC--------CcCHH
Q 026025            5 AADKHVKYIISVEKKKDSFESVV---------------------MEHLRLNGAYWGLTTLDILGKLD--------AVDEE   55 (244)
Q Consensus         5 ~~~~~~~yl~~~q~~dg~~~~~~---------------------~~~~~~~~~y~al~~l~llg~~~--------~~~~~   55 (244)
                      ...+++++|.++|++||||..+-                     .|++....|--+|.+|.+++...        ....+
T Consensus       514 ~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~  593 (759)
T PLN03012        514 QLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIK  593 (759)
T ss_pred             HHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHH
Confidence            35689999999999999984321                     13444444777888888887532        12467


Q ss_pred             HHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCC--CccCHHHHHHHHHhccCCCCCccCCCC---------
Q 026025           56 DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQNEDGSFSGDIW---------  124 (244)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~--~~~~~~~~~~~l~~~q~~dGgf~~~~~---------  124 (244)
                      ++++||++.|++||||.+.-+. ..+..|.+||.+|...+..  +...++++++||++.|++||||+.+..         
T Consensus       594 rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~  672 (759)
T PLN03012        594 KAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA  672 (759)
T ss_pred             HHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence            8999999999999999876542 4556899999999988753  223489999999999999999987532         


Q ss_pred             ---CCCChhhHHHHHHHHHhhccCC--hhhHHHHHHHHHhcCCCCCCCCCC
Q 026025          125 ---GEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCT  170 (244)
Q Consensus       125 ---~~~d~~~ty~al~~l~~l~~~~--~~~~e~~~~~i~~~Q~~dGGf~~~  170 (244)
                         +.+.+.-|.||+.+|...|...  +..++++++||.+.|.+||+|...
T Consensus       673 ~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~  723 (759)
T PLN03012        673 QEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQ  723 (759)
T ss_pred             CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCc
Confidence               2366678899999988888643  346899999999999999999653

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.59  E-value=2.9e-14  Score=114.41  Aligned_cols=151  Identities=18%  Similarity=0.193  Sum_probs=122.8

Q ss_pred             cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHH
Q 026025           30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI  109 (244)
Q Consensus        30 ~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l  109 (244)
                      ++.+..|||+..+|.+.|...   .+++-+||.+.|+++|++.+.-...|+...||.|+-.|...     ..++.+..|=
T Consensus       120 ~~~Le~ty~~~~~l~~~n~~~---~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k-----~~~~~v~~Fe  191 (274)
T COG1689         120 ATPLEATYWMMSALNMVNYEY---LEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSK-----GPKEEVRHFE  191 (274)
T ss_pred             CchHHHHHHHHHHHHHhCcCc---hHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccc-----cchHHHHhHH
Confidence            456788999999999998653   56788888899999988877766788999999888877533     3356666665


Q ss_pred             HhccCCCCCccCCCCC-CCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCC-CCCcchhHHHHHHHHH
Q 026025          110 VGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTP-GGESHSGQIFCCVGAL  187 (244)
Q Consensus       110 ~~~q~~dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p-~~~~~~~~T~~al~aL  187 (244)
                      .+| -++|||...|++ ++-+..||.|+.++.+|+..  ..+.+.++||.+.||+||||+.+. .+.|...+||.|+++|
T Consensus       192 ~~c-~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L  268 (274)
T COG1689         192 LCC-GDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASL  268 (274)
T ss_pred             hcc-ccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHH
Confidence            554 467999988876 56688999999999999863  456778999999999999998875 4679999999999999


Q ss_pred             HHhC
Q 026025          188 AIAG  191 (244)
Q Consensus       188 ~~l~  191 (244)
                      +.+.
T Consensus       269 ~~l~  272 (274)
T COG1689         269 ASLH  272 (274)
T ss_pred             HHHh
Confidence            8874

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.56  E-value=5.5e-14  Score=129.23  Aligned_cols=201  Identities=25%  Similarity=0.275  Sum_probs=145.1

Q ss_pred             HHHHHHHHHhhCCCC------CcCHH---HHHHHHHhcccCCCCcCCCCC---------------------CCCchhhHH
Q 026025           36 AYWGLTTLDILGKLD------AVDEE---DVISWILKCQDESGGFAGNIG---------------------HDPHVLYTL   85 (244)
Q Consensus        36 ~y~al~~l~llg~~~------~~~~~---~~i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~   85 (244)
                      |.=++.++-+++..+      ..+.+   ..++.|+..|..+|||....-                     ..+.+.+|-
T Consensus       487 taEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~  566 (760)
T KOG0497|consen  487 TAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTS  566 (760)
T ss_pred             cHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHH
Confidence            333455555665432      23444   467788999999999976531                     145678999


Q ss_pred             HHHHHHHHhcCCC------cc--CHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHH---HHhhccC--ChhhHHH
Q 026025           86 SAVQVLALFDKVD------IL--DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICC---LSILQRL--DKINVDK  152 (244)
Q Consensus        86 ~al~~L~~l~~~~------~~--~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~---l~~l~~~--~~~~~e~  152 (244)
                      ++|++|......-      .+  .+.+++.||.+.|.+||+|.++++    +|+||...-+   |...|..  +-..+++
T Consensus       567 s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irk  642 (760)
T KOG0497|consen  567 SAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRK  642 (760)
T ss_pred             HHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHH
Confidence            9999998875421      11  257899999999999999999875    7888865443   3333432  2356899


Q ss_pred             HHHHHHhcCCCCCCCCCCC------------CCCcchhHHHHHHHHHHHhCCCC--CCCHHHHHHHHHcccccCccccC-
Q 026025          153 AVEYIVSCKNLDGGFGCTP------------GGESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNG-  217 (244)
Q Consensus       153 ~~~~i~~~Q~~dGGf~~~p------------~~~~~~~~T~~al~aL~~l~~~~--~~~~~~~~~wL~~~Q~~~GGf~~-  217 (244)
                      +++|+++.|++||||+..+            +..+++-.|.+|+.+|.+.++.+  +....|+.+.|...|.++|-|.- 
T Consensus       643 a~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq  722 (760)
T KOG0497|consen  643 ACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ  722 (760)
T ss_pred             HHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence            9999999999999999885            23577889999999999998854  34789999999999999987743 


Q ss_pred             ----CCCCCCCccc-cc---hhhHhhhhhhh
Q 026025          218 ----RPEKLPDVGI-FS---QPNLMMEHSCR  240 (244)
Q Consensus       218 ----~~~~~~d~~y-s~---~~l~~l~~~~~  240 (244)
                          ..++.+=..| +|   +++-+|++|.+
T Consensus       723 ~i~g~f~~~~~~~y~~yr~~F~~waL~~y~~  753 (760)
T KOG0497|consen  723 EIEGVFNKNCMIHYPTYRNIFPIWALGEYRK  753 (760)
T ss_pred             HHHHHhhhhhhhccchhhhhccHHHHHHHHH
Confidence                2233222212 22   88888888765

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.49  E-value=1e-12  Score=113.99  Aligned_cols=170  Identities=18%  Similarity=0.095  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHhccCCCCCccCCC-------
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDI-------  123 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~-------  123 (244)
                      .++.++.++++|++||||+.+....+++..|.+++.+|........++   ++++++||.+.|++||+|....       
T Consensus        54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m  133 (297)
T cd02896          54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM  133 (297)
T ss_pred             HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence            456777888999999999988777889999999999998776543333   6889999999999999998542       


Q ss_pred             -CC----CCChhhHHHHHHHHHhhccCC-------hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 026025          124 -WG----EVDTRFSYIAICCLSILQRLD-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (244)
Q Consensus       124 -~~----~~d~~~ty~al~~l~~l~~~~-------~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~  191 (244)
                       ++    ++++..|-.++.+|...+...       ...++++++||.+++..          ..+++.+..+.-+|.+.+
T Consensus       134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~  203 (297)
T cd02896         134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD  203 (297)
T ss_pred             cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence             01    134444555555555544321       23678999999998853          234555655556677766


Q ss_pred             CCCCCCHHHHHHHHHcccccCccccCCC-----------CCCCCccccchhhHhhh
Q 026025          192 ALHHVDKDLLGWWLCERQVKSGGLNGRP-----------EKLPDVGIFSQPNLMME  236 (244)
Q Consensus       192 ~~~~~~~~~~~~wL~~~Q~~~GGf~~~~-----------~~~~d~~ys~~~l~~l~  236 (244)
                      .   ....++.+||.++|+.+||+..+.           ....++.-+=|+|++|-
T Consensus       204 ~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall  256 (297)
T cd02896         204 S---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALL  256 (297)
T ss_pred             C---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHH
Confidence            4   267889999999999999876432           12235555556666654

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.45  E-value=1.5e-13  Score=84.83  Aligned_cols=44  Identities=45%  Similarity=1.005  Sum_probs=41.9

Q ss_pred             hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 026025          148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (244)
Q Consensus       148 ~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~  191 (244)
                      ++++++++||++||++||||+..|+.++|+++|||++++|.+++
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            36899999999999999999999999999999999999999985

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.43  E-value=1.6e-11  Score=105.37  Aligned_cols=211  Identities=16%  Similarity=0.113  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHcccCCCCccccccc-cchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCC-----
Q 026025            6 ADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIG-----   76 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~-----   76 (244)
                      +++.++.|.+.|++||+|.+|.+. .++++.|.+++.+|...+..   ++...+++++||.+.|++||+|.....     
T Consensus        51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~  130 (282)
T cd02891          51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE  130 (282)
T ss_pred             HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence            567889999999999999999876 78999999999999866532   223478999999999999999987543     


Q ss_pred             ----CCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHH
Q 026025           77 ----HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK  152 (244)
Q Consensus        77 ----~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~  152 (244)
                          ..+....|.+++.+|...+......+.++++||.+....          ..++-....+..+|.+.|.  ....++
T Consensus       131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~~  198 (282)
T cd02891         131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRADE  198 (282)
T ss_pred             hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHHH
Confidence                234556788888888776654334578899999986653          1122222333455556664  122344


Q ss_pred             HHHHHHhcCCCCCCC-------CCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCc
Q 026025          153 AVEYIVSCKNLDGGF-------GCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV  225 (244)
Q Consensus       153 ~~~~i~~~Q~~dGGf-------~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~  225 (244)
                      +++-+...-...+..       ....+.......|.+++.+.  +...+....++.++||.+.+...|+|..       +
T Consensus       199 ~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~s-------T  269 (282)
T cd02891         199 ALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLAL--LKLGDLEEAGPIAKWLAQQRNSGGGFLS-------T  269 (282)
T ss_pred             HHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHH--HhcCChhhHHHHHHHHHHcCCCCCCccc-------H
Confidence            444444432222221       11122333444555554333  3322334568899999986666777642       2


Q ss_pred             cccchhhHhhhh
Q 026025          226 GIFSQPNLMMEH  237 (244)
Q Consensus       226 ~ys~~~l~~l~~  237 (244)
                      .-+.++|.+|..
T Consensus       270 q~t~~al~AL~~  281 (282)
T cd02891         270 QDTVVALQALAA  281 (282)
T ss_pred             HHHHHHHHHHHh
Confidence            345566666653

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.40  E-value=1.5e-13  Score=101.47  Aligned_cols=105  Identities=23%  Similarity=0.349  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHH
Q 026025          102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI  180 (244)
Q Consensus       102 ~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T  180 (244)
                      ++++++||.+.|++||||.....  .+...|++++.+|..++.. ....++++++||+++|++||||+..+.  .+...|
T Consensus         1 i~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t   76 (109)
T PF13243_consen    1 IKRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMT   76 (109)
T ss_dssp             ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred             Ccccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHH
Confidence            36789999999999999987643  4667788888888777753 234679999999999999999998733  334456


Q ss_pred             HHHHHHHHHhCCC-CCCCHHHHHHHHHcccc
Q 026025          181 FCCVGALAIAGAL-HHVDKDLLGWWLCERQV  210 (244)
Q Consensus       181 ~~al~aL~~l~~~-~~~~~~~~~~wL~~~Q~  210 (244)
                      ..++.+|.+.+.. +...++++++||.++|.
T Consensus        77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   77 AAAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            6677777666543 22448899999999874

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.38  E-value=3.1e-11  Score=104.45  Aligned_cols=168  Identities=14%  Similarity=0.090  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhhCCCCCcCHHHHHHHH-------HhcccCCCCcCCCCCC--CCchhhHHHHHHHHHHhcCCCcc---CHH
Q 026025           36 AYWGLTTLDILGKLDAVDEEDVISWI-------LKCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKVDIL---DAD  103 (244)
Q Consensus        36 ~y~al~~l~llg~~~~~~~~~~i~~l-------~~~q~~dGgf~~~~~~--~~~~~~T~~al~~L~~l~~~~~~---~~~  103 (244)
                      ..+++.-|.-.+...+..++++++||       +++|++||||+.+...  .+++.-|.+++.+|........+   .++
T Consensus        26 ~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~  105 (292)
T cd02897          26 NIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQ  105 (292)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHH
Confidence            33444444444433333345555555       4689999999887543  77889999999998876642222   368


Q ss_pred             HHHHHHHhccCCCCCccCCC---------CCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCC
Q 026025          104 KVSNYIVGLQNEDGSFSGDI---------WGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGG  173 (244)
Q Consensus       104 ~~~~~l~~~q~~dGgf~~~~---------~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~  173 (244)
                      ++++||.+.|++||||....         ....++..|-.++.+|...|.. ....++++++||.+.+..          
T Consensus       106 ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------  175 (292)
T cd02897         106 QALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------  175 (292)
T ss_pred             HHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------
Confidence            89999999999999997421         0112233344555556556643 235679999999987753          


Q ss_pred             CcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc---ccCcccc
Q 026025          174 ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ---VKSGGLN  216 (244)
Q Consensus       174 ~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q---~~~GGf~  216 (244)
                      ..+++.+..+..+|.+++.   ...++++++|...+   ...|+|.
T Consensus       176 ~~~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~  218 (292)
T cd02897         176 ISDPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWS  218 (292)
T ss_pred             CCCHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCC
Confidence            3466678778888888872   23456666665543   3345554

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.28  E-value=5.4e-12  Score=77.89  Aligned_cols=44  Identities=39%  Similarity=0.704  Sum_probs=41.8

Q ss_pred             cCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhc
Q 026025          100 LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (244)
Q Consensus       100 ~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~  143 (244)
                      +|++++++||.++|++||||+++|+.++|+.+|||++++|+++|
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999999986

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.27  E-value=6.3e-12  Score=92.77  Aligned_cols=104  Identities=21%  Similarity=0.283  Sum_probs=36.2

Q ss_pred             HHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCC-CccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHH
Q 026025           55 EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY  133 (244)
Q Consensus        55 ~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty  133 (244)
                      +++++||++.|++||+|....  .++...|++++.+|..++.. ....++++++||.++|++||||...+.  .+...|.
T Consensus         2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t~   77 (109)
T PF13243_consen    2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMTA   77 (109)
T ss_dssp             -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHHH
Confidence            678999999999999997552  36688888888888877642 222479999999999999999997632  2233344


Q ss_pred             HHHHHHHhhccC-ChhhHHHHHHHHHhcCC
Q 026025          134 IAICCLSILQRL-DKINVDKAVEYIVSCKN  162 (244)
Q Consensus       134 ~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~  162 (244)
                      .+++++.+.+.. ....++++++||++.|.
T Consensus        78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   78 AAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            455555444432 34568999999998864

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=99.22  E-value=1.8e-10  Score=97.38  Aligned_cols=205  Identities=13%  Similarity=0.109  Sum_probs=130.5

Q ss_pred             HHHHHHcccCCCCcccc-ccccchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHhcccCCCCcCCCCCC--------
Q 026025           10 VKYIISVEKKKDSFESV-VMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQDESGGFAGNIGH--------   77 (244)
Q Consensus        10 ~~yl~~~q~~dg~~~~~-~~~~~~~~~~y~al~~l~llg~~~~---~~~~~~i~~l~~~q~~dGgf~~~~~~--------   77 (244)
                      .+-+.+.+++||+|..+ ...++.+|.|.|++..|........   ...+++++||.+.|++||.|......        
T Consensus         3 Yqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~   82 (246)
T PF07678_consen    3 YQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGG   82 (246)
T ss_dssp             HHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGG
T ss_pred             hHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCC
Confidence            44566778999999988 6678999999999999998876532   24678999999999999999765321        


Q ss_pred             -CCchhhHHHHHHHHHHhcCCC-------ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH-HHHH--HHhhccCC
Q 026025           78 -DPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AICC--LSILQRLD  146 (244)
Q Consensus        78 -~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~-al~~--l~~l~~~~  146 (244)
                       ...+..|.+.+.+|...++..       ...++++++||.+....             ....|. |+.+  |.+.+  +
T Consensus        83 ~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~-------------~~~~Y~lAl~aYAL~la~--~  147 (246)
T PF07678_consen   83 VEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN-------------IQDPYTLALVAYALALAG--D  147 (246)
T ss_dssp             GTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC-------------TSSHHHHHHHHHHHHHTT--T
T ss_pred             CCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc-------------cCCHHHHHHHHHHHHhhc--c
Confidence             224556666666665444221       12368899999775211             122332 2222  23333  3


Q ss_pred             hhhHHHHHHHHHhcCCCCCCCCCCCC--------------CCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccC
Q 026025          147 KINVDKAVEYIVSCKNLDGGFGCTPG--------------GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS  212 (244)
Q Consensus       147 ~~~~e~~~~~i~~~Q~~dGGf~~~p~--------------~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~  212 (244)
                      ....+++.+-|.+....+|+..+-+.              ...++..|.+|+-++...  .+.......++||.+.|+..
T Consensus       148 ~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~  225 (246)
T PF07678_consen  148 SPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSG  225 (246)
T ss_dssp             CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTT
T ss_pred             cchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCC
Confidence            45667788888876655555422211              113567899998666555  23345678999999999999


Q ss_pred             ccccCCCCCCCCccccchhhHhhhhh
Q 026025          213 GGLNGRPEKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       213 GGf~~~~~~~~d~~ys~~~l~~l~~~  238 (244)
                      |||+.--       -+..+|.+|..|
T Consensus       226 Ggf~STQ-------dTvvaL~AL~~Y  244 (246)
T PF07678_consen  226 GGFGSTQ-------DTVVALQALAEY  244 (246)
T ss_dssp             SSTSSHH-------HHHHHHHHHHHH
T ss_pred             CccCcHH-------HHHHHHHHHHHH
Confidence            9996421       234556665554

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=99.15  E-value=1.2e-10  Score=106.02  Aligned_cols=217  Identities=18%  Similarity=0.090  Sum_probs=140.2

Q ss_pred             CCCCccccccc--cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCC-------------------C
Q 026025           19 KKDSFESVVME--HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG-------------------H   77 (244)
Q Consensus        19 ~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~-------------------~   77 (244)
                      ..|+|.++.+.  .++...|-=++..+.....  ..+.+.+++||..+|+..|||..++.                   .
T Consensus       248 ~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~--~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~  325 (517)
T COG1657         248 SPGGWGFSNINTGYPDADDTAGVVRALIGVQS--LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVD  325 (517)
T ss_pred             CCCccceeecccCCCCchhhhHHHHHHHhhcc--hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcccccc
Confidence            56777766542  3333334334444433332  23677899999999999999988753                   1


Q ss_pred             CCchhhHHHHHHHHHHhcCCC----ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHh---hccCC--hh
Q 026025           78 DPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSI---LQRLD--KI  148 (244)
Q Consensus        78 ~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~---l~~~~--~~  148 (244)
                      .+.+.+|-..+.+|..++.+.    ...++++++||.+.|.++|.|.+.+.    .+++|.....+..   +|...  ..
T Consensus       326 ~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~  401 (517)
T COG1657         326 PSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEV  401 (517)
T ss_pred             CCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchH
Confidence            233344444444554444332    34588999999999999999988764    5667765544444   44422  34


Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCCCC----------CcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCC
Q 026025          149 NVDKAVEYIVSCKNLDGGFGCTPGG----------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR  218 (244)
Q Consensus       149 ~~e~~~~~i~~~Q~~dGGf~~~p~~----------~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~  218 (244)
                      .+.+++.|+..+|++||||+..-..          .+-...|.||+..+....+.+...++..++.+.+.|.++|-++.+
T Consensus       402 ~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~  481 (517)
T COG1657         402 LVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREA  481 (517)
T ss_pred             HHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccc
Confidence            5789999999999999999876321          233446788887777766654455788999999999887766543


Q ss_pred             C--CCC----CCccc---cchhhHhhhhhhhc
Q 026025          219 P--EKL----PDVGI---FSQPNLMMEHSCRS  241 (244)
Q Consensus       219 ~--~~~----~d~~y---s~~~l~~l~~~~~~  241 (244)
                      +  ++.    .=.+.   .|.|+..|+.+-..
T Consensus       482 ~~eg~~~~~~~~~~~~~~~~~p~~~lg~y~~~  513 (517)
T COG1657         482 EREGGFNCNFAIGYPYYLAYFPIIALGRYGGQ  513 (517)
T ss_pred             eecccCCCCcceeeeeEEeecCchhhcccccc
Confidence            3  211    11111   23778888776543

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.12  E-value=2.7e-09  Score=91.51  Aligned_cols=144  Identities=19%  Similarity=0.111  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHhcccCCCCcCCCCCC-CCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHhccCCCCCccCCCC----
Q 026025           53 DEEDVISWILKCQDESGGFAGNIGH-DPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW----  124 (244)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~-~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~~----  124 (244)
                      .+++++++|.++|++||||+.+++. .++...|.+++.+|........++   ++++++||.+.|.+||+|.....    
T Consensus        50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~  129 (282)
T cd02891          50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR  129 (282)
T ss_pred             HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence            4667899999999999999999887 889999999999998765432233   78899999999999999976432    


Q ss_pred             -----CCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHH
Q 026025          125 -----GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD  199 (244)
Q Consensus       125 -----~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~  199 (244)
                           ..++...|..++.+|...|......++++++||.+....          ..++........+|.+++.  ....+
T Consensus       130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~  197 (282)
T cd02891         130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRAD  197 (282)
T ss_pred             hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHH
Confidence                 123333455566666666654445778999999986642          2333444445566666664  22244


Q ss_pred             HHHHHHHcc
Q 026025          200 LLGWWLCER  208 (244)
Q Consensus       200 ~~~~wL~~~  208 (244)
                      +.++-+...
T Consensus       198 ~~l~~l~~~  206 (282)
T cd02891         198 EALKKLLEA  206 (282)
T ss_pred             HHHHHHHHH
Confidence            555555544

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.06  E-value=5.7e-10  Score=103.16  Aligned_cols=114  Identities=20%  Similarity=0.306  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHcccCCCCcc-ccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcccCCCCcCCCC-------
Q 026025            6 ADKHVKYIISVEKKKDSFE-SVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDESGGFAGNI-------   75 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~-~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~~dGgf~~~~-------   75 (244)
                      ++++++||++.|.+||+|. .|+  ...+.+|.+++.+|.-.|..  +-...+++++||++.|++||||+..+       
T Consensus       591 i~~av~~ie~~Q~~DGSWyGsWg--vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~  668 (760)
T KOG0497|consen  591 IEKAVEFIEKLQLPDGSWYGSWG--VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKR  668 (760)
T ss_pred             HHHHHHHHHHcCCCCCcccchhh--HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCcccc
Confidence            5789999999999999984 454  68888999999999999985  33468899999999999999999874       


Q ss_pred             -----CCCCchhhHHHHHHHHHHhcCCCcc--CHHHHHHHHHhccCCCCCccC
Q 026025           76 -----GHDPHVLYTLSAVQVLALFDKVDIL--DADKVSNYIVGLQNEDGSFSG  121 (244)
Q Consensus        76 -----~~~~~~~~T~~al~~L~~l~~~~~~--~~~~~~~~l~~~q~~dGgf~~  121 (244)
                           |..+++..|..|+.+|.+.+..++.  .+++++..|...|.++|-|..
T Consensus       669 Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpq  721 (760)
T KOG0497|consen  669 YIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQ  721 (760)
T ss_pred             ccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcch
Confidence                 3468999999999999998875443  689999999999999998874

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.58  E-value=6.2e-07  Score=75.79  Aligned_cols=150  Identities=21%  Similarity=0.200  Sum_probs=93.8

Q ss_pred             HHHHHHhcccCCCCcCCC-CCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHhccCCCCCccCCCC-------C
Q 026025           57 VISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW-------G  125 (244)
Q Consensus        57 ~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~q~~dGgf~~~~~-------~  125 (244)
                      +.+-+++.+++||+|+.+ ...++++.-|.+++..|....+.-.+|   +.++++||.+.|++||+|.....       +
T Consensus         2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g   81 (246)
T PF07678_consen    2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG   81 (246)
T ss_dssp             HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG
T ss_pred             chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC
Confidence            345678899999999999 677899999999999999887764444   68899999999999999975311       1


Q ss_pred             --CCChhhHHHHHHHHHhhccC-------ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC
Q 026025          126 --EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV  196 (244)
Q Consensus       126 --~~d~~~ty~al~~l~~l~~~-------~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~  196 (244)
                        ..++..|-.++.+|.-.+..       ....++++++||.+...          ...+++....+--+|.+++  +..
T Consensus        82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~----------~~~~~Y~lAl~aYAL~la~--~~~  149 (246)
T PF07678_consen   82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD----------NIQDPYTLALVAYALALAG--DSP  149 (246)
T ss_dssp             GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG----------CTSSHHHHHHHHHHHHHTT--TCH
T ss_pred             CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc----------ccCCHHHHHHHHHHHHhhc--ccc
Confidence              11222322233333333311       13467899999987621          1233333332223344554  345


Q ss_pred             CHHHHHHHHHcccccCccccCC
Q 026025          197 DKDLLGWWLCERQVKSGGLNGR  218 (244)
Q Consensus       197 ~~~~~~~wL~~~Q~~~GGf~~~  218 (244)
                      ..+.+.+-|.+....+||...+
T Consensus       150 ~~~~~~~~L~~~a~~~~~~~~W  171 (246)
T PF07678_consen  150 QASKLLNKLNSMATTEGGLRYW  171 (246)
T ss_dssp             HHHHHHHHHHCHCEETTTTCEE
T ss_pred             hHHHHHHHHHHhhhhccccCcc
Confidence            5677888888877666665333

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=98.49  E-value=2e-07  Score=85.15  Aligned_cols=170  Identities=21%  Similarity=0.230  Sum_probs=110.6

Q ss_pred             HHHHHHhcccCCCCcCCCC--CCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCC---------
Q 026025           57 VISWILKCQDESGGFAGNI--GHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWG---------  125 (244)
Q Consensus        57 ~i~~l~~~q~~dGgf~~~~--~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~---------  125 (244)
                      ..+|-...+...|||+...  ...++...|-.++..+....  +..+.++.+.|+...|+..|||......         
T Consensus       238 ~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~--~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L  315 (517)
T COG1657         238 YADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQ--SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLL  315 (517)
T ss_pred             hhccccccccCCCccceeecccCCCCchhhhHHHHHHHhhc--chhhHHhhhhHhhhcccccCceeeeccccccHHHhhC
Confidence            3334333344556666554  36788888888888776544  3445677999999999999998742110         


Q ss_pred             -------CCC---hhhHHHHHHHHHhhcc-CC---hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 026025          126 -------EVD---TRFSYIAICCLSILQR-LD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (244)
Q Consensus       126 -------~~d---~~~ty~al~~l~~l~~-~~---~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~  191 (244)
                             ..+   +.-|...+..|..++. ++   ...++++++|+++.|.++|.|-..-+ .-..+.|.-++.+|.+.+
T Consensus       316 ~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~-v~~iY~~s~a~~~l~~~g  394 (517)
T COG1657         316 PPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG-VCYIYGTSGALSALALVG  394 (517)
T ss_pred             CHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE-EEEEEehhhhhhhhhccC
Confidence                   001   1112223333333332 12   35689999999999999998855432 123334555666666666


Q ss_pred             CCC--CCCHHHHHHHHHcccccCccccCCCCCCCCccccc
Q 026025          192 ALH--HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFS  229 (244)
Q Consensus       192 ~~~--~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~  229 (244)
                      ..+  ...+..++.|+..+|+++|||+..-...+|..|++
T Consensus       395 ~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~  434 (517)
T COG1657         395 ETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTG  434 (517)
T ss_pred             ccccchHHHHHHHHHhhhccccCCCccccccccccccccc
Confidence            533  23478899999999999999999888788888777

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=98.02  E-value=9.3e-05  Score=63.42  Aligned_cols=128  Identities=18%  Similarity=0.138  Sum_probs=70.1

Q ss_pred             hhHHHHHHHHHHhcCCC-----ccCHHHHHHHHHhccCCCCCccCCCC-C-CCChhhHHH---HHHHHHhhccC------
Q 026025           82 LYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDGSFSGDIW-G-EVDTRFSYI---AICCLSILQRL------  145 (244)
Q Consensus        82 ~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~q~~dGgf~~~~~-~-~~d~~~ty~---al~~l~~l~~~------  145 (244)
                      ..|...|..|+.+-...     .--..++++||.+.|.++|||..... . ...-.-||.   .+.++.+|..+      
T Consensus        44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~  123 (290)
T TIGR02474        44 GATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDP  123 (290)
T ss_pred             ccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCC
Confidence            46777777776653211     11258899999999999999975321 1 101111221   22333333211      


