Citrus Sinensis ID: 026027

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELIRRMN
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccHHHHHHHHHccccccEEEEEEcccHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHc
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccEEEEEEEEccccccccHHHHHHHHHHHHHHccEEEEEcHHHHHHHHHHcHHEHcccccHHHHHHHHHHccccEEccccEEcccHHHHHHHHccccEEEEHHHHHEHHcccccHHHHHccccccEcccccccccccccEEEEccccccHHHHHHHHHHHcc
maeveakapvpesvlKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKlkggfyvdpeAKLLFIIRIRginaidpkTKKILQLLRLRQIFNGVFLKVNKATMNMLhrvepyvtygypnlkSVRELIYKRgygkldkqrialTDNSIIEKALGKFGIICMEDLIHEIMtvgphfkeannflwpfklkaplgglkkkrnhyveggdagnreNYVNELIRRMN
maeveakapvpesvlkkqkrneEWALakkqeletskknklesrKLIYNRAKQYAKEFAEQEKVLIQLKREAklkggfyvdpEAKLLFIIRirginaidpKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRvepyvtygypnlKSVRELIYKRGygkldkqrialtdNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKrnhyveggdagnrenyvNELIRRMN
MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFklkaplgglkkkRNHYVEGGDAGNRENYVNELIRRMN
********************************************LIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKL***********************************
******K***PESVLKKQKRNEEWALA*******************YNRAKQYAKEFAEQEKVLIQL***************AKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELIRRMN
**********PESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELIRRMN
******KAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELIRRMN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRxxxxxxxxxxxxxxxxxxxxxAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELIRRMN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
Q9LHP1244 60S ribosomal protein L7- yes no 1.0 1.0 0.844 1e-120
P60040242 60S ribosomal protein L7- no no 0.987 0.995 0.854 1e-118
P60039242 60S ribosomal protein L7- no no 0.983 0.991 0.845 1e-117
P14148270 60S ribosomal protein L7 yes no 0.975 0.881 0.620 3e-82
P05426260 60S ribosomal protein L7 yes no 0.963 0.903 0.623 4e-82
Q4R506247 60S ribosomal protein L7 N/A no 0.995 0.983 0.606 1e-81
Q58DT1248 60S ribosomal protein L7 yes no 0.991 0.975 0.609 3e-81
Q5R9R4247 60S ribosomal protein L7 yes no 0.995 0.983 0.602 6e-81
P18124248 60S ribosomal protein L7 yes no 0.963 0.947 0.612 7e-81
Q5ZJ56246 60S ribosomal protein L7 yes no 0.987 0.979 0.610 1e-80
>sp|Q9LHP1|RL74_ARATH 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1 Back     alignment and function desciption
 Score =  429 bits (1104), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/244 (84%), Positives = 227/244 (93%)

Query: 1   MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQ 60
           M E E+K  VPESVLKK+KR EEWALAKKQELE +KK   E RKLI+NRAKQY+KE+ E+
Sbjct: 1   MTEAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEK 60

Query: 61  EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 120
           E+ LIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK
Sbjct: 61  ERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 120

Query: 121 VNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGI 180
           VNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKL+ QR ALTDNSI+++ LGK GI
Sbjct: 121 VNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGI 180

Query: 181 ICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELI 240
           IC+EDLIHEIMTVGPHFKEANNFLWPF+LKAPLGG+KKKRNHYVEGGDAGNREN++NEL+
Sbjct: 181 ICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELV 240