Q ss_pred             ----C-------hhhHHHHHHHHHhcCCCCCCC----CCCCCC-----------CcchhHHHHHHHHHHHhCCCCCC---
Q 026025          146 ----D-------KINVDKAVEYIVSCKNLDGGF----GCTPGG-----------ESHSGQIFCCVGALAIAGALHHV---  196 (244)
Q Consensus       146 ----~-------~~~~e~~~~~i~~~Q~~dGGf----~~~p~~-----------~~~~~~T~~al~aL~~l~~~~~~---  196 (244)
                          +       ...++|+++||+++|-++||+    +..-..           |+..-.+.-.+..+..|...+.+   
T Consensus       124 ~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~  203 (290)
T TIGR02474       124 FDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAE  203 (290)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHH
Confidence                0       235789999999999888755    332110           22111222223334444333222   


Q ss_pred             ---CHHHHHHHHHccc
Q 026025          197 ---DKDLLGWWLCERQ  209 (244)
Q Consensus       197 ---~~~~~~~wL~~~Q  209 (244)
                         .+++++.|+.+..
T Consensus       204 i~~ai~~A~~W~~~~~  219 (290)
T TIGR02474       204 IKEAIRAGVAWFDTSR  219 (290)
T ss_pred             HHHHHHHHHHHHHHCC
Confidence               3778999998875

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=97.62  E-value=0.00029  Score=60.43  Aligned_cols=112  Identities=13%  Similarity=0.076  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHhcccCCCCcCCCCC----CCCchh----hHHHHHHHHHHhcC----CCc----------cCHHHHHHHHH
Q 026025           53 DEEDVISWILKCQDESGGFAGNIG----HDPHVL----YTLSAVQVLALFDK----VDI----------LDADKVSNYIV  110 (244)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~----~T~~al~~L~~l~~----~~~----------~~~~~~~~~l~  110 (244)
                      ..+++++||++.|+++|||+.+..    +..|+.    .+..+|..|..+..    +..          ..++++++||+
T Consensus        68 A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~IL  147 (290)
T TIGR02474        68 AARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECIL  147 (290)
T ss_pred             HHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            577899999999999999987642    222221    12334445543311    110          12588999999


Q ss_pred             hccCCCCCccCCCCC---------------CCC-hh--hHHHHHHHHHhhccCCh---hhHHHHHHHHHhcCCCC
Q 026025          111 GLQNEDGSFSGDIWG---------------EVD-TR--FSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLD  164 (244)
Q Consensus       111 ~~q~~dGgf~~~~~~---------------~~d-~~--~ty~al~~l~~l~~~~~---~~~e~~~~~i~~~Q~~d  164 (244)
                      +.|..+||+.+.+..               |+. +.  -+-.++..|.-+...++   ..++.+++|+.+.+.++
T Consensus       148 ktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g  222 (290)
T TIGR02474       148 KTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRG  222 (290)
T ss_pred             HhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCC
Confidence            999998876543321               111 11  12222333332322221   25788999999988653

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PLN02279 ent-kaur-16-ene synthase

Probab=97.47  E-value=0.0038  Score=60.85  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=63.1

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCC----CC
Q 026025            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH----DP   79 (244)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~----~~   79 (244)
                      +..+.+++-|++..+.-   +    -.+....|.|+...=+. +..........++||+..|.+||+||..+..    .-
T Consensus        33 ~~~~~~~~~i~~~l~~~---e----~s~s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D  104 (784)
T PLN02279         33 VSFEGTKERIKKMFDKV---E----LSVSSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKD  104 (784)
T ss_pred             ccchhHHHHHHHHhccC---c----CCCchhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHH
Confidence            34466677777665533   1    12445668998766555 3322224678999999999999999865322    23


Q ss_pred             chhhHHHHHHHHHHhcCCCccCHHHHHHHHHh
Q 026025           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVG  111 (244)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~  111 (244)
                      .+.+|.++|.+|.--+..+ ..+++.+.||.+
T Consensus       105 ~ll~TlAcvlAL~~w~~~~-~~~~~gl~fi~~  135 (784)
T PLN02279        105 ALSSTLASILALKKWGVGE-EQINKGLQFIEL  135 (784)
T ss_pred             hhHHHHHHHHHHHHHhcCc-ccchhhHHHHHH
Confidence            5689999999987654321 123555566663

>PLN02592 ent-copalyl diphosphate synthase

Probab=97.40  E-value=0.0038  Score=60.76  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             chHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCC--CCCchhhHHHHHHHHHHhcCCCccCHHHHHHH
Q 026025           31 LRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILDADKVSNY  108 (244)
Q Consensus        31 ~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~  108 (244)
                      +..+.|.|+...=.+-|...+ .....++||+..|.+||+||..+.  ..-.+.+|.+++.+|.--+.. ...+++.+.|
T Consensus        95 ~S~YDTAWVAmVp~~~g~~~p-~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~rGl~f  172 (800)
T PLN02592         95 ISAYDTAWVALVEDINGSGTP-QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH-PEKCEKGMSF  172 (800)
T ss_pred             CcHHHhHHHhhcccCCCCCCC-CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc-HHHHHHHHHH
Confidence            455679994333333122222 456899999999999999987532  123568999999888653322 1125677888


Q ss_pred             HHhc
Q 026025          109 IVGL  112 (244)
Q Consensus       109 l~~~  112 (244)
                      |.+.
T Consensus       173 i~~n  176 (800)
T PLN02592        173 FREN  176 (800)
T ss_pred             HHHH
Confidence            8753

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0047  Score=63.66  Aligned_cols=197  Identities=15%  Similarity=0.162  Sum_probs=116.5

Q ss_pred             HHHHHHHHHhhCCCCCcCHHHHHHHHH-------hcccCCCCcCCCCC--CCCchhhHHHHHHHHHHhcCCCccC---HH
Q 026025           36 AYWGLTTLDILGKLDAVDEEDVISWIL-------KCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILD---AD  103 (244)
Q Consensus        36 ~y~al~~l~llg~~~~~~~~~~i~~l~-------~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~---~~  103 (244)
                      .++++.=|...+...++..++++++|.       ..+++||.|+.+-.  ..+...-|.+++.++....++-.+|   +.
T Consensus       948 ni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~ 1027 (1436)
T KOG1366|consen  948 NIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVIT 1027 (1436)
T ss_pred             hhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHH
Confidence            456666677777665556667777664       44568999988865  6677888888898887766543333   68


Q ss_pred             HHHHHHHhccCCCCCccCCC--------CCCC--------------Chh---hH-----------------HHHHHHHHh
Q 026025          104 KVSNYIVGLQNEDGSFSGDI--------WGEV--------------DTR---FS-----------------YIAICCLSI  141 (244)
Q Consensus       104 ~~~~~l~~~q~~dGgf~~~~--------~~~~--------------d~~---~t-----------------y~al~~l~~  141 (244)
                      ++++||..+|.++|+|....        ++..              |..   .+                 |.+-.+...
T Consensus      1028 ~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ayA 1107 (1436)
T KOG1366|consen 1028 QALNWLSQQQKENGSFKEVGEVLHNEMQGGLQDIVALTAIVLSVILDVDNASIQKAVAYLEESLDSGSMDVYTVAITAYA 1107 (1436)
T ss_pred             HHHHHHHHhhccCceEeccccccchhhhcCCCCcceeeeEeeeeeccchhhHHHHHHHHHhhccCccccccchHHHHHHH
Confidence            89999999999999996321        1111              111   11                 110000001


Q ss_pred             hcc-CChhhHHHHHHHHHhcCCCCC----CCC----------CCC-CCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 026025          142 LQR-LDKINVDKAVEYIVSCKNLDG----GFG----------CTP-GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWL  205 (244)
Q Consensus       142 l~~-~~~~~~e~~~~~i~~~Q~~dG----Gf~----------~~p-~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL  205 (244)
                      +.. ..+...+ ++.=+++.-...|    .|.          ..+ ....+...|.+|+.++..+...+  .....++||
T Consensus      1108 l~l~~sp~a~~-~~~~l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~~~~~~--~~~pivrWl 1184 (1436)
T KOG1366|consen 1108 LQLAKSPQAAK-ALAKLKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLLLAQVD--YALPIVRWL 1184 (1436)
T ss_pred             HHhccCchHHH-HHHhhhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHHhcccC--cCchhHhhh
Confidence            110 0111112 2222322111111    111          111 12457789999998888887654  456689999


Q ss_pred             HcccccCccccCCCCCCCCccccchhhHhhhhhhhcc
Q 026025          206 CERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRSS  242 (244)
Q Consensus       206 ~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~~  242 (244)
                      .+.++..|||+---+       +.-+|.+|.+|...+
T Consensus      1185 ~~qr~~~GGf~STQd-------TvvalqaLs~y~~~~ 1214 (1436)
T KOG1366|consen 1185 VEQRNALGGFSSTQD-------TVVALQALSEYAALS 1214 (1436)
T ss_pred             hhhhcccCceeehHH-------HHHHHHHHHHhhhhc
Confidence            998999999974322       346777777776543

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=96.37  E-value=0.0095  Score=51.25  Aligned_cols=130  Identities=16%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHHhcCCCc-----cCHHHHHHHHHhccCCCCCccCCC-CC-CCChhhHH---HHHHHHHhhccC------
Q 026025           82 LYTLSAVQVLALFDKVDI-----LDADKVSNYIVGLQNEDGSFSGDI-WG-EVDTRFSY---IAICCLSILQRL------  145 (244)
Q Consensus        82 ~~T~~al~~L~~l~~~~~-----~~~~~~~~~l~~~q~~dGgf~~~~-~~-~~d~~~ty---~al~~l~~l~~~------  145 (244)
                      ..|...|..|+.+.....     -...++++||.+.|.++|||.... .. .-+...||   ..+.++.+|...      
T Consensus        39 ~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~  118 (289)
T PF09492_consen   39 DATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGD  118 (289)
T ss_dssp             GTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TT
T ss_pred             hhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCC
Confidence            467788888776532211     125789999999999999998642 11 11112233   233444444221      


Q ss_pred             ----C-------hhhHHHHHHHHHhcCCC----CCCCCCCCCC-----------CcchhHHHHHHHHHHHhCCCCCC---
Q 026025          146 ----D-------KINVDKAVEYIVSCKNL----DGGFGCTPGG-----------ESHSGQIFCCVGALAIAGALHHV---  196 (244)
Q Consensus       146 ----~-------~~~~e~~~~~i~~~Q~~----dGGf~~~p~~-----------~~~~~~T~~al~aL~~l~~~~~~---  196 (244)
                          +       ...++|++++|+.+|-.    --+|+..-..           |+..-.+.-.+..+..|..++.+   
T Consensus       119 ~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~  198 (289)
T PF09492_consen  119 FAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPE  198 (289)
T ss_dssp             STTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHH
Confidence                1       12578999999999972    2466543110           11111111122333444333322   


Q ss_pred             ---CHHHHHHHHHccccc
Q 026025          197 ---DKDLLGWWLCERQVK  211 (244)
Q Consensus       197 ---~~~~~~~wL~~~Q~~  211 (244)
                         .++++++||.+...+
T Consensus       199 v~~aI~~AvaWl~~~ki~  216 (289)
T PF09492_consen  199 VLAAIEAAVAWLESVKIP  216 (289)
T ss_dssp             HHHHHHHHHHHHCCTSEE
T ss_pred             HHHHHHHHHHHHHhCcCC
Confidence               267899999887543

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.11  Score=53.90  Aligned_cols=69  Identities=13%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             HHHHHHHHHH-------cccCCCCcccccc--ccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcccCCCCcCC
Q 026025            6 ADKHVKYIIS-------VEKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG   73 (244)
Q Consensus         6 ~~~~~~yl~~-------~q~~dg~~~~~~~--~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q~~dGgf~~   73 (244)
                      ++++++||+.       .+++||+|..++.  .....|.|.|++.++.......   +....++++||...|.++|.|-.
T Consensus       966 k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen  966 KRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEec
Confidence            3566777765       3469999987776  4677888999999998876542   33577899999999999998864


Q ss_pred             C
Q 026025           74 N   74 (244)
Q Consensus        74 ~   74 (244)
                      .
T Consensus      1046 ~ 1046 (1436)
T KOG1366|consen 1046 V 1046 (1436)
T ss_pred             c
Confidence            3

>PLN02592 ent-copalyl diphosphate synthase

Probab=95.86  E-value=0.33  Score=47.68  Aligned_cols=77  Identities=14%  Similarity=0.151  Sum_probs=43.6

Q ss_pred             HHHHHHhhccCC--hhhHHHHHHHHHhcCCCCC-CCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccccc
Q 026025          135 AICCLSILQRLD--KINVDKAVEYIVSCKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK  211 (244)
Q Consensus       135 al~~l~~l~~~~--~~~~e~~~~~i~~~Q~~dG-Gf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~  211 (244)
                      .+-+|.-+|...  ...++.+.++|.++-...| ||+. ....+|...|..+.-.|...|..  +..+-..+|     ..
T Consensus       316 lVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld~TALaFRLLRqhGy~--VS~DvF~~F-----~~  387 (800)
T PLN02592        316 AVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFRLLRLHGHQ--VSADVFKHF-----EK  387 (800)
T ss_pred             HHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHHHHHHHHHHHHHcCCC--CChHHHHhh-----cC
Confidence            344444444321  2356778888877533333 3421 12357999999999999998874  333433333     22


Q ss_pred             CccccCCC
Q 026025          212 SGGLNGRP  219 (244)
Q Consensus       212 ~GGf~~~~  219 (244)
                      +|.|...+
T Consensus       388 ~g~F~~~~  395 (800)
T PLN02592        388 GGEFFCFA  395 (800)
T ss_pred             CCCccccc
Confidence            66775443

>PLN02279 ent-kaur-16-ene synthase

Probab=94.87  E-value=1.8  Score=42.75  Aligned_cols=55  Identities=13%  Similarity=0.111  Sum_probs=35.5

Q ss_pred             HHHHHHHHcccCCCCccccccc----cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHh
Q 026025            8 KHVKYIISVEKKKDSFESVVME----HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK   63 (244)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~----~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~   63 (244)
                      ..++||.+-|.+||+|+.....    .-.+..|.-++.+|.-=+..+ ...++.+.||.+
T Consensus        77 ~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~-~~~~~gl~fi~~  135 (784)
T PLN02279         77 ECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGE-EQINKGLQFIEL  135 (784)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCc-ccchhhHHHHHH
Confidence            4789999999999999743111    124455666666666544433 245777777764

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=93.65  E-value=0.28  Score=42.31  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHhcccCCCCcCCCC----CCCCchhhH-HHHHHHHHHhc-------CCCcc----------CHHHHHHHHH
Q 026025           53 DEEDVISWILKCQDESGGFAGNI----GHDPHVLYT-LSAVQVLALFD-------KVDIL----------DADKVSNYIV  110 (244)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~----~~~~~~~~T-~~al~~L~~l~-------~~~~~----------~~~~~~~~l~  110 (244)
                      ..+++++||++.|.++|||....    ++..|+..- -..+.+|.+|.       .+.-+          .+++++++|+
T Consensus        63 A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL  142 (289)
T PF09492_consen   63 AFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCIL  142 (289)
T ss_dssp             HHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999998762    222232100 01233333331       12212          2588999999


Q ss_pred             hccCCC----CCccC------------CCCCCCChhhHHHHHHHHHhhcc--CCh---hhHHHHHHHHHhcCCCCCCC
Q 026025          111 GLQNED----GSFSG------------DIWGEVDTRFSYIAICCLSILQR--LDK---INVDKAVEYIVSCKNLDGGF  167 (244)
Q Consensus       111 ~~q~~d----Ggf~~------------~~~~~~d~~~ty~al~~l~~l~~--~~~---~~~e~~~~~i~~~Q~~dGGf  167 (244)
                      ++|-..    -+|+.            +....+.+...=++-.+..++..  .++   ..++.+++|+.+.+-++.-|
T Consensus       143 ~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~  220 (289)
T PF09492_consen  143 KTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW  220 (289)
T ss_dssp             HHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred             HHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence            999732    34542            11111222222223233333332  221   25788999999887655444

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins

Probab=92.50  E-value=5.7  Score=38.34  Aligned_cols=131  Identities=19%  Similarity=0.223  Sum_probs=86.2

Q ss_pred             cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHH
Q 026025           30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI  109 (244)
Q Consensus        30 ~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l  109 (244)
                      .+++..+||++.++..||...+ +.+.+++++.+.-.+.         .+++...|+|+.+...++ -...-..++.+-+
T Consensus        46 ~~dLes~yyav~glk~Lg~~~~-~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~-C~~~~~~~~~~~l  114 (636)
T PF05817_consen   46 SSDLESAYYAVLGLKLLGIKVP-DSKAACKFLKKALDES---------SNDLESLFYAASASKALK-CKVSVSNEVKSLL  114 (636)
T ss_pred             cccHHHHHHHHhhHHHhCCCCC-ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcC-CcccCcHHHHHHH
Confidence            4678889999999999998765 4889999998854431         135888999998888776 2211134444445


Q ss_pred             HhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHH
Q 026025          110 VGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALA  188 (244)
Q Consensus       110 ~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~  188 (244)
                      ...-++|          +++...|.++.++..+|.. ...+.++.+.-|...+..|.          ....+-+|+.+++
T Consensus       115 ~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~al~~aa  174 (636)
T PF05817_consen  115 KAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYALHAAA  174 (636)
T ss_pred             HHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHHHHHHH
Confidence            4443332          2455699999999999852 23366777777777665533          2233445555555


Q ss_pred             HhC
Q 026025          189 IAG  191 (244)
Q Consensus       189 ~l~  191 (244)
                      .++
T Consensus       175 ~L~  177 (636)
T PF05817_consen  175 QLS  177 (636)
T ss_pred             hhc
Confidence            554

The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=90.36  E-value=1.4  Score=38.74  Aligned_cols=111  Identities=18%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhhCCCCC----------cCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCc---cCH
Q 026025           36 AYWGLTTLDILGKLDA----------VDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI---LDA  102 (244)
Q Consensus        36 ~y~al~~l~llg~~~~----------~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~---~~~  102 (244)
                      ..-|+.+|..+.....          ...+++++.|.+.|.+||-||       |+++|--|+++|...+....   -+-
T Consensus       189 ~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~~w~C  261 (326)
T PF01122_consen  189 GAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSESEWNC  261 (326)
T ss_dssp             HHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHHHHHH
T ss_pred             HHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcchhhHH
Confidence            4445666665544221          124567778888999999997       89999999999987765322   124


Q ss_pred             HHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCC
Q 026025          103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGC  169 (244)
Q Consensus       103 ~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~  169 (244)
                      .++.+++.+.. ++|.|..       +  + .+..+|-.|..-...|+..     ..|+.++|-+..
T Consensus       262 ~k~~~~ll~~i-~~G~F~n-------P--~-a~aQiLPaL~gKTYLDv~~-----~~C~~~~~~~~~  312 (326)
T PF01122_consen  262 QKALDALLKEI-SQGAFQN-------P--M-AIAQILPALNGKTYLDVNS-----VDCSSPDGNLNP  312 (326)
T ss_dssp             HHHHHHHHHHH-TTTTT-S-------H--H-HHHHHHHHHTT--GGGGGS-------SSS--EE---
T ss_pred             HHHHHHHHHHh-hcCCCCC-------H--H-HHHHHHHHHcCCCccccCC-----CCCCCCCCcccc
Confidence            66788887754 5898874       1  1 2345554443223333321     458888887653

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=89.83  E-value=1.6  Score=38.29  Aligned_cols=61  Identities=18%  Similarity=0.127  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCC---CCHHHHHHHHHcccccCccccC
Q 026025          149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLNG  217 (244)
Q Consensus       149 ~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~---~~~~~~~~wL~~~Q~~~GGf~~  217 (244)
                      .++++++.|++.|.+||-||.       .+.|--|+.+|...+....   ++-.++.++|+.. .++|.|+.
T Consensus       216 ~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~n  279 (326)
T PF01122_consen  216 AIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQN  279 (326)
T ss_dssp             HHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-S
T ss_pred             HHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCCC
Confidence            467788999999999999973       4568889998888876322   3356788888774 45888863

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
1dce_B	331	Crystal Structure Of Rab Geranylgeranyltransferase		5e-81
3pz1_B	330	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		5e-81
2h6i_B	437	W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN		7e-22
2h6g_B	437	W102t Protein Farnesyltransferase Mutant Complexed		7e-22
2h6h_B	437	Y365f Protein Farnesyltransferase Mutant Complexed		2e-21
1jcq_B	437	Crystal Structure Of Human Protein Farnesyltransfer		2e-21
3euv_B	427	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		3e-21
3pz4_B	426	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		9e-21
1o1r_B	427	Structure Of Fpt Bound To Ggpp Length = 427		9e-21
2zir_B	440	Crystal Structure Of Rat Protein Farnesyltransferas		1e-20
1ft1_B	437	Crystal Structure Of Protein Farnesyltransferase At		1e-20
1ft2_B	401	Co-Crystal Structure Of Protein Farnesyltransferase		1e-20
1nl4_B	401	Crystal Structure Of Rat Farnesyl Transferase In Co		1e-20
1n95_B	402	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		1e-20
1n94_B	397	Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf		1e-20
1n4p_B	377	Protein Geranylgeranyltransferase Type-I Complexed		3e-18
3q73_B	520	Cryptococcus Neoformans Protein Farnesyltransferase		7e-08

>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331

Iteration: 1
 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)
Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77
Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330

Iteration: 1
 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)
Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 17  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 76
Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 77  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 136
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 137 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 196
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 197 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 238

>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTTAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 72  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 129
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 130 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 189
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 190 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 249
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 250 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 296

>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 76  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 133
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 134 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 193
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 194 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 253
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 254 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 300

>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 51  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 108
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 109 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 168
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 169 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 228
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 229 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 275

>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 37/252 (14%)
Query: 7   DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
           D+HV++    ++   + + S  +E  RL  A++ L+ LD+L  LD V+++D+I WI    
Sbjct: 23  DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62  -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
            L  +D S     GF G        N   +P         H+  T + +  L +  D + 
Sbjct: 81  VLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLS 140
Query: 99  ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
            +D +     +  LQ EDGSF     G E D RF Y A C   +L     +++ KA+ YI
Sbjct: 141 RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
               + D G     G ESH G  FC + +L + G L  V  +K+L  +  W   RQ    
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDV 225
           G +GRP K  D 
Sbjct: 259 GYHGRPNKPVDT 270

>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 23/150 (15%)
Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGNIGHD--PHVLYTLSAVQVLAL 93
           +W + +LD+LG  LD   ++ V+S +L      GGF G   +   PH+L T ++V  LA+
Sbjct: 93  FWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAI 152
Query: 94  FDK-------VDILDADK-VSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL 145
                      D+  A + +  + +  +  DG F     GEVD R +Y   C L +   L
Sbjct: 153 AGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTY---CLLVVATLL 209
Query: 146 DKI------NVDKAVEYIVSCKNLDGGFGC 169
           D I      NVDK   ++ +C+  +GGF C
Sbjct: 210 DIITPELLHNVDK---FVSACQTYEGGFAC 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	9e-90
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	1e-30
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	2e-16
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	3e-06
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	1e-81
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	3e-28
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	7e-77
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	6e-72
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	4e-35
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	1e-24
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	2e-10
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	4e-06
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	1e-70
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	1e-17
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	3e-14
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	1e-10
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	1e-05
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	2e-05

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  267 bits (683), Expect = 9e-90
 Identities = 130/223 (58%), Positives = 173/223 (77%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I 
Sbjct: 17  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 76

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GD
Sbjct: 77  SCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD 136

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           IWGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+C
Sbjct: 137 IWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC 196

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           C G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 197 CTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  114 bits (287), Expect = 1e-30
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 1/194 (0%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           DK V Y+ S++K+  SF   +   +    ++  + TL +LGKLDA++ E  I ++L C +
Sbjct: 117 DKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 176

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
             GGF    G + H          LA+  ++  +++D +  ++   Q   G  +G     
Sbjct: 177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKL 236

Query: 127 VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC-KNLDGGFGCTPGGESHSGQIFCCVG 185
            D  +S+  +  L I+ RL  I+ +K   +I++C     GGF   PG           + 
Sbjct: 237 PDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIA 296

Query: 186 ALAIAGALHHVDKD 199
            L++ G        
Sbjct: 297 GLSLLGEEQIKPVS 310

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 76.3 bits (187), Expect = 2e-16
 Identities = 24/131 (18%), Positives = 56/131 (42%)

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           D  D L  +K ++YI    ++   +   +   +     Y  +  + ++ +L ++N ++ +
Sbjct: 13  DAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEIL 72

Query: 155 EYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG 214
            +I SC++  GG   + G + H       V  L +  ++H ++ D +  ++   Q + G 
Sbjct: 73  VFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGS 132

Query: 215 LNGRPEKLPDV 225
             G      D 
Sbjct: 133 FAGDIWGEIDT 143

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 37  YWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLYTLSAVQVLALFD 95
           +W L +L I+G+L  +D E + S+IL CQ +E+GGFA   G      +TL  +  L+L  
Sbjct: 243 WWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLG 302

Query: 96  KVDILDADKVSN 107
           +  I     V  
Sbjct: 303 EEQIKPVSPVFC 314

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  250 bits (638), Expect = 1e-81
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
            L  +KH  Y+    ++        ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 72  VLQREKHFHYLKRGLRQLTD-AYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +     + +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190

Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250

Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDV 225
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D 
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDG 298

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  110 bits (275), Expect = 3e-28
 Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K ++Y+ S+++   SF   V   + +  AY   +   +   +     E    WI +CQ+
Sbjct: 175 EKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQN 234

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWG 125
             GG  G  G + H  YT   +  L +  +   L+   +  ++   Q   +G F G    
Sbjct: 235 WEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNK 294

Query: 126 EVDTRFSYIAICCLSILQRLDK-------------INVDKAVEYI-VSCKNLDGGFGCTP 171
            VD  +S+     L +L R                 +     EYI + C+   GG    P
Sbjct: 295 LVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKP 354

Query: 172 GGESHSGQIFCCVGALAIAG 191
           G          C+  L+IA 
Sbjct: 355 GKSRDFYHTCYCLSGLSIAQ 374

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score =  240 bits (612), Expect = 7e-77
 Identities = 55/266 (20%), Positives = 102/266 (38%), Gaps = 44/266 (16%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILG-KLDAVDEEDVISWI 61
            L   +H +++ S   +    + V ++  R    +W + +LD+LG  LD   ++ V+S +
Sbjct: 60  GLRKQEHTQFLASSFFQLPG-KFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTL 118

Query: 62  LKCQDESGGFAGNIGHD--PHVLYTLSAVQVLALFDKVD--------ILDADKVSNYIVG 111
           L      GGF G   +   PH+L T ++V  LA+                   +  + + 
Sbjct: 119 LHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMR 178

Query: 112 LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCT- 170
            +  DG F     GEVD R +Y  +   ++L  +    +    +++ +C+  +GGF C  
Sbjct: 179 CKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACAS 238

Query: 171 ----------------------PGGESHSGQIFCCVGALAIAGALH------HVDKDLLG 202
                                    E+H G   C + +  +  ++        +D +   
Sbjct: 239 FPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAAL 298

Query: 203 WWLCERQVK---SGGLNGRPEKLPDV 225
            W   +Q +    GG  GR  KL D 
Sbjct: 299 RWTVLQQGEPIEGGGFRGRTNKLVDG 324

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  223 bits (569), Expect = 6e-72
 Identities = 65/257 (25%), Positives = 101/257 (39%), Gaps = 35/257 (13%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             +   D+HV++     +         +E  RL  A++ L+ LD+L  LD V+++D+I W
Sbjct: 17  RLDFLRDRHVRFFQRCLQVLPE-RYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEW 75

Query: 61  ILKCQ--------------------------DESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           I   Q                                  +     H+  T + +  L + 
Sbjct: 76  IYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIIL 135

Query: 95  -DKVDILDADKVSNYIVGLQNEDGSFSG-DIWGEVDTRFSYIAICCLSILQRLDKINVDK 152
            D +  +D +     +  LQ EDGSF       E D RF Y A C   +L     +++ K
Sbjct: 136 GDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKK 195

Query: 153 AVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCER 208
           A+ YI    + D G     G ESH G  FC + +L + G L  V    + + +  W   R
Sbjct: 196 AISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMR 255

Query: 209 QVKSGGLNGRPEKLPDV 225
           Q    G +GRP K  D 
Sbjct: 256 Q--QNGYHGRPNKPVDT 270

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  127 bits (320), Expect = 4e-35
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)

Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALF 94
           Y GL+ L ILG  L  VD+E  ++ +   Q E G F     G +  + +   A  +  + 
Sbjct: 126 YTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYML 185

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           +    +D  K  +YI    + D   +     E     ++  I  L ++ +L+++  +K +
Sbjct: 186 NNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKEL 245

Query: 155 EYIVS--CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL-GWWLCERQVK 211
             I          G+   P     +   F     L +     + + +    + L  +   
Sbjct: 246 NRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRL 305

Query: 212 SGGLNGRPEKLPDV 225
            GG    P+  PD 
Sbjct: 306 VGGFAKWPDSHPDA 319

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 99.5 bits (247), Expect = 1e-24
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 10/192 (5%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLR-LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ 65
           +  +  + +++ +  SF +V       +   Y       +L     +D +  IS+I +  
Sbjct: 145 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSM 204

Query: 66  DESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG--LQNEDGSFSGDI 123
               G A   G + H   T   +  L L  K++ + ++K  N I    +  +   + G  
Sbjct: 205 SYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRP 264

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGFGCTPGGES---HSGQ 179
              VDT +S+     L +L+     N +K   YI+S ++ L GGF   P       H+  
Sbjct: 265 NKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHA-- 322

Query: 180 IFCCVGALAIAG 191
            +  +  L++  
Sbjct: 323 -YFGICGLSLME 333

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAV----DEEDVISWIL 62
            K + YI       +               + G+ +L ++GKL+ V    +   +  W +
Sbjct: 194 KKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCI 253

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG-LQNEDGSFSG 121
             Q    G+ G         Y+      L L       + +K  NYI+       G F+ 
Sbjct: 254 MRQQ--NGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAK 311

Query: 122 DIWGEVDTRFSYIAICCLSILQRLDKINVD 151
                 D   +Y  IC LS+++      V 
Sbjct: 312 WPDSHPDALHAYFGICGLSLMEESGICKVH 341

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKC-QDESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           ++W   TL +L      + E   ++IL       GGFA      P  L+    +  L+L 
Sbjct: 273 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLM 332

Query: 95  DKVDILDADKVSN 107
           ++  I       N
Sbjct: 333 EESGICKVHPALN 345

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score =  220 bits (561), Expect = 1e-70
 Identities = 59/298 (19%), Positives = 101/298 (33%), Gaps = 76/298 (25%)

Query: 1   MGELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEE--DV 57
           M +L  +KH K+    +     + +S   +  +L   Y+ L  L ++ K    ++E    
Sbjct: 1   MNQLLINKHEKFFNRCLIGLPSTAQS--EDSNKLAIIYFCLHGLQLIQKFQFTNQELIYY 58

Query: 58  ISWILKCQDE------------SGGFAGNIGHDPHVLYTLSAVQVLALF--DKVDILDAD 103
            ++I+                            P++  TL A+  L +       I++  
Sbjct: 59  RNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRK 118

Query: 104 KVSNYIVGLQNEDGSFSG---------------DIWGEVDTRFSYIAICCLSILQRLDK- 147
           K+ N++   Q +DG   G                 +GE D R  Y+A+    +++  D  
Sbjct: 119 KIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNN 178

Query: 148 ------------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH 195
                       I++    ++I+   N++GGF  T   ESH G  FC + +L +      
Sbjct: 179 NNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLN-YPL 237

Query: 196 VDKDLLGWWLCERQVKS----------------------------GGLNGRPEKLPDV 225
                   WL  RQV                              GG NGR  KL D 
Sbjct: 238 EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDT 295

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score = 79.9 bits (196), Expect = 1e-17
 Identities = 42/250 (16%), Positives = 72/250 (28%), Gaps = 61/250 (24%)

Query: 37  YWGLTTLDILGK--LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL------------ 82
            + L  L IL       ++ + +++++ KCQ + G   G      +              
Sbjct: 98  LFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEP 157

Query: 83  ---YTLSAVQVLALFDKVDIL-------------DADKVSNYIVGLQNEDGSFSGDIWGE 126
                  A+ +  L    D               D   +  +I+   N +G FS  I  E
Sbjct: 158 DLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDE 217

Query: 127 VDTRFSYIAICCLSILQRL---------------------------DKINVDKAVEYIVS 159
               F++ AI  L +L                              +         Y   
Sbjct: 218 SHLGFTFCAIASLKLLNYPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYY 277

Query: 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAI--AGALHHVDKDLL-GWWLCERQVKS-GGL 215
                GGF       S +   + C G+L       +  VD +    + L + Q +  GG 
Sbjct: 278 RNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGF 337

Query: 216 NGRPEKLPDV 225
              P+  PD 
Sbjct: 338 GRDPDSTPDP 347

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score = 70.2 bits (171), Expect = 3e-14
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 31/190 (16%)

Query: 33  LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLA 92
           +                  +D   +  +IL   + +GGF+  I  + H+ +T  A+  L 
Sbjct: 172 MKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLK 231

Query: 93  LFDKVDI---------------------------LDADKVSNYIVGLQNEDGSFSGDIWG 125
           L +                                      NY      + G F+G    
Sbjct: 232 LLNYPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENK 291

Query: 126 EVDTRFSYIAICCLSILQ--RLDKINVDKAVEYIVSC--KNLDGGFGCTPGGESHSGQIF 181
             DT +S+     L  +    +  ++++KA +Y+++     L GGFG  P         +
Sbjct: 292 LSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSY 351

Query: 182 CCVGALAIAG 191
             + +L++  
Sbjct: 352 LALASLSLWN 361

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 60.2 bits (145), Expect = 1e-10
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 36/193 (18%)

Query: 55  EDVISWILKCQDESGGFA-------------------GNIGHDPHVLYTLSAVQVLALFD 95
                WI+  Q  +GG+                    G +   P    T   ++    F 
Sbjct: 401 TKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFG 460

Query: 96  KVDILDA-DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL-QRLDKINVDKA 153
             D      +   Y+   Q  DGS+    WG      +   +  L  +     +  + KA
Sbjct: 461 YDDAWKVIRRAVEYLKREQKPDGSW-FGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKA 519

Query: 154 VEYIVSCKNLDGGFG----------CTPGGESHSGQIFCCVGALAIAGALHH--VDKDLL 201
           ++++   +N DGG+G              G S   Q    + AL   G        + + 
Sbjct: 520 LDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQ 579

Query: 202 GWWLCERQVKSGG 214
             +L E Q   GG
Sbjct: 580 --YLVETQRPDGG 590

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161
            D+   Y++  Q ++G + G +    +       +    IL R+D+  ++K   Y++  +
Sbjct: 15  LDRAVEYLLSCQKDEGYWWGPL--LSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQ 72

Query: 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAG 191
             DG +   PGG            AL   G
Sbjct: 73  REDGTWALYPGGPPDLDTTIEAYVALKYIG 102

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 49/205 (23%)

Query: 55  EDVISWILKCQDESGGFA--------------------GNIGHDPHVLY-TLSAVQVLAL 93
            D ++ +L  ++  GGFA                    G+I  D   +  T + +Q L  
Sbjct: 484 CDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKY 543

Query: 94  FDKV--------DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL--- 142
           F K               +   +    Q  DGS+ G  WG   T  ++  +   + +   
Sbjct: 544 FHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQT 602

Query: 143 --QRLDKINVDKAVEYIVSCKNLDGGFG----------CTPGGESHSGQIFCCVGALAIA 190
                    V +A ++++S +  DGG+G               +S        +  L   
Sbjct: 603 YRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAV 662

Query: 191 GALHH--VDKDLLGWWLCERQVKSG 213
                   ++ +    L E+Q+ +G
Sbjct: 663 RHPDIEAQERGVR--CLLEKQLPNG 685

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.96
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.95
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.86
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.86
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.78
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.77
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.63
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.6
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.59
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.47
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.4
2hr0_B	915	Complement C3 alpha' chain; complement component C	99.37
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	99.22
2hr0_B	915	Complement C3 alpha' chain; complement component C	99.16
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.06
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	98.96
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	98.93
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.89
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.89
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.82
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.69
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	98.68
3prx_B	1642	Cobra venom factor; immune system, complement, imm	98.63
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.6
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.49
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.25
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.23
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.12
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	97.96
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	97.8
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	97.74
3prx_B	1642	Cobra venom factor; immune system, complement, imm	97.04
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	96.52
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	96.09
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	96.02
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	95.92
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	95.33
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	94.99
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	94.69
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	94.04
3k11_A	445	Putative glycosyl hydrolase; structural genomics,	83.84

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=1.8e-58  Score=403.18  Aligned_cols=239  Identities=55%  Similarity=1.050  Sum_probs=226.3

Q ss_pred             ccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCch
Q 026025            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (244)
Q Consensus         2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~   81 (244)
                      ..|++++|++||+++.....++.++..++++++.+||++.+|++||..+.++++++++||++||++||||++.+++++|+
T Consensus        16 ~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l   95 (331)
T 3dss_B           16 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHL   95 (331)
T ss_dssp             CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCH
T ss_pred             hhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccH
Confidence            36899999999999866667788999999999999999999999998777789999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcC
Q 026025           82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (244)
Q Consensus        82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q  161 (244)
                      ..||+|+++|.+++.++.++++++++||.++|++||||.+.+.+++|+++||||+++|.++|.++..+++++++||++||
T Consensus        96 ~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q  175 (331)
T 3dss_B           96 LYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCM  175 (331)
T ss_dssp             HHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999888899999999999999999999999889999999999999999999887788999999999999


Q ss_pred             CCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       162 ~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      ++||||+..|+.++|+.+||||+++|.++++.+.++++++++||.++|.++|||++||+|.+|+|||||++..|..+-+
T Consensus       176 ~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~  254 (331)
T 3dss_B          176 NFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGR  254 (331)
T ss_dssp             CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTC
T ss_pred             cCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999888999999999999999999999999999999999999988876543

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=1.8e-56  Score=403.76  Aligned_cols=236  Identities=24%  Similarity=0.369  Sum_probs=212.3

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhcccCCCCcCCCC--CCCC
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNI--GHDP   79 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~-~~~~~~~~~i~~l~~~q~~dGgf~~~~--~~~~   79 (244)
                      +|++++|++||+++... -+-.+...|.++++.+||++.+|++||. .+.+.++++++||++||+++|||++.+  ++.+
T Consensus        60 ~L~~~~Hi~yl~~~L~~-LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~  138 (520)
T 3q7a_B           60 GLRKQEHTQFLASSFFQ-LPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIP  138 (520)
T ss_dssp             CCCHHHHHHHHHHHHSC-BCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCC
T ss_pred             ccCHHHHHHHHHHHhhh-CChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence            69999999999998642 2234556689999999999999999995 344578899999999999999999999  9999


Q ss_pred             chhhHHHHHHHHHHhcCC------CccC--HHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHH
Q 026025           80 HVLYTLSAVQVLALFDKV------DILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD  151 (244)
Q Consensus        80 ~~~~T~~al~~L~~l~~~------~~~~--~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e  151 (244)
                      |+.+||+||++|.+++..      +.+|  ++++++||.++|++||||.+..+++.|+++||||++++.++|.++..+++
T Consensus       139 hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~  218 (520)
T 3q7a_B          139 HLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLH  218 (520)
T ss_dssp             CHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHT
T ss_pred             cHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHH
Confidence            999999999999999763      3567  89999999999999999999888899999999999999999998888999


Q ss_pred             HHHHHHHhcCCCCCCCCC-----------------------CCCCCcchhHHHHHHHHHHHhCCCC------CCCHHHHH
Q 026025          152 KAVEYIVSCKNLDGGFGC-----------------------TPGGESHSGQIFCCVGALAIAGALH------HVDKDLLG  202 (244)
Q Consensus       152 ~~~~~i~~~Q~~dGGf~~-----------------------~p~~~~~~~~T~~al~aL~~l~~~~------~~~~~~~~  202 (244)
                      ++++||++||++||||+.                       .|+.|+|+++|||||++|.+|+.++      .++.++++
T Consensus       219 kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~  298 (520)
T 3q7a_B          219 NVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAAL  298 (520)
T ss_dssp             THHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHH
T ss_pred             HHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHH
Confidence            999999999999999999                       6799999999999999999999863      57899999


Q ss_pred             HHHHcccc---cCccccCCCCCCCCccccchhhHhhhhhh
Q 026025          203 WWLCERQV---KSGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       203 ~wL~~~Q~---~~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      +||.+||.   ++|||+|||||.+|+|||||.+..|..+.
T Consensus       299 ~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~  338 (520)
T 3q7a_B          299 RWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAE  338 (520)
T ss_dssp             HHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHH
T ss_pred             HHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHH
Confidence            99999995   46999999999999999999877766554

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=4.7e-56  Score=392.25  Aligned_cols=237  Identities=24%  Similarity=0.314  Sum_probs=209.2

Q ss_pred             CccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcccCC----CCcCCC
Q 026025            1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDES----GGFAGN   74 (244)
Q Consensus         1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~~d----Ggf~~~   74 (244)
                      |..|++++|++|++++.+. -+-.+...|.++++.+||++.+|++||.+  .+.++++.++||.+||.++    |||++.
T Consensus         1 ~~~l~~~kHiky~~~~L~~-Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~   79 (390)
T 3dra_B            1 MNQLLINKHEKFFNRCLIG-LPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRST   79 (390)
T ss_dssp             -CCCCHHHHHHHHHHHHHC-CCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSS
T ss_pred             CccccHHHHHHHHHHHHHh-CCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCC
Confidence            7899999999999986552 22234556899999999999999999986  4557889999999998653    999998


Q ss_pred             C-----C---CCCchhhHHHHHHHHHHhcCC--CccCHHHHHHHHHhccC---C-CCCccCCC-----------CCCCCh
Q 026025           75 I-----G---HDPHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQN---E-DGSFSGDI-----------WGEVDT  129 (244)
Q Consensus        75 ~-----~---~~~~~~~T~~al~~L~~l~~~--~~~~~~~~~~~l~~~q~---~-dGgf~~~~-----------~~~~d~  129 (244)
                      +     +   +.+|+.+||+||++|.++++.  +.+|++++++||.++|+   + ||||...+           .++.|+
T Consensus        80 ~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~  159 (390)
T 3dra_B           80 HYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDL  159 (390)
T ss_dssp             GGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCH
T ss_pred             ccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchH
Confidence            5     5   579999999999999999874  78899999999999998   6 89999543           579999


Q ss_pred             hhHHHHHHHHHhhccCC-------------hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC
Q 026025          130 RFSYIAICCLSILQRLD-------------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV  196 (244)
Q Consensus       130 ~~ty~al~~l~~l~~~~-------------~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~  196 (244)
                      |++|||++++.+|+...             .++++++++||++||++||||+..|+.|+|+++|||||++|.+++++ ..
T Consensus       160 R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~  238 (390)
T 3dra_B          160 RVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LE  238 (390)
T ss_dssp             HHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GG
T ss_pred             HHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cc
Confidence            99999999999999876             57899999999999999999999999999999999999999999986 47


Q ss_pred             CHHHHHHHHHcccc----------------------------cCccccCCCCCCCCccccchhhHhhhhhh
Q 026025          197 DKDLLGWWLCERQV----------------------------KSGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       197 ~~~~~~~wL~~~Q~----------------------------~~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      +++++++||.+||.                            ++|||+|||||.+|+|||||++..|..+-
T Consensus       239 d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~  309 (390)
T 3dra_B          239 KLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNID  309 (390)
T ss_dssp             GCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhc
Confidence            88999999999996                            57999999999999999999988776654

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=3e-55  Score=387.64  Aligned_cols=233  Identities=29%  Similarity=0.479  Sum_probs=211.1

Q ss_pred             cccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccc---------CCCCcC
Q 026025            3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD---------ESGGFA   72 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~---------~dGgf~   72 (244)
                      +|.+++|++||+++.+. +.+  +...|.++++.+||++.+|++||.....+++++++||+++|+         ++|||+
T Consensus        19 ~l~~~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~   96 (377)
T 1n4q_B           19 DFLRDRHVRFFQRCLQVLPER--YSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR   96 (377)
T ss_dssp             CCCHHHHHHHHHHHHHEECGG--GGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred             ccCHHHHHHHHHHHhhcCCcc--ccccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence            48999999999998764 444  556789999999999999999997555579999999999999         689999


Q ss_pred             CCCCC-----------------CCchhhHHHHHHHHHHhc-CCCccCHHHHHHHHHhccCCCCCccCC-CCCCCChhhHH
Q 026025           73 GNIGH-----------------DPHVLYTLSAVQVLALFD-KVDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSY  133 (244)
Q Consensus        73 ~~~~~-----------------~~~~~~T~~al~~L~~l~-~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~~~d~~~ty  133 (244)
                      ++++.                 .+|+.+||+||++|.+++ .++.++++++++||.++|++||||.+. ..++.|+|+||
T Consensus        97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY  176 (377)
T 1n4q_B           97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY  176 (377)
T ss_dssp             SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHH
T ss_pred             CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHH
Confidence            98764                 489999999999999997 467889999999999999999999986 56899999999


Q ss_pred             HHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC----CHHHHHHHHHccc
Q 026025          134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ  209 (244)
Q Consensus       134 ~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~----~~~~~~~wL~~~Q  209 (244)
                      ||++++.++|..+.++++++++||++||++||||+..|+.|+|+.+||||+++|.++++.+..    +++++++||.+||
T Consensus       177 ~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ  256 (377)
T 1n4q_B          177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ  256 (377)
T ss_dssp             HHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC
Confidence            999999999987778999999999999999999999999999999999999999999976543    7899999999999


Q ss_pred             ccCccccCCCCCCCCccccchhhHhhhhhh
Q 026025          210 VKSGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       210 ~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                        +|||+|||||.+|+|||||.+..|..+.
T Consensus       257 --~gGf~GR~nK~~D~CYSfWv~~~l~iL~  284 (377)
T 1n4q_B          257 --QNGYHGRPNKPVDTCYSFWVGATLKLLK  284 (377)
T ss_dssp             --SSSBCSSTTSCCCTTHHHHHHHHHHHTT
T ss_pred             --CCCcCCCCCcchhHHHHHHHHHHHHHhC
Confidence              9999999999999999999998887654

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=2.2e-54  Score=388.70  Aligned_cols=235  Identities=31%  Similarity=0.499  Sum_probs=217.5

Q ss_pred             cccHHHHHHHHHHc-ccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025            3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (244)
Q Consensus         3 ~~~~~~~~~yl~~~-q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (244)
                      +|++++|++||+++ |+.+|+|....  .++++.+||++.+|++||.. ....++++++||+++|++||||++.+...+|
T Consensus        72 ~l~~~~hi~~l~~~lq~~~gg~~a~D--~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~  149 (437)
T 2h6f_B           72 VLQREKHFHYLKRGLRQLTDAYECLD--ASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH  149 (437)
T ss_dssp             CCCHHHHHHHHHHHTTEECGGGGGGT--TCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred             cccHHHHHHHHHHcCCCCCCCccccc--CCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence            58899999999999 88999988763  56788899999999999964 3346889999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHH
Q 026025           81 VLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI  157 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i  157 (244)
                      +..|++||.+|.+++..   +.++++++++||+++|++||||.+++++++|+++||||+++|.++|..+...++++++||
T Consensus       150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L  229 (437)
T 2h6f_B          150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI  229 (437)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred             hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999999999999863   678899999999999999999999888999999999999999999987777889999999


Q ss_pred             HhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccc-cCccccCCCCCCCCccccchhhHhhh
Q 026025          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGIFSQPNLMME  236 (244)
Q Consensus       158 ~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~~~~d~~ys~~~l~~l~  236 (244)
                      ++||++||||+..|+.++|+.+|||||++|.++++.+.++++++++||++||. ++|||++||||.+|+|||||.+..|.
T Consensus       230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~  309 (437)
T 2h6f_B          230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLP  309 (437)
T ss_dssp             HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHH
T ss_pred             HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888999999999999996 89999999999999999999988877


Q ss_pred             hhh
Q 026025          237 HSC  239 (244)
Q Consensus       237 ~~~  239 (244)
                      .+.
T Consensus       310 lL~  312 (437)
T 2h6f_B          310 LLH  312 (437)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=5.3e-51  Score=355.99  Aligned_cols=238  Identities=20%  Similarity=0.294  Sum_probs=225.5

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (244)
                      +++++++++||+++|++||+|....++++++..||.|+.+|.+++....++++++++||.++|++||||+..+..++|+.
T Consensus        65 ~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~  144 (331)
T 3dss_B           65 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR  144 (331)
T ss_dssp             GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred             hhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchH
Confidence            57899999999999999999998877889999999999999999876667899999999999999999999888899999


Q ss_pred             hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (244)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~  162 (244)
                      .||+|+.+|.+++..+.++++++++||.+||++||||+++|+.++|+.+||||+++|.+++..+.++++++++||.++|+
T Consensus       145 ~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~  224 (331)
T 3dss_B          145 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL  224 (331)
T ss_dssp             HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCC
Confidence            99999999999998887889999999999999999999999999999999999999999998877889999999999999


Q ss_pred             CCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccC-ccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       163 ~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~-GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      +||||+.+|++++|+++|||++++|.++++.+.++.+++++||++||+.+ |||+.+|++.+|.++|||.|..|..+-.
T Consensus       225 ~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~  303 (331)
T 3dss_B          225 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE  303 (331)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred             CCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999988899999999999999876 9999999999999999999999887654

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=2.1e-45  Score=330.37  Aligned_cols=237  Identities=18%  Similarity=0.240  Sum_probs=217.5

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (244)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (244)
                      ..++++++||.++|++||+|.....+.+++..||.|+.+|.++|..   ..++++++++||+++|++||||+..++.+++
T Consensus       121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d  200 (437)
T 2h6f_B          121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVD  200 (437)
T ss_dssp             HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBS
T ss_pred             HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCcc
Confidence            3578999999999999999987666678999999999999999974   3457999999999999999999998888999


Q ss_pred             hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~  160 (244)
                      +..||+|+.+|.+++..+...++++++||.++|++||||+.+|+.++|..+||||+++|.++|..+..+++++++||.++
T Consensus       201 ~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~r  280 (437)
T 2h6f_B          201 VRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSR  280 (437)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhc
Confidence            99999999999999887666789999999999999999999999999999999999999999988788999999999999


Q ss_pred             CC-CCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHc-ccccCccccCCCCCCCCc
Q 026025          161 KN-LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCE-RQVKSGGLNGRPEKLPDV  225 (244)
Q Consensus       161 Q~-~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~wL~~-~Q~~~GGf~~~~~~~~d~  225 (244)
                      |. ++|||..+|++.+|++||||++++|.+++..             ..+|.+++.+||+. +|+++|||+.+|++.+|.
T Consensus       281 Q~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~  360 (437)
T 2h6f_B          281 QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF  360 (437)
T ss_dssp             BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred             CCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCH
Confidence            98 8999999999999999999999999999753             14789999999998 689999999999999999


Q ss_pred             cccchhhHhhhhhhh
Q 026025          226 GIFSQPNLMMEHSCR  240 (244)
Q Consensus       226 ~ys~~~l~~l~~~~~  240 (244)
                      ++||..|..|+.+..
T Consensus       361 yHT~y~L~gLsl~~~  375 (437)
T 2h6f_B          361 YHTCYCLSGLSIAQH  375 (437)
T ss_dssp             HHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999988888887753

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=2.2e-43  Score=311.87  Aligned_cols=235  Identities=17%  Similarity=0.234  Sum_probs=214.5

Q ss_pred             cccHHHHHHHHHHccc---------CCCCcccccc-----------------ccchHHHHHHHHHHHHhhCCC-CCcCHH
Q 026025            3 ELAADKHVKYIISVEK---------KKDSFESVVM-----------------EHLRLNGAYWGLTTLDILGKL-DAVDEE   55 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~---------~dg~~~~~~~-----------------~~~~~~~~y~al~~l~llg~~-~~~~~~   55 (244)
                      .++++++++||.++|+         ++|||..+..                 |.+++..||.||.+|.+++.. +.++++
T Consensus        66 ~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~  145 (377)
T 1n4q_B           66 VVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKE  145 (377)
T ss_dssp             GSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHH
T ss_pred             ccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHH
Confidence            4568999999999999         6899975542                 347899999999999999964 456899


Q ss_pred             HHHHHHHhcccCCCCcCCC-CCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH
Q 026025           56 DVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI  134 (244)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~  134 (244)
                      ++++||.++|++||+|.+. ...+.++..||+|+.++.+++..+.++++++++||++||+.||||+..|+.|++..+|||
T Consensus       146 ~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~c  225 (377)
T 1n4q_B          146 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC  225 (377)
T ss_dssp             HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHH
Confidence            9999999999999999986 567899999999999999999877788999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCChh----hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccc
Q 026025          135 AICCLSILQRLDKI----NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV  210 (244)
Q Consensus       135 al~~l~~l~~~~~~----~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~  210 (244)
                      |+++|.+++..+..    +++++++||.+.|  +|||.++|++.+|++|+||++++|.+++..+.+|.+++++||+++|+
T Consensus       226 AlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~  303 (377)
T 1n4q_B          226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD  303 (377)
T ss_dssp             HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcC
Confidence            99999999975433    7899999999999  89999999999999999999999999999888999999999999998


Q ss_pred             c-CccccCCCCCCCCccccchhhHhhhhhh
Q 026025          211 K-SGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       211 ~-~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      + +|||+.+|++.+|.++||..|..|+.+.
T Consensus       304 ~~~GGf~~~p~~~~D~~HT~~~LagLsl~~  333 (377)
T 1n4q_B          304 RLVGGFAKWPDSHPDALHAYFGICGLSLME  333 (377)
T ss_dssp             TTTCSBCSSTTSCCBHHHHHHHHHHHHHTT
T ss_pred             CCCCCcCCCCCCCCCHHHHHHHHHHHHhcC
Confidence            7 9999999999999999999998888764

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=7e-43  Score=308.26  Aligned_cols=234  Identities=21%  Similarity=0.277  Sum_probs=210.1

Q ss_pred             cHHHHHHHHHHcccCC----CCccccc-----c---ccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccc---C
Q 026025            5 AADKHVKYIISVEKKK----DSFESVV-----M---EHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD---E   67 (244)
Q Consensus         5 ~~~~~~~yl~~~q~~d----g~~~~~~-----~---~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~---~   67 (244)
                      ++++.++||.++|.++    |+|....     +   +.+++..||+||.+|.+|+..  ..++++++++||.+||+   +
T Consensus        54 ~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~  133 (390)
T 3dra_B           54 ELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGI  133 (390)
T ss_dssp             HHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSST
T ss_pred             HHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCC
Confidence            5778999999998753    7887653     3   578999999999999999986  45789999999999999   7


Q ss_pred             -CCCcCCCC-----------CCCCchhhHHHHHHHHHHhcCCC-------------ccCHHHHHHHHHhccCCCCCccCC
Q 026025           68 -SGGFAGNI-----------GHDPHVLYTLSAVQVLALFDKVD-------------ILDADKVSNYIVGLQNEDGSFSGD  122 (244)
Q Consensus        68 -dGgf~~~~-----------~~~~~~~~T~~al~~L~~l~~~~-------------~~~~~~~~~~l~~~q~~dGgf~~~  122 (244)
                       ||||+..+           +.+.++..||+|+.++.+|+...             .+|++++++||.+||+.||||+..
T Consensus       134 ~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~  213 (390)
T 3dra_B          134 NKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSST  213 (390)
T ss_dssp             TTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSS
T ss_pred             CCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence             89999654           57899999999999999998766             688999999999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC----------------------------CCCCCCCCCCCC
Q 026025          123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN----------------------------LDGGFGCTPGGE  174 (244)
Q Consensus       123 ~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~----------------------------~dGGf~~~p~~~  174 (244)
                      |+.|+|..+||||+++|.+++.+ ..+++++++||.++|.                            ++|||.++|++.
T Consensus       214 p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl  292 (390)
T 3dra_B          214 IMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKL  292 (390)
T ss_dssp             TTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCC
T ss_pred             CCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCc
Confidence            99999999999999999999986 4688999999999997                            479999999999


Q ss_pred             cchhHHHHHHHHHHHhCC--CCCCCHHHHHHHHHcc-ccc-CccccCCCCCCCCccccchhhHhhhhhh
Q 026025          175 SHSGQIFCCVGALAIAGA--LHHVDKDLLGWWLCER-QVK-SGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       175 ~~~~~T~~al~aL~~l~~--~~~~~~~~~~~wL~~~-Q~~-~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      +|++|+||++++|.+++.  .+.+|.+++.+||+.| |++ .|||+.+|++.||.++||..|..|+.+.
T Consensus       293 ~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~  361 (390)
T 3dra_B          293 SDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWN  361 (390)
T ss_dssp             BCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcC
Confidence            999999999999999994  5678999999999998 575 9999999999999999998888887764

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=6.6e-43  Score=315.46  Aligned_cols=238  Identities=18%  Similarity=0.235  Sum_probs=214.4

Q ss_pred             ccHHHHHHHHHHcccCCCCccccc--cccchHHHHHHHHHHHHhhCCCC------CcC--HHHHHHHHHhcccCCCCcCC
Q 026025            4 LAADKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLD------AVD--EEDVISWILKCQDESGGFAG   73 (244)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~al~~l~llg~~~------~~~--~~~~i~~l~~~q~~dGgf~~   73 (244)
                      .+++++++||.++|+++|||....  .+.+++..||.||.+|.+++...      .++  ++++++||.++|++||+|..
T Consensus       109 ~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g  188 (520)
T 3q7a_B          109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVV  188 (520)
T ss_dssp             HHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence            467899999999999999999887  78899999999999999999752      234  88999999999999999998


Q ss_pred             CCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccC-----------------------CCCCCCChh
Q 026025           74 NIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG-----------------------DIWGEVDTR  130 (244)
Q Consensus        74 ~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~-----------------------~~~~~~d~~  130 (244)
                      ..+.+.++..||+|+.+|.+++..+..+++++++||.+||+.||||+.                       .|+.|+|..
T Consensus       189 ~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgG  268 (520)
T 3q7a_B          189 CEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGG  268 (520)
T ss_dssp             STTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHH
T ss_pred             CCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchh
Confidence            877889999999999999999987777889999999999999999999                       568899999