Query: 241 RRMN 244
           RRMN
Sbjct: 241 RRMN 244

Arabidopsis thaliana (taxid: 3702)
>sp|P60040|RL72_ARATH 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1 Back     alignment and function description
>sp|P60039|RL73_ARATH 60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1 Back     alignment and function description
>sp|P14148|RL7_MOUSE 60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2 Back     alignment and function description
>sp|P05426|RL7_RAT 60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2 Back     alignment and function description
>sp|Q4R506|RL7_MACFA 60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1 Back     alignment and function description
>sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1 Back     alignment and function description
>sp|Q5R9R4|RL7_PONAB 60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1 Back     alignment and function description
>sp|P18124|RL7_HUMAN 60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZJ56|RL7_CHICK 60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
294438964244 hypothetical protein UP-4 [Dimocarpus lo 1.0 1.0 0.893 1e-124
359483254246 PREDICTED: 60S ribosomal protein L7-4-li 1.0 0.991 0.882 1e-121
356526310243 PREDICTED: 60S ribosomal protein L7-4-li 0.983 0.987 0.887 1e-120
388518149243 unknown [Lotus japonicus] 0.983 0.987 0.883 1e-120
449447982243 PREDICTED: 60S ribosomal protein L7-4-li 0.983 0.987 0.866 1e-119
449453361309 PREDICTED: 60S ribosomal protein L7-4-li 0.983 0.776 0.862 1e-119
449453363243 PREDICTED: 60S ribosomal protein L7-4-li 0.983 0.987 0.862 1e-118
225445899245 PREDICTED: 60S ribosomal protein L7-4 [V 0.963 0.959 0.893 1e-118
297829898244 hypothetical protein ARALYDRAFT_478749 [ 1.0 1.0 0.848 1e-118
15231288244 60S ribosomal protein L7-4 [Arabidopsis 1.0 1.0 0.844 1e-118
>gi|294438964|gb|ACV83305.2| hypothetical protein UP-4 [Dimocarpus longan] Back     alignment and taxonomy information
 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/244 (89%), Positives = 234/244 (95%)

Query: 1   MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQ 60
           MA+VEAK  VPESVLKK+KR EEWA AKKQELE +KK +  +RKLIYNRAKQY+KE+ +Q
Sbjct: 1   MAQVEAKVVVPESVLKKRKREEEWAFAKKQELEAAKKKRSANRKLIYNRAKQYSKEYEQQ 60

Query: 61  EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 120
           EK LIQLKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKT+KILQLLRLRQIFNGVFLK
Sbjct: 61  EKELIQLKREAKLKGGFYVEPEAKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLK 120

Query: 121 VNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGI 180
           VNKAT+NMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIE+ALGK+GI
Sbjct: 121 VNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEQALGKYGI 180

Query: 181 ICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELI 240
           IC+EDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENY+NELI
Sbjct: 181 ICVEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELI 240

Query: 241 RRMN 244
           RRMN
Sbjct: 241 RRMN 244

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483254|ref|XP_003632932.1| PREDICTED: 60S ribosomal protein L7-4-like [Vitis vinifera] gi|297735811|emb|CBI18498.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356526310|ref|XP_003531761.1| PREDICTED: 60S ribosomal protein L7-4-like [Glycine max] Back     alignment and taxonomy information
>gi|388518149|gb|AFK47136.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449447982|ref|XP_004141745.1| PREDICTED: 60S ribosomal protein L7-4-like [Cucumis sativus] gi|449491808|ref|XP_004159009.1| PREDICTED: 60S ribosomal protein L7-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449453361|ref|XP_004144426.1| PREDICTED: 60S ribosomal protein L7-4-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449453363|ref|XP_004144427.1| PREDICTED: 60S ribosomal protein L7-4-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225445899|ref|XP_002262697.1| PREDICTED: 60S ribosomal protein L7-4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297829898|ref|XP_002882831.1| hypothetical protein ARALYDRAFT_478749 [Arabidopsis lyrata subsp. lyrata] gi|297328671|gb|EFH59090.1| hypothetical protein ARALYDRAFT_478749 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15231288|ref|NP_187967.1| 60S ribosomal protein L7-4 [Arabidopsis thaliana] gi|42572417|ref|NP_974304.1| 60S ribosomal protein L7-4 [Arabidopsis thaliana] gi|42572419|ref|NP_974305.1| 60S ribosomal protein L7-4 [Arabidopsis thaliana] gi|38503370|sp|Q9LHP1.1|RL74_ARATH RecName: Full=60S ribosomal protein L7-4 gi|11994560|dbj|BAB02600.1| 60S ribosomal protein L7 [Arabidopsis thaliana] gi|14532552|gb|AAK64004.1| AT3g13580/K20M4_2 [Arabidopsis thaliana] gi|15810196|gb|AAL06999.1| AT3g13580/K20M4_2 [Arabidopsis thaliana] gi|18655395|gb|AAL76153.1| AT3g13580/K20M4_2 [Arabidopsis thaliana] gi|332641855|gb|AEE75376.1| 60S ribosomal protein L7-4 [Arabidopsis thaliana] gi|332641856|gb|AEE75377.1| 60S ribosomal protein L7-4 [Arabidopsis thaliana] gi|332641857|gb|AEE75378.1| 60S ribosomal protein L7-4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:2086809244 AT3G13580 [Arabidopsis thalian 1.0 1.0 0.803 1.4e-103
TAIR|locus:2038741242 AT2G01250 [Arabidopsis thalian 0.987 0.995 0.809 3.3e-102
TAIR|locus:2051874247 AT2G44120 [Arabidopsis thalian 0.983 0.971 0.8 7.9e-101
MGI|MGI:98073270 Rpl7 "ribosomal protein L7" [M 0.971 0.877 0.597 3.2e-72
RGD|735169260 Rpl7 "ribosomal protein L7" [R 0.959 0.9 0.600 5.3e-72
UNIPROTKB|P05426260 Rpl7 "60S ribosomal protein L7 0.959 0.9 0.600 5.3e-72
UNIPROTKB|Q58DT1248 RPL7 "60S ribosomal protein L7 0.991 0.975 0.576 8.6e-72
UNIPROTKB|F1Q0Z2248 RPL7 "Uncharacterized protein" 0.987 0.971 0.581 1.4e-71
UNIPROTKB|P18124248 RPL7 "60S ribosomal protein L7 0.987 0.971 0.577 3.7e-71
ZFIN|ZDB-GENE-030131-8654246 rpl7 "ribosomal protein L7" [D 0.991 0.983 0.572 6.1e-71
TAIR|locus:2086809 AT3G13580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 196/244 (80%), Positives = 215/244 (88%)

Query:     1 MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQ 60
             M E E+K  VPESVLKK+KR EEWALAKKQELE +KK   E RKLI+NRAKQY+KE+ E+
Sbjct:     1 MTEAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEK 60

Query:    61 EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 120
             E+ LIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK
Sbjct:    61 ERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 120

Query:   121 VNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGI 180
             VNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKL+ QR ALTDNSI+++ LGK GI
Sbjct:   121 VNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGI 180

Query:   181 ICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNRENYVNELI 240
             IC+EDLIHEIMTVGPHFKEANNFLWPF            RNHYVEGGDAGNREN++NEL+
Sbjct:   181 ICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELV 240