Q ss_pred             hHHHHHHHHHhhccCC------hhhHHHHHHHHHhcCC---CCCCCCCCCCCCcchhHHHHHHHHHHHhCCC--------
Q 026025          131 FSYIAICCLSILQRLD------KINVDKAVEYIVSCKN---LDGGFGCTPGGESHSGQIFCCVGALAIAGAL--------  193 (244)
Q Consensus       131 ~ty~al~~l~~l~~~~------~~~~e~~~~~i~~~Q~---~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~--------  193 (244)
                      +||||+++|.+|+.++      .++.+++++|+..+|.   ++|||.++|++.+|++|+||+.++|.+|+..        
T Consensus       269 yTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~  348 (520)
T 3q7a_B          269 YTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRK  348 (520)
T ss_dssp             HHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccc
Confidence            9999999999999863      5689999999999996   4699999999999999999999999998753        


Q ss_pred             ------------------------CCCCHHHHHHHHH-cccccC---ccccCCCCCCCCccccchhhHhhhhhhhc
Q 026025          194 ------------------------HHVDKDLLGWWLC-ERQVKS---GGLNGRPEKLPDVGIFSQPNLMMEHSCRS  241 (244)
Q Consensus       194 ------------------------~~~~~~~~~~wL~-~~Q~~~---GGf~~~~~~~~d~~ys~~~l~~l~~~~~~  241 (244)
                                              ..+|.+++.+||+ .+|.+.   |||+.+|++.+|.+|||..|.-|+.++.+
T Consensus       349 ~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~  424 (520)
T 3q7a_B          349 VKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHK  424 (520)
T ss_dssp             C---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSC
T ss_pred             cccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC
Confidence                                    2368899999998 589876   99999999999999999998888877643

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.96  E-value=7.6e-28  Score=226.57  Aligned_cols=232  Identities=18%  Similarity=0.174  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHcccCC-C------------Ccccccc--ccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccc
Q 026025            6 ADKHVKYIISVEKKK-D------------SFESVVM--EHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD   66 (244)
Q Consensus         6 ~~~~~~yl~~~q~~d-g------------~~~~~~~--~~~~~~~~y~al~~l~llg~~~----~~~~~~~i~~l~~~q~   66 (244)
                      .+++++||++.|..+ |            +|.+...  ..++++.|.+++.+|..++...    ....+++++||+++|+
T Consensus       333 ~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~  412 (631)
T 2sqc_A          333 LVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS  412 (631)
T ss_dssp             HHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcC
Confidence            578999999988642 3            3332211  2367899999999999998742    1246789999999999


Q ss_pred             CCCCcCCCCC-------------------CCCchhhHHHHHHHHHHhcCC-CccCHHHHHHHHHhccCCCCCccCCCCCC
Q 026025           67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE  126 (244)
Q Consensus        67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~q~~dGgf~~~~~~~  126 (244)
                      +||||+.++.                   ..+++..|..++.+|..++.. ....++++++||.++|++||||.+.+   
T Consensus       413 ~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~w---  489 (631)
T 2sqc_A          413 SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW---  489 (631)
T ss_dssp             TTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSS---
T ss_pred             CCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCC---
Confidence            9999976532                   126778999999999887642 22347899999999999999997654   


Q ss_pred             CChhhHHHHHHHH---HhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCC----------CCCcchhHHHHHHHHHHHhCC
Q 026025          127 VDTRFSYIAICCL---SILQRL-DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGA  192 (244)
Q Consensus       127 ~d~~~ty~al~~l---~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p----------~~~~~~~~T~~al~aL~~l~~  192 (244)
                       +.+++|++..++   ..++.. ....++++++||+++|++||||+..+          +.++++..|+||+.+|..++.
T Consensus       490 -g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~  568 (631)
T 2sqc_A          490 -GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR  568 (631)
T ss_dssp             -BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred             -CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence             345666654444   444432 24578999999999999999998653          457899999999999999987


Q ss_pred             CCCCCHHHHHHHHHcccccCccccCCCCC---CCCccccc-------hhhHhhhhhhhc
Q 026025          193 LHHVDKDLLGWWLCERQVKSGGLNGRPEK---LPDVGIFS-------QPNLMMEHSCRS  241 (244)
Q Consensus       193 ~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~---~~d~~ys~-------~~l~~l~~~~~~  241 (244)
                      .+...++++++||.++|+++|||......   ++..||--       |+|.+|++|.++
T Consensus       569 ~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y~~~  627 (631)
T 2sqc_A          569 AESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQA  627 (631)
T ss_dssp             SSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHHHHHHH
Confidence            65556899999999999999999876643   55666552       899999999875

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.95  E-value=2.7e-27  Score=225.53  Aligned_cols=236  Identities=15%  Similarity=0.148  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHcccCC--------------CCccccccc--cchHHHHHHHHHHHHhhCCC--------CCcCHHHHHHHH
Q 026025            6 ADKHVKYIISVEKKK--------------DSFESVVME--HLRLNGAYWGLTTLDILGKL--------DAVDEEDVISWI   61 (244)
Q Consensus         6 ~~~~~~yl~~~q~~d--------------g~~~~~~~~--~~~~~~~y~al~~l~llg~~--------~~~~~~~~i~~l   61 (244)
                      .+++++||++.|..+              |+|.+...+  .+++..|.+++.+|..+...        .....+++++||
T Consensus       411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL  490 (732)
T 1w6k_A          411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL  490 (732)
T ss_dssp             HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence            468999999998755              888765432  46788899999999887421        122467899999


Q ss_pred             HhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCC----C----ccCHHHHHHHHHhc
Q 026025           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV----D----ILDADKVSNYIVGL  112 (244)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~----~----~~~~~~~~~~l~~~  112 (244)
                      +++|++||||+.+..                     ..+++..|.+++.+|..++..    .    ...++++++||.++
T Consensus       491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~  570 (732)
T 1w6k_A          491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ  570 (732)
T ss_dssp             HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence            999999999975421                     124677899999999877531    1    12478999999999


Q ss_pred             cCCCCCccCCCCCCCChhhHHHHHHHHHhhccCCh-----hhHHHHHHHHHhcCCCCCCCCCC----------CCCCcch
Q 026025          113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK-----INVDKAVEYIVSCKNLDGGFGCT----------PGGESHS  177 (244)
Q Consensus       113 q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~-----~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~  177 (244)
                      |++||||.++++ ..++..|++++.+|..+|....     ..++++++||+++|++||||+..          ++.++++
T Consensus       571 Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v  649 (732)
T 1w6k_A          571 QRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI  649 (732)
T ss_dssp             SCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred             cCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence            999999988653 2344556678888888887431     46899999999999999999874          3557899


Q ss_pred             hHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCC--CCCCCcccc----c---hhhHhhhhhhhcc
Q 026025          178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGIF----S---QPNLMMEHSCRSS  242 (244)
Q Consensus       178 ~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~~~~d~~ys----~---~~l~~l~~~~~~~  242 (244)
                      ..|.||+.+|..++..+..+++++++||.++|+++|||.-.+  +.++..||-    |   |++.+|++|+++.
T Consensus       650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y~~~~  723 (732)
T 1w6k_A          650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLY  723 (732)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhhcccchhHHHHHHHHHHHHHhc
Confidence            999999999988887655568899999999999999998544  335566662    2   8999999998754

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.86  E-value=5e-21  Score=182.41  Aligned_cols=231  Identities=13%  Similarity=0.086  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHc--ccCCCCccccccccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhcccCC-----------
Q 026025            6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDES-----------   68 (244)
Q Consensus         6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~----~~~~~~~i~~l~~~q~~d-----------   68 (244)
                      ..+|++.|.+.  ..+||.+. .....+.++.|.+++.+|.-.|...    ....+++++||+++|..+           
T Consensus       358 ~~~~l~~l~~~l~~~~dG~~~-q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~  436 (732)
T 1w6k_A          358 FQEHVSRIPDYLWMGLDGMKM-QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQ  436 (732)
T ss_dssp             HHHHHHTSGGGEEEETTEEEE-CSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCC
T ss_pred             HHHHHHHHHHhheeCCCCcee-CCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccC
Confidence            34566666664  34665332 2111267899999999998887532    124678999999999766           


Q ss_pred             ---CCcCCCCC--CCCchhhHHHHHHHHHHhcCCC-----cc---CHHHHHHHHHhccCCCCCccCCCC-----------
Q 026025           69 ---GGFAGNIG--HDPHVLYTLSAVQVLALFDKVD-----IL---DADKVSNYIVGLQNEDGSFSGDIW-----------  124 (244)
Q Consensus        69 ---Ggf~~~~~--~~~~~~~T~~al~~L~~l~~~~-----~~---~~~~~~~~l~~~q~~dGgf~~~~~-----------  124 (244)
                         |||+....  ..+++..|..++.+|..+....     .+   .++++++||.++|++||||.....           
T Consensus       437 ~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~  516 (732)
T 1w6k_A          437 MRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLN  516 (732)
T ss_dssp             CCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGC
T ss_pred             CCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCc
Confidence               88876543  4578999999999998874321     12   358899999999999999963110           


Q ss_pred             -----CC-----CChhhHHHHHHHHHhhccC--------ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHH
Q 026025          125 -----GE-----VDTRFSYIAICCLSILQRL--------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA  186 (244)
Q Consensus       125 -----~~-----~d~~~ty~al~~l~~l~~~--------~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~a  186 (244)
                           +.     +.+..|..++.+|..++..        ....++++++||+++|++||||....+ ..+.+.|++++.+
T Consensus       517 ~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~A  595 (732)
T 1w6k_A          517 PSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEA  595 (732)
T ss_dssp             CCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHH
T ss_pred             chhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHH
Confidence                 11     1223455567777666542        124588999999999999999987554 3566789999999


Q ss_pred             HHHhCCCCC-----CCHHHHHHHHHcccccCccccCCC----------CCCCCccccchhhHhhhhh
Q 026025          187 LAIAGALHH-----VDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVGIFSQPNLMMEHS  238 (244)
Q Consensus       187 L~~l~~~~~-----~~~~~~~~wL~~~Q~~~GGf~~~~----------~~~~d~~ys~~~l~~l~~~  238 (244)
                      |.+++....     ..++++++||+++|+++|||+..+          .+.+|.+.+.|+|.+|-..
T Consensus       596 L~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~a  662 (732)
T 1w6k_A          596 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAV  662 (732)
T ss_dssp             HHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHT
T ss_pred             HHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence            999987432     347899999999999999998642          4567888898999887543

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.86  E-value=1.2e-20  Score=177.65  Aligned_cols=232  Identities=16%  Similarity=0.049  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHcc--cCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhcccCC-------------C
Q 026025            6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDES-------------G   69 (244)
Q Consensus         6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~~d-------------G   69 (244)
                      .++|++.|.+..  .+||++..... .+.++.|.|++.+|..+|... ....+++++||.++|..+             |
T Consensus       283 ~~~~~~~~~~~~~~~~dGg~~~~~~-~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~G  361 (631)
T 2sqc_A          283 FIKGWEGLELYGVELDYGGWMFQAS-ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPG  361 (631)
T ss_dssp             HHHHHHGGGGGEEECTTSCEEECSS-CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCC
T ss_pred             HHHHHHHHHhceEEcCCCceeeCCC-CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCC
Confidence            456666666653  46756544433 378999999999999999753 346889999999998643             4


Q ss_pred             CcCCC--CCCCCchhhHHHHHHHHHHhcCCC----ccCHHHHHHHHHhccCCCCCccCCCC-------------------
Q 026025           70 GFAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIW-------------------  124 (244)
Q Consensus        70 gf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~-------------------  124 (244)
                      ||+..  +...+++..|..++.+|..++...    ...++++++||.++|++||||+....                   
T Consensus       362 gW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~  441 (631)
T 2sqc_A          362 GFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT  441 (631)
T ss_dssp             CBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSS
T ss_pred             CCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCccc
Confidence            44322  234578999999999998877632    11367899999999999999964211                   


Q ss_pred             CCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC-CCCHHHHH
Q 026025          125 GEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH-HVDKDLLG  202 (244)
Q Consensus       125 ~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~-~~~~~~~~  202 (244)
                      ..+++..|..++.+|..++.. ....++++++||+++|++||||....+ ..+.+.|..++.+|..++... ...+++++
T Consensus       442 d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav  520 (631)
T 2sqc_A          442 DPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKAL  520 (631)
T ss_dssp             CCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence            014455677777777777642 235689999999999999999965443 345667888888888887532 34578999


Q ss_pred             HHHHcccccCccccCCC----------CCCCCccccchhhHhhhhhh
Q 026025          203 WWLCERQVKSGGLNGRP----------EKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       203 ~wL~~~Q~~~GGf~~~~----------~~~~d~~ys~~~l~~l~~~~  239 (244)
                      +||+++|++||||+..+          ....|.+.|+|+|..|...-
T Consensus       521 ~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag  567 (631)
T 2sqc_A          521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGG  567 (631)
T ss_dssp             HHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence            99999999999997543          23567788999998887653

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.78  E-value=6.4e-18  Score=143.85  Aligned_cols=179  Identities=16%  Similarity=0.115  Sum_probs=130.6

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCCCC----
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG----  125 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~~~----  125 (244)
                      .++++++++++|++||||+.+++.+++...|.+++.+|..+.....++   ++++++||.+ .|++||+|.+...-    
T Consensus        40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~  119 (277)
T 1qqf_A           40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE  119 (277)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence            445666799999999999999999999999999999999887653444   5789999996 99999999865321    


Q ss_pred             ---------CCChhhHHHHHHHHHhhcc-----C--ChhhHHHHHHHHHhcCCC--------------------------
Q 026025          126 ---------EVDTRFSYIAICCLSILQR-----L--DKINVDKAVEYIVSCKNL--------------------------  163 (244)
Q Consensus       126 ---------~~d~~~ty~al~~l~~l~~-----~--~~~~~e~~~~~i~~~Q~~--------------------------  163 (244)
                               ++++..|..++.+|...+.     .  ....++++++||.++++.                          
T Consensus       120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~  199 (277)
T 1qqf_A          120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLT  199 (277)
T ss_dssp             GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred             hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence                     1123334444444443322     1  134678999999998764                          


Q ss_pred             -------CCCCCCCCCCC-cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhh
Q 026025          164 -------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMM  235 (244)
Q Consensus       164 -------dGGf~~~p~~~-~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l  235 (244)
                             +|++-..++.. .++..|.+|+-+|...+.  ..+.++.++||.++|+++|||..       +-.+..+|.+|
T Consensus       200 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL  270 (277)
T 1qqf_A          200 KFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQATFMVFQAL  270 (277)
T ss_dssp             HHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HHHHHHHHHHH
T ss_pred             HHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------chHHHHHHHHH
Confidence                   44454444422 266788889888877764  46789999999999999999975       35566888888


Q ss_pred             hhhhhc
Q 026025          236 EHSCRS  241 (244)
Q Consensus       236 ~~~~~~  241 (244)
                      ..|..+
T Consensus       271 ~~y~~~  276 (277)
T 1qqf_A          271 AQYRAD  276 (277)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888653

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.77  E-value=1.2e-17  Score=144.36  Aligned_cols=180  Identities=17%  Similarity=0.119  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCCCC----
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG----  125 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~~~----  125 (244)
                      .++++++++++|++||||+.+++.+++...|.+++.+|..+.....++   ++++++||.+ .|++||+|.+...-    
T Consensus        56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~  135 (310)
T 2wy7_A           56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE  135 (310)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHh
Confidence            455667799999999999999998999999999999999887643444   5789999996 99999999865321    


Q ss_pred             ---------CCChhhHHHHHHHHHhhcc-----C--ChhhHHHHHHHHHhcCCC--------------------------
Q 026025          126 ---------EVDTRFSYIAICCLSILQR-----L--DKINVDKAVEYIVSCKNL--------------------------  163 (244)
Q Consensus       126 ---------~~d~~~ty~al~~l~~l~~-----~--~~~~~e~~~~~i~~~Q~~--------------------------  163 (244)
                               ++++..|..++.+|...+.     .  ....++++++||.++|+.                          
T Consensus       136 ~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~  215 (310)
T 2wy7_A          136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN  215 (310)
T ss_dssp             GGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             hcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence                     1123334444444443322     1  134678999999998763                          


Q ss_pred             -------CCCCCCCCCCC-cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhh
Q 026025          164 -------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMM  235 (244)
Q Consensus       164 -------dGGf~~~p~~~-~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l  235 (244)
                             +|+|-..++.. .++..|.+|+.+|...+.  ..+.++.++||.++|+++|||..       +-.+..+|.+|
T Consensus       216 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL  286 (310)
T 2wy7_A          216 KFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQAL  286 (310)
T ss_dssp             HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHH
T ss_pred             HHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHH
Confidence                   34443334322 266789999988887764  46789999999999999999964       24556788999


Q ss_pred             hhhhhcc
Q 026025          236 EHSCRSS  242 (244)
Q Consensus       236 ~~~~~~~  242 (244)
                      ..|.++.
T Consensus       287 ~~y~~~~  293 (310)
T 2wy7_A          287 AQYQKDA  293 (310)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHc
Confidence            9887654

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.63  E-value=9.5e-15  Score=124.20  Aligned_cols=173  Identities=14%  Similarity=0.132  Sum_probs=120.4

Q ss_pred             HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-cccCCCCcCCCCCC------
Q 026025            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------   77 (244)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------   77 (244)
                      +.++.+.++|++||+|..|..+++..+.|.+++.+|..+....   +...+++++||.+ .|++||+|....+.      
T Consensus        42 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~  121 (277)
T 1qqf_A           42 KGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMI  121 (277)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhc
Confidence            3334488899999999999888899999999999999887532   2246789999996 99999999765321      


Q ss_pred             -------CCchhhHHHHHHHHHHhcC-----CC--ccCHHHHHHHHHhccCC----------------------------
Q 026025           78 -------DPHVLYTLSAVQVLALFDK-----VD--ILDADKVSNYIVGLQNE----------------------------  115 (244)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~-----~~--~~~~~~~~~~l~~~q~~----------------------------  115 (244)
                             ++++..|++++.+|...+.     .+  ...++++++||.+++++                            
T Consensus       122 g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l  201 (277)
T 1qqf_A          122 GGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKF  201 (277)
T ss_dssp             GGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHH
T ss_pred             CCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence                   2335567777777755421     11  22467899999998764                            


Q ss_pred             -----CCCccCCCCCC-CChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 026025          116 -----DGSFSGDIWGE-VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (244)
Q Consensus       116 -----dGgf~~~~~~~-~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~  189 (244)
                           +|.|...++.. .++..|.+++.++...+.  ....+++++||.+.|+++|||..       ...|..||-||+-
T Consensus       202 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~  272 (277)
T 1qqf_A          202 LNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQATFMVFQALAQ  272 (277)
T ss_dssp             HHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------chHHHHHHHHHHH
Confidence                 34443333210 134445555555544444  35688999999999999999964       3468788777764

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.60  E-value=7.8e-15  Score=129.62  Aligned_cols=182  Identities=15%  Similarity=0.117  Sum_probs=126.7

Q ss_pred             CHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCcc---CHHHHHHHHHhccCCCCCccCCCCC----
Q 026025           53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGSFSGDIWG----  125 (244)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~~q~~dGgf~~~~~~----  125 (244)
                      ..+++++||+++|++||||+.+++..++...|.+++.+|..+...-.+   .++++++||.+.|++||+|.+....    
T Consensus        92 ~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~  171 (367)
T 1hzf_A           92 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRS  171 (367)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccccccccc
Confidence            356788999999999999999988788889999999999887643222   3688999999999999999865221    


Q ss_pred             --------CCChhhHHHHHHHHHhhccC------------ChhhHHHHHHHHHhc--CC---------------------
Q 026025          126 --------EVDTRFSYIAICCLSILQRL------------DKINVDKAVEYIVSC--KN---------------------  162 (244)
Q Consensus       126 --------~~d~~~ty~al~~l~~l~~~------------~~~~~e~~~~~i~~~--Q~---------------------  162 (244)
                              ++++..|.+++.+|...+..            ....++++++||.+.  ++                     
T Consensus       172 ~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~  251 (367)
T 1hzf_A          172 MQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPA  251 (367)
T ss_dssp             GGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCH
T ss_pred             ccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcH
Confidence                    12344455566666544421            123567888998665  21                     


Q ss_pred             ---------------CCCC---CCCCC---------------------CCC-cchhHHHHHHHHHHHhCCCCCCCHHHHH
Q 026025          163 ---------------LDGG---FGCTP---------------------GGE-SHSGQIFCCVGALAIAGALHHVDKDLLG  202 (244)
Q Consensus       163 ---------------~dGG---f~~~p---------------------~~~-~~~~~T~~al~aL~~l~~~~~~~~~~~~  202 (244)
                                     .+|+   |....                     ... .++..|.|||-+|...+. +....++.+
T Consensus       252 ~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv  330 (367)
T 1hzf_A          252 DLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMADQAS  330 (367)
T ss_dssp             HHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhHHHH
Confidence                           1344   54321                     112 267889999988876542 234578899


Q ss_pred             HHHHcccccCccccCCCCCCCCccccchhhHhhhhhhhcc
Q 026025          203 WWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRSS  242 (244)
Q Consensus       203 ~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~~  242 (244)
                      +||.+.|+.+|||..       +-.+..+|.+|..|....
T Consensus       331 ~WL~~qrn~~Ggw~s-------TqdTvvAL~AL~~y~~~~  363 (367)
T 1hzf_A          331 AWLTRQGSFQGGFRS-------TQDTVIALDALSAYWIAS  363 (367)
T ss_dssp             HHHHHHTTSTTCSCS-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcCCCCCccc-------HHHHHHHHHHHHHHHHHc
Confidence            999999999999963       355668888888886543

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.59  E-value=3.7e-14  Score=122.48  Aligned_cols=175  Identities=15%  Similarity=0.128  Sum_probs=121.3

Q ss_pred             HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-cccCCCCcCCCCCC------
Q 026025            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------   77 (244)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------   77 (244)
                      +.++.+.++|++||+|..|..+++..+.|.+++.+|..+....   ....+++++||.+ .|++||+|....+.      
T Consensus        58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~  137 (310)
T 2wy7_A           58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI  137 (310)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhc
Confidence            3444488899999999999888889999999999999887532   2246789999996 99999999765321      


Q ss_pred             -------CCchhhHHHHHHHHHHhcC-----CC--ccCHHHHHHHHHhccCC----------------------------
Q 026025           78 -------DPHVLYTLSAVQVLALFDK-----VD--ILDADKVSNYIVGLQNE----------------------------  115 (244)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~-----~~--~~~~~~~~~~l~~~q~~----------------------------  115 (244)
                             ++++..|++++.+|...+.     .+  ...++++++||.+++++                            
T Consensus       138 g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l  217 (310)
T 2wy7_A          138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF  217 (310)
T ss_dssp             GGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence                   2335567777777765422     11  22467899999998764                            


Q ss_pred             -----CCCccCCCCCC-CChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 026025          116 -----DGSFSGDIWGE-VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (244)
Q Consensus       116 -----dGgf~~~~~~~-~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~  189 (244)
                           +|.|...+... .++..|.+|+.++...+.  ...++++++||.+.|+++|||..       ...|..||-||..
T Consensus       218 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~  288 (310)
T 2wy7_A          218 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ  288 (310)
T ss_dssp             HHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHHHH
Confidence                 23343332210 134455555555545554  35788999999999999999954       2567778777775


Q ss_pred             hC
Q 026025          190 AG  191 (244)
Q Consensus       190 l~  191 (244)
                      ..
T Consensus       289 y~  290 (310)
T 2wy7_A          289 YQ  290 (310)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.47  E-value=1.1e-12  Score=115.92  Aligned_cols=177  Identities=17%  Similarity=0.167  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCC-----
Q 026025            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH-----   77 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~-----   77 (244)
                      ++++++++.+.|++||+|..|..+.++.+.|.+++.+|..++..   +....+++++||.+.|++||+|......     
T Consensus        93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~  172 (367)
T 1hzf_A           93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM  172 (367)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence            45778889999999999998887778889999999999888742   2235788999999999999999765221     


Q ss_pred             -------CCchhhHHHHHHHHHHhcCC--C----------ccCHHHHHHHHHhc--cC----------------------
Q 026025           78 -------DPHVLYTLSAVQVLALFDKV--D----------ILDADKVSNYIVGL--QN----------------------  114 (244)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~~--~----------~~~~~~~~~~l~~~--q~----------------------  114 (244)
                             ++.+..|.+++.+|...+..  +          ...++++++||.+.  ++                      
T Consensus       173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~  252 (367)
T 1hzf_A          173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPAD  252 (367)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHH
T ss_pred             cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHH
Confidence                   23466778888887654421  1          11357788888665  21                      


Q ss_pred             --------------CCCC---ccCCCC---------------------CC-CChhhHHHHHHHHHhhccCChhhHHHHHH
Q 026025          115 --------------EDGS---FSGDIW---------------------GE-VDTRFSYIAICCLSILQRLDKINVDKAVE  155 (244)
Q Consensus       115 --------------~dGg---f~~~~~---------------------~~-~d~~~ty~al~~l~~l~~~~~~~~e~~~~  155 (244)
                                    .+|+   |.....                     .. .++..|-+|+.++...+. +....+++++
T Consensus       253 ~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv~  331 (367)
T 1hzf_A          253 LRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMADQASA  331 (367)
T ss_dssp             HHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhHHHHH
Confidence                          1333   322100                     01 134444444444433322 2345788999


Q ss_pred             HHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHh
Q 026025          156 YIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (244)
Q Consensus       156 ~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l  190 (244)
                      ||.+.|+.+|||..       ...|..||-||...
T Consensus       332 WL~~qrn~~Ggw~s-------TqdTvvAL~AL~~y  359 (367)
T 1hzf_A          332 WLTRQGSFQGGFRS-------TQDTVIALDALSAY  359 (367)
T ss_dssp             HHHHHTTSTTCSCS-------HHHHHHHHHHHHHH
T ss_pred             HHHhCcCCCCCccc-------HHHHHHHHHHHHHH
Confidence            99999999999964       24577777777643

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=2.9e-12  Score=129.61  Aligned_cols=179  Identities=11%  Similarity=0.091  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCc-cC---HHHHHHHHHhccCCCCCccCCCC-----
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD---ADKVSNYIVGLQNEDGSFSGDIW-----  124 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~---~~~~~~~l~~~q~~dGgf~~~~~-----  124 (244)
                      .+.++++++++|++||||+.+++..++...|.+++.+|..+..... ++   ++++++||.+.|.+||+|.+...     
T Consensus       874 i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~  953 (1325)
T 2pn5_A          874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKE  953 (1325)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHH
T ss_pred             HHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChh
Confidence            4456667799999999999999999999999999999998865432 44   57899999999999999976432     


Q ss_pred             --CCCChhhHHHHHHHHHhh--ccC---ChhhHHHHHHHHHhcCCC-CCCCCCC--------------------------
Q 026025          125 --GEVDTRFSYIAICCLSIL--QRL---DKINVDKAVEYIVSCKNL-DGGFGCT--------------------------  170 (244)
Q Consensus       125 --~~~d~~~ty~al~~l~~l--~~~---~~~~~e~~~~~i~~~Q~~-dGGf~~~--------------------------  170 (244)
                        +..+.+.+|++.+..+++  +..   ....++++++||.+.|+. +++|+..                          
T Consensus       954 ~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~ 1033 (1325)
T 2pn5_A          954 MQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSF 1033 (1325)
T ss_dssp             HHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCE
T ss_pred             hcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhh
Confidence              122233444443322333  222   123567888898887654 5554211                          


Q ss_pred             --C-------CCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhhc
Q 026025          171 --P-------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRS  241 (244)
Q Consensus       171 --p-------~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~  241 (244)
                        .       ...++...|.+|+.+|...+.  .....+.++||.+.|..+|||.-       +-.+.|+|.+|..|.++
T Consensus      1034 ~~~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~AL~~y~~~ 1104 (1325)
T 2pn5_A         1034 IDADKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKALTKMAEK 1104 (1325)
T ss_dssp             EETTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHHHHHHHHH
T ss_pred             hccCCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHHHHHHHHH
Confidence              0       113466778888877766653  23467899999999988999952       34566889999888654

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=99.37  E-value=8.5e-12  Score=121.97  Aligned_cols=178  Identities=17%  Similarity=0.153  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCCC-----
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW-----  124 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~~-----  124 (244)
                      .+.++++++++|++||||+.+++..++...|.+++.+|..+.....++   ++++++||.+ .|.+||+|.....     
T Consensus       301 i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~  380 (915)
T 2hr0_B          301 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE  380 (915)
T ss_dssp             HHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSC
T ss_pred             HHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchh
Confidence            345677899999999999999988899999999999998876543344   6889999995 9999999975321     


Q ss_pred             ---C-----CCChhhHHHHHHHHHhhccC-------ChhhHHHHHHHHHhcCCC--------------------------
Q 026025          125 ---G-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL--------------------------  163 (244)
Q Consensus       125 ---~-----~~d~~~ty~al~~l~~l~~~-------~~~~~e~~~~~i~~~Q~~--------------------------  163 (244)
                         +     +.++..|..++.+|...+..       ....++++++||.+.+..                          
T Consensus       381 m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~  460 (915)
T 2hr0_B          381 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN  460 (915)
T ss_dssp             CCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             hcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHH
Confidence               0     12333344455555544432       123567888888776432                          