Query:   241 RRMN 244
             RRMN
Sbjct:   241 RRMN 244
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
TAIR|locus:2038741 AT2G01250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051874 AT2G44120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:98073 Rpl7 "ribosomal protein L7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|735169 Rpl7 "ribosomal protein L7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P05426 Rpl7 "60S ribosomal protein L7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DT1 RPL7 "60S ribosomal protein L7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0Z2 RPL7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P18124 RPL7 "60S ribosomal protein L7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8654 rpl7 "ribosomal protein L7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R506RL7_MACFANo assigned EC number0.60650.99590.9838N/Ano
Q9LHP1RL74_ARATHNo assigned EC number0.84421.01.0yesno
P05737RL7A_YEASTNo assigned EC number0.51470.96310.9631yesno
Q5R9R4RL7_PONABNo assigned EC number0.60240.99590.9838yesno
Q6C603RL7_YARLINo assigned EC number0.57800.96310.94yesno
P05426RL7_RATNo assigned EC number0.62390.96310.9038yesno
P60039RL73_ARATHNo assigned EC number0.84580.98360.9917nono
Q6FSN6RL7_CANGANo assigned EC number0.52080.94260.9426yesno
O60143RL7C_SCHPONo assigned EC number0.56830.95490.9282yesno
Q12213RL7B_YEASTNo assigned EC number0.51470.96310.9631yesno
P11874RL7_DICDINo assigned EC number0.55370.95080.9430yesno
P60040RL72_ARATHNo assigned EC number0.85470.98770.9958nono
Q58DT1RL7_BOVINNo assigned EC number0.60900.99180.9758yesno
P0DJ13RL7_TETTHNo assigned EC number0.52990.95900.9790N/Ano
Q755A7RL7_ASHGONo assigned EC number0.54850.96310.9670yesno
P18124RL7_HUMANNo assigned EC number0.61270.96310.9475yesno
P32100RL7_DROMENo assigned EC number0.55080.95490.9246yesno
P14148RL7_MOUSENo assigned EC number0.62040.97540.8814yesno
Q7SBD5RL7_NEUCRNo assigned EC number0.61010.96310.9475N/Ano
Q5ZJ56RL7_CHICKNo assigned EC number0.61040.98770.9796yesno
Q6BTA4RL7_DEBHANo assigned EC number0.52760.95900.9709yesno
O01802RL7_CAEELNo assigned EC number0.54500.99180.9918yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.3__1450__AT3G13580.2
annotation not avaliable (244 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
scaffold_702723.1
annotation not avaliable (204 aa)
  ••• • 0.686
fgenesh2_kg.7__2638__AT4G16720.1
annotation not avaliable (204 aa)
  ••• • 0.685
scaffold_602125.1
annotation not avaliable (220 aa)
  ••••  0.682
scaffold_402182.1
annotation not avaliable (204 aa)
  ••• • 0.682
fgenesh2_kg.8__1848__AT5G59240.1
annotation not avaliable (210 aa)
  ••••  0.677
fgenesh2_kg.2__971__AT1G67430.1
annotation not avaliable (175 aa)
•  •••  0.660
fgenesh2_kg.1__2897__AT1G27400.1
annotation not avaliable (176 aa)
•  •••  0.658
scaffold_603399.1
annotation not avaliable (194 aa)
•  •••  0.634
fgenesh2_kg.1__3446__AT1G33140.1
annotation not avaliable (194 aa)
•  •••  0.625
fgenesh2_kg.7__621__AT4G34670.1
annotation not avaliable (262 aa)
   •••• 0.622

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
TIGR01310235 TIGR01310, L7, 60S ribosomal protein L7, eukaryoti 1e-104
cd01657159 cd01657, Ribosomal_L7_archeal_euk, Ribosomal prote 9e-87
PRK06049154 PRK06049, rpl30p, 50S ribosomal protein L30P; Revi 6e-21
TIGR01309152 TIGR01309, L30P_arch, 50S ribosomal protein L30P, 2e-18
pfam0807971 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin 6e-18
cd0035553 cd00355, Ribosomal_L30_like, Ribosomal protein L30 4e-17
pfam0032752 pfam00327, Ribosomal_L30, Ribosomal protein L30p/L 7e-16
COG184155 COG1841, RpmD, Ribosomal protein L30/L7E [Translat 3e-13
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic Back     alignment and domain information 
 Score =  301 bits (774), Expect = e-104
 Identities = 139/235 (59%), Positives = 184/235 (78%), Gaps = 2/235 (0%)

Query: 12  ESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREA 71
           E +LKK+K  +E A+   ++ +  KK   + RK+ + RA+ + KE+ + E+ +I+LKR A
Sbjct: 1   ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLA 60

Query: 72  KLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHR 131
           K  G FYV  E KL+F+IRI+GIN I PK +K+L+LLRL+Q+ NGVF+KV KAT+ ML  
Sbjct: 61  KKPGKFYVPAEHKLVFVIRIKGINGIPPKPRKVLRLLRLKQVNNGVFVKVTKATLEMLRI 120

Query: 132 VEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIM 191
           VEPYV YGYPNLKSVRELIYKRG+ K++ QR+ LTDN+IIE+ LGK+GIIC+EDLIHEI 
Sbjct: 121 VEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNTIIEQHLGKYGIICIEDLIHEIY 180

Query: 192 TVGPHFKEANNFLWPFKLKAPLGG--LKKKRNHYVEGGDAGNRENYVNELIRRMN 244
           TVGPHFKE NNFLWPFKL +P+ G   +KK  H++EGGD GNRE+++NELI++MN
Sbjct: 181 TVGPHFKEVNNFLWPFKLSSPVKGWGKRKKVKHFIEGGDFGNREDFINELIKKMN 235

This model describes the eukaryotic 60S (cytosolic) ribosomal protein L7 and paralogs that may or may not also be L7. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues). Length = 235
>gnl|CDD|100099 cd01657, Ribosomal_L7_archeal_euk, Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome Back     alignment and domain information
>gnl|CDD|235683 PRK06049, rpl30p, 50S ribosomal protein L30P; Reviewed Back     alignment and domain information
>gnl|CDD|130376 TIGR01309, L30P_arch, 50S ribosomal protein L30P, archaeal Back     alignment and domain information
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain Back     alignment and domain information
>gnl|CDD|100098 cd00355, Ribosomal_L30_like, Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa Back     alignment and domain information
>gnl|CDD|201157 pfam00327, Ribosomal_L30, Ribosomal protein L30p/L7e Back     alignment and domain information
>gnl|CDD|224754 COG1841, RpmD, Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
TIGR01310235 L7 60S ribosomal protein L7, eukaryotic. Members o 100.0
KOG3184235 consensus 60S ribosomal protein L7 [Translation, r 100.0
cd01657159 Ribosomal_L7_archeal_euk Ribosomal protein L7, whi 100.0
PRK06049154 rpl30p 50S ribosomal protein L30P; Reviewed 100.0
TIGR01309152 L30P_arch 50S ribosomal protein L30P, archaeal. Th 100.0
COG184155 RpmD Ribosomal protein L30/L7E [Translation, ribos 99.8
cd0035553 Ribosomal_L30_like Ribosomal protein L30, which is 99.75
PF0807971 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; 99.72
PRK0561159 rpmD 50S ribosomal protein L30; Reviewed 99.7
PF0032752 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPr 99.7
TIGR0130855 rpmD_bact ribosomal protein L30, bacterial/organel 99.65
cd0165854 Ribosomal_L30 Ribosomal protein L30, which is foun 99.62
KOG4799182 consensus Mitochondrial ribosomal protein L30 [Tra 97.3
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic Back     alignment and domain information 
Probab=100.00  E-value=1.3e-84  Score=573.94  Aligned_cols=233  Identities=60%  Similarity=1.020  Sum_probs=228.7