Q ss_pred             -------CCC-CCCCCCC-CcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHh
Q 026025          164 -------DGG-FGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLM  234 (244)
Q Consensus       164 -------dGG-f~~~p~~-~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~  234 (244)
                             +|. |.. ++. ..+...|.+|+.+|...+..  ....+.++||.+.|+.+|||..       +-.+..+|.+
T Consensus       461 ~L~~~~~~~~~w~~-~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~S-------TQdT~~Al~A  530 (915)
T 2hr0_B          461 KFLTTAKDKNRWED-PGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQA  530 (915)
T ss_dssp             HHHHTSBTTTBCCC-SSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCS-------HHHHHHHHHH
T ss_pred             HHHhhccCCCCCCC-CCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc-------hhhHHHHHHH
Confidence                   232 322 222 13667889999888877653  4578899999999999999953       2335677888


Q ss_pred             hhhhhhc
Q 026025          235 MEHSCRS  241 (244)
Q Consensus       235 l~~~~~~  241 (244)
                      |..|..+
T Consensus       531 L~~y~~~  537 (915)
T 2hr0_B          531 LAQYQKD  537 (915)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777643

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=99.22  E-value=1.1e-10  Score=118.62  Aligned_cols=220  Identities=8%  Similarity=0.030  Sum_probs=142.9

Q ss_pred             HHHHHHHHHcccCCCCcccccc----ccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCC----
Q 026025            7 DKHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI----   75 (244)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~----~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~----   75 (244)
                      ++.++.+...|++||+|..|..    +.++.|.|.+++..|......   ++...+++++||.+.|++||.|....    
T Consensus       986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A          986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp             HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred             HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence            4566677779999999998864    458899999999999987742   23357889999999999999997431    


Q ss_pred             -----CCCCchhhHHHHHHHHHHhcCCC-ccCHHHHHHHHHhccCC--CCCccCCCCCCCChhhHHHHHHHHHhhccCCh
Q 026025           76 -----GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNE--DGSFSGDIWGEVDTRFSYIAICCLSILQRLDK  147 (244)
Q Consensus        76 -----~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~q~~--dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~  147 (244)
                           |.++++..|.+++.+|...+... ...++++++||.+....  +|.      ...+.-...-+..+|++.|.  .
T Consensus      1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~------~~~~~y~~AllAyAlal~g~--~ 1137 (1451)
T 4acq_A         1066 NAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGD------HGSHVYTKALLAYAFALAGN--Q 1137 (1451)
T ss_dssp             GGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSC------SSSTHHHHHHHHHHHHHHTC--H
T ss_pred             hhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccc------ccCChHHHHHHHHHHHhcCC--h
Confidence                 12356778899999988776432 22368899999875221  110      00122212223344555664  2


Q ss_pred             hhHHHHHHHHHhcCCCCCC---CCCCC------------C-CCcchhHHHHHHHHHHHhCCC----CCCCHHHHHHHHHc
Q 026025          148 INVDKAVEYIVSCKNLDGG---FGCTP------------G-GESHSGQIFCCVGALAIAGAL----HHVDKDLLGWWLCE  207 (244)
Q Consensus       148 ~~~e~~~~~i~~~Q~~dGG---f~~~p------------~-~~~~~~~T~~al~aL~~l~~~----~~~~~~~~~~wL~~  207 (244)
                      ...+.+.+-|.+....+||   |....            . ...+...|.|||-+|..++..    +.......++||.+
T Consensus      1138 ~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~ 1217 (1451)
T 4acq_A         1138 DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITK 1217 (1451)
T ss_dssp             HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTT
T ss_pred             hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence            2234456666655555565   43321            1 124667899999777766531    11235678999999


Q ss_pred             ccccCccccCCCCCCCCccccchhhHhhhhhhhc
Q 026025          208 RQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRS  241 (244)
Q Consensus       208 ~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~  241 (244)
                      .|+..|||..       +=.+..+|.+|..|..+
T Consensus      1218 qr~~~Ggf~S-------TQdTv~aL~ALa~Y~~~ 1244 (1451)
T 4acq_A         1218 QQNAQGGFSS-------TQDTVVALHALSKYGAA 1244 (1451)
T ss_dssp             CCCTTSCCSS-------HHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCccc-------HHHHHHHHHHHHHHHHh
Confidence            9999999963       22456777788777664

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=99.16  E-value=5.2e-10  Score=109.36  Aligned_cols=174  Identities=14%  Similarity=0.133  Sum_probs=116.1

Q ss_pred             HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-cccCCCCcCCCCCC------
Q 026025            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------   77 (244)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------   77 (244)
                      +.++.++..|++||+|..|...++..|.|.+++..|..+....   ....+++++||.+ .|++||.|......      
T Consensus       303 ~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~  382 (915)
T 2hr0_B          303 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI  382 (915)
T ss_dssp             HHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCC
T ss_pred             HHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhc
Confidence            3445567789999999999888889999999999998886432   2347789999995 99999999654221      


Q ss_pred             -------CCchhhHHHHHHHHHHhcCC-----Cc--cCHHHHHHHHHhccCC----------------------------
Q 026025           78 -------DPHVLYTLSAVQVLALFDKV-----DI--LDADKVSNYIVGLQNE----------------------------  115 (244)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~~-----~~--~~~~~~~~~l~~~q~~----------------------------  115 (244)
                             ++.+..|.+++.+|...+..     +.  ..++++++||.+.+..                            
T Consensus       383 gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L  462 (915)
T 2hr0_B          383 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF  462 (915)
T ss_dssp             CSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             CCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence                   23455677777777665432     11  1256788888876543                            


Q ss_pred             -----CCCccCCCCC-CCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 026025          116 -----DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (244)
Q Consensus       116 -----dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~  189 (244)
                           +|.|...+.. ..++..|.+|+.++...+..  ....+.++||.+.|+.+|||..       ...|..|+-||..
T Consensus       463 ~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~S-------TQdT~~Al~AL~~  533 (915)
T 2hr0_B          463 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ  533 (915)
T ss_dssp             HHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCS-------HHHHHHHHHHHHH
T ss_pred             HhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc-------hhhHHHHHHHHHH
Confidence                 2222111111 01344555555555555543  3578899999999999999963       2447777777765


Q ss_pred             h
Q 026025          190 A  190 (244)
Q Consensus       190 l  190 (244)
                      .
T Consensus       534 y  534 (915)
T 2hr0_B          534 Y  534 (915)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=99.06  E-value=9.7e-10  Score=96.74  Aligned_cols=159  Identities=17%  Similarity=0.044  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCC--------------------------------------CCCchhhHHHHHHHHHHhc
Q 026025           54 EEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALFD   95 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l~   95 (244)
                      -+++.+.|+..|+++|||.....                                      .+.+...|..++.+|..+.
T Consensus        83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~  162 (408)
T 1r76_A           83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV  162 (408)
T ss_dssp             HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence            56789999999999999976321                                      1123356888888887653


Q ss_pred             CC-C--c-----cCHHHHHHHHHhccCCCCCccCCC-CCC--------CChhhHHHHHHHHHhhccC-------------
Q 026025           96 KV-D--I-----LDADKVSNYIVGLQNEDGSFSGDI-WGE--------VDTRFSYIAICCLSILQRL-------------  145 (244)
Q Consensus        96 ~~-~--~-----~~~~~~~~~l~~~q~~dGgf~~~~-~~~--------~d~~~ty~al~~l~~l~~~-------------  145 (244)
                      .. .  .     --+.++++||.+.|.+||||.... ...        .| -.|--++..|..++.-             
T Consensus       163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~  241 (408)
T 1r76_A          163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT  241 (408)
T ss_dssp             HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence            32 1  1     125789999999999999997532 110        12 1122234444444331             


Q ss_pred             -ChhhHHHHHHHHHhcCCC-CCCCCCCCC------C---------Cc---chhHHHHHHHHHHHhCCCCCC-----CHHH
Q 026025          146 -DKINVDKAVEYIVSCKNL-DGGFGCTPG------G---------ES---HSGQIFCCVGALAIAGALHHV-----DKDL  200 (244)
Q Consensus       146 -~~~~~e~~~~~i~~~Q~~-dGGf~~~p~------~---------~~---~~~~T~~al~aL~~l~~~~~~-----~~~~  200 (244)
                       ....++|+++||++.|.+ ||.|- +-+      .         |+   .+..|..+|..  +|....+.     .+++
T Consensus       242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~--LM~~~~~~~~~~~aI~~  318 (408)
T 1r76_A          242 RALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLF--LMEIEAPSDAVKQAIRG  318 (408)
T ss_dssp             HHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHH--HTTSSSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHH--HccCCCCCHHHHHHHHH
Confidence             123578999999999999 99886 311      0         11   11223333322  33322211     3789


Q ss_pred             HHHHHHcccccCcccc
Q 026025          201 LGWWLCERQVKSGGLN  216 (244)
Q Consensus       201 ~~~wL~~~Q~~~GGf~  216 (244)
                      +++||.++|.++|+|.
T Consensus       319 Av~WL~s~Q~~dg~w~  334 (408)
T 1r76_A          319 GVAWLNTSVIRDRAWV  334 (408)
T ss_dssp             HHHHHHHSCCCC----
T ss_pred             HHHHHHHhhcCCCcee
Confidence            9999999999999865

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=98.96  E-value=4.1e-09  Score=106.71  Aligned_cols=172  Identities=15%  Similarity=0.106  Sum_probs=111.4

Q ss_pred             HHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC----CCcCHHHHHHHHHhcccCCCCcCCCCC---------
Q 026025           10 VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILKCQDESGGFAGNIG---------   76 (244)
Q Consensus        10 ~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~----~~~~~~~~i~~l~~~q~~dGgf~~~~~---------   76 (244)
                      ++-+.++|++||+|..|..+++..|.|.+++.+|..+...    +....+++++||.+.|++||.|.....         
T Consensus       878 ~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~  957 (1325)
T 2pn5_A          878 YQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGG  957 (1325)
T ss_dssp             HHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCC
T ss_pred             HHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCc
Confidence            3344779999999999998889999999999999988542    122467899999999999999865321         


Q ss_pred             CCCchhhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCC-CCCccC-----------CC------------------
Q 026025           77 HDPHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNE-DGSFSG-----------DI------------------  123 (244)
Q Consensus        77 ~~~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~-dGgf~~-----------~~------------------  123 (244)
                      .......|++++.+|...+..   ....++++++||.+.+.. +++|..           .+                  
T Consensus       958 ~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~ 1037 (1325)
T 2pn5_A          958 LRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDAD 1037 (1325)
T ss_dssp             SSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETT
T ss_pred             ccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccC
Confidence            112344455555554322211   112356788888887765 555421           00                  


Q ss_pred             ------CCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHh
Q 026025          124 ------WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (244)
Q Consensus       124 ------~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l  190 (244)
                            ...++++.|-+++.+|...+.  ....++.+.||.+.|+.+|||..       ...|.+||-||...
T Consensus      1038 ~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~AL~~y 1101 (1325)
T 2pn5_A         1038 KNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKALTKM 1101 (1325)
T ss_dssp             TTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHHHHHH
T ss_pred             CCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHHHHHH
Confidence                  012344555444444433343  34567889999999999999953       34577777777654

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=98.93  E-value=3e-09  Score=93.64  Aligned_cols=162  Identities=12%  Similarity=0.058  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHcccCCCCcccccc--------------------------------------ccchHHHHHHHHHHHHhhC
Q 026025            6 ADKHVKYIISVEKKKDSFESVVM--------------------------------------EHLRLNGAYWGLTTLDILG   47 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~--------------------------------------~~~~~~~~y~al~~l~llg   47 (244)
                      .++..+.|..-|+++|+|.....                                      ...|...|.-++..|.-+.
T Consensus        83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~  162 (408)
T 1r76_A           83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV  162 (408)
T ss_dssp             HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence            45677889999999999953110                                      1123344666666665543


Q ss_pred             CC----C----CcCHHHHHHHHHhcccCCCCcCCCCCC----CCch----hhHHHHHHHHHHhcC----CC---------
Q 026025           48 KL----D----AVDEEDVISWILKCQDESGGFAGNIGH----DPHV----LYTLSAVQVLALFDK----VD---------   98 (244)
Q Consensus        48 ~~----~----~~~~~~~i~~l~~~q~~dGgf~~~~~~----~~~~----~~T~~al~~L~~l~~----~~---------   98 (244)
                      ..    .    ....+++++||+++|+++|||+.+.-.    ..++    ..|.-+|..|..+..    +.         
T Consensus       163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~  242 (408)
T 1r76_A          163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR  242 (408)
T ss_dssp             HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence            21    1    124678999999999999999887431    1111    245556666655532    11         


Q ss_pred             -ccCHHHHHHHHHhccCC-CCCccCCCCC---------------CC-ChhhHHHHHHHHHhhccCC--h---hhHHHHHH
Q 026025           99 -ILDADKVSNYIVGLQNE-DGSFSGDIWG---------------EV-DTRFSYIAICCLSILQRLD--K---INVDKAVE  155 (244)
Q Consensus        99 -~~~~~~~~~~l~~~q~~-dGgf~~~~~~---------------~~-d~~~ty~al~~l~~l~~~~--~---~~~e~~~~  155 (244)
                       ...++++++||++.|.+ ||+|. +++.               |. -+...=.+-.++.++....  +   ..++++++
T Consensus       243 ~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~  321 (408)
T 1r76_A          243 ALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVA  321 (408)
T ss_dssp             HHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence             11358899999999999 99986 4321               10 1111111212222333222  1   25899999


Q ss_pred             HHHhcCCCCCCCC
Q 026025          156 YIVSCKNLDGGFG  168 (244)
Q Consensus       156 ~i~~~Q~~dGGf~  168 (244)
                      ||.++|++||+|-
T Consensus       322 WL~s~Q~~dg~w~  334 (408)
T 1r76_A          322 WLNTSVIRDRAWV  334 (408)
T ss_dssp             HHHHSCCCC----
T ss_pred             HHHHhhcCCCcee
Confidence            9999999999997

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.89  E-value=3.5e-08  Score=101.80  Aligned_cols=205  Identities=13%  Similarity=0.131  Sum_probs=129.6

Q ss_pred             HHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-cccCCCCcCCCC--------C----
Q 026025           13 IISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNI--------G----   76 (244)
Q Consensus        13 l~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~--------~----   76 (244)
                      ++..|++||+|..|.+.+++.|.|.|++..|..+....   ....+++++||.+ .|+++|.|....        +    
T Consensus      1055 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~ 1134 (1661)
T 2b39_A         1055 QLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRD 1134 (1661)
T ss_dssp             HHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTC
T ss_pred             HHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccc
Confidence            44578899999999888889999999999998876532   2346789999995 999999985431        1    


Q ss_pred             -CCCchhhHHHHHHHHHHhcCC-----Ccc--CHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChh
Q 026025           77 -HDPHVLYTLSAVQVLALFDKV-----DIL--DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKI  148 (244)
Q Consensus        77 -~~~~~~~T~~al~~L~~l~~~-----~~~--~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~  148 (244)
                       .++++..|.+++.+|...+..     ...  .+.++++||.+....   +       .++-....+..+|.+.|..   
T Consensus      1135 ~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~--- 1201 (1661)
T 2b39_A         1135 TREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL--- 1201 (1661)
T ss_dssp             CTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC---
T ss_pred             cccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc---
Confidence             112555667777777654432     111  256788999775332   1       1111111122344555653   


Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCcccc
Q 026025          149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIF  228 (244)
Q Consensus       149 ~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys  228 (244)
                       .+++++.|.+.......|....+...+...|.+|+.++...+..  ......++||.+.|+..|||..-    .|   +
T Consensus      1202 -a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~--~~~~~iv~wL~~qr~~~gg~~ST----qd---T 1271 (1661)
T 2b39_A         1202 -EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDY--DTTPPVVRWLNEQRYYGGGYGST----QA---T 1271 (1661)
T ss_dssp             -CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTSHHHHHHHHHCCTBTTBBCSH----HH---H
T ss_pred             -HHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCcccc----hH---H
Confidence             24556666654442223432111123567888888888777643  44678899999988888999642    22   3


Q ss_pred             chhhHhhhhhhh
Q 026025          229 SQPNLMMEHSCR  240 (244)
Q Consensus       229 ~~~l~~l~~~~~  240 (244)
                      ..+|.+|..|..
T Consensus      1272 ~~Al~AL~~y~~ 1283 (1661)
T 2b39_A         1272 FMVFQALAQYQK 1283 (1661)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            467777777753

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.89  E-value=7.4e-08  Score=92.51  Aligned_cols=210  Identities=13%  Similarity=0.089  Sum_probs=123.8

Q ss_pred             HHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcccCCCCcCCCC--------C----
Q 026025           12 YIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNI--------G----   76 (244)
Q Consensus        12 yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q~~dGgf~~~~--------~----   76 (244)
                      -+.+.|++||+|..|++.+++.|.|.|++.+|.......   +....+.+.||.+.|.+||.|....        +    
T Consensus       376 rll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~  455 (767)
T 4fxk_B          376 RIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG  455 (767)
T ss_dssp             HHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTT
T ss_pred             HHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCC
Confidence            344578899999999988899999999999999887643   2346678899999999999996431        1    


Q ss_pred             CCCchhhHHHHHHHHHHhcCCC-----c-------cCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH-HHHHHHhhc
Q 026025           77 HDPHVLYTLSAVQVLALFDKVD-----I-------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AICCLSILQ  143 (244)
Q Consensus        77 ~~~~~~~T~~al~~L~~l~~~~-----~-------~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~-al~~l~~l~  143 (244)
                      .+.++..|++++.+|...+...     .       ..+.++++||.+....+  +       .+. |+-+ +.-+|.+.+
T Consensus       456 ~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--~-------~~~-y~~Al~ayaL~l~~  525 (767)
T 4fxk_B          456 NDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--L-------LGA-HAAAITAYALSLTK  525 (767)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--C-------CCH-HHHHHHHHHHHHHT
T ss_pred             CccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--c-------CCH-HHHHHHHHHHHHcC
Confidence            1224455666666665433211     0       12466788887654321  1       111 1111 112344444


Q ss_pred             cCChhhHHHHHHHHHhcCCCCCC--CCCCC-C---------------------C-CcchhHHHHHHHHHHHhCCCCCCCH
Q 026025          144 RLDKINVDKAVEYIVSCKNLDGG--FGCTP-G---------------------G-ESHSGQIFCCVGALAIAGALHHVDK  198 (244)
Q Consensus       144 ~~~~~~~e~~~~~i~~~Q~~dGG--f~~~p-~---------------------~-~~~~~~T~~al~aL~~l~~~~~~~~  198 (244)
                      .. ....+.+.+-+...-..+|+  +-..+ +                     . ..++..|.+||-++..... +....
T Consensus       526 ~~-~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~-~~~~a  603 (767)
T 4fxk_B          526 AP-VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMA  603 (767)
T ss_dssp             CT-THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTS-SCHHH
T ss_pred             Cc-HHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCC-chhHH
Confidence            32 12233444455543332222  11111 0                     0 1135678888866654432 23346


Q ss_pred             HHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          199 DLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       199 ~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      +..++||.+.|+..|||..       +--+.++|.+|..|..
T Consensus       604 ~~iv~WL~~Qr~~~Ggf~S-------TQdTv~AL~ALa~y~~  638 (767)
T 4fxk_B          604 DQASAWLTRQGSFQGGFRS-------TQDTVIALDALSAYWI  638 (767)
T ss_dssp             HHHHHHHHHTCCTTSSCSS-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCcC-------HHHHHHHHHHHHHHHH
Confidence            7899999998899999953       1234577777777753

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=98.82  E-value=7.4e-09  Score=88.74  Aligned_cols=153  Identities=19%  Similarity=0.167  Sum_probs=95.0

Q ss_pred             HHHHHHHhcccCCCCcCCCCC-------------CCCchhhHHHHHHHHHHhcCCC-----ccCHHHHHHHHHhccCCCC
Q 026025           56 DVISWILKCQDESGGFAGNIG-------------HDPHVLYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDG  117 (244)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~-------------~~~~~~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~q~~dG  117 (244)
                      .+.+.|+..|+++|||...-.             .+++...|..+|.+|..+....     +-.++++++||.+.|.+||
T Consensus        35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG  114 (332)
T 1gxm_A           35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  114 (332)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence            458889999999999987421             2346677889998887653211     1125789999999999999


Q ss_pred             CccCC-CCC--------CCChhhHHHHHHHHHhhcc----C------------ChhhHHHHHHHHHhcCCCCCCCCCCCC
Q 026025          118 SFSGD-IWG--------EVDTRFSYIAICCLSILQR----L------------DKINVDKAVEYIVSCKNLDGGFGCTPG  172 (244)
Q Consensus       118 gf~~~-~~~--------~~d~~~ty~al~~l~~l~~----~------------~~~~~e~~~~~i~~~Q~~dGGf~~~p~  172 (244)
                      ||... +..        -.| -.|--++..|..++.    .            ....++|+++||++.|.++|||-.+-+
T Consensus       115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg  193 (332)
T 1gxm_A          115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC  193 (332)
T ss_dssp             CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred             CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence            99863 211        012 123334454544432    0            123578999999999999998854421


Q ss_pred             CCcchhHHH----------------HHHHHHH-HhCCCCCC----CHHHHHHHHHcccc
Q 026025          173 GESHSGQIF----------------CCVGALA-IAGALHHV----DKDLLGWWLCERQV  210 (244)
Q Consensus       173 ~~~~~~~T~----------------~al~aL~-~l~~~~~~----~~~~~~~wL~~~Q~  210 (244)
                      . -|.+.|.                -++..+. +++.....    .++++++||.++|+
T Consensus       194 ~-qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~  251 (332)
T 1gxm_A          194 A-QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT  251 (332)
T ss_dssp             S-EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred             c-ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence            1 1111121                1222223 33332211    27899999999998

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=98.69  E-value=2.2e-09  Score=92.02  Aligned_cols=154  Identities=12%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             HHHHHHcccCCCCcccc-------------ccccchHHHHHHHHHHHHhhCCC--C---CcCHHHHHHHHHhcccCCCCc
Q 026025           10 VKYIISVEKKKDSFESV-------------VMEHLRLNGAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESGGF   71 (244)
Q Consensus        10 ~~yl~~~q~~dg~~~~~-------------~~~~~~~~~~y~al~~l~llg~~--~---~~~~~~~i~~l~~~q~~dGgf   71 (244)
                      .+-|..-|+++|||...             .....|...|.-++..|+-+...  .   ....+++++||+++|.++|||
T Consensus        37 Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGW  116 (332)
T 1gxm_A           37 ADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGAL  116 (332)
T ss_dssp             HHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCC
T ss_pred             HHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCc
Confidence            56778899999999641             11234555677777777654321  1   234678999999999999999


Q ss_pred             CCCCCC----CCch----hhHHHHHHHHHHhcC----CC------------ccCHHHHHHHHHhccCCCCCccCCCCC--
Q 026025           72 AGNIGH----DPHV----LYTLSAVQVLALFDK----VD------------ILDADKVSNYIVGLQNEDGSFSGDIWG--  125 (244)
Q Consensus        72 ~~~~~~----~~~~----~~T~~al~~L~~l~~----~~------------~~~~~~~~~~l~~~q~~dGgf~~~~~~--  125 (244)
                      +.+.-.    ..++    ..|.-+|..|..+..    ++            ...++++++||++.|.++|||.+++..  
T Consensus       117 pqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~qy  196 (332)
T 1gxm_A          117 PQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQH  196 (332)
T ss_dssp             BSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEE
T ss_pred             cccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeecccc
Confidence            987321    1111    356667777777642    21            113588999999999999998766432  


Q ss_pred             -------------CCChhhHHHHHHHHH-hhccCChh----hHHHHHHHHHhcCCC
Q 026025          126 -------------EVDTRFSYIAICCLS-ILQRLDKI----NVDKAVEYIVSCKNL  163 (244)
Q Consensus       126 -------------~~d~~~ty~al~~l~-~l~~~~~~----~~e~~~~~i~~~Q~~  163 (244)
                                   |+..-.+.-++.++. +.+.....    .++++++|+.++|++
T Consensus       197 dygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~  252 (332)
T 1gxm_A          197 GALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY  252 (332)
T ss_dssp             CTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred             ccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence                         111111111222222 22322212    489999999999984

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=98.68  E-value=1.3e-07  Score=97.81  Aligned_cols=214  Identities=14%  Similarity=0.058  Sum_probs=129.1

Q ss_pred             HHHHHHHHH-------HcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHh-cccCCCCcCCC
Q 026025            6 ADKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILK-CQDESGGFAGN   74 (244)
Q Consensus         6 ~~~~~~yl~-------~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~-~q~~dGgf~~~   74 (244)
                      +++.++++.       +.|++||+|..|.+.+++.|.|.|++..|..+...   +....+++++||.+ .|++||.|...
T Consensus      1042 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A         1042 KQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp             HHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence            445666644       46789999999977788999999999999877642   22346789999999 99999998543


Q ss_pred             CC--------C------CCchhhHHHHHHHHHHhcCC---C--ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH-
Q 026025           75 IG--------H------DPHVLYTLSAVQVLALFDKV---D--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-  134 (244)
Q Consensus        75 ~~--------~------~~~~~~T~~al~~L~~l~~~---~--~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~-  134 (244)
                      ..        .      ++++..|++++.+|...+..   .  ...+.++++||.+....   +       .++ ++-+ 
T Consensus      1122 ~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~-y~~A~ 1190 (1676)
T 3cu7_A         1122 SQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QST-FTLAI 1190 (1676)
T ss_dssp             SSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCH-HHHHH
T ss_pred             ccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCH-HHHHH
Confidence            11        0      01344556666666543321   0  11256788999775332   1       111 1211 


Q ss_pred             HHHHHHhhccCChhhHHHHHHHHHhcCCCCC------CCCCCC------C---C-CcchhHHHHHHHHHHHhCCCCCCCH
Q 026025          135 AICCLSILQRLDKINVDKAVEYIVSCKNLDG------GFGCTP------G---G-ESHSGQIFCCVGALAIAGALHHVDK  198 (244)
Q Consensus       135 al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dG------Gf~~~p------~---~-~~~~~~T~~al~aL~~l~~~~~~~~  198 (244)
                      +..+|.+.|... ...+++++.|.+....+|      -|...+      +   . ..+...|.+|+-++...+  +....
T Consensus      1191 lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~--~~~~~ 1267 (1676)
T 3cu7_A         1191 SAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLK--DINYV 1267 (1676)
T ss_dssp             HHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcC--ChhHH
Confidence            122334445422 124566677766443222      232221      0   1 125567888887776654  22346


Q ss_pred             HHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          199 DLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       199 ~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      .+.++||.+.|+..|||..-    .|+.   ++|.+|..|..
T Consensus      1268 ~~iv~wL~~qr~~~Gg~~ST----QdT~---~Al~AL~~y~~ 1302 (1676)
T 3cu7_A         1268 NPVIKWLSEEQRYGGGFYST----QDTI---NAIEGLTEYSL 1302 (1676)
T ss_dssp             HHHHHHHHHHSCSSSCCSTT----TTHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCcccc----HHHH---HHHHHHHHHHH
Confidence            67899999988888999743    2333   77777877754

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=98.63  E-value=3.6e-09  Score=108.33  Aligned_cols=206  Identities=13%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             HHHHHHHH-------HcccCCCCccccccccchHHHHHHHHHHHHhhCCC----CCcCHHHHHHHHHh-cccCCCCcCCC
Q 026025            7 DKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILK-CQDESGGFAGN   74 (244)
Q Consensus         7 ~~~~~yl~-------~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~----~~~~~~~~i~~l~~-~q~~dGgf~~~   74 (244)
                      +++.+||+       +.|++||+|..|.+.++..|.|.|++.+|......    ++....++++||.+ +|++||.|...
T Consensus      1026 ~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B         1026 TEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccc
Confidence            34555554       36789999999988788999999999999876642    23357889999997 89999999653


Q ss_pred             C--------C----CCCchhhHHHHHHHHHHhcCC-----C--ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH-
Q 026025           75 I--------G----HDPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-  134 (244)
Q Consensus        75 ~--------~----~~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~-  134 (244)
                      .        |    .+.++.-|.+.+.+|...+..     .  ...+++++.||.+....             +...|. 
T Consensus      1106 ~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~-------------~~~~Y~~ 1172 (1642)
T 3prx_B         1106 APVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK-------------LQRPYTT 1172 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc-------------CCCHHHH
Confidence            2        1    134566666666665433321     0  12367788888764221             111221 


Q ss_pred             HHH--HHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCC-CCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccccc
Q 026025          135 AIC--CLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK  211 (244)
Q Consensus       135 al~--~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~-~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~  211 (244)
                      |++  +|.+.+...   .+.+..+.    ..++-+-..|+ ...++..|.|||-++...+.  .......++||.+.|+.
T Consensus      1173 Ai~aYAl~l~~~~~---~~~l~~l~----~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~--~~~a~~iv~WL~~qr~~ 1243 (1642)
T 3prx_B         1173 ALTAYALAAADQLN---DDRVLMAA----STGRDHWEEYNAHTHNIEGTSYALLALLKMKK--FDQTGPIVRWLTDQNFY 1243 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCch---HHHHHHHH----hcCCCCCCCCCCchHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHhccC
Confidence            111  122334321   11111111    11222222333 23578899999977766543  34567889999999999


Q ss_pred             CccccCCCCCCCCccccchhhHhhhhhhhc
Q 026025          212 SGGLNGRPEKLPDVGIFSQPNLMMEHSCRS  241 (244)
Q Consensus       212 ~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~  241 (244)
                      .|||..--    |   +..+|.+|..|..+
T Consensus      1244 ~Ggf~STQ----d---TvvaLqALa~Y~~~ 1266 (1642)
T 3prx_B         1244 GETYGQTQ----A---TVMAFQALAEYEIQ 1266 (1642)
T ss_dssp             ------------------------------
T ss_pred             CCcccCcH----H---HHHHHHHHHHHHHh
Confidence            99997432    3   34567777776654

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=98.60  E-value=1.3e-06  Score=88.99  Aligned_cols=155  Identities=16%  Similarity=0.063  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCC----CCCchhhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCCCCCccCC--C-
Q 026025           54 EEDVISWILKCQDESGGFAGNIG----HDPHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGD--I-  123 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~dGgf~~~--~-  123 (244)
                      .+++++|++++|++||||+.+++    ..++..-|.+++.+|..+...   +...++++++||.+.|++||+|...  . 
T Consensus       985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~ 1064 (1451)
T 4acq_A          985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLL 1064 (1451)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCS
T ss_pred             HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCccc
Confidence            45678999999999999998864    457889999999999887653   2223688999999999999999742  1 


Q ss_pred             -----CC-CCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC
Q 026025          124 -----WG-EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV  196 (244)
Q Consensus       124 -----~~-~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~  196 (244)
                           ++ +.++..|..++.+|...|.. ....++++++||.+.-..   +.. .....+++..+..-.||++++..  .
T Consensus      1065 ~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~---~~~-~~~~~~~y~~AllAyAlal~g~~--~ 1138 (1451)
T 4acq_A         1065 NNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKT---AQE-GDHGSHVYTKALLAYAFALAGNQ--D 1138 (1451)
T ss_dssp             CGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHH---HTS-SCSSSTHHHHHHHHHHHHHHTCH--H
T ss_pred             chhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhh---ccc-ccccCChHHHHHHHHHHHhcCCh--h
Confidence                 11 23454566667777666653 234688999999865210   100 01123445555555567777642  1


Q ss_pred             CHHHHHHHHHcccccCcc
Q 026025          197 DKDLLGWWLCERQVKSGG  214 (244)
Q Consensus       197 ~~~~~~~wL~~~Q~~~GG  214 (244)
                      ..+.+++=|.+....+||
T Consensus      1139 ~~~~~l~~L~~~a~~~~~ 1156 (1451)
T 4acq_A         1139 KRKEVLKSLNEEAVKKDN 1156 (1451)
T ss_dssp             HHHHHHHHHHHHCCBCSS
T ss_pred             HHHHHHHHHHHHhhccCC
Confidence            234455666555555666

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.49  E-value=7.9e-07  Score=78.66  Aligned_cols=134  Identities=14%  Similarity=0.032  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCC-c----cCHHHHH-
Q 026025           33 LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-I----LDADKVS-  106 (244)
Q Consensus        33 ~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~----~~~~~~~-  106 (244)
                      ....-|++.+|-..|...   .++.+..|...|+ +++|.  .+...++..|..|+++|..+++.. .    ..+++++ 
T Consensus       136 ~Yq~sL~vLALC~~g~~v---~~~~v~~Ll~~~~-~~~~~--~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~  209 (414)
T 2bb6_A          136 YYQYSLGILALCVHQKRV---HDSVVGKLLYAVE-HKPHL--LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALK  209 (414)
T ss_dssp             HHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHH-SSSCS--CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCc---cHHHHHHHHHHhh-ccCcC--CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Confidence            344556777777777654   4567777777665 45553  223457899999999998886421 1    1144444 


Q ss_pred             ---HHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCCh---hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHH
Q 026025          107 ---NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI  180 (244)
Q Consensus       107 ---~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~---~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T  180 (244)
                         ++|.+.|++||+|+       ++.+|-.|+.+|...+....   .+..+++++|++ |.+||+|.       ++-.|
T Consensus       210 ~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~at  274 (414)
T 2bb6_A          210 RVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMI  274 (414)
T ss_dssp             HHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHH
T ss_pred             HHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHH
Confidence               88889999999997       35667778888877776322   266789999999 99999996       33456


Q ss_pred             HHHHHHH
Q 026025          181 FCCVGAL  187 (244)
Q Consensus       181 ~~al~aL  187 (244)
                      .-++-+|
T Consensus       275 aQ~lpaL  281 (414)
T 2bb6_A          275 SQLLPVL  281 (414)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            5555443

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.25  E-value=2.5e-05  Score=80.76  Aligned_cols=141  Identities=18%  Similarity=0.153  Sum_probs=91.3

Q ss_pred             HHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCC--------
Q 026025           56 DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDI--------  123 (244)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~--------  123 (244)
                      .+++-+++.|++||||+.+++.+++..-|.+++.+|..+...-.++   +.++++||.+ .|.+||.|....        
T Consensus      1050 ~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~ 1129 (1661)
T 2b39_A         1050 KGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMI 1129 (1661)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSC
T ss_pred             HHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhc
Confidence            3455567889999999999988899999999999998887653343   5789999995 999999996321        


Q ss_pred             C-----CCCChhhHHHHHHHHHhhccC-----C--hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 026025          124 W-----GEVDTRFSYIAICCLSILQRL-----D--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (244)
Q Consensus       124 ~-----~~~d~~~ty~al~~l~~l~~~-----~--~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~  191 (244)
                      +     .+.++..|..++.+|...+..     .  ...++++++||.+....   +       .+++.....-.+|.+++
T Consensus      1130 gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g 1199 (1661)
T 2b39_A         1130 GGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLG 1199 (1661)
T ss_dssp             CCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTT
T ss_pred             CCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcC
Confidence            1     112454444455555444332     1  23567899999875321   1       23333333334556666


Q ss_pred             CCCCCCHHHHHHHHHcccc
Q 026025          192 ALHHVDKDLLGWWLCERQV  210 (244)
Q Consensus       192 ~~~~~~~~~~~~wL~~~Q~  210 (244)
                      ..    .+++++.|.+...
T Consensus      1200 ~~----a~~~l~~L~~~~~ 1214 (1661)
T 2b39_A         1200 KL----EGDRLTKFLNTAK 1214 (1661)
T ss_dssp             CC----CHHHHHHHHHHSB
T ss_pred             Cc----HHHHHHHHHhhcc
Confidence            43    4666777766543

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.23  E-value=4.1e-06  Score=74.11  Aligned_cols=129  Identities=14%  Similarity=0.042  Sum_probs=81.5

Q ss_pred             HHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC--C---hhhHHHHH----HH
Q 026025           86 SAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--D---KINVDKAV----EY  156 (244)
Q Consensus        86 ~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~---~~~~e~~~----~~  156 (244)
                      .++.+|...+.  .+ ....+.+|...|. +++|...  +..|+-.+-.|+.+|..++.-  .   ...+++++    ++
T Consensus       141 L~vLALC~~g~--~v-~~~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~  214 (414)
T 2bb6_A          141 LGILALCVHQK--RV-HDSVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEK  214 (414)
T ss_dssp             HHHHHHHHTTC--CC-CHHHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--Cc-cHHHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Confidence            35556655554  22 2446666666665 3455421  123555566666666666541  1   12345555    88


Q ss_pred             HHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCC---CCHHHHHHHHHcccccCccccCCCCCCCCccccchhhH
Q 026025          157 IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNL  233 (244)
Q Consensus       157 i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~---~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~  233 (244)
                      |++.|++||+|+       +.+.|..|+.+|...+....   ++..++++||++ |.++|+|+       ++--+.++|-
T Consensus       215 l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~lp  279 (414)
T 2bb6_A          215 ILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQLLP  279 (414)
T ss_dssp             HHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHHHH
T ss_pred             HHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHHHH
Confidence            889999999996       45569999999988875322   355679999998 99999997       3344555554


Q ss_pred             hh
Q 026025          234 MM  235 (244)
Q Consensus       234 ~l  235 (244)
                      +|
T Consensus       280 aL  281 (414)
T 2bb6_A          280 VL  281 (414)
T ss_dssp             HT
T ss_pred             Hh
Confidence            44

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.12  E-value=0.00016  Score=69.23  Aligned_cols=91  Identities=20%  Similarity=0.210  Sum_probs=68.9

Q ss_pred             chHHHHHHHHHHHHhhCCC---CCcC-------HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCcc
Q 026025           31 LRLNGAYWGLTTLDILGKL---DAVD-------EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL  100 (244)
Q Consensus        31 ~~~~~~y~al~~l~llg~~---~~~~-------~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~  100 (244)
                      +.+.-..|++..|...+..   .+..       .+.+++-+++.|++||||+++++.+++..-|.+++.+|..+...-.+
T Consensus       337 s~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~i  416 (767)
T 4fxk_B          337 IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGG  416 (767)
T ss_dssp             GGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSC
T ss_pred             HhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCc
Confidence            3444456777777766652   2222       33455667788999999999999999999999999999988765444


Q ss_pred             C---HHHHHHHHHhccCCCCCccC
Q 026025          101 D---ADKVSNYIVGLQNEDGSFSG  121 (244)
Q Consensus       101 ~---~~~~~~~l~~~q~~dGgf~~  121 (244)
                      |   +..++.||.+.|.+||+|..
T Consensus       417 d~~~i~~a~~wL~~~Q~~~G~f~e  440 (767)
T 4fxk_B          417 SPEKLQETSNWLLSQQQADGSFQD  440 (767)
T ss_dssp             CHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred             chHHHHHHHHHHHHhhhhcccchh
Confidence            4   57788999999999999964

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=97.96  E-value=2.8e-05  Score=68.45  Aligned_cols=112  Identities=12%  Similarity=0.016  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhcc---CC---------hhhHHHHHHHHHhcCCCCCCCCC
Q 026025          102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR---LD---------KINVDKAVEYIVSCKNLDGGFGC  169 (244)
Q Consensus       102 ~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~---~~---------~~~~e~~~~~i~~~Q~~dGGf~~  169 (244)
                      ....+.-|...|+.||+    +   .++-.+..|+.+|..+..   ..         ...+++++++|++.|++||+|+ 
T Consensus       132 ~~~~v~kLl~~~~~~g~----~---~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG-  203 (399)
T 2pmv_A          132 TLPIAVRFAKTLLANSS----P---FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG-  203 (399)
T ss_dssp             HHHHHHHHHHHHHHCCS----C---CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS-
T ss_pred             CHHHHHHHHHHHHccCC----c---ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc-
Confidence            45566667777777742    1   134434444555544433   11         1246788999999999999996 


Q ss_pred             CCCCCcchhHHHHHHHHHHHhCCC--CCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhh
Q 026025          170 TPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMM  235 (244)
Q Consensus       170 ~p~~~~~~~~T~~al~aL~~l~~~--~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l  235 (244)
                            +.+.|.-|+.+|...+..  ..++..++++||++ |..+|+|+       ++--+.+.|-+|
T Consensus       204 ------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQilPaL  257 (399)
T 2pmv_A          204 ------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQILPSL  257 (399)
T ss_dssp             ------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHHHHH
T ss_pred             ------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHHHHh
Confidence                  688899999999999863  33578889999998 99999996       344455555444

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=97.80  E-value=0.00018  Score=74.45  Aligned_cols=141  Identities=13%  Similarity=0.060  Sum_probs=86.9

Q ss_pred             HHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCCC-------CC
Q 026025           58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW-------GE  126 (244)
Q Consensus        58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~~-------~~  126 (244)
                      ++-+++.|++||||+.+.+..++..-|.+++.+|..+...-.++   +.++++||.+ .|.+||.|.....       +.
T Consensus      1053 ~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg 1132 (1676)
T 3cu7_A         1053 MLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGT 1132 (1676)
T ss_dssp             HHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSC
T ss_pred             HHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCC
Confidence            33456789999999999888899999999999998886543343   5788999999 9999999964210       00


Q ss_pred             -------CChhhHHHHHHHHHhhccC-----ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Q 026025          127 -------VDTRFSYIAICCLSILQRL-----DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH  194 (244)
Q Consensus       127 -------~d~~~ty~al~~l~~l~~~-----~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~  194 (244)
                             +++..|..++.+|...+..     ....++++++||.+....   +       .+++.....-.+|.+++.. 
T Consensus      1133 ~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~~- 1201 (1676)
T 3cu7_A         1133 LPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFTLAISAYALSLGDKT- 1201 (1676)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCTT-
T ss_pred             cccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCCc-
Confidence                   1333333344444433332     123567899999764321   1       2222222222334444432 


Q ss_pred             CCC-HHHHHHHHHcccc
Q 026025          195 HVD-KDLLGWWLCERQV  210 (244)
Q Consensus       195 ~~~-~~~~~~wL~~~Q~  210 (244)
                       .. .+++++.|.+...
T Consensus      1202 -~~~a~~~l~~L~~~a~ 1217 (1676)
T 3cu7_A         1202 -HPQFRSIVSALKREAL 1217 (1676)
T ss_dssp             -CHHHHHHHHHHHHHCE
T ss_pred             -hhhHHHHHHHHHhhhh
Confidence             22 5667777777654

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=97.74  E-value=8.7e-05  Score=65.29  Aligned_cols=124  Identities=15%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             HHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcC---CC--c-----c--CHHHHH
Q 026025           39 GLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---VD--I-----L--DADKVS  106 (244)
Q Consensus        39 al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~---~~--~-----~--~~~~~~  106 (244)
                      ++.+|-+.|..   ...+.+.-|...|+.||+       .-++..+..|+++|..+.+   ..  .     +  -+++++
T Consensus       120 ~vLALC~~~~~---v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~  189 (399)
T 2pmv_A          120 AILALCQKNSE---ATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIV  189 (399)
T ss_dssp             HHHHHHHHCHH---HHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC---CCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence            34444455543   356777777788887742       2368888889998888765   11  0     1  147788


Q ss_pred             HHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC--ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHH
Q 026025          107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCV  184 (244)
Q Consensus       107 ~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al  184 (244)
                      ++|.+.|++||+|+       |+.+|--|+.+|...+..  ..-+..++.++|++ |..||+|+       ++-.|.-++
T Consensus       190 ~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQil  254 (399)
T 2pmv_A          190 EKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQIL  254 (399)
T ss_dssp             HHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHH
T ss_pred             HHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHH
Confidence            99999999999997       466777788888777752  12267889999999 99999996       344555555


Q ss_pred             HHH
Q 026025          185 GAL  187 (244)
Q Consensus       185 ~aL  187 (244)
                      =+|
T Consensus       255 PaL  257 (399)
T 2pmv_A          255 PSL  257 (399)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            333

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=97.04  E-value=9.2e-05  Score=76.20  Aligned_cols=107  Identities=15%  Similarity=0.146  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCC----CccCHHHHHHHHHh-ccCCCCCccCCC-----
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV----DILDADKVSNYIVG-LQNEDGSFSGDI-----  123 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~----~~~~~~~~~~~l~~-~q~~dGgf~~~~-----  123 (244)
                      .+.+++-+++.|++||||+.+.+.+++..-|.+++.+|....+.    +...+.++++||.+ +|++||+|....     
T Consensus      1032 i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~ 1111 (1642)
T 3prx_B         1032 IVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSG 1111 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccch
Confidence            33455567778999999999987778899999999998877553    22236889999998 899999996421     


Q ss_pred             ---CC----CCChhhHHHHHHHHHhhccC-------ChhhHHHHHHHHHhc
Q 026025          124 ---WG----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSC  160 (244)
Q Consensus       124 ---~~----~~d~~~ty~al~~l~~l~~~-------~~~~~e~~~~~i~~~  160 (244)
                         ++    +.++..|..++.+|.-.+..       ....+++++.||.+.
T Consensus      1112 ~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B         1112 TMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp             ---------------------------------------------------
T ss_pred             hccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence               11    23444333333333222221       123578899999754

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=96.52  E-value=0.005  Score=59.20  Aligned_cols=103  Identities=19%  Similarity=0.198  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHccc---CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCC--CCc
Q 026025            6 ADKHVKYIISVEK---KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH--DPH   80 (244)
Q Consensus         6 ~~~~~~yl~~~q~---~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~--~~~   80 (244)
                      .++.++-+++..+   .||.++..   .+.++.|.|+..+=. ++..........++||+..|.+||+||.....  .-.
T Consensus        56 ~~~Lie~VK~~l~~~~~~g~~g~~---S~S~YDTAWVAmvp~-~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~  131 (817)
T 3sdr_A           56 AEVLVSEIKAMLNPAITGDGESMI---TPSAYDTAWVARVPA-IDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDR  131 (817)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCCC---CCCHHHHHHHHTCBC-TTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHH
T ss_pred             HHHHHHHHHHHhccccCCCCCccc---ccCHHHhhHHheeec-CCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence            3455666666654   45522212   355677999322212 22222224679999999999999999864321  124


Q ss_pred             hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Q 026025           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ  113 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q  113 (244)
                      +.+|.+++.+|.--+. ....+++++.||.+.-
T Consensus       132 ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl  163 (817)
T 3sdr_A          132 LLATLSCVLVLLKWNV-GDLQVEQGIEFIKSNL  163 (817)
T ss_dssp             HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            7899999999876542 1223678888888753

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=96.09  E-value=0.0078  Score=57.61  Aligned_cols=99  Identities=14%  Similarity=0.176  Sum_probs=60.9

Q ss_pred             HHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCC--Cchh
Q 026025            7 DKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHD--PHVL   82 (244)
Q Consensus         7 ~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~~~~   82 (244)
                      +..++-|++...  .+|..      .+.++.|.|+..+ .-++..........++||+..|.+||+||......  -.+.
T Consensus        34 ~~~~~~i~~~~~~~~~g~~------S~S~YDTAWVamv-p~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~  106 (785)
T 3s9v_A           34 ETLISEIKNMFRCMGYGET------NPSAYDTAWVARI-PAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRIL  106 (785)
T ss_dssp             HHHHHHHHHHHHHCSSCCC------CCCHHHHHHHTTS-BCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCcc------cCcHHHhhHHhcc-ccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHH
Confidence            445555655543  23322      2456679994322 12222212245789999999999999998653221  2378


Q ss_pred             hHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Q 026025           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQ  113 (244)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q  113 (244)
                      +|.+++.+|.--+.. ...+++++.||.+.-
T Consensus       107 ~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~nl  136 (785)
T 3s9v_A          107 ATLACIITLTLWRTG-ETQVQKGIEFFRTQA  136 (785)
T ss_dssp             HHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccC-HHHHHHHHHHHHHHH
Confidence            999999998765422 224678888887653

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=96.02  E-value=0.0069  Score=57.79  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHcccC--CCCccccccccchHHHHHHHHHHHHhh-CCCCCcCHHHHHHHHHhcccCCCCcCCCCCCC--Cc
Q 026025            6 ADKHVKYIISVEKK--KDSFESVVMEHLRLNGAYWGLTTLDIL-GKLDAVDEEDVISWILKCQDESGGFAGNIGHD--PH   80 (244)
Q Consensus         6 ~~~~~~yl~~~q~~--dg~~~~~~~~~~~~~~~y~al~~l~ll-g~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~~   80 (244)
                      ++..++-|++..+.  +|..      .+.++.|.|+..+=... +..........++||+..|.+||+||......  -.
T Consensus        10 ~~~~~~~i~~~~~~~~~g~~------S~S~YDTAWVamvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~   83 (764)
T 3p5p_A           10 ADELVVKIKDMFNALGDGDI------SPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCDR   83 (764)
T ss_dssp             HHHHHHHHHHHHHTCSSCCC------CCCHHHHHHHHHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcc------cCcHHHHHHHHhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence            45556667665543  3322      24566799933321220 22111246789999999999999998643211  24


Q ss_pred             hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Q 026025           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ  113 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q  113 (244)
                      +.+|.+++.+|.--+.. ...+++++.||.+.-
T Consensus        84 ll~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~nl  115 (764)
T 3p5p_A           84 LLNTTNSVIALSVWKTG-HSQVQQGAEFIAENL  115 (764)
T ss_dssp             HHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence            78999999998765421 124688888887653

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=95.92  E-value=0.35  Score=45.79  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=37.2

Q ss_pred             HHHHHHHHcccCCCCccccccc--cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026025            8 KHVKYIISVEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC   64 (244)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~   64 (244)
                      ..++||..-|.+||+|+....-  .-.+-.|.-++.+|.-=+..+ ...++++.||.+.
T Consensus        54 ~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~-~~i~rGl~fl~~n  111 (727)
T 3pya_A           54 SAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLFP-HQCNKGITFFREN  111 (727)
T ss_dssp             HHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHH
Confidence            5789999999999999843210  124555666676666533322 3677888888753

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=95.33  E-value=0.019  Score=54.42  Aligned_cols=96  Identities=14%  Similarity=0.191  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhcccCCCCcCCCCCCCC--c
Q 026025            6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDP--H   80 (244)
Q Consensus         6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~--~   80 (244)
                      ++..++-++++..  .+|...      +.++.|.|+    +++...+ .......++||+..|.+||+||...+...  .
T Consensus        11 ~~~~~~~ir~~l~~~~~g~~S------~S~YDTAWV----Amvp~~~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~   80 (727)
T 3pya_A           11 FKEAVKSVKTILRNLTDGEIT------ISAYDTAWV----ALIDAGDKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDR   80 (727)
T ss_dssp             HHHHHHHHHHHHHTCCSCCCC------CCHHHHHHH----HTCBCSSSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCccc------CcHHHhHHH----hhccCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhH
Confidence            3445555665544  244332      446679994    3332211 11367899999999999999996432221  4


Q ss_pred             hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Q 026025           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGL  112 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~  112 (244)
                      +.+|.+++.+|.--+- ..-.+++++.||.+.
T Consensus        81 ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~n  111 (727)
T 3pya_A           81 LINTLACVVALRSWNL-FPHQCNKGITFFREN  111 (727)
T ss_dssp             HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            6899999999876432 112467888888764

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=94.99  E-value=0.066  Score=51.49  Aligned_cols=101  Identities=18%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhccc---CCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCC-CCC-
Q 026025           54 EEDVISWILKCQD---ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWG-EVD-  128 (244)
Q Consensus        54 ~~~~i~~l~~~q~---~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~-~~d-  128 (244)
                      .++.++-|+.+.+   .||.++.   ..+.+..|.++ +...-.+.........+++||...|.+||||+..... ..| 
T Consensus        56 ~~~Lie~VK~~l~~~~~~g~~g~---~S~S~YDTAWV-Amvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~  131 (817)
T 3sdr_A           56 AEVLVSEIKAMLNPAITGDGESM---ITPSAYDTAWV-ARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDR  131 (817)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCC---CCCCHHHHHHH-HTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHH
T ss_pred             HHHHHHHHHHHhccccCCCCCcc---cccCHHHhhHH-heeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence            4456777777654   5552332   24678888882 2211122222334578999999999999999853221 011 


Q ss_pred             hhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025          129 TRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (244)
Q Consensus       129 ~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~  159 (244)
                      +..|-+++.+|.--+ ..+..+++++.||.+
T Consensus       132 ll~TlAcvlAL~~w~-~~~~~i~~Gl~fl~~  161 (817)
T 3sdr_A          132 LLATLSCVLVLLKWN-VGDLQVEQGIEFIKS  161 (817)
T ss_dssp             HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Confidence            334444444443323 234567889999976

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=94.69  E-value=0.046  Score=52.36  Aligned_cols=100  Identities=20%  Similarity=0.258  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCC-CCCC-hhh
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIW-GEVD-TRF  131 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~~~d-~~~  131 (244)
                      .+..++.|+++.+.- |++.   ..+.+..|.++.++ .-.+......-..+++||...|.+||||+.... ...| +..
T Consensus        33 ~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAWVamv-p~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~  107 (785)
T 3s9v_A           33 IETLISEIKNMFRCM-GYGE---TNPSAYDTAWVARI-PAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILA  107 (785)
T ss_dssp             HHHHHHHHHHHHHHC-SSCC---CCCCHHHHHHHTTS-BCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcC-CCCc---ccCcHHHhhHHhcc-ccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHH
Confidence            445666666654321 2221   24678888883222 112222233457899999999999999986422 2224 445


Q ss_pred             HHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025          132 SYIAICCLSILQRLDKINVDKAVEYIVS  159 (244)
Q Consensus       132 ty~al~~l~~l~~~~~~~~e~~~~~i~~  159 (244)
                      |-+++.+|.--+. .+..+++++.||.+
T Consensus       108 TlAcvlAL~~w~~-~~~~i~~Gl~fl~~  134 (785)
T 3s9v_A          108 TLACIITLTLWRT-GETQVQKGIEFFRT  134 (785)
T ss_dssp             HHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccc-CHHHHHHHHHHHHH
Confidence            5555555543332 34567888888875

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=94.04  E-value=0.11  Score=49.57  Aligned_cols=100  Identities=18%  Similarity=0.203  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHh--cCCCccCHHHHHHHHHhccCCCCCccCCCC-CCCC-h
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF--DKVDILDADKVSNYIVGLQNEDGSFSGDIW-GEVD-T  129 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l--~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~~~d-~  129 (244)
                      .+..++.|+++.+.- |++.   ..+.+..|.++.+ ..-.  +......-..+++||...|.+||||+.... ...| +
T Consensus        10 ~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAWVam-vp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l   84 (764)
T 3p5p_A           10 ADELVVKIKDMFNAL-GDGD---ISPSAYDTAWVAR-LATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCDRL   84 (764)
T ss_dssp             HHHHHHHHHHHHHTC-SSCC---CCCCHHHHHHHHH-CEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCc---ccCcHHHHHHHHh-CccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHHHH
Confidence            456677777665432 2222   2467888888322 2122  221222357799999999999999985321 1111 3


Q ss_pred             hhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026025          130 RFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (244)
Q Consensus       130 ~~ty~al~~l~~l~~~~~~~~e~~~~~i~~  159 (244)
                      ..|-+++.+|.--+ ..+..+++++.||.+
T Consensus        85 l~TlAcvlAL~~w~-~~~~~i~~Gl~fl~~  113 (764)
T 3p5p_A           85 LNTTNSVIALSVWK-TGHSQVQQGAEFIAE  113 (764)
T ss_dssp             HHHHHHHHHHHHTT-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Confidence            34444444443322 234567889999975

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=83.84  E-value=11  Score=33.59  Aligned_cols=162  Identities=12%  Similarity=0.048  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhcc--cCCCCcCCCCCCCCc--hhhHHHHHHHHHHhcCCC--cc--CHHHHH----HHHHhccCC-CCCcc
Q 026025           54 EEDVISWILKCQ--DESGGFAGNIGHDPH--VLYTLSAVQVLALFDKVD--IL--DADKVS----NYIVGLQNE-DGSFS  120 (244)
Q Consensus        54 ~~~~i~~l~~~q--~~dGgf~~~~~~~~~--~~~T~~al~~L~~l~~~~--~~--~~~~~~----~~l~~~q~~-dGgf~  120 (244)
                      .+...+||...+  +++|||.........  +...|+++-.|..+....  ..  -.+.++    .....++.+ +|-|.
T Consensus       170 a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~  249 (445)
T 3k11_A          170 IQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYR  249 (445)
T ss_dssp             HHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEEC
T ss_pred             HHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEe
Confidence            345667888877  678999765332222  234456666665543211  11  122222    222333433 35443


Q ss_pred             CC----CCCCCC---hhhHHHHHHHH-HhhccCC---h------hhHHHHHHHHHhcCCCCCCCCCCCCC---CcchhHH
Q 026025          121 GD----IWGEVD---TRFSYIAICCL-SILQRLD---K------INVDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQI  180 (244)
Q Consensus       121 ~~----~~~~~d---~~~ty~al~~l-~~l~~~~---~------~~~e~~~~~i~~~Q~~dGGf~~~p~~---~~~~~~T  180 (244)
                      ..    ....+.   .|..-|++.++ ..+..+.   +      ...++.++.++++|.+||.|......   ..+...|
T Consensus       250 Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaT  329 (445)
T 3k11_A          250 HGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSAT  329 (445)
T ss_dssp             SEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHH
T ss_pred             eeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHH
Confidence            21    101111   23333333333 2333221   1      23567889999999999999765543   2333333


Q ss_pred             HHHHHHHH---HhCCCCC----CCHHHHHHHHHcccccCccc
Q 026025          181 FCCVGALA---IAGALHH----VDKDLLGWWLCERQVKSGGL  215 (244)
Q Consensus       181 ~~al~aL~---~l~~~~~----~~~~~~~~wL~~~Q~~~GGf  215 (244)
                      ...+.+|.   .++.++.    ...+++.+.|..+-+++|-.
T Consensus       330 Amfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l  371 (445)
T 3k11_A          330 AIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQV  371 (445)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCB
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            33333332   2333322    12456788888776777744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	7e-92
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	2e-14
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	8e-08
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	5e-07
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	1e-77
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	7e-27
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	2e-25
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	4e-73
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	2e-25
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	3e-25
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	7e-07
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	4e-08
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	0.001
d2sqca1	352	a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla	0.003

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  271 bits (694), Expect = 7e-92
 Identities = 130/223 (58%), Positives = 173/223 (77%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I 
Sbjct: 11  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 70

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GD
Sbjct: 71  SCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD 130

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           IWGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+C
Sbjct: 131 IWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC 190

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           C G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 191 CTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 233

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K +++++S       F             Y     L I  +L  V+ + +  W+ + Q 
Sbjct: 159 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 218

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
            SGG  G     P V Y+   +  L +  ++  +D +K+ ++I+  Q+E+     D  G+
Sbjct: 219 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGD 278

Query: 127 -VDTRFSYIAICCLSILQ--RLDKIN 149
            VD   +   I  LS+L   ++  ++
Sbjct: 279 MVDPFHTLFGIAGLSLLGEEQIKPVS 304

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (118), Expect = 8e-08
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDPHVLYTLSAVQVLAL 93
            ++W L +L I+G+L  +D E + S+IL CQD E+GGFA   G      +TL  +  L+L
Sbjct: 235 YSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSL 294

Query: 94  FDKVDILDADKVSN 107
             +  I     V  
Sbjct: 295 LGEEQIKPVSPVFC 308

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.3 bits (112), Expect = 5e-07
 Identities = 13/80 (16%), Positives = 34/80 (42%)

Query: 146 DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWL 205
           D + ++K  +YI S  +    +            ++  +  + + G LH ++K+ +  ++
Sbjct: 10  DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFI 69

Query: 206 CERQVKSGGLNGRPEKLPDV 225
              Q + GG++      P +
Sbjct: 70  KSCQHECGGVSASIGHDPHL 89

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  238 bits (607), Expect = 1e-77
 Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 8/229 (3%)

Query: 3   ELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILG-KLDAVDEEDVISW 60
            L  +KH  Y+   + +  D++E   ++  R    YW L +L++L   +  +   DV  +
Sbjct: 52  VLQREKHFHYLKRGLRQLTDAYEC--LDASRPWLCYWILHSLELLDEPIPQIVATDVCQF 109

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDG 117
           +  CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DG
Sbjct: 110 LELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDG 169

Query: 118 SFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHS 177
           SF   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H 
Sbjct: 170 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 229

Query: 178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDV 225
           G  FC + AL I      ++   L  W+  RQ++  GG  GR  KL D 
Sbjct: 230 GYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDG 278

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 7e-27
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 18/207 (8%)

Query: 37  YWGLTTLDILGKLDAVDEED---VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLAL 93
           Y  +  L I+G  +A D  +   ++ ++   +   G F  ++G +  V     A  V +L
Sbjct: 134 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 193

Query: 94  FDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA 153
            + +     +  + +I   QN +G   G    E    +++  +  L IL+R   +N+   
Sbjct: 194 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 253

Query: 154 VEYIVSC-KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD------------- 199
           ++++ S     +GGF             F   G L +     H   D             
Sbjct: 254 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 313

Query: 200 -LLGWWLCERQVKSGGLNGRPEKLPDV 225
            L  + L   Q  +GGL  +P K  D 
Sbjct: 314 ALQEYILMCCQCPAGGLLDKPGKSRDF 340

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 2e-25
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K ++Y+ S+++   SF   V   + +  AY   +   +   +     E    WI +CQ+
Sbjct: 155 EKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQN 214

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWG 125
             GG  G  G + H  YT   +  L +  +   L+   +  ++   Q   +G F G    
Sbjct: 215 WEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNK 274

Query: 126 EVDTRFSYIAICCLSILQRLDK-------------INVDKAVEYIVSC-KNLDGGFGCTP 171
            VD  +S+     L +L R                 +     EYI+ C +   GG    P
Sbjct: 275 LVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKP 334

Query: 172 GGES---HSGQIFCCVGALAIAG 191
           G      H+     C+  L+IA 
Sbjct: 335 GKSRDFYHT---CYCLSGLSIAQ 354

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  224 bits (571), Expect = 4e-73
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 37/256 (14%)

Query: 3   ELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI 61
           +   D+HV++    ++   + + S  +E  RL  A++ L+ LD+L  LD V+++D+I WI
Sbjct: 2   DFLRDRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWI 59

Query: 62  LKCQ--------------------------DESGGFAGNIGHDPHVLYTLSAVQVLA-LF 94
              Q                                  +     H+  T + +  L  L 
Sbjct: 60  YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 119

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSYIAICCLSILQRLDKINVDKA 153
           D +  +D +     +  LQ EDGSF       E D RF Y A C   +L     +++ KA
Sbjct: 120 DDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKA 179

Query: 154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ 209
           + YI    + D G     G ESH G  FC + +L + G L  V    + + +  W   RQ
Sbjct: 180 ISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 239

Query: 210 VKSGGLNGRPEKLPDV 225
               G +GRP K  D 
Sbjct: 240 --QNGYHGRPNKPVDT 253

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 2e-25
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)

Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALF 94
           Y GL+ L ILG  L  VD+E  ++ +   Q E G F     G +  + +   A  +  + 
Sbjct: 109 YTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYML 168

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           +    +D  K  +YI    + D   +     E     ++  I  L ++ +L+++  +K +
Sbjct: 169 NNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKEL 228

Query: 155 EYIVS--CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL-GWWLCERQVK 211
             I          G+   P     +   F     L +     + + +    + L  +   
Sbjct: 229 NRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRL 288

Query: 212 SGGLNGRPEKLPDV 225
            GG    P+  PD 
Sbjct: 289 VGGFAKWPDSHPDA 302

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.3 bits (247), Expect = 3e-25
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 14/200 (7%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVV---MEHLRLNGAYWGLTTLDILGKLDAVDEEDV 57
           +  +  +  +  + +++ +  SF +V       +R    Y       +L     +D +  
Sbjct: 122 LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMR--FVYCASCICYMLNNWSGMDMKKA 179

Query: 58  ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG--LQNE 115
           IS+I +      G A   G + H   T   +  L L  K++ + ++K  N I    +  +
Sbjct: 180 ISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 239

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGFGCTPGGE 174
              + G     VDT +S+     L +L+     N +K   YI+S ++ L GGF   P   
Sbjct: 240 QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSH 299

Query: 175 S---HSGQIFCCVGALAIAG 191
               H+   +  +  L++  
Sbjct: 300 PDALHA---YFGICGLSLME 316

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (111), Expect = 7e-07
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDP---HVLYTLSAVQVL 91
           ++W   TL +L      + E   ++IL  QD   GGFA      P   H  + +     L
Sbjct: 256 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICG---L 312

Query: 92  ALFDKVDILDADKVSN 107
           +L ++  I       N
Sbjct: 313 SLMEESGICKVHPALN 328

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 4e-08
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 49/205 (23%)

Query: 56  DVISWILKCQDESGGFA--------------------GNIGHDPHVLY-TLSAVQVLALF 94
           D ++ +L  ++  GGFA                    G+I  D   +  T + +Q L  F
Sbjct: 201 DAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYF 260

Query: 95  DK--------VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD 146
            K               +   +    Q  DGS+ G  WG   T  ++  +   + + +  
Sbjct: 261 HKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQTY 319

Query: 147 KIN-----VDKAVEYIVSCKNLDGGF----------GCTPGGESHSGQIFCCVGALAIAG 191
           +       V +A ++++S +  DGG+                +S        +  L    
Sbjct: 320 RDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVR 379

Query: 192 ALHH--VDKDLLGWWLCERQVKSGG 214
                  ++ +    L E+Q+ +G 
Sbjct: 380 HPDIEAQERGVR--CLLEKQLPNGD 402

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 17/147 (11%), Positives = 45/147 (30%), Gaps = 16/147 (10%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF- 94
            Y+     +             + +  + Q   G + G+         T   ++  A   
Sbjct: 258 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMG 316

Query: 95  ----DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY----------IAICCLS 140
               D     +  +  ++++  Q  DG +  D     + R+             A+  L 
Sbjct: 317 QTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLM 376

Query: 141 ILQRLDKINVDKAVEYIVSCKNLDGGF 167
            ++  D    ++ V  ++  +  +G +
Sbjct: 377 AVRHPDIEAQERGVRCLLEKQLPNGDW 403

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 55  EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVS-NYIVGLQ 113
              + ++ + Q   G + G      ++  T + V  L            + + +++   Q
Sbjct: 191 RRAVEYLKREQKPDGSWFGR-WGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQ 249

Query: 114 NEDGSFSGDIWGEVDTRF----------SYIAICCLSILQRLDKINVDKAVEYIVSCKNL 163
           N DG +  D     D  +          +  A+  L    R +     + V+Y+V  +  
Sbjct: 250 NPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP 309

Query: 164 DGGF 167
           DGG+
Sbjct: 310 DGGW 313

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.95
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.95
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.91
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.82
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.59
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.44
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.95
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.91
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	98.89
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	98.75
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.69
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.36
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	98.36
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	98.34
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.18
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.13

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-58  Score=401.32  Aligned_cols=237  Identities=55%  Similarity=1.052  Sum_probs=225.6

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (244)
                      +|.+++|++||+++.....++.++..++++++.+||++.+|++||...+.+++++++||++||++||||++.+++.+|+.
T Consensus        11 ~l~~~~H~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~sL~lLg~l~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l~   90 (325)
T d3dssb1          11 TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLL   90 (325)
T ss_dssp             SCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHH
T ss_pred             HHHHHHHHHHHHHhcccCCCccceehhhhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCCCCcCCCCCCcccHH
Confidence            68999999999998766667888889999999999999999999987777899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (244)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~  162 (244)
                      .||+|+.+|.+++..+.++++++++||.++|++||||.+.+.+++|+++||+|++++.++|..+.++++++++||++||+
T Consensus        91 ~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQn  170 (325)
T d3dssb1          91 YTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN  170 (325)
T ss_dssp             HHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcC
Confidence            99999999999998888999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhh
Q 026025          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       163 ~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                      +||||+..|+.|+|+++||||+++|.+++.++..+.+++++||.+||.++|||+|||||.+|+|||||.+.+|..+-
T Consensus       171 ~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~W~~~~l~~L~  247 (325)
T d3dssb1         171 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIG  247 (325)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTT
T ss_pred             CcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999988899999999999999999999999999999999999998887654

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-57  Score=402.50  Aligned_cols=236  Identities=30%  Similarity=0.469  Sum_probs=216.0

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhcccCCCCcCCCCCCCCch
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~   81 (244)
                      .|.+++|++|++++.+. -+-.+...|.+++|.+||++.+|++||... ...++++++||.+||+++|||++.+++.+|+
T Consensus        52 ~L~r~~H~~y~~~~L~~-lp~~~~~lD~~r~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hl  130 (401)
T d2h6fb1          52 VLQREKHFHYLKRGLRQ-LTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHL  130 (401)
T ss_dssp             CCCHHHHHHHHHHHTTE-ECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCH
T ss_pred             cccHHHHHHHHHHHHHh-CCHHhhccccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCCCcch
Confidence            48899999999987552 223455568999999999999999999753 3457889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcC---CCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHH
Q 026025           82 LYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIV  158 (244)
Q Consensus        82 ~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~  158 (244)
                      .+||+|+.+|.+++.   ++.+|++++++||.++|++||||...+++++|+|+||||++++.+++.+++.+++++++||+
T Consensus       131 a~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~  210 (401)
T d2h6fb1         131 APTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIA  210 (401)
T ss_dssp             HHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999986   46789999999999999999999999999999999999999999999988888999999999


Q ss_pred             hcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccc-cCccccCCCCCCCCccccchhhHhhhh
Q 026025          159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGIFSQPNLMMEH  237 (244)
Q Consensus       159 ~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~~~~d~~ys~~~l~~l~~  237 (244)
                      +||++||||+..|+.|+|+++|||||++|.++++.+.++++++++||.+||. .+|||+|||||.+|+|||||.+.+|..
T Consensus       211 scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~l  290 (401)
T d2h6fb1         211 RCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL  290 (401)
T ss_dssp             HHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHH
T ss_pred             HccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999889999999999999995 589999999999999999998777766


Q ss_pred             hh
Q 026025          238 SC  239 (244)
Q Consensus       238 ~~  239 (244)
                      +.
T Consensus       291 L~  292 (401)
T d2h6fb1         291 LH  292 (401)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-54  Score=373.49  Aligned_cols=234  Identities=28%  Similarity=0.453  Sum_probs=206.2

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCC---------CCc--
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES---------GGF--   71 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~d---------Ggf--   71 (244)
                      +|.+++|++|++++... -+..+...|.++++.+||+|.+|++||.....+++++++||++||..+         |||  
T Consensus         2 ~f~~~kH~~y~~~~l~~-lp~~~~~~D~~R~~~~Yw~l~sL~lL~~l~~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~g   80 (346)
T d1n4qb_           2 DFLRDRHVRFFQRCLQV-LPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRG   80 (346)
T ss_dssp             CCCHHHHHHHHHHHHHE-ECGGGGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECS
T ss_pred             cccHHHHHHHHHHHHhc-CCHHHHHHHhhhHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhccccccccCccccCccC
Confidence            57899999999987653 334566678999999999999999999877778999999999999543         233  


Q ss_pred             ---------------CCCCCCCCchhhHHHHHHHHHHhcC-CCccCHHHHHHHHHhccCCCCCccCCC-CCCCChhhHHH
Q 026025           72 ---------------AGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYI  134 (244)
Q Consensus        72 ---------------~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~q~~dGgf~~~~-~~~~d~~~ty~  134 (244)
                                     +..+++.+|+.+||+|+.+|.++++ ++.+|++++++||.++|++||||...+ ++|.|+|+|||
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~  160 (346)
T d1n4qb_          81 SSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYC  160 (346)
T ss_dssp             SSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHH
T ss_pred             cccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHHHHH
Confidence                           3344567899999999999999964 678899999999999999999997644 57999999999


Q ss_pred             HHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC----CHHHHHHHHHcccc
Q 026025          135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQV  210 (244)
Q Consensus       135 al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~----~~~~~~~wL~~~Q~  210 (244)
                      |++++.+|+..++++++++++||++||+.||||+..|+.|+|+++|||||++|.++++++.+    +++++++||.+|| 
T Consensus       161 A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~~~~~~~~~l~~WL~~Rq-  239 (346)
T d1n4qb_         161 ASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ-  239 (346)
T ss_dssp             HHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB-
T ss_pred             HHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhcc-
Confidence            99999999988888999999999999999999999999999999999999999999986443    6789999999998 


Q ss_pred             cCccccCCCCCCCCccccchhhHhhhhhh
Q 026025          211 KSGGLNGRPEKLPDVGIFSQPNLMMEHSC  239 (244)
Q Consensus       211 ~~GGf~~~~~~~~d~~ys~~~l~~l~~~~  239 (244)
                       +|||+|||||.+|+|||||.+.+|..+-
T Consensus       240 -~gGf~GR~nK~~D~CYs~W~~~~l~iL~  267 (346)
T d1n4qb_         240 -QNGYHGRPNKPVDTCYSFWVGATLKLLK  267 (346)
T ss_dssp             -SSSBCSSTTSCCCTTHHHHHHHHHHHTT
T ss_pred             -cCCcCCCCCCccchHHHHHHHHHHHHcc
Confidence             8999999999999999999888776653

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-46  Score=326.04  Aligned_cols=238  Identities=20%  Similarity=0.298  Sum_probs=225.2

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026025            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (244)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (244)
                      +.++++.++||.++|++||+|....++.+++..||+++.+|.+++.....+++++++||+++|++||||...++.++++.
T Consensus        59 ~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l~~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r  138 (325)
T d3dssb1          59 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR  138 (325)
T ss_dssp             GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHH
Confidence            46789999999999999999998877889999999999999999877667899999999999999999999899999999


Q ss_pred             hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026025           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (244)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~  162 (244)
                      .||+|+.++.+++..+.++++++++||.+||+.||||+..|+.|+|..+|||++++|.+++.++..+.+++++|+.++|.
T Consensus       139 ~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~  218 (325)
T d3dssb1         139 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL  218 (325)
T ss_dssp             HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCC
Confidence            99999999999998888899999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-ccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       163 ~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      ++|||.++|++.+|++||||++++|.+|+..+.+|.+++++||+.+| .+.|||+..|++.||.+|||.+|..|+++..
T Consensus       219 ~~GGf~GR~~K~~D~cys~W~~~~l~~L~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLsl~~~  297 (325)
T d3dssb1         219 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE  297 (325)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred             CCCCcCCCCCCCCchHHHHHHHHHHHHcCccccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999988899999999999996 7789999999999999999999999887653

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-44  Score=316.50  Aligned_cols=237  Identities=18%  Similarity=0.235  Sum_probs=219.6

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026025            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (244)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (244)
                      ..+++.++||.++|+++|||....++.+++..||+|+.+|.++|..   ..++++++++||.++|++||||...++.+++
T Consensus       101 ~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D  180 (401)
T d2h6fb1         101 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVD  180 (401)
T ss_dssp             HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBS
T ss_pred             HHHHHHHHHHHHHcCCCCCcCCCCCCCcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCcc
Confidence            4577899999999999999998888889999999999999999974   3468999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026025           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (244)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~  160 (244)
                      +..||+|+.++.+++..+..+++++++||.+||+.||||+..|+.|+|..+||||+++|.+++.++.++++++++|+.++
T Consensus       181 ~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~R  260 (401)
T d2h6fb1         181 VRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSR  260 (401)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHc
Confidence            99999999999999988888899999999999999999999999999999999999999999998888999999999999


Q ss_pred             CCC-CCCCCCCCCCCcchhHHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHcc-cccCccccCCCCCCCCc
Q 026025          161 KNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCER-QVKSGGLNGRPEKLPDV  225 (244)
Q Consensus       161 Q~~-dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~wL~~~-Q~~~GGf~~~~~~~~d~  225 (244)
                      |.+ +|||.++|++.+|++|+||+.++|.+++..             ..+|.+++.+||+.+ |+++|||+..|++.+|.
T Consensus       261 Q~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~  340 (401)
T d2h6fb1         261 QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF  340 (401)
T ss_dssp             BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred             CCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCc
Confidence            965 899999999999999999999999999742             136899999999887 79999999999999999


Q ss_pred             cccchhhHhhhhhhh
Q 026025          226 GIFSQPNLMMEHSCR  240 (244)
Q Consensus       226 ~ys~~~l~~l~~~~~  240 (244)
                      +|||..|..|+..+.
T Consensus       341 yHT~y~L~gLSl~~~  355 (401)
T d2h6fb1         341 YHTCYCLSGLSIAQH  355 (401)
T ss_dssp             HHHHHHHHHHHHHHE
T ss_pred             cHHHHHHHHHHhcCC
Confidence            999999988887764

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.7e-42  Score=298.39  Aligned_cols=235  Identities=16%  Similarity=0.210  Sum_probs=210.4

Q ss_pred             ccHHHHHHHHHHcccCCCCc--------------------------cccccccchHHHHHHHHHHHHhhCCC-CCcCHHH
Q 026025            4 LAADKHVKYIISVEKKKDSF--------------------------ESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEED   56 (244)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~--------------------------~~~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~   56 (244)
                      .++++.++|+.++|..++.+                          .....+.+.+..||+|+.+|.+++.. ..+++++
T Consensus        50 ~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~gs~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~~  129 (346)
T d1n4qb_          50 VNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEA  129 (346)
T ss_dssp             SCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHH
T ss_pred             ccHHHHHHHHHHHhccccccccCccccCccCcccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHHHH
Confidence            46789999999999654432                          11223567899999999999999964 4568999


Q ss_pred             HHHHHHhcccCCCCcCCC-CCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHH
Q 026025           57 VISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIA  135 (244)
Q Consensus        57 ~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~a  135 (244)
                      +++||.++|++||||... .+.++++..||+|+.++.+++..+.++++++++||.+||+.||||+..|+.|+|..+||||
T Consensus       130 i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCa  209 (346)
T d1n4qb_         130 CLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCG  209 (346)
T ss_dssp             HHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHH
Confidence            999999999999999765 4679999999999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhhccCChh----hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccc-c
Q 026025          136 ICCLSILQRLDKI----NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-V  210 (244)
Q Consensus       136 l~~l~~l~~~~~~----~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q-~  210 (244)
                      +++|.+++.++.+    +++++++|+.+.|  +|||.++|++.+|++|+||+.++|.+|+..+.+|.+++.+||+.+| .
T Consensus       210 vasL~ll~~~~~~~~~~~~~~l~~WL~~Rq--~gGf~GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~q~  287 (346)
T d1n4qb_         210 IASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDR  287 (346)
T ss_dssp             HHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCT
T ss_pred             HHHHHHhcccccccchhhHHHHHHHHHhcc--cCCcCCCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHHHHcCC
Confidence            9999999975433    7889999999888  7999999999999999999999999999888899999999999996 7


Q ss_pred             cCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          211 KSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       211 ~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      +.|||+..|++.||++|||..|..|+.+..
T Consensus       288 ~~GGf~~~p~~~pD~~HT~~~l~gLsl~~~  317 (346)
T d1n4qb_         288 LVGGFAKWPDSHPDALHAYFGICGLSLMEE  317 (346)
T ss_dssp             TTCSBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred             CCCCcCCCCCCCCcHHHHHHHHHHHHHcCC
Confidence            899999999999999999999999987654

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.95  E-value=2.3e-27  Score=206.91  Aligned_cols=235  Identities=18%  Similarity=0.156  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHccc-------------CCCCcccccc--ccchHHHHHHHHHHHHhhCCCCC----cCHHHHHHHHHhccc
Q 026025            6 ADKHVKYIISVEK-------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDA----VDEEDVISWILKCQD   66 (244)
Q Consensus         6 ~~~~~~yl~~~q~-------------~dg~~~~~~~--~~~~~~~~y~al~~l~llg~~~~----~~~~~~i~~l~~~q~   66 (244)
                      ..|+++||++.|.             ++|+|.+...  ..++...|..++.+|..+.....    ...+++++||+++||
T Consensus        55 l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn  134 (352)
T d2sqca1          55 LVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS  134 (352)
T ss_dssp             HHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhcCCCCCChhhhcCCCCCCccccccCCCCCCccccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhc
Confidence            4688999999873             3466543221  23556667777777766654431    236689999999999


Q ss_pred             CCCCcCCCCC-------------------CCCchhhHHHHHHHHHHhcCCC-ccCHHHHHHHHHhccCCCCCccCCCCCC
Q 026025           67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGE  126 (244)
Q Consensus        67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~q~~dGgf~~~~~~~  126 (244)
                      +||||+.+..                   ..+....|..++.+|...+..+ ...++++++||.+.|++||+|.++++ .
T Consensus       135 ~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~-~  213 (352)
T d2sqca1         135 SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-V  213 (352)
T ss_dssp             TTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-S
T ss_pred             CCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccCC-C
Confidence            9999985421                   2355677888888887665321 22379999999999999999987653 2


Q ss_pred             CChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCC----------CCCcchhHHHHHHHHHHHhCCCCC
Q 026025          127 VDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGALHH  195 (244)
Q Consensus       127 ~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p----------~~~~~~~~T~~al~aL~~l~~~~~  195 (244)
                      ..+..|+.++.+|..+|.. ....++|+++||+++|++||||+..+          ...+++..|.+|+.+|...+..+.
T Consensus       214 ~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~~~  293 (352)
T d2sqca1         214 NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAES  293 (352)
T ss_dssp             SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSS
T ss_pred             CcchHHHHHHHHHHhcccccchHHHHHHHHHHHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCc
Confidence            3444566677777777753 34568999999999999999997542          345788899999999988876655


Q ss_pred             CCHHHHHHHHHcccccCccccC-CCC-C-CCCccc----cc---hhhHhhhhhhhc
Q 026025          196 VDKDLLGWWLCERQVKSGGLNG-RPE-K-LPDVGI----FS---QPNLMMEHSCRS  241 (244)
Q Consensus       196 ~~~~~~~~wL~~~Q~~~GGf~~-~~~-~-~~d~~y----s~---~~l~~l~~~~~~  241 (244)
                      ..++++++||+++|+++|||.- .+. - ++..||    +|   |||.+|+.|.|.
T Consensus       294 ~~i~ra~~~L~~~Q~~dG~w~~~~~~g~~f~~~~~~~y~~y~~~f~~~aL~~y~~~  349 (352)
T d2sqca1         294 EAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQA  349 (352)
T ss_dssp             HHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCcceecccccccceecccccchHHHHHHHHHHHHH
Confidence            5689999999999999999963 222 1 344444    22   999999999875

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.3e-27  Score=208.81  Aligned_cols=237  Identities=16%  Similarity=0.144  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHcccC--------------CCCcccccc--ccchHHHHHHHHHHHHhhCCC-----C---CcCHHHHHHHH
Q 026025            6 ADKHVKYIISVEKK--------------KDSFESVVM--EHLRLNGAYWGLTTLDILGKL-----D---AVDEEDVISWI   61 (244)
Q Consensus         6 ~~~~~~yl~~~q~~--------------dg~~~~~~~--~~~~~~~~y~al~~l~llg~~-----~---~~~~~~~i~~l   61 (244)
                      .+++.+||+..|..              .|+|.+...  ..+++..|.-++.+|.++...     .   .....++++||
T Consensus       127 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wL  206 (448)
T d1w6ka1         127 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL  206 (448)
T ss_dssp             HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCcCCCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHH
Confidence            56788999988753              245554322  246677788888888765421     1   12356799999


Q ss_pred             HhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCC--C------ccCHHHHHHHHHhc
Q 026025           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV--D------ILDADKVSNYIVGL  112 (244)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~--~------~~~~~~~~~~l~~~  112 (244)
                      +++||+||||+.+..                     ..+.+..|..++.+|..++..  +      ...++++++||.+.
T Consensus       207 l~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~  286 (448)
T d1w6ka1         207 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ  286 (448)
T ss_dssp             HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHcc
Confidence            999999999986532                     246777899999999877431  1      11268899999999


Q ss_pred             cCCCCCccCCCCCCCChhhHHHHHHHHHhhccCC-----hhhHHHHHHHHHhcCCCCCCCCCC----------CCCCcch
Q 026025          113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGGFGCT----------PGGESHS  177 (244)
Q Consensus       113 q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-----~~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~  177 (244)
                      |++||||.++++ ...+..|++++.+|...|...     ...++|+++||+++|++||||+..          ++..+++
T Consensus       287 Q~~DGsW~g~wg-~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~  365 (448)
T d1w6ka1         287 QRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI  365 (448)
T ss_dssp             SCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred             CCCCCcccccCC-CcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcH
Confidence            999999988664 234555667777777777532     246899999999999999999764          3567899


Q ss_pred             hHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCC--CCCCCCccc-cc------hhhHhhhhhhhccC
Q 026025          178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR--PEKLPDVGI-FS------QPNLMMEHSCRSSS  243 (244)
Q Consensus       178 ~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~--~~~~~d~~y-s~------~~l~~l~~~~~~~~  243 (244)
                      ..|.|||.+|...+..+...++++++||+++|+++|+|.-.  ++.++-.|| .|      |||.+|+.|.++.+
T Consensus       366 ~~TAwAl~aL~~ag~~~~~~v~rgv~~L~~~Q~~~G~W~~~~~~g~f~~~~~l~Y~~Y~~~fpl~AL~ry~~~~~  440 (448)
T d1w6ka1         366 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLYP  440 (448)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCCCCCCCCceeeeecccceeecCCcchHHHHHHHHHHHHhCC
Confidence            99999999998888665567899999999999999999532  233445554 22      99999999998765

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.91  E-value=2.2e-23  Score=181.48  Aligned_cols=231  Identities=18%  Similarity=0.138  Sum_probs=162.5

Q ss_pred             cHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccc-------------CCCC
Q 026025            5 AADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQD-------------ESGG   70 (244)
Q Consensus         5 ~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~-------------~dGg   70 (244)
                      .++|+++||++.|++||+|....  .+.+|.|-+++.+|..-|... .....++++||.++|.             +.||
T Consensus         7 ~i~rav~~L~~~q~~dG~w~~~~--~s~vwdTala~~Al~eaG~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Gg   84 (352)
T d2sqca1           7 TLDRAVEYLLSCQKDEGYWWGPL--ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGG   84 (352)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCCCE--CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCC
T ss_pred             HHHHHHHHHHHhcCCCCceeCCC--CCcHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCc
Confidence            36789999999999999985322  356788999998887777543 2247789999999883             2477


Q ss_pred             cCCC--CCCCCchhhHHHHHHHHHHhcCCCc----cCHHHHHHHHHhccCCCCCccCC-CC---------------C---
Q 026025           71 FAGN--IGHDPHVLYTLSAVQVLALFDKVDI----LDADKVSNYIVGLQNEDGSFSGD-IW---------------G---  125 (244)
Q Consensus        71 f~~~--~~~~~~~~~T~~al~~L~~l~~~~~----~~~~~~~~~l~~~q~~dGgf~~~-~~---------------~---  125 (244)
                      |+..  ....|+...|..++.+|..+...+.    ..++++++||.++|++||||..- +.               .   
T Consensus        85 w~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d  164 (352)
T d2sqca1          85 FAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTD  164 (352)
T ss_dssp             BCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSC
T ss_pred             cccccCCCCCCccccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccC
Confidence            7654  3356788888888888766543321    12578999999999999999631 10               0   


Q ss_pred             CCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-CCCCHHHHHH
Q 026025          126 EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGW  203 (244)
Q Consensus       126 ~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-~~~~~~~~~~  203 (244)
                      .+....|..++.++..++.. ....++++++||.++|++||+|.... ..++.+.|+.++.+|..++.. ....++++++
T Consensus       165 ~~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~-~~~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~  243 (352)
T d2sqca1         165 PPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW-GVNYLYGTGAVVSALKAVGIDTREPYIQKALD  243 (352)
T ss_dssp             CCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSS-BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccC-CCCcchHHHHHHHHHHhcccccchHHHHHHHH
Confidence            11222344444444444432 24568999999999999999997654 346778899999999998863 2344789999


Q ss_pred             HHHcccccCccccCCCCCC----------CCccccchhhHhhhhh
Q 026025          204 WLCERQVKSGGLNGRPEKL----------PDVGIFSQPNLMMEHS  238 (244)
Q Consensus       204 wL~~~Q~~~GGf~~~~~~~----------~d~~ys~~~l~~l~~~  238 (244)
                      ||+++|+++|||+..+...          .++.-+-|++..|...
T Consensus       244 ~L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a  288 (352)
T d2sqca1         244 WVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAG  288 (352)
T ss_dssp             HHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHT
T ss_pred             HHHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhc
Confidence            9999999999997544332          2333344777777543

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.9e-19  Score=157.72  Aligned_cols=229  Identities=12%  Similarity=0.112  Sum_probs=160.4

Q ss_pred             HHHHHHHHcccCCCCcccc---ccccchHHHHHHHHHHHHhhCCC-CC---cCHHHHHHHHHhcccCC------------
Q 026025            8 KHVKYIISVEKKKDSFESV---VMEHLRLNGAYWGLTTLDILGKL-DA---VDEEDVISWILKCQDES------------   68 (244)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~---~~~~~~~~~~y~al~~l~llg~~-~~---~~~~~~i~~l~~~q~~d------------   68 (244)
                      +.+.|+..++.+||.|..-   ...-+.+|.|-+++.+|.--|.. .+   ...+++.+||+..|..+            
T Consensus        74 ~~~~~~~~~~~edg~w~~~~~~~~~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~  153 (448)
T d1w6ka1          74 NGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQM  153 (448)
T ss_dssp             HHHHHHHTTBCTTSCBCCCCCCSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCC
T ss_pred             hhhhHhhccccCCCchhHhhcCCCCCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcCCCcchhhcCCC
Confidence            4556888899999998531   12237899999999999776632 11   23778899999998532            


Q ss_pred             --CCcCCC--CCCCCchhhHHHHHHHHHHhcC-----CCccC---HHHHHHHHHhccCCCCCccCCC-------------
Q 026025           69 --GGFAGN--IGHDPHVLYTLSAVQVLALFDK-----VDILD---ADKVSNYIVGLQNEDGSFSGDI-------------  123 (244)
Q Consensus        69 --Ggf~~~--~~~~~~~~~T~~al~~L~~l~~-----~~~~~---~~~~~~~l~~~q~~dGgf~~~~-------------  123 (244)
                        |||+..  ....|++..|..++.+|.++..     .+.++   +.++++||.++|+.||||..-.             
T Consensus       154 ~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~  233 (448)
T d1w6ka1         154 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNP  233 (448)
T ss_dssp             CTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCC
T ss_pred             CCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccc
Confidence              566543  2356888999999988876532     12222   5679999999999999997310             


Q ss_pred             -----CCCCC---hhhHHHHHHHHHhhccCC--------hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 026025          124 -----WGEVD---TRFSYIAICCLSILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL  187 (244)
Q Consensus       124 -----~~~~d---~~~ty~al~~l~~l~~~~--------~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL  187 (244)
                           .-..|   +..|..++.+|..++...        ...++++++||.+.|++||||....+ ..+.+.|++++.+|
T Consensus       234 ~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~wg-~~~~ygT~~al~aL  312 (448)
T d1w6ka1         234 SEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAF  312 (448)
T ss_dssp             CSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHH
T ss_pred             hhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCCCCCcccccCC-CcccHHHHHHHHHH
Confidence                 00122   334556666666554311        23578999999999999999977654 45778899999999


Q ss_pred             HHhCCCCC-----CCHHHHHHHHHcccccCccccCCC----------CCCCCccccchhhHhhhh
Q 026025          188 AIAGALHH-----VDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVGIFSQPNLMMEH  237 (244)
Q Consensus       188 ~~l~~~~~-----~~~~~~~~wL~~~Q~~~GGf~~~~----------~~~~d~~ys~~~l~~l~~  237 (244)
                      ..++....     ..++++++||+++|++||||+...          ...+++.-|=|+|.+|-.
T Consensus       313 ~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL~~  377 (448)
T d1w6ka1         313 ACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMA  377 (448)
T ss_dssp             HHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHH
T ss_pred             HHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcHHHHHHHHHHHHh
Confidence            99986321     237899999999999999996532          334455555588777744

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.59  E-value=1e-14  Score=121.66  Aligned_cols=204  Identities=12%  Similarity=0.028  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhcccCCC-------------Cc
Q 026025            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESG-------------GF   71 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~~dG-------------gf   71 (244)
                      +++.++||.+.|++||+|+....+++++..|..++.+|.++|... ....+++.+||++..-..+             -|
T Consensus        25 ~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i~~~GG~~~~~~~~k~~LA~~G~~  104 (271)
T d2sqca2          25 MEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEY  104 (271)
T ss_dssp             HHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCcccCchHHHHHHHhcCCC
Confidence            458889999999999999877777899999999999999999653 3357789999998843221             11


Q ss_pred             C--CCCCCC------------------CchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhh
Q 026025           72 A--GNIGHD------------------PHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF  131 (244)
Q Consensus        72 ~--~~~~~~------------------~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~  131 (244)
                      .  ..+..+                  .+...++..+..+.........+....+++|...|.+++.+........-...
T Consensus       105 ~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~eL~~~~~~~~~~~~~~~~~~~~~~  184 (271)
T d2sqca2         105 PWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGGWIFDA  184 (271)
T ss_dssp             CGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGGGCCSSCCCCCCCTTCCCHHHHH
T ss_pred             CccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHHHhcCCCccccccccccccHHHHH
Confidence            1  111100                  11122333333332222222233444577888888888888765432111122


Q ss_pred             HHHHHHHHHhhcc--CChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHc--
Q 026025          132 SYIAICCLSILQR--LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCE--  207 (244)
Q Consensus       132 ty~al~~l~~l~~--~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~--  207 (244)
                      +..++..+..+..  +....++++++||++.|++||||+..      ...|++++.+|..+|..+.+.+.+++++|.+  
T Consensus       185 ~~~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgwG~i------~p~~~~~l~aL~~~G~~~~p~v~r~l~~l~~~~  258 (271)
T d2sqca2         185 LDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGI------QPPWFYALIALKILDMTQHPAFIKGWEGLELYG  258 (271)
T ss_dssp             HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSSTTS------HHHHHHHHHHHHHTTCTTSHHHHHHHHGGGGGE
T ss_pred             HHHHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCcccc------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhe
Confidence            2233333333322  22456889999999999999999742      1247889999999997655668999999966  


Q ss_pred             ccccCccc
Q 026025          208 RQVKSGGL  215 (244)
Q Consensus       208 ~Q~~~GGf  215 (244)
                      -|.+|||+
T Consensus       259 ~~~~dG~~  266 (271)
T d2sqca2         259 VELDYGGW  266 (271)
T ss_dssp             EECTTSCE
T ss_pred             eEcCCCce
Confidence            46789886

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.44  E-value=3.8e-13  Score=111.95  Aligned_cols=184  Identities=18%  Similarity=0.145  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCC-CccCHHHHHHHHH
Q 026025           32 RLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIV  110 (244)
Q Consensus        32 ~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~  110 (244)
                      ++..+.-.+..+.++|..++...+++++||++.|++||||+..++..+++..|..++.+|.+++.. +.....++.+||.
T Consensus         3 ~~~~~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i~   82 (271)
T d2sqca2           3 NVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQ   82 (271)
T ss_dssp             CTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            344466778889999976656788999999999999999999999999999999999999998753 2333788999999


Q ss_pred             hccCCCCC---------------ccCCCC----------C-CCCh-------hhHHHHHHHHHhhccCChhhHHHHHHHH
Q 026025          111 GLQNEDGS---------------FSGDIW----------G-EVDT-------RFSYIAICCLSILQRLDKINVDKAVEYI  157 (244)
Q Consensus       111 ~~q~~dGg---------------f~~~~~----------~-~~d~-------~~ty~al~~l~~l~~~~~~~~e~~~~~i  157 (244)
                      +..-..+.               |.+.+.          . ..++       |.++..+..+....-..+......+++|
T Consensus        83 ~~GG~~~~~~~~k~~LA~~G~~~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~eL  162 (271)
T d2sqca2          83 SQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPEL  162 (271)
T ss_dssp             HTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGG
T ss_pred             HcCCcccCchHHHHHHHhcCCCCccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHHH
Confidence            98432211               111100          0 0111       2222222222111111122334467788


Q ss_pred             HhcCCCCCCCCCCCCCCcchhHHH-HHHHHHHHhCCCCC---CCHHHHHHHHHcccccCccccC
Q 026025          158 VSCKNLDGGFGCTPGGESHSGQIF-CCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLNG  217 (244)
Q Consensus       158 ~~~Q~~dGGf~~~p~~~~~~~~T~-~al~aL~~l~~~~~---~~~~~~~~wL~~~Q~~~GGf~~  217 (244)
                      ..-|.+++.|....+.. ....+. .++..+..+. ..+   ..++++++||+++|+++||+++
T Consensus       163 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~e~l~-~~~lr~~a~~~a~~wl~~~q~~dGgwG~  224 (271)
T d2sqca2         163 YETDVPPRRRGAKGGGG-WIFDALDRALHGYQKLS-VHPFRRAAEIRALDWLLERQAGDGSWGG  224 (271)
T ss_dssp             GCCSSCCCCCCCTTCCC-HHHHHHHHHHHHHHHSS-CCTTHHHHHHHHHHHHHHHCCTTSSSTT
T ss_pred             hcCCCcccccccccccc-HHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHHHccCCCCccc
Confidence            88888899886654332 222222 2222222222 112   2367899999999999999974

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.6e-09  Score=87.48  Aligned_cols=217  Identities=13%  Similarity=0.054  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCC------
Q 026025            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIG------   76 (244)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~------   76 (244)
                      ++++++=|.+.|++||+|.+|.+.+++++.|.+++.+|..+...   ++....+.+.|+++.|..+|+|.....      
T Consensus        54 i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~  133 (326)
T d1hzfa_          54 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM  133 (326)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccccccccCHHH
Confidence            34556667778999999999998888999999999999877542   334567788999999999999865432      


Q ss_pred             ------CCCchhhHHHHHHHHHHhcCCCc--c----------CHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHH
Q 026025           77 ------HDPHVLYTLSAVQVLALFDKVDI--L----------DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICC  138 (244)
Q Consensus        77 ------~~~~~~~T~~al~~L~~l~~~~~--~----------~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~  138 (244)
                            ....+..|.+++.+|...+....  .          .+.++++||.+....+-         .++....-+..+
T Consensus       134 ~~~~~~~~~~~~~tAyvl~aL~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~~~~~~~~---------~~~y~~a~~a~a  204 (326)
T d1hzfa_         134 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGL---------LGAHAAAITAYA  204 (326)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHcccccccchhhhhHhhHHHHHHHHHHHHHHHhhccc---------CCHHHHHHHHHH
Confidence                  12233445556666554432211  0          14567778866543210         111111112223


Q ss_pred             HHhhccCChhhHHHHHHHHHhcCC-CCCCCCCC--CC----------------------CCcchhHHHHHHHHHHHhCCC
Q 026025          139 LSILQRLDKINVDKAVEYIVSCKN-LDGGFGCT--PG----------------------GESHSGQIFCCVGALAIAGAL  193 (244)
Q Consensus       139 l~~l~~~~~~~~e~~~~~i~~~Q~-~dGGf~~~--p~----------------------~~~~~~~T~~al~aL~~l~~~  193 (244)
                      |.+.+. .......+..-+.+... .+++..+.  .+                      ...++..|.++|-++..... 
T Consensus       205 l~~~~~-~~~~~~~~~~~l~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iettayaLla~~~~~~-  282 (326)
T d1hzfa_         205 LTLTKA-PADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-  282 (326)
T ss_dssp             HHHTTC-CHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHcCC-chHHHHHHHHHHHHHHhhccccceecccccccccccccccccccCCCCCcccchHHHHHHHHHHHHHHhcCC-
Confidence            334443 22222223333333322 22221111  10                      11245678888766654432 


Q ss_pred             CCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026025          194 HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR  240 (244)
Q Consensus       194 ~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~  240 (244)
                      +....+..++||.+.|+.+|||..-       =-+.++|.+|..|..
T Consensus       283 ~~~~~~~~~~WL~~qr~~~Ggw~ST-------QdT~~al~AL~~y~~  322 (326)
T d1hzfa_         283 KAEMADQASAWLTRQGSFQGGFRST-------QDTVIALDALSAYWI  322 (326)
T ss_dssp             SSHHHHHHHHHHHHHTTSTTCSCSH-------HHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHhccCCCCCccH-------HHHHHHHHHHHHHHH
Confidence            3344688999999998999999522       125678888877754

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.91  E-value=7.8e-09  Score=89.25  Aligned_cols=160  Identities=16%  Similarity=0.063  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHhcccCCCCcCCCCC--------------------------------------CCCchhhHHHHHHHHHHh
Q 026025           53 DEEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALF   94 (244)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l   94 (244)
                      .-+++.+.|+..|+++|||.....                                      .+.+-..|..+|..|..+
T Consensus        82 eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~  161 (408)
T d1r76a_          82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV  161 (408)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHH
Confidence            467899999999999999965211                                      011223578888888766


Q ss_pred             cCC--Ccc------CHHHHHHHHHhccCCCCCccCCCC-CC--------CChhhHHHHHHHHHhhcc-------CC----
Q 026025           95 DKV--DIL------DADKVSNYIVGLQNEDGSFSGDIW-GE--------VDTRFSYIAICCLSILQR-------LD----  146 (244)
Q Consensus        95 ~~~--~~~------~~~~~~~~l~~~q~~dGgf~~~~~-~~--------~d~~~ty~al~~l~~l~~-------~~----  146 (244)
                      ...  +..      -+.++++||.+.|++||||..... ..        +|-. +--++-+|.....       ++    
T Consensus       162 ~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~-m~~~l~~l~~~~~~~~~~~~~~~~~r  240 (408)
T d1r76a_         162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDA-LVHVAELLSDIAAGRDGFGFVPPAIR  240 (408)
T ss_dssp             HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGH-HHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred             HHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchH-HHHHHHHHHHHHHhccccccCCHHHH
Confidence            321  111      257899999999999999975421 11        1211 1112333322211       11    


Q ss_pred             ---hhhHHHHHHHHHhcCCCCCCCCCCCCC---------------C-cchh--HHHHHHHHHHHhCCCCC-C----CHHH
Q 026025          147 ---KINVDKAVEYIVSCKNLDGGFGCTPGG---------------E-SHSG--QIFCCVGALAIAGALHH-V----DKDL  200 (244)
Q Consensus       147 ---~~~~e~~~~~i~~~Q~~dGGf~~~p~~---------------~-~~~~--~T~~al~aL~~l~~~~~-~----~~~~  200 (244)
                         ...++|+++||+++|.++|||-..-+.               | +...  .|..+|  +.||...++ .    .+++
T Consensus       241 ~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~--~~LM~~~~ps~~~~~aI~~  318 (408)
T d1r76a_         241 TRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARIL--LFLMEIEAPSDAVKQAIRG  318 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHH--HHHTTSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHH--HHHHhCCCCChhHHHHHHH
Confidence               125789999999999999996322110               1 2222  233333  333332221 1    3788


Q ss_pred             HHHHHHcccccCccc
Q 026025          201 LGWWLCERQVKSGGL  215 (244)
Q Consensus       201 ~~~wL~~~Q~~~GGf  215 (244)
                      ++.||.+.|..++++
T Consensus       319 av~Wl~~~~~~~~~~  333 (408)
T d1r76a_         319 GVAWLNTSVIRDRAW  333 (408)
T ss_dssp             HHHHHHHSCCCC---
T ss_pred             HHHHHHhcccCCcee
Confidence            999999999887776

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.3e-08  Score=80.39  Aligned_cols=179  Identities=18%  Similarity=0.151  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC----HHHHHHHHHhccCCCCCccCCCC-----
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD----ADKVSNYIVGLQNEDGSFSGDIW-----  124 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~----~~~~~~~l~~~q~~dGgf~~~~~-----  124 (244)
                      .+++++-|.++|++||||+.+++..++...|.+++.+|.........+    .+.+..++.+.|..+|.|.....     
T Consensus        56 i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~  135 (294)
T d1c3da_          56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE  135 (294)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccccchHhHHH
Confidence            456677889999999999999999999999999999998876543332    24455667778888887753210     


Q ss_pred             --------CCCChhhHHHHHHHHHhhccC-----Ch--hhHHHHHHHHHhc-----------------------------
Q 026025          125 --------GEVDTRFSYIAICCLSILQRL-----DK--INVDKAVEYIVSC-----------------------------  160 (244)
Q Consensus       125 --------~~~d~~~ty~al~~l~~l~~~-----~~--~~~e~~~~~i~~~-----------------------------  160 (244)
                              ...+...+..++-+|...+..     ..  ..+.++..|+...                             
T Consensus       136 ~~~~~~~~~~~~~~~~ay~~~~L~~~~~~~~~~~~~~~~~~~ka~~~l~~~~~~~~~~~~la~~~~~l~~~~~~~~~~~~  215 (294)
T d1c3da_         136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN  215 (294)
T ss_dssp             GGGGGGSCTTHHHHHHHHHHHHHHHTHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HhcccccccchHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHhHHHHHHHHH
Confidence                    011111222233333332211     10  1123333333211                             


Q ss_pred             ----CCCCCCCCCCCCC-CcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhh
Q 026025          161 ----KNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMM  235 (244)
Q Consensus       161 ----Q~~dGGf~~~p~~-~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l  235 (244)
                          ...++.+-..++. ..+...|.+++.++...+  +....++.++||.+.+..+|||..       +--+.++|.+|
T Consensus       216 ~~~~~~~~~~~w~~~~~~~~~ietta~alla~~~~~--~~~~~~~~~~wL~~qr~~~g~w~S-------Tq~T~~al~AL  286 (294)
T d1c3da_         216 KFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLK--DFDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQAL  286 (294)
T ss_dssp             HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTT--CTTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHH
T ss_pred             HHHHhcccCCCCCCCCCccchHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcccCCCCCcc-------HHHHHHHHHHH
Confidence                1135555444333 345566777776665543  345678899999998888889852       23366889998


Q ss_pred             hhhhhc
Q 026025          236 EHSCRS  241 (244)
Q Consensus       236 ~~~~~~  241 (244)
                      ..|-++
T Consensus       287 ~~ya~~  292 (294)
T d1c3da_         287 AQYQKD  292 (294)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888654

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=98.75  E-value=4.7e-09  Score=87.86  Aligned_cols=158  Identities=16%  Similarity=0.163  Sum_probs=88.1

Q ss_pred             HHHHHHHhcccCCCCcCCCCC-----C------C--CchhhHHHHHHHHHHhcCC--Cc---cCHHHHHHHHHhccCCCC
Q 026025           56 DVISWILKCQDESGGFAGNIG-----H------D--PHVLYTLSAVQVLALFDKV--DI---LDADKVSNYIVGLQNEDG  117 (244)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~-----~------~--~~~~~T~~al~~L~~l~~~--~~---~~~~~~~~~l~~~q~~dG  117 (244)
                      +..++|++.|+++|||+....     .      .  -+-..|..+|..|+.+...  +.   -.+.++++||.+.|++||
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG  106 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  106 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence            568899999999999973311     0      1  1334567777776655211  11   125789999999999999


Q ss_pred             CccCC-CCCC-CChhhHH---HHHHHHHhhcc------------CC-------hhhHHHHHHHHHhcCCCCCCCCCCCCC
Q 026025          118 SFSGD-IWGE-VDTRFSY---IAICCLSILQR------------LD-------KINVDKAVEYIVSCKNLDGGFGCTPGG  173 (244)
Q Consensus       118 gf~~~-~~~~-~d~~~ty---~al~~l~~l~~------------~~-------~~~~e~~~~~i~~~Q~~dGGf~~~p~~  173 (244)
                      ||... |... .....||   ..+.++.+|..            +.       ...++|+++||+++|.++|||-..-+.
T Consensus       107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg~  186 (324)
T d1gxma_         107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA  186 (324)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred             CccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhhh
Confidence            99753 2111 0011111   11222222211            11       124789999999999999986322110


Q ss_pred             ---------------C-cch--hHHHHHHHHHHHhCCCCCC----CHHHHHHHHHcccccCccc
Q 026025          174 ---------------E-SHS--GQIFCCVGALAIAGALHHV----DKDLLGWWLCERQVKSGGL  215 (244)
Q Consensus       174 ---------------~-~~~--~~T~~al~aL~~l~~~~~~----~~~~~~~wL~~~Q~~~GGf  215 (244)
                                     | +..  ..|...+  +.++...+..    .++++++|+.+.|....|+
T Consensus       187 Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv--~~LM~~~~s~~i~~ai~~avaWl~~~k~~~~~~  248 (324)
T d1gxma_         187 QHGALDYQPKKARAYELESLSGSESVGVL--AFLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGY  248 (324)
T ss_dssp             EECTTTCCBCCCSTTCCSSEETTTHHHHH--HHHTTSCCCHHHHHHHHHHHHHHTCTTTSEEEE
T ss_pred             ccCcccccccccccccChhhhhhhHHHHH--HHHhhcCCcHHHHHHHHHHHHHHHhchhcccce
Confidence                           1 111  1233333  3334332222    2678899999887554444

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.69  E-value=1.6e-07  Score=80.94  Aligned_cols=164  Identities=10%  Similarity=0.037  Sum_probs=91.9

Q ss_pred             HHHHHHHHHcccCCCCcccccc--------------------------------------ccchHHHHHHHHHHHHhhC-
Q 026025            7 DKHVKYIISVEKKKDSFESVVM--------------------------------------EHLRLNGAYWGLTTLDILG-   47 (244)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~--------------------------------------~~~~~~~~y~al~~l~llg-   47 (244)
                      .+..+.|+..|+++|||....+                                      ...|-..|.-.+..|+-+- 
T Consensus        84 ~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~~~  163 (408)
T d1r76a_          84 RHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVVS  163 (408)
T ss_dssp             HHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHHHH
Confidence            4567788889999999953110                                      1122233556666655442 


Q ss_pred             ---CCC----CcCHHHHHHHHHhcccCCCCcCCCCC----CCCch----hhHHHHHHHHHHh----cCCCcc--------
Q 026025           48 ---KLD----AVDEEDVISWILKCQDESGGFAGNIG----HDPHV----LYTLSAVQVLALF----DKVDIL--------  100 (244)
Q Consensus        48 ---~~~----~~~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~----~~T~~al~~L~~l----~~~~~~--------  100 (244)
                         ...    ....+++++||++.|++||||+.+..    +..|+    ..+.-++..|..+    +.+..+        
T Consensus       164 ~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r~r~  243 (408)
T d1r76a_         164 QLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRA  243 (408)
T ss_dssp             HSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHH
T ss_pred             HcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHHHHH
Confidence               111    11356899999999999999987632    11221    1223334433332    222212        


Q ss_pred             --CHHHHHHHHHhccCCCCCccCCCCCC----------------CChhhHHHHHHHHHhhcc--CCh---hhHHHHHHHH
Q 026025          101 --DADKVSNYIVGLQNEDGSFSGDIWGE----------------VDTRFSYIAICCLSILQR--LDK---INVDKAVEYI  157 (244)
Q Consensus       101 --~~~~~~~~l~~~q~~dGgf~~~~~~~----------------~d~~~ty~al~~l~~l~~--~~~---~~~e~~~~~i  157 (244)
                        -++++++||++.|.++||+.+.+...                +.+..+-++..++.++..  .++   ..++++++|+
T Consensus       244 ~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av~Wl  323 (408)
T d1r76a_         244 LEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWL  323 (408)
T ss_dssp             HHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChhHHHHHHHHHHHH
Confidence              14789999999999999976543211                122222333333333332  221   2588999999


Q ss_pred             HhcCCCCCCCCCC
Q 026025          158 VSCKNLDGGFGCT  170 (244)
Q Consensus       158 ~~~Q~~dGGf~~~  170 (244)
                      .++|.++|.|...
T Consensus       324 ~~~~~~~~~~~~~  336 (408)
T d1r76a_         324 NTSVIRDRAWVKS  336 (408)
T ss_dssp             HHSCCCC------
T ss_pred             HhcccCCceeeec
Confidence            9999999998654

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.5e-07  Score=74.99  Aligned_cols=74  Identities=19%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             HHHHHHhhcc-CChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-CCCCHHHHHHHHHcc
Q 026025          135 AICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCER  208 (244)
Q Consensus       135 al~~l~~l~~-~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-~~~~~~~~~~wL~~~  208 (244)
                      .+-++++.|. .+....+++++||.++|++||||+..+++.++...|..+..+|.++|.. +.....++.+||+++
T Consensus         9 ~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~   84 (279)
T d1w6ka2           9 LLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK   84 (279)
T ss_dssp             HHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence            4566778885 3445678899999999999999999999999999999999999999963 223478999999885

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.2e-06  Score=67.12  Aligned_cols=67  Identities=15%  Similarity=0.074  Sum_probs=48.6

Q ss_pred             HHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcC-HHHHHHHHHhcccCCCCcCC
Q 026025            7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVD-EEDVISWILKCQDESGGFAG   73 (244)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~-~~~~i~~l~~~q~~dGgf~~   73 (244)
                      +++++=|.+.|++||+|.+|++..++.+.|-+++..|.......   +.. .+....++.+.|..+|.|..
T Consensus        57 ~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e  127 (294)
T d1c3da_          57 KKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQE  127 (294)
T ss_dssp             HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred             HHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccc
Confidence            45556677789999999999888889999999999998876532   212 23344455667887777653

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=98.34  E-value=4.6e-07  Score=75.53  Aligned_cols=163  Identities=12%  Similarity=0.081  Sum_probs=89.6

Q ss_pred             HHHHHHHHcccCCCCccccc-------c------ccchHHHHHHHHHHHHhhCC---CC--CcCHHHHHHHHHhcccCCC
Q 026025            8 KHVKYIISVEKKKDSFESVV-------M------EHLRLNGAYWGLTTLDILGK---LD--AVDEEDVISWILKCQDESG   69 (244)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~-------~------~~~~~~~~y~al~~l~llg~---~~--~~~~~~~i~~l~~~q~~dG   69 (244)
                      +..+.+.+.|+++|||....       .      ...|-..|.-.+..|+.+..   ..  ....+++++||+++|++||
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG  106 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  106 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence            34577888899999995111       0      01133334444444443321   11  1346789999999999999


Q ss_pred             CcCCC-CC---CCCchh----hHHHHHHHHHHh--cC--C--Ccc----------CHHHHHHHHHhccCCCCCccCCCCC
Q 026025           70 GFAGN-IG---HDPHVL----YTLSAVQVLALF--DK--V--DIL----------DADKVSNYIVGLQNEDGSFSGDIWG  125 (244)
Q Consensus        70 gf~~~-~~---~~~~~~----~T~~al~~L~~l--~~--~--~~~----------~~~~~~~~l~~~q~~dGgf~~~~~~  125 (244)
                      ||+.+ |-   +..++.    .+.-++..|...  +.  +  ..+          .++++++||+++|.++|||.+.+..
T Consensus       107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg~  186 (324)
T d1gxma_         107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA  186 (324)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred             CccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhhh
Confidence            99886 21   122221    112222323211  11  1  111          1488999999999999997654321


Q ss_pred             ---C-------------CChhhHHHHHHHHHhhccCCh----hhHHHHHHHHHhcCCCCCCCCCC
Q 026025          126 ---E-------------VDTRFSYIAICCLSILQRLDK----INVDKAVEYIVSCKNLDGGFGCT  170 (244)
Q Consensus       126 ---~-------------~d~~~ty~al~~l~~l~~~~~----~~~e~~~~~i~~~Q~~dGGf~~~  170 (244)
                         +             +.+...=++..++.+......    ..++.+++|+.+.+..++|+...
T Consensus       187 Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~~LM~~~~s~~i~~ai~~avaWl~~~k~~~~~~~~~  251 (324)
T d1gxma_         187 QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGYTYD  251 (324)
T ss_dssp             EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTSEEEEEEC
T ss_pred             ccCcccccccccccccChhhhhhhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhchhcccceeec
Confidence               1             111111123333333332111    25788999999999888887543

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2e-06  Score=70.40  Aligned_cols=74  Identities=19%  Similarity=0.135  Sum_probs=61.8

Q ss_pred             HHHHHHhhCCC-CCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCC-CccCHHHHHHHHHhc
Q 026025           39 GLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGL  112 (244)
Q Consensus        39 al~~l~llg~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~  112 (244)
                      .+.++.++|.. +.+.++++++||.+.|++||||+..++..+++..|..|..+|.+++.. +.....++.+||.+.
T Consensus         9 ~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~   84 (279)
T d1w6ka2           9 LLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK   84 (279)
T ss_dssp             HHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence            35667888864 345688999999999999999999999999999999999999999752 333478899999986

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-05  Score=65.08  Aligned_cols=68  Identities=22%  Similarity=0.284  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCcc---CHHHHHHHHHhccCCCCCccC
Q 026025           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGSFSG  121 (244)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~~q~~dGgf~~  121 (244)
                      .+++++-|.++|++||||+.+++.+++...|.+++.+|..+.+...+   .+.+.+.|+.+.|..+|+|..
T Consensus        54 i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~  124 (326)
T d1hzfa_          54 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD  124 (326)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCC
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccc
Confidence            45677788999999999999999999999999999999887654322   357788999999999999864