Q ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeeEEEEEe
Q 026027           12 ESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRI   91 (244)
Q Consensus        12 E~~LKKrk~~~~~~~~~~~~~~~~k~~~~~~rk~~~krae~~vkeyr~~e~d~~r~kr~ak~~~~~~~~~e~kl~~Viri   91 (244)
                      |++|||||++++++.++++++.+.++.++++++.+|+|||+|+++|+++|+|.+|++|+++++|++|+|++|+++|||||
T Consensus         1 e~llkkrk~~~~~~~~~~~~~~~~k~~~~~~k~~~fkr~e~~~~~y~~~e~d~~r~~r~~k~~~~~~~~~e~kl~fVIRi   80 (235)
T TIGR01310         1 ELLLKKRKARQELAVVRAKQAKAKKKRNKKKKKHYFKRAESFVHEYRKAERERIRLKRLAKKPGKFYVPAEHKLLFVIRI   80 (235)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCeEEEEEEe
Confidence            78999999999999999999888888888999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCCccccCCChhHH
Q 026027           92 RGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSII  171 (244)
Q Consensus        92 rg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn~li  171 (244)
                      ||++++||++++||++|||+++|+|||+++||++.+||++|+|||||||||++||++||||||+++++|+++|||||+||
T Consensus        81 rG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~VepYVt~G~p~l~tvr~Li~KRG~~k~~~~~v~Ltdn~ii  160 (235)
T TIGR01310        81 KGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNTII  160 (235)
T ss_pred             CCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHhcCCeEEEecCCHHHHHHHHHHhCceeeCCCeeeCChhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccc--cccccccccCCCCCChhHHHHHHHhhC
Q 026027          172 EKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLK--KKRNHYVEGGDAGNRENYVNELIRRMN  244 (244)
Q Consensus       172 ee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~--~~~~~~~~gG~~G~rg~~In~Li~rM~  244 (244)
                      |++||++||+|+|||||||+|+|+||+++++|||||+||||++||+  +++++|.+||++||||+.||+||++|+
T Consensus       161 E~~lg~~gi~ciEDliheI~t~g~~fk~i~~~L~PFrL~~Pr~G~~~~~~~~~~~egG~~G~r~~~IN~Li~rM~  235 (235)
T TIGR01310       161 EQHLGKYGIICIEDLIHEIYTVGPHFKEVNNFLWPFKLSSPVKGFGKRKKVKHFKEGGDFGNREDAINELIRKMN  235 (235)
T ss_pred             HHhhccCCcccHHHHHHHHHhCCCCHHHHhcCccCccCCCCcccccccCcccCcccCCCCCccHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999997  488999999999999999999999997

Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
>KOG3184 consensus 60S ribosomal protein L7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01657 Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome Back     alignment and domain information
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed Back     alignment and domain information
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal Back     alignment and domain information
>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa Back     alignment and domain information
>PF08079 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; InterPro: IPR012988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed Back     alignment and domain information
>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle Back     alignment and domain information
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa Back     alignment and domain information
>KOG4799 consensus Mitochondrial ribosomal protein L30 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3izr_e244 Localization Of The Large Subunit Ribosomal Protein 2e-98
2zkr_w270 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-77
4a17_V239 T.Thermophila 60s Ribosomal Subunit In Complex With 1e-67
3izs_e244 Localization Of The Large Subunit Ribosomal Protein 5e-65
1s1i_F162 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-52
3jyw_F213 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-52
3zf7_w257 High-resolution Cryo-electron Microscopy Structure 5e-51
3j21_Y155 Promiscuous Behavior Of Proteins In Archaeal Riboso 5e-06
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 244 Back     alignment and structure 
Iteration: 1

 Score =  355 bits (910), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/244 (70%), Positives = 198/244 (81%)
Query: 1   MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQ 60
           MA   AK  VPE V+ K++R E WA  KKQ++   K    E+ K+IY RA+QYA E+  Q
Sbjct: 1   MASEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQ 60
Query: 61  EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 120
           +K L+QLKREA++KGGFYV PEAK LF++RIRGINA+ PKTKKILQLLRLRQIFNGVFLK
Sbjct: 61  DKELVQLKREARMKGGFYVSPEAKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLK 120
Query: 121 VNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGI 180
           VNKAT+NML RVEPYVTYGYPNLKSVRELIYKRGYGKL+KQRI L +N +IE+ LGK  I
Sbjct: 121 VNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEEGLGKHNI 180
Query: 181 ICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNRENYVNELI 240
           IC+EDL+HEI+TVGPHFKEANNFLWPF            RNHYVEGGDAGNRENY+N+L+
Sbjct: 181 ICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLV 240
Query: 241 RRMN 244
           RRMN
Sbjct: 241 RRMN 244
>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 270 Back     alignment and structure
>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 239 Back     alignment and structure
>pdb|3IZS|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 244 Back     alignment and structure
>pdb|1S1I|F Chain F, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 162 Back     alignment and structure
>pdb|3JYW|F Chain F, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 213 Back     alignment and structure
>pdb|3ZF7|WW Chain w, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 257 Back     alignment and structure
>pdb|3J21|Y Chain Y, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3iz5_e244 60S ribosomal protein L7 (L30P); eukaryotic riboso 7e-79
3izc_e244 60S ribosomal protein RPL7 (L30P); eukaryotic ribo 7e-78
4a17_V239 RPL7, 60S ribosomal protein L7; eukaryotic ribosom 2e-77
2zkr_w270 60S ribosomal protein L7; protein-RNA complex, 60S 3e-74
3jyw_F213 60S ribosomal protein L7(A); eukaryotic ribosome, 4e-73
1vq8_W154 50S ribosomal protein L30P; ribosome 50S, protein- 7e-58
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V Length = 239 Back     alignment and structure
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 270 Back     alignment and structure
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F Length = 213 Back     alignment and structure
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ... Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
4a17_V239 RPL7, 60S ribosomal protein L7; eukaryotic ribosom 100.0
3iz5_e244 60S ribosomal protein L7 (L30P); eukaryotic riboso 100.0
3izc_e244 60S ribosomal protein RPL7 (L30P); eukaryotic ribo 100.0
2zkr_w270 60S ribosomal protein L7; protein-RNA complex, 60S 100.0
1vq8_W154 50S ribosomal protein L30P; ribosome 50S, protein- 100.0
3j21_Y155 50S ribosomal protein L30P; archaea, archaeal, KIN 100.0
3jyw_F213 60S ribosomal protein L7(A); eukaryotic ribosome, 100.0
1bxy_A60 Protein (ribosomal protein L30); X-RAY crystallogr 99.73
3r8s_Z58 50S ribosomal protein L30; protein biosynthesis, R 99.68
2zjr_W55 50S ribosomal protein L30; ribosome, large ribosom 99.68
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V Back     alignment and structure
Probab=100.00  E-value=2.6e-88  Score=598.09  Aligned_cols=236  Identities=53%  Similarity=0.937  Sum_probs=231.8

Q ss_pred             CCchHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeeEEE
Q 026027            9 PVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFI   88 (244)
Q Consensus         9 ~vpE~~LKKrk~~~~~~~~~~~~~~~~k~~~~~~rk~~~krae~~vkeyr~~e~d~~r~kr~ak~~~~~~~~~e~kl~~V   88 (244)
                      +|||++|||||+++++++.+++++.+.++.++++++.+|+|||+|++||+++++|.+|++|+|+++|+||+|+||+++||
T Consensus         4 ~vpe~~lKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~~r~a~~~~~~~~~~e~kl~fV   83 (239)
T 4a17_V            4 FVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAKVAFA   83 (239)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCCEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceEEEE
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCCccccCCCh
Q 026027           89 IRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDN  168 (244)
Q Consensus        89 irirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn  168 (244)
                      |||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++++++++|||||
T Consensus        84 irIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~Ltdn  163 (239)
T 4a17_V           84 IRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDN  163 (239)
T ss_dssp             EECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTEEEECCCS
T ss_pred             EEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCceecCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccccccccccccCCCCCChhHHHHHHHhhC
Q 026027          169 SIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYVNELIRRMN  244 (244)
Q Consensus       169 ~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~~~~~~~gG~~G~rg~~In~Li~rM~  244 (244)
                      ++||++||++||+|+|||||||+++|++|+++++|||||+||||+|||++++.+|.+||++||||+.||+||++|+
T Consensus       164 ~~ie~~lGk~giiciEDLiheI~t~g~~fk~~~~fl~pFkL~~PrgG~k~~~~~f~egG~~G~r~~~IN~Li~rM~  239 (239)
T 4a17_V          164 TIVEKSLGKFGITCVEDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML  239 (239)
T ss_dssp             HHHHHHHGGGTCCSHHHHHHHHHHTCSCCHHHHHHBCCEECCCCSSCCSCTTSBGGGTCCBEECTTTHHHHHHHHC
T ss_pred             HHHHHhCCcCCcccHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccCCCccccHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999888999999999999999999999997
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ... Back     alignment and structure
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F Back     alignment and structure
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ... Back     alignment and structure
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ... Back     alignment and structure
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d1vqow1154 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon H 6e-57
d2gycx156 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L3 9e-04
d1bxya_60 d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {T 0.002
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 154 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  176 bits (448), Expect = 6e-57
 Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 85  LLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLK 144
           +  ++++RG   +    +  L++L +  + +   +    A   M+ +V  +V +G P+ +
Sbjct: 1   MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQE 60

Query: 145 SVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFL 204
           ++  ++  R      +    + D    E          +  L   +++            
Sbjct: 61  TLETVLATRAEPL--EGDADVDD----EWVAEHTDYDDISGLAFALLS-EETTLREQGLS 113

Query: 205 WPFKLKAPLGGLKKKRNHYVEGGDAGN-RENYVNELIRRM 243
              +L  P GG    ++   EGG  G      +++L+  M
Sbjct: 114 PTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]} Length = 56 Back     information, alignment and structure
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d1vqow1154 Archaeal L30 (L30a) {Archaeon Haloarcula marismort 100.0
d2gycx156 Prokaryotic ribosomal protein L30 {Escherichia col 99.64
d1bxya_60 Prokaryotic ribosomal protein L30 {Thermus thermop 99.64
d2zjrw155 Prokaryotic ribosomal protein L30 {Deinococcus rad 99.53
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5.8e-59  Score=385.72  Aligned_cols=153  Identities=16%  Similarity=0.319  Sum_probs=144.5

Q ss_pred             eEEEEEecCcCCCCHHHHHHHHHhCCCCcccEEEEecCHhhHHHHhhccCceEEecCCHHHHHHHHHhhcccccCCcccc
Q 026027           85 LLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIA  164 (244)
Q Consensus        85 l~~Virirg~~~~~~~~~k~L~~LrL~ki~~~vfv~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~  164 (244)
                      +++||||||.+++||++++||++|||+++|+|||+++||+++|||++|+|||||||||++||++||||||+++.++.  |
T Consensus         1 m~aViRIRg~ig~~~~~r~tL~~LrL~k~~~~V~~~~tp~~~gML~kVk~yVt~G~~~~~tv~~Li~kRG~~~~g~~--~   78 (154)
T d1vqow1           1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDA--D   78 (154)
T ss_dssp             CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSTTSEEEECCCHHHHHHHHHHHCCBSSSCC--C
T ss_pred             CeeEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHhhccceeEecCCHHHHHHHHHHhcccccCCC--c
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999888775  8


Q ss_pred             CCChhHHHhhcccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCccccccccccccccCCCC-CChhHHHHHHHhh
Q 026027          165 LTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAG-NRENYVNELIRRM  243 (244)
Q Consensus       165 ltdn~liee~lg~~gi~ciEdlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~~~~~~~gG~~G-~rg~~In~Li~rM  243 (244)
                      ||||+++|    ++||+|+|||||+|++ |++|.++++|+|||+||||++||++++++|.+||++| ||||+||+||+||
T Consensus        79 lt~e~i~~----~~g~~~iedl~~~i~~-g~~~~~~~~~~~pFrL~pP~~g~~~~k~~~~~gG~~Gnyrge~IN~Li~rM  153 (154)
T d1vqow1          79 VDDEWVAE----HTDYDDISGLAFALLS-EETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM  153 (154)
T ss_dssp             CCHHHHHH----HSSSSSHHHHHHHHHT-TSCCTTTTTBCSEEECCCCTTCCSCSSSBGGGTSSBEECCHHHHHHHHHHT
T ss_pred             CCHhHhcc----ccCcccHHHHHHHHHc-CCceeeccCCcCCeeCCCcccchhhcccccccCCccCCccHHHHHHHHHHc
Confidence            99998866    4579999999999998 6677778999999999999999999999999999999 6999999999999


Q ss_pred             C
Q 026027          244 N  244 (244)
Q Consensus       244 ~  244 (244)
                      .
T Consensus       154 ~  154 (154)
T d1vqow1         154 R  154 (154)
T ss_dssp             C
T ss_pred             C
Confidence            4
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure