Citrus Sinensis ID: 026031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEAGEEESDGDDEENGENGDGDEDGN
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHccccEEEcccccccEEEEEEEccccccccccEEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHcccHHHHHHHcHHHHHHHHHHHccEEEEcccccccEEEEEEEcccccccccEEEEEEEEcccccEEEEcccEEEcccccccccccccccccccccccccHcccccccccHHHHcccHHHHHHHHHHccccccHEEcccccccHccccccccccccccccccc
Coil and Loop (DISEMBL)
mvadrgkkskvaedenadgidTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNsldvedfkdvksgYCITFIfnenphfentklsktftfldegttkITGTVIKwkegmgstnginhekngnkrplaeesfFSWFAETEQKDFVELQDEVAEIIKedlwpnplkyfnneageeesdgddeengengdgdedgn
Flexible Loop (DISEMBL)
mvadrgkkskvaedenadgidteLVLSIEKLQEVQDELEKvneeasdkvleieqkyneirrpvynkrNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFnenphfentklsktftfldegttkitgtvikwkegmgstnginhekngnkRPLAEESFFSWFAETEQKDFVELQDEVAEiikedlwpnpLKYFNNEAgeeesdgddeengengdgdedgn
Low Complexity Region (SEG)
MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFnneageeesdgddeengengdgdedgn
Disordered region (IsUnstruct)
************************VL**********************VLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGM*******************ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF***************************
Disordered Region (DISOPRED)
***************************IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMG******************ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFN**************************
Disordered Region (DISEMBL)
***************NADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEA***********************
Disordered Region (DISPRO)
******************GIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGS****************EESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEA***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVADRGKKSKVAEDENADGIDTExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFxxxxxxxxxxxxxxxxxxxxxDLWPNPLKYFNNEAGEEESDGDDEENGENGDGDEDGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q01105	290	Protein SET OS=Homo sapie	yes	no	0.766	0.644	0.438	3e-43
Q63945	289	Protein SET OS=Rattus nor	yes	no	0.766	0.647	0.438	4e-43
Q9EQU5	289	Protein SET OS=Mus muscul	yes	no	0.766	0.647	0.438	5e-43
P53997	269	Protein SET OS=Drosophila	yes	no	0.868	0.788	0.396	2e-42
Q9UJ04	414	Testis-specific Y-encoded	no	no	0.75	0.442	0.356	4e-33
Q9H2G4	693	Testis-specific Y-encoded	no	no	0.758	0.266	0.364	4e-33
Q9BE64	695	Testis-specific Y-encoded	N/A	no	0.758	0.266	0.364	9e-33
Q7TQI8	677	Testis-specific Y-encoded	no	no	0.766	0.276	0.343	2e-32
Q69ZB3	406	Testis-specific Y-encoded	no	no	0.877	0.527	0.344	1e-31
Q8VD63	406	Testis-specific Y-encoded	no	no	0.75	0.450	0.350	2e-31

>sp|Q01105|SET_HUMAN Protein SET OS=Homo sapiens GN=SET PE=1 SV=3

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 130/194 (67%), Gaps = 7/194 (3%)

Query: 27  SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHP 86
           +IE + EVQ+E++++NE+AS+++L++EQKYN++R+P + KR+E+I  IP+FW+  F++HP
Sbjct: 44  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 103

Query: 87  VLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT 146
            +  LL EED++   Y+  ++V +F+D+KSGY I F F+ENP+FEN  LSK F   + G 
Sbjct: 104 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGD 163

Query: 147 TKITGTVIKWKEGMGSTNGINHEKNGNKRPLAE---ESFFSWFAETEQKDFVELQDEVAE 203
                T IKWK G   T   +  +N   R       ESFF+WF  T+  D     DE+ E
Sbjct: 164 PSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF--TDHSD--AGADELGE 219

Query: 204 IIKEDLWPNPLKYF 217
           +IK+D+WPNPL+Y+
Sbjct: 220 VIKDDIWPNPLQYY 233

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.
Homo sapiens (taxid: 9606)

>sp|Q63945|SET_RAT Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 130/194 (67%), Gaps = 7/194 (3%)

Query: 27  SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHP 86
           +IE + EVQ+E++++NE+AS+++L++EQKYN++R+P + KR+E+I  IP+FW+  F++HP
Sbjct: 43  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 102

Query: 87  VLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT 146
            +  LL EED++   Y+  ++V +F+D+KSGY I F F+ENP+FEN  LSK F   + G 
Sbjct: 103 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGD 162

Query: 147 TKITGTVIKWKEGMGSTNGINHEKNGNKRPLAE---ESFFSWFAETEQKDFVELQDEVAE 203
                T IKWK G   T   +  +N   R       ESFF+WF  T+  D     DE+ E
Sbjct: 163 PSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF--TDHSD--AGADELGE 218

Query: 204 IIKEDLWPNPLKYF 217
           +IK+D+WPNPL+Y+
Sbjct: 219 VIKDDIWPNPLQYY 232

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Rattus norvegicus (taxid: 10116)

>sp|Q9EQU5|SET_MOUSE Protein SET OS=Mus musculus GN=Set PE=1 SV=1

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 130/194 (67%), Gaps = 7/194 (3%)

Query: 27  SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHP 86
           +IE + EVQ+E++++NE+AS+++L++EQKYN++R+P + KR+E+I  IP+FW+  F++HP
Sbjct: 43  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 102

Query: 87  VLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT 146
            +  LL EED++   Y+  ++V +F+D+KSGY I F F+ENP+FEN  LSK F   + G 
Sbjct: 103 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGD 162

Query: 147 TKITGTVIKWKEGMGSTNGINHEKNGNKRPLAE---ESFFSWFAETEQKDFVELQDEVAE 203
                T IKWK G   T   +  +N   R       ESFF+WF  T+  D     DE+ E
Sbjct: 163 PSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF--TDHSD--AGADELGE 218

Query: 204 IIKEDLWPNPLKYF 217
           +IK+D+WPNPL+Y+
Sbjct: 219 VIKDDIWPNPLQYY 232

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Mus musculus (taxid: 10090)

>sp|P53997|SET_DROME Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 144/227 (63%), Gaps = 15/227 (6%)

Query: 2   VADRGKKSKVAEDEN---ADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNE 58
           V  R K      D N   A G + E   ++E++   Q+E++ +NE+AS+++L++EQKYN+
Sbjct: 4   VPKRAKLDGAPADGNTSAAAGNNEEESEALEQIDACQNEIDALNEKASEEILKVEQKYNK 63

Query: 59  IRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGY 118
           +R+P Y KR+E++K IP+FW+ +F++HP +  +L+EE+++    +N L+VE+F+D+KSGY
Sbjct: 64  LRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEVEEFEDIKSGY 123

Query: 119 CITFIFNENPHFENTKLSKTFTFLDEGTTK------ITGTVIKWKEGMGSTNGINHEKNG 172
            I F F+ENP+FEN  L+K F       ++       T T IKWKEG      +  +  G
Sbjct: 124 RINFHFDENPYFENKVLTKEFHLNSAAASENGDWPASTSTPIKWKEGKNLLKLLLTKPYG 183

Query: 173 NKRPLAEE--SFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
           NK+    E  +FF WF++        + DE+AE+IK+DLWPNPL+Y+
Sbjct: 184 NKKKRNSEYKTFFDWFSDNTDP----VNDEIAELIKDDLWPNPLQYY 226

Drosophila melanogaster (taxid: 7227)

>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 OS=Homo sapiens GN=TSPYL4 PE=2 SV=2

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 109/191 (57%), Gaps = 8/191 (4%)

Query: 27  SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHP 86
            ++ L+ +  EL  VN +A    L++E+K+  +RR    +R+ II++IP FW+ AF +HP
Sbjct: 203 CMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHP 262

Query: 87  VLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT 146
            L  +++ +D+ + +YM +L+VE+ K  ++G    FIF  NP+F N  L K +     G 
Sbjct: 263 QLSPMISGQDEDMLRYMINLEVEELKHPRAGCKFKFIFQGNPYFRNEGLVKEYERRSSGR 322

Query: 147 TKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIK 206
                T I+W  G      I+  + GN  P    SFF+WF++    +F    D +AEIIK
Sbjct: 323 VVSLSTPIRWHRGQDPQAHIHRNREGNTIP----SFFNWFSDHSLLEF----DRIAEIIK 374

Query: 207 EDLWPNPLKYF 217
            +LWPNPL+Y+
Sbjct: 375 GELWPNPLQYY 385

Homo sapiens (taxid: 9606)

>sp|Q9H2G4|TSYL2_HUMAN Testis-specific Y-encoded-like protein 2 OS=Homo sapiens GN=TSPYL2 PE=1 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 10/195 (5%)

Query: 28  IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPV 87
           ++ L+++Q +LE VN +A    L +++K+ ++RRP   +R+ II+ IP FW+ AFL+HP 
Sbjct: 216 LQALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPR 275

Query: 88  LCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTT 147
           +  L+N  D+ IF+Y+ +L V+D + +  GY +   F  NP+F N  + K F     G  
Sbjct: 276 ISILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQRNRSGRL 335

Query: 148 KITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIKE 207
               T I+W  G          ++GN+   A  SFFSWF+     +     D +AEIIK 
Sbjct: 336 VSHSTPIRWHRGQEP----QARRHGNQD--ASHSFFSWFSNHSLPE----ADRIAEIIKN 385

Query: 208 DLWPNPLKYFNNEAG 222
           DLW NPL+Y+  E G
Sbjct: 386 DLWVNPLRYYLRERG 400

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Homo sapiens (taxid: 9606)

>sp|Q9BE64|TSYL2_MACFA Testis-specific Y-encoded-like protein 2 OS=Macaca fascicularis GN=TSPYL2 PE=1 SV=1

 Score =  140 bits (353), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 10/195 (5%)

Query: 28  IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPV 87
           ++ L+++Q +LE VN +A    L +++K+ ++RRP   +R+ II+ IP FW+ AFL+HP 
Sbjct: 216 LQALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPR 275

Query: 88  LCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTT 147
           +  L+N  D+ IF+Y+ +L V+D + +  GY +   F  NP+F N  + K F     G  
Sbjct: 276 IPILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQRNRSGRL 335

Query: 148 KITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIKE 207
               T I+W  G          ++GN+   A  SFFSWF+       +   D +AEIIK 
Sbjct: 336 VSHSTPIRWHRGQEP----QARRHGNQD--ASHSFFSWFSNHS----LPEADRIAEIIKN 385

Query: 208 DLWPNPLKYFNNEAG 222
           DLW NPL+Y+  E G
Sbjct: 386 DLWVNPLRYYLRERG 400

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Macaca fascicularis (taxid: 9541)

>sp|Q7TQI8|TSYL2_MOUSE Testis-specific Y-encoded-like protein 2 OS=Mus musculus GN=Tspyl2 PE=1 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 14/201 (6%)

Query: 28  IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPV 87
           ++ L+ +Q +LE VN +A    L +++K+ ++RRP   +R+ II+ IP FW+ AFL+HP 
Sbjct: 209 LQALESIQMDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQHIPGFWVKAFLNHPR 268

Query: 88  LCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTT 147
           +  L+N+ D+ IF+Y+ +L V+D + +  GY +   F  NP+F N  + K F     G  
Sbjct: 269 ISILINQRDRDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMVIVKEFQRNRSGRL 328

Query: 148 KITGTVIKWKEGM--GSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEII 205
               T I+W  G    + N  +H+          ESFF+WF+     +     D +AEII
Sbjct: 329 VSHSTPIRWHRGQEPQAYNRRSHD--------TRESFFNWFSNHSLPE----ADRIAEII 376

Query: 206 KEDLWPNPLKYFNNEAGEEES 226
           K DLW NP++Y+    G   S
Sbjct: 377 KNDLWVNPVRYYMRRGGYRSS 397

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Mus musculus (taxid: 10090)

>sp|Q69ZB3|TSYL5_MOUSE Testis-specific Y-encoded-like protein 5 OS=Mus musculus GN=Tspyl5 PE=2 SV=2

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 120/235 (51%), Gaps = 21/235 (8%)

Query: 2   VADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRR 61
            A  G++ K+ E     G     V S++ L+ VQ +LE +N +A    L + +K+ ++R 
Sbjct: 171 AAPVGEEKKMTEKHAGAG-SPATVGSMDTLETVQLKLETMNAQADRAYLRLSRKFGQLRL 229

Query: 62  PVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCIT 121
               +RN +I+SIP FW  AF +HP L   LN +D+++  Y+N L+VE+    + GY I 
Sbjct: 230 HHLERRNLLIQSIPGFWGQAFQNHPQLSAFLNTKDKEVLSYLNRLEVEELGLARLGYKIK 289

Query: 122 FIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEG--MGSTNGINHEKNGNKRPLAE 179
           F F  NP+F+N  L K +     G        I+W  G  + S +  N E NG       
Sbjct: 290 FYFGRNPYFQNKVLIKEYGCGPSGQVVSRSAPIQWLPGHDLQSLSKENPENNG------- 342

Query: 180 ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF------NNEAGEEESDG 228
            SFF WF+     +     D++ EII EDLWPNPL+Y+        E G+EE  G
Sbjct: 343 -SFFGWFSNHSSIE----SDKIVEIINEDLWPNPLQYYLISEEARGEKGKEERPG 392

Involved in modulation of cell growth and cellular response to gamma radiation probably via regulation of the Akt signaling pathway. Involved in regulation of p53/TP53. Suppresses p53/TP53 protein levels and promotes its ubiquitination; the function is dependent on USP7 and independent on MDM2. Proposed to displace p53/TP53 from interaction with USP7.

Mus musculus (taxid: 10090)

>sp|Q8VD63|TSYL4_MOUSE Testis-specific Y-encoded-like protein 4 OS=Mus musculus GN=Tspyl4 PE=1 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 107/191 (56%), Gaps = 8/191 (4%)

Query: 27  SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHP 86
            ++ L+ +  EL  VN +A    L++E+K+  +RR    +R+ II++IP FW+ AF +HP
Sbjct: 195 CMDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHP 254

Query: 87  VLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT 146
            L  +++ +D+ + +YM +L+VE+ K  + G    FIF  NP+F N  L K +     G 
Sbjct: 255 QLSPMISGQDEDMMRYMINLEVEELKQPRVGCKFKFIFQSNPYFRNEGLVKEYERRSSGR 314

Query: 147 TKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIK 206
                T I+W  G      I+  + GN  P    SFF+WF++    +F    D +AEIIK
Sbjct: 315 VVSLSTPIRWHRGQEPQAHIHRNREGNTIP----SFFNWFSDHSLLEF----DRIAEIIK 366

Query: 207 EDLWPNPLKYF 217
            +LW NPL+Y+
Sbjct: 367 GELWSNPLQYY 377

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
225452785	255	PREDICTED: protein SET [Vitis vinifera]	0.893	0.854	0.811	2e-99
296082895	253	unnamed protein product [Vitis vinifera]	0.893	0.861	0.811	3e-99
224140961	219	nucleosome/chromatin assembly factor gro	0.897	1.0	0.812	2e-98
225456743	268	PREDICTED: protein SET [Vitis vinifera]	0.942	0.858	0.743	2e-95
356516792	263	PREDICTED: protein SET-like isoform 1 [G	0.897	0.832	0.760	2e-90
356508564	261	PREDICTED: protein SET-like [Glycine max	0.897	0.839	0.755	3e-90
255638203	263	unknown [Glycine max]	0.897	0.832	0.755	2e-89
255646231	258	unknown [Glycine max]	0.922	0.872	0.735	4e-89
26451105	228	unknown protein [Arabidopsis thaliana] g	0.918	0.982	0.732	5e-89
356562830	258	PREDICTED: protein SET-like [Glycine max	0.918	0.868	0.738	8e-89

>gi|225452785|ref|XP_002283325.1| PREDICTED: protein SET [Vitis vinifera]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/223 (81%), Positives = 205/223 (91%), Gaps = 5/223 (2%)

Query: 1   MVADRGKKSKVAE---DENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYN 57
           MVAD+GKKSKV++   +++AD ID ELVLSIEKLQE+QDELEKVNEEASDKVLE+EQKYN
Sbjct: 1   MVADKGKKSKVSDRIVEDDADHIDGELVLSIEKLQELQDELEKVNEEASDKVLEVEQKYN 60

Query: 58  EIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSG 117
           EIRRPVY KRNEIIKSIPDFWL AFLSHP LCDLL+EEDQKIFKY++SL+VEDFKDVKSG
Sbjct: 61  EIRRPVYVKRNEIIKSIPDFWLTAFLSHPALCDLLSEEDQKIFKYLDSLEVEDFKDVKSG 120

Query: 118 YCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPL 177
           Y I F FN+NP+FE+TKL+KTFTF DEGTTKITGT IKWKEGMG++NG+NH+K  NKRP 
Sbjct: 121 YSIAFNFNQNPYFEDTKLTKTFTFFDEGTTKITGTAIKWKEGMGASNGVNHDKK-NKRPF 179

Query: 178 AEESFFSWFAETEQKDFVE-LQDEVAEIIKEDLWPNPLKYFNN 219
           AEESFF+WF+ET+QKD +E LQDEVAEIIKEDLWPNPLKYFNN
Sbjct: 180 AEESFFAWFSETQQKDIMEGLQDEVAEIIKEDLWPNPLKYFNN 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082895|emb|CBI22196.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/223 (81%), Positives = 205/223 (91%), Gaps = 5/223 (2%)

Query: 1   MVADRGKKSKVAE---DENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYN 57
           MVAD+GKKSKV++   +++AD ID ELVLSIEKLQE+QDELEKVNEEASDKVLE+EQKYN
Sbjct: 1   MVADKGKKSKVSDRIVEDDADHIDGELVLSIEKLQELQDELEKVNEEASDKVLEVEQKYN 60

Query: 58  EIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSG 117
           EIRRPVY KRNEIIKSIPDFWL AFLSHP LCDLL+EEDQKIFKY++SL+VEDFKDVKSG
Sbjct: 61  EIRRPVYVKRNEIIKSIPDFWLTAFLSHPALCDLLSEEDQKIFKYLDSLEVEDFKDVKSG 120

Query: 118 YCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPL 177
           Y I F FN+NP+FE+TKL+KTFTF DEGTTKITGT IKWKEGMG++NG+NH+K  NKRP 
Sbjct: 121 YSIAFNFNQNPYFEDTKLTKTFTFFDEGTTKITGTAIKWKEGMGASNGVNHDKK-NKRPF 179

Query: 178 AEESFFSWFAETEQKDFVE-LQDEVAEIIKEDLWPNPLKYFNN 219
           AEESFF+WF+ET+QKD +E LQDEVAEIIKEDLWPNPLKYFNN
Sbjct: 180 AEESFFAWFSETQQKDIMEGLQDEVAEIIKEDLWPNPLKYFNN 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140961|ref|XP_002323845.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222866847|gb|EEF03978.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/219 (81%), Positives = 193/219 (88%)

Query: 1   MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIR 60
           MVAD+GKK KV E+E  D ID ELV+SIEKLQE+QDELEK+NE+ASD+VLEIEQKYNE+R
Sbjct: 1   MVADKGKKLKVTEEEETDHIDGELVISIEKLQELQDELEKINEQASDEVLEIEQKYNEVR 60

Query: 61  RPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCI 120
           RPVY KRN+IIK IPDFWL AFLSHP LCDLL E+DQKIFKY++SL VED KDVKSGY I
Sbjct: 61  RPVYTKRNDIIKCIPDFWLTAFLSHPALCDLLTEDDQKIFKYLDSLHVEDSKDVKSGYSI 120

Query: 121 TFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEE 180
           TF F ENPHFE+TKL KTFTF DEGTTKITGT IKWKEGMG+ NG NHEK GNKRPLAE 
Sbjct: 121 TFNFKENPHFEDTKLIKTFTFSDEGTTKITGTDIKWKEGMGTANGGNHEKKGNKRPLAEL 180

Query: 181 SFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNN 219
           SFFSWFAETEQK+  EL DEVAEIIKEDLWPNPLKYFNN
Sbjct: 181 SFFSWFAETEQKEITELHDEVAEIIKEDLWPNPLKYFNN 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456743|ref|XP_002275632.1| PREDICTED: protein SET [Vitis vinifera] gi|297733991|emb|CBI15238.3| unnamed protein product [Vitis vinifera]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/234 (74%), Positives = 205/234 (87%), Gaps = 4/234 (1%)

Query: 1   MVADRGKKSKVAEDE---NADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYN 57
           MVAD+GKK K +E E   N+D ID +LVLSIEKLQE+QD+LEK+NEEASDKVLE+EQKYN
Sbjct: 1   MVADKGKKLKQSEKEEEVNSDHIDGDLVLSIEKLQEIQDDLEKINEEASDKVLEVEQKYN 60

Query: 58  EIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSG 117
           EIR+P+Y+KRN+IIKSIPDFWL AFLSHP L DLL+EEDQKIFKY++SL+VEDFKDVKSG
Sbjct: 61  EIRKPIYDKRNDIIKSIPDFWLTAFLSHPALGDLLSEEDQKIFKYLSSLEVEDFKDVKSG 120

Query: 118 YCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPL 177
           Y ITF FN NP FE+TKL KTFTFLDEG TKI+ T IKWK+GMG  NG+NHEK GNKRP+
Sbjct: 121 YSITFNFNPNPFFEDTKLKKTFTFLDEGITKISVTSIKWKDGMGIPNGVNHEKKGNKRPI 180

Query: 178 AEESFFSWFAETEQKDFV-ELQDEVAEIIKEDLWPNPLKYFNNEAGEEESDGDD 230
           A+ SFFSWF+ET+QKD + ++ DE+AEIIKEDLWPNPL YFN+EA EE+ DG+D
Sbjct: 181 ADASFFSWFSETQQKDIMDDIHDEIAEIIKEDLWPNPLTYFNSEADEEDFDGED 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516792|ref|XP_003527077.1| PREDICTED: protein SET-like isoform 1 [Glycine max]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/221 (76%), Positives = 192/221 (86%), Gaps = 2/221 (0%)

Query: 1   MVADRGKKSKVAED-ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEI 59
           MVADR KK KV+E  EN D ID ELVLSIEKLQE+QDELEK+NEEASDKVLEIEQKYNEI
Sbjct: 1   MVADRSKKPKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 60  RRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYC 119
           R+PVY+KRN+IIK+IPDFWL AFLSHP L DLLNEEDQKIFKY++SL+VEDFKDVKSGY 
Sbjct: 61  RKPVYDKRNDIIKAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 120 ITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAE 179
           ITF FN NP+FE+TKL KT+TFL+EGTTK+T T IKWKEG G  NG+NHEK  NKR   +
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFLEEGTTKVTATPIKWKEGKGIPNGVNHEKKRNKRAPTD 180

Query: 180 ESFFSWFAETEQKDFV-ELQDEVAEIIKEDLWPNPLKYFNN 219
            SFFSWF++TEQKD + ++ DEVAE+IK+DLWPNPL YFNN
Sbjct: 181 VSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508564|ref|XP_003523025.1| PREDICTED: protein SET-like [Glycine max]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/221 (75%), Positives = 192/221 (86%), Gaps = 2/221 (0%)

Query: 1   MVADRGKKSKVAED-ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEI 59
           MVADR KK KV++  EN D ID ELVLSIEKLQE+QDELEK+NEEASDKVLEIEQKYNEI
Sbjct: 1   MVADRSKKPKVSDKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 60  RRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYC 119
           R+PVY+KRN+II +IPDFWL AFLSHP L DLLNEEDQKIFKY++SL+VEDFKDVKSGY 
Sbjct: 61  RKPVYDKRNDIINAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 120 ITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAE 179
           ITF FN NP+FE+TKL KT+TFL+EGTTK+T T IKWKEG G  NG+NHEK GNKR   +
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFLEEGTTKVTATPIKWKEGKGIPNGVNHEKKGNKRAPTD 180

Query: 180 ESFFSWFAETEQKDFV-ELQDEVAEIIKEDLWPNPLKYFNN 219
            SFFSWF++TEQKD + ++ DEVAE+IK+DLWPNPL YFNN
Sbjct: 181 VSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638203|gb|ACU19415.1| unknown [Glycine max]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/221 (75%), Positives = 191/221 (86%), Gaps = 2/221 (0%)

Query: 1   MVADRGKKSKVAED-ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEI 59
           MVADR KK KV+E  EN D ID ELVLSIEKLQE+QDELEK+NEEASDKVLEIEQKYNEI
Sbjct: 1   MVADRSKKPKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 60  RRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYC 119
           R+PVY+KRN+IIK+IPDFWL AFLSHP L DLLNEEDQKIFKY++SL+VEDFKDVKSGY 
Sbjct: 61  RKPVYDKRNDIIKTIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 120 ITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAE 179
           ITF FN NP+FE+TKL KT+TFL+EGTTK+T T IKWKEG    NG+NHEK  NKR   +
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFLEEGTTKVTATPIKWKEGKDIPNGVNHEKKRNKRAPTD 180

Query: 180 ESFFSWFAETEQKDFV-ELQDEVAEIIKEDLWPNPLKYFNN 219
            SFFSWF++TEQKD + ++ DEVAE+IK+DLWPNPL YFNN
Sbjct: 181 VSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646231|gb|ACU23600.1| unknown [Glycine max]

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 167/227 (73%), Positives = 193/227 (85%), Gaps = 2/227 (0%)

Query: 1   MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIR 60
           MV D  KK KVAE+   D ID ELVLSIEKLQEVQDEL+K+NEEASDKVLE+EQKYNEIR
Sbjct: 1   MVGDNTKKLKVAENL-EDSIDGELVLSIEKLQEVQDELDKINEEASDKVLEVEQKYNEIR 59

Query: 61  RPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCI 120
           +PVY+KRN+++KSIPDFW  AF+SHP LC+LLN EDQKIFKY+ SLDVED KDVKSGY I
Sbjct: 60  KPVYDKRNDVVKSIPDFWFTAFMSHPALCELLNVEDQKIFKYLGSLDVEDNKDVKSGYSI 119

Query: 121 TFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEE 180
           TF FN NP+FENTKL+KTFTFL+EGTTKIT T IKWKEG G  NG++H+KNGNKR   + 
Sbjct: 120 TFNFNPNPYFENTKLTKTFTFLEEGTTKITATPIKWKEGKGLPNGLDHDKNGNKRARIDI 179

Query: 181 SFFSWFAETEQKDFV-ELQDEVAEIIKEDLWPNPLKYFNNEAGEEES 226
           SFFSWF++ EQKD V E+ DEVAE+IK+DLWPNPL YFNNE  EE++
Sbjct: 180 SFFSWFSDCEQKDDVDEIHDEVAELIKDDLWPNPLTYFNNELDEEDA 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451105|dbj|BAC42657.1| unknown protein [Arabidopsis thaliana] gi|28950777|gb|AAO63312.1| At1g18800 [Arabidopsis thaliana]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 167/228 (73%), Positives = 195/228 (85%), Gaps = 4/228 (1%)

Query: 1   MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIR 60
           MV D+ KK+K  E+EN + ID ELVLSIEKLQE+QD+LEK+NE+ASD+VLE+EQKYN IR
Sbjct: 1   MVTDKSKKAK-TEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIR 59

Query: 61  RPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCI 120
           +PVY+KRNEIIK+IPDFWL AFLSHP L +LL EEDQKIFKY++SLDVED KDVKSGY I
Sbjct: 60  KPVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSI 119

Query: 121 TFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEE 180
           TF FN NP FE+ KL+KTFTFL+EGTTKIT T IKWKEG G  NG+NHEKNGNKR L EE
Sbjct: 120 TFSFNPNPFFEDGKLTKTFTFLEEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 SFFSWFAETEQKDFV--ELQDE-VAEIIKEDLWPNPLKYFNNEAGEEE 225
           SFF+WF++ + K+ V  E+QDE VA+IIKEDLWPNPL YFNN+A EEE
Sbjct: 180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTYFNNDADEEE 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562830|ref|XP_003549671.1| PREDICTED: protein SET-like [Glycine max]

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 167/226 (73%), Positives = 192/226 (84%), Gaps = 2/226 (0%)

Query: 1   MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIR 60
           MV D  KK KVAE+   D ID ELVLSIEKLQEVQDEL+K+NEEASDKVLE+EQKYNEIR
Sbjct: 1   MVGDNTKKLKVAENL-EDSIDGELVLSIEKLQEVQDELDKINEEASDKVLEVEQKYNEIR 59

Query: 61  RPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCI 120
           +PVY+KRN+++KSIPDFW  AF+SHP LC+LLN EDQKIFKY+ SLDVED KDVKSGY I
Sbjct: 60  KPVYDKRNDVVKSIPDFWFTAFMSHPALCELLNVEDQKIFKYLGSLDVEDNKDVKSGYSI 119

Query: 121 TFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEE 180
           TF FN NP+FENTKL+KTFTFL+EGTTKIT T IKWKEG G  NG++H+KNGNKR   + 
Sbjct: 120 TFNFNPNPYFENTKLTKTFTFLEEGTTKITATPIKWKEGKGLPNGLDHDKNGNKRARIDI 179

Query: 181 SFFSWFAETEQKDFV-ELQDEVAEIIKEDLWPNPLKYFNNEAGEEE 225
           SFFSWF++ EQKD V E+ DEVAE+IK+DLWPNPL YFNNE  EE+
Sbjct: 180 SFFSWFSDCEQKDDVDEIHDEVAELIKDDLWPNPLTYFNNELDEED 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2034995	256	NRP2 "AT1G18800" [Arabidopsis	0.885	0.843	0.731	2.7e-84
TAIR|locus:2019075	264	NRP1 "AT1G74560" [Arabidopsis	0.860	0.795	0.694	7.9e-78
ZFIN|ZDB-GENE-030131-433	275	setb "SET translocation (myelo	0.872	0.774	0.437	6.9e-47
UNIPROTKB|F2Z4L4	277	SET "Uncharacterized protein"	0.872	0.768	0.433	6.2e-46
UNIPROTKB|F1RR69	289	SET "Uncharacterized protein"	0.836	0.705	0.431	9.1e-45
MGI|MGI:1860267	289	Set "SET nuclear oncogene" [Mu	0.823	0.695	0.433	1.5e-44
RGD|1307467	289	Set "SET nuclear oncogene" [Ra	0.823	0.695	0.433	1.5e-44
ZFIN|ZDB-GENE-030131-2221	269	seta "SET translocation (myelo	0.872	0.791	0.428	1.5e-44
UNIPROTKB|Q5VXV2	268	SET "Protein SET" [Homo sapien	0.795	0.723	0.437	1.9e-44
UNIPROTKB|Q01105	290	SET "Protein SET" [Homo sapien	0.766	0.644	0.448	2.4e-44

TAIR|locus:2034995 NRP2 "AT1G18800" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 161/220 (73%), Positives = 188/220 (85%)

Query:     1 MVADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIR 60
             MV D+ KK+K  E+EN + ID ELVLSIEKLQE+QD+LEK+NE+ASD+VLE+EQKYN IR
Sbjct:     1 MVTDKSKKAKT-EEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIR 59

Query:    61 RPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCI 120
             +PVY+KRNEIIK+IPDFWL AFLSHP L +LL EEDQKIFKY++SLDVED KDVKSGY I
Sbjct:    60 KPVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSI 119

Query:   121 TFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEE 180
             TF FN NP FE+ KL+KTFTFL+EGTTKIT T IKWKEG G  NG+NHEKNGNKR L EE
Sbjct:   120 TFSFNPNPFFEDGKLTKTFTFLEEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query:   181 SFFSWFAETEQKDFVE--LQDE-VAEIIKEDLWPNPLKYF 217
             SFF+WF++ + K+ VE  +QDE VA+IIKEDLWPNPL YF
Sbjct:   180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTYF 219

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0003682 "chromatin binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=IGI

GO:0010311 "lateral root formation" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0042393 "histone binding" evidence=IPI

TAIR|locus:2019075 NRP1 "AT1G74560" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 150/216 (69%), Positives = 178/216 (82%)

Query:     1 MVADRGKKSKV---AEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYN 57
             MVAD+ KKSK+    E+EN + ID ELVLSIEKLQE+QD+LEK+NE+ASD+VLE+EQKYN
Sbjct:     1 MVADKSKKSKIEEKGEEENLEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYN 60

Query:    58 EIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSG 117
              IR+PVY+KRNE+I+SIP FW+ AFLSHP L DLL EEDQKIFKY+NSL+VED KDVKSG
Sbjct:    61 VIRKPVYDKRNEVIQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSG 120

Query:   118 YCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHE-KNGNKRP 176
             Y ITF F  NP FE+ KL+KTFTFL+EGTTKIT T IKWKEG G  NG+NH+ K GNKR 
Sbjct:   121 YSITFHFTSNPFFEDAKLTKTFTFLEEGTTKITATPIKWKEGKGLPNGVNHDDKKGNKRA 180

Query:   177 LAEESFFSWFAETEQKDFV--ELQDEVAEIIKEDLW 210
             L EESFF+WF + + K+    E+ DEVA+IIKEDLW
Sbjct:   181 LPEESFFTWFTDAQHKEDAGDEIHDEVADIIKEDLW 216

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0003682 "chromatin binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=IGI

GO:0010311 "lateral root formation" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0042393 "histone binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

ZFIN|ZDB-GENE-030131-433 setb "SET translocation (myeloid leukemia-associated) B" [Danio rerio (taxid:7955)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 98/224 (43%), Positives = 144/224 (64%)

Query:     1 MVADRGKKSKVAEDENADGIDT----ELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKY 56
             M A   K S+  ++ N DG D     E   +IE + EVQ+E++++NE+AS+++L++EQKY
Sbjct:     1 MSASAAKVSRKEQNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKY 60

Query:    57 NEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKS 116
             N++R+P + KR+E+I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KS
Sbjct:    61 NKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKS 120

Query:   117 GYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTN--GINHEKNGNK 174
             GY I F F+ENP+FEN  LSK F   + G      T IKWK G   T   G    K G K
Sbjct:   121 GYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKAGKDLTKRTGQTPNKAGKK 180

Query:   175 RPLAE-ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
             R   E ESFF+WF  T+  D     DE+ E+IK+D+WPNPL+Y+
Sbjct:   181 RQHEEPESFFTWF--TDHSDAGA--DELGEVIKDDIWPNPLQYY 220

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F2Z4L4 SET "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 97/224 (43%), Positives = 143/224 (63%)

Query:     1 MVADRGKKSKVAEDENADGIDT----ELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKY 56
             M A   K SK   + N DG D     E   +IE + EVQ+E++++NE+AS+++L++EQKY
Sbjct:     1 MSAPAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKY 60

Query:    57 NEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKS 116
             N++R+P + KR+E+I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KS
Sbjct:    61 NKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKS 120

Query:   117 GYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKN--GNK 174
             GY I F F+ENP+FEN  LSK F   + G      T IKWK G   T   +  +N    K
Sbjct:   121 GYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRK 180

Query:   175 RPLAE-ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
             R   E ESFF+WF  T+  D     DE+ E+IK+D+WPNPL+Y+
Sbjct:   181 RQHEEPESFFTWF--TDHSDAGA--DELGEVIKDDIWPNPLQYY 220

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F1RR69 SET "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 91/211 (43%), Positives = 137/211 (64%)

Query:    10 KVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNE 69
             K  E  N    + E   +IE + EVQ+E++++NE+AS+++L++EQKYN++R+P + KR+E
Sbjct:    26 KPEETSNLPKEEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSE 85

Query:    70 IIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPH 129
             +I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KSGY I F F+ENP+
Sbjct:    86 LIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPY 145

Query:   130 FENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKN--GNKRPLAE-ESFFSWF 186
             FEN  LSK F   + G      T IKWK G   T   +  +N    KR   E ESFF+WF
Sbjct:   146 FENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF 205

Query:   187 AETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
               T+  D     DE+ E+IK+D+WPNPL+Y+
Sbjct:   206 --TDHSDAGA--DELGEVIKDDIWPNPLQYY 232

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

MGI|MGI:1860267 Set "SET nuclear oncogene" [Mus musculus (taxid:10090)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 92/212 (43%), Positives = 141/212 (66%)

Query:    13 EDENAD-GI---DTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRN 68
             ED++A  G+   + E   +IE + EVQ+E++++NE+AS+++L++EQKYN++R+P + KR+
Sbjct:    25 EDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRS 84

Query:    69 EIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENP 128
             E+I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KSGY I F F+ENP
Sbjct:    85 ELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENP 144

Query:   129 HFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKN--GNKRPLAE-ESFFSW 185
             +FEN  LSK F   + G      T IKWK G   T   +  +N    KR   E ESFF+W
Sbjct:   145 YFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTW 204

Query:   186 FAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
             F  T+  D     DE+ E+IK+D+WPNPL+Y+
Sbjct:   205 F--TDHSDAGA--DELGEVIKDDIWPNPLQYY 232

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|1307467 Set "SET nuclear oncogene" [Rattus norvegicus (taxid:10116)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 92/212 (43%), Positives = 141/212 (66%)

Query:    13 EDENAD-GI---DTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRN 68
             ED++A  G+   + E   +IE + EVQ+E++++NE+AS+++L++EQKYN++R+P + KR+
Sbjct:    25 EDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRS 84

Query:    69 EIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENP 128
             E+I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KSGY I F F+ENP
Sbjct:    85 ELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENP 144

Query:   129 HFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKN--GNKRPLAE-ESFFSW 185
             +FEN  LSK F   + G      T IKWK G   T   +  +N    KR   E ESFF+W
Sbjct:   145 YFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTW 204

Query:   186 FAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
             F  T+  D     DE+ E+IK+D+WPNPL+Y+
Sbjct:   205 F--TDHSDAGA--DELGEVIKDDIWPNPLQYY 232

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

ZFIN|ZDB-GENE-030131-2221 seta "SET translocation (myeloid leukemia-associated) A" [Danio rerio (taxid:7955)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 96/224 (42%), Positives = 142/224 (63%)

Query:     1 MVADRGKKSKVAEDENADGIDT----ELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKY 56
             M A   K SK   + N DG D     E   +IE + EVQ+E++++NE+AS+++L++EQKY
Sbjct:     1 MSASAAKVSKKELNSNHDGGDETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKY 60

Query:    57 NEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKS 116
             N++R+P + KR+E+I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KS
Sbjct:    61 NKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKS 120

Query:   117 GYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEG--MGSTNGINHEKNGNK 174
             GY I F F+EN +FEN  LSK     + G      T IKWK G  + S +     K G K
Sbjct:   121 GYRIDFYFDENMYFENKVLSKEIHLNESGDPTSKSTEIKWKPGKDLTSRSSQTQSKAGKK 180

Query:   175 RPLAE-ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
             R   E ESFF+WF  T+  D     DE+ E+IK+D+WPNPL+Y+
Sbjct:   181 RQHEEPESFFTWF--TDHAD--SGADELGEVIKDDIWPNPLQYY 220

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5VXV2 SET "Protein SET" [Homo sapiens (taxid:9606)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 88/201 (43%), Positives = 135/201 (67%)

Query:    20 IDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWL 79
             ++ E   +IE + EVQ+E++++NE+AS+++L++EQKYN++R+P + KR+E+I  IP+FW+
Sbjct:    15 LEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWV 74

Query:    80 NAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTF 139
               F++HP +  LL EED++   Y+  ++V +F+D+KSGY I F F+ENP+FEN  LSK F
Sbjct:    75 TTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF 134

Query:   140 TFLDEGTTKITGTVIKWKEGMGSTNGINHEKN--GNKRPLAE-ESFFSWFAETEQKDFVE 196
                + G      T IKWK G   T   +  +N    KR   E ESFF+WF  T+  D   
Sbjct:   135 HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF--TDHSDAGA 192

Query:   197 LQDEVAEIIKEDLWPNPLKYF 217
               DE+ E+IK+D+WPNPL+Y+
Sbjct:   193 --DELGEVIKDDIWPNPLQYY 211

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|Q01105 SET "Protein SET" [Homo sapiens (taxid:9606)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 87/194 (44%), Positives = 132/194 (68%)

Query:    27 SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHP 86
             +IE + EVQ+E++++NE+AS+++L++EQKYN++R+P + KR+E+I  IP+FW+  F++HP
Sbjct:    44 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 103

Query:    87 VLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT 146
              +  LL EED++   Y+  ++V +F+D+KSGY I F F+ENP+FEN  LSK F   + G 
Sbjct:   104 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGD 163

Query:   147 TKITGTVIKWKEGMGSTNGINHEKN--GNKRPLAE-ESFFSWFAETEQKDFVELQDEVAE 203
                  T IKWK G   T   +  +N    KR   E ESFF+WF  T+  D     DE+ E
Sbjct:   164 PSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWF--TDHSDAGA--DELGE 219

Query:   204 IIKEDLWPNPLKYF 217
             +IK+D+WPNPL+Y+
Sbjct:   220 VIKDDIWPNPLQYY 233

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006337 "nucleosome disassembly" evidence=TAS

GO:0042393 "histone binding" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=NAS

GO:0035067 "negative regulation of histone acetylation" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0004864 "protein phosphatase inhibitor activity" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IGI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020937001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (255 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017697001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (86 aa)				•					0.608
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•					0.595
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•					0.544
	GSVIVG00017910001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)				•					0.516
	GSVIVG00014203001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (151 aa)				•					0.503
	GSVIVG00000534001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (338 aa)				•					0.501
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.496
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•					0.488
	GSVIVG00002607001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (114 aa)				•			•		0.473
	GSVIVG00014439001	RecName- Full=Diphthine synthase; EC=2.1.1.98;; Required for the methylation step in diphthamid [...] (285 aa)				•					0.471

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam00956	236	pfam00956, NAP, Nucleosome assembly protein (NAP)	2e-51
PTZ00008	185	PTZ00008, PTZ00008, (NAP-S) nucleosome assembly pr	1e-25
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	6e-18

>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP)

 Score =  166 bits (423), Expect = 2e-51
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 39/234 (16%)

Query: 27  SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII--------------- 71
            +E L+ +Q EL+++  +  ++VLE+E+KY+++ +P+Y+KR EII               
Sbjct: 3   RVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTEVEEEEPE 62

Query: 72  -KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHF 130
            K IP FWL A  +HP+L +++ E D++  KY+  + VE  +D K G+ + F F  NP+F
Sbjct: 63  EKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLIFHFAPNPYF 122

Query: 131 ENTKLSKTFTFLDEG---TTKITGTVIKWKEGMGSTNGINHEKNGNKRP---------LA 178
            N  L+KT+   DEG     K  GT I+WKEG   T     +K  NK+          + 
Sbjct: 123 TNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQTRTITKTVP 182

Query: 179 EESFFSWF-----------AETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEA 221
            ESFF++F            + E ++ +EL  E+ EIIK+DL P  L Y+  EA
Sbjct: 183 AESFFNFFSPPKVPDDDDDDDEELEEELELDYEIGEIIKDDLIPRALDYYTGEA 236

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236

>gnl|CDD|185394 PTZ00008, PTZ00008, (NAP-S) nucleosome assembly protein-S; Provisional

 Score = 99.1 bits (247), Expect = 1e-25
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 7/181 (3%)

Query: 39  EKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQK 98
            +++EE + + + I+++++E ++P++ KR EII+ IP FW +    HP L   L  ED  
Sbjct: 1   MELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALSY-LVPEDID 59

Query: 99  IFKYMNSLDVEDFKDVKSGYCITFIFNE--NPHFENTKLSKTFTFLDEGTTKITGTVIKW 156
           I +++  +D+ED  D    Y IT IF+E      E   L K   F +     +  T IKW
Sbjct: 60  ILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKNNQEKVVEVTKIKW 119

Query: 157 KEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKY 216
           KEG          ++         S F WF E E +D      +V EII+ ++W  PL Y
Sbjct: 120 KEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQDRP----DVGEIIRREIWHAPLLY 175

Query: 217 F 217
           +
Sbjct: 176 Y 176

Length = 185

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 81.0 bits (200), Expect = 6e-18
 Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 43/275 (15%)

Query: 13  EDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII- 71
           +DE    +  E   +++KLQ +Q E + +  E + ++ ++  KY ++  P+Y+KR E + 
Sbjct: 28  DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALV 87

Query: 72  ---------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVK-SGYCIT 121
                      +P FWL A  ++  L   + E D+ I  Y++ +  E  +  K  G+ + 
Sbjct: 88  QNGGAEIGTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILV 147

Query: 122 FIFNENPHFENTKLSKTF--TFLDEGT----TKITGTVIKWKEGMGSTNGINHEKNGNKR 175
           F F  NP F NT L+KT+    LD       +    T I WK+G   T  +  +K  +K+
Sbjct: 148 FTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEIDWKQGKDVTKKVVTKKQRHKK 207

Query: 176 P---------LAEESFFSWFAETE-----------QKDFVELQD------EVAEIIKEDL 209
                     +  ESFF++F   E           + +  EL+       E+   I++ L
Sbjct: 208 TKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRDKL 267

Query: 210 WPNPLKYFNNEAGEEESDGDDEENGENGDGDEDGN 244
            P  + +F  EA +E+SD   +E+ ++ D  +  +
Sbjct: 268 IPYAVYWFLGEAIDEDSDYSSDEDDDDYDSYDSSD 302

Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PTZ00007	337	(NAP-L) nucleosome assembly protein -L; Provisiona	100.0
KOG1507	358	consensus Nucleosome assembly protein NAP-1 [Chrom	100.0
PTZ00008	185	(NAP-S) nucleosome assembly protein-S; Provisional	100.0
PF00956	244	NAP: Nucleosome assembly protein (NAP); InterPro:	100.0
KOG1508	260	consensus DNA replication factor/protein phosphata	100.0
PF11629	49	Mst1_SARAH: C terminal SARAH domain of Mst1; Inter	95.84
PF07352	149	Phage_Mu_Gam: Bacteriophage Mu Gam like protein; I	91.23
COG4396	170	Mu-like prophage host-nuclease inhibitor protein G	85.88

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional

Probab=100.00  E-value=1.3e-59  Score=425.52  Aligned_cols=213  Identities=31%  Similarity=0.559  Sum_probs=187.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhc----------cCcchhhHHhhh
Q 026031           15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIK----------SIPDFWLNAFLS   84 (244)
Q Consensus        15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~----------~IP~FW~~vl~n   84 (244)
                      +.+..||+.++.++.+|+.||.++..|+++|++++++|+++|.++++|+|++|++||+          +||+||++||+|
T Consensus        30 ~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~vL~N  109 (337)
T PTZ00007         30 EKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLTAMKN  109 (337)
T ss_pred             chhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHHHHHc
Confidence            4577999999999999999999999999999999999999999999999999999999          799999999999


Q ss_pred             chhhhcccCcchHHhhcCcceeEEEEccCCC-cCeEEEEEeccCCCcccceEEEEEeecC-C---Cc--eeeecceeecc
Q 026031           85 HPVLCDLLNEEDQKIFKYMNSLDVEDFKDVK-SGYCITFIFNENPHFENTKLSKTFTFLD-E---GT--TKITGTVIKWK  157 (244)
Q Consensus        85 ~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~-~~f~l~F~F~~NpyF~N~~L~K~~~~~~-~---g~--~~~~~t~I~Wk  157 (244)
                      |+.|+.+|++.|++||+||+||+|++..+.. ++|+|+|+|++||||+|++|||+|++.. .   |+  ..+++|+|+||
T Consensus       110 h~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~I~WK  189 (337)
T PTZ00007        110 NNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEIDWK  189 (337)
T ss_pred             CccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeeeceee
Confidence            9999999999999999999999999886644 8999999999999999999999999853 2   23  35689999999


Q ss_pred             CCCCCCcccccccCCCC-----c----ccccccccccccccccccc-----------------ccchHHHHHHHHhcccc
Q 026031          158 EGMGSTNGINHEKNGNK-----R----PLAEESFFSWFAETEQKDF-----------------VELQDEVAEIIKEDLWP  211 (244)
Q Consensus       158 ~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~-----------------~~~~~ei~~~i~dei~p  211 (244)
                      +|+++|++...+|++++     |    +++..|||+||+++..+..                 ++.+++||++|+++|||
T Consensus       190 ~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ikd~IIP  269 (337)
T PTZ00007        190 QGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRDKLIP  269 (337)
T ss_pred             CCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHHHhccc
Confidence            99999998766544333     2    3466899999998765431                 12567999999999999


Q ss_pred             chhhhhccccCCCCCC
Q 026031          212 NPLKYFNNEAGEEESD  227 (244)
Q Consensus       212 ~al~yy~g~~~~e~~~  227 (244)
                      +||.||+|++.+++++
T Consensus       270 ~AV~yftGea~d~~~~  285 (337)
T PTZ00007        270 YAVYWFLGEAIDEDSD  285 (337)
T ss_pred             ccHHhhCCCccccccc
Confidence            9999999998776653

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.4e-58  Score=408.66  Aligned_cols=211  Identities=31%  Similarity=0.598  Sum_probs=187.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhh-----------------------
Q 026031           15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII-----------------------   71 (244)
Q Consensus        15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI-----------------------   71 (244)
                      .++..||+.|+.||.+|+.||.+...++.+|.+++++|++||.++++|||.||.+||                       
T Consensus        66 ~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~  145 (358)
T KOG1507|consen   66 DMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNL  145 (358)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccccc
Confidence            679999999999999999999999999999999999999999999999999999999                       


Q ss_pred             ------------ccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEE
Q 026031           72 ------------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTF  139 (244)
Q Consensus        72 ------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~  139 (244)
                                  +|||+||++||+|++.++.+|+++|++||+||+||++.+..++..||+|.|+|.+||||+|++|||+|
T Consensus       146 ~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY  225 (358)
T KOG1507|consen  146 AEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTY  225 (358)
T ss_pred             ccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeee
Confidence                        37999999999999999999999999999999999999998867999999999999999999999999


Q ss_pred             eecC----------CCce--eeecceeeccCCCCCCcccccccCCC-----C----cccccccccccccccccccc----
Q 026031          140 TFLD----------EGTT--KITGTVIKWKEGMGSTNGINHEKNGN-----K----RPLAEESFFSWFAETEQKDF----  194 (244)
Q Consensus       140 ~~~~----------~g~~--~~~~t~I~Wk~gk~~t~~~~~~k~~~-----~----r~~~~~SFF~~F~~~~~~~~----  194 (244)
                      ++..          +|+.  .++||.|+|++||++|++.+.+|+.+     .    ++++..||||||+++..++.    
T Consensus       226 ~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~~d~D  305 (358)
T KOG1507|consen  226 FLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDEEDLD  305 (358)
T ss_pred             eeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcccccC
Confidence            9862          2333  47999999999999999866554322     2    23577999999999877632    


Q ss_pred             -------ccchHHHHHHHHhccccchhhhhccccCCCC
Q 026031          195 -------VELQDEVAEIIKEDLWPNPLKYFNNEAGEEE  225 (244)
Q Consensus       195 -------~~~~~ei~~~i~dei~p~al~yy~g~~~~e~  225 (244)
                             ++.|++||+.|++.|+|.||.||+|++.+++
T Consensus       306 ed~~~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~  343 (358)
T KOG1507|consen  306 EDDLEELLELDYEIGETLRDKIIPRAVLWFTGEALEDE  343 (358)
T ss_pred             chHHHHHHHhhHHHHHHHHhhhhhheeeeecccccccc
Confidence                   1356899999999999999999999994444

>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional

Probab=100.00  E-value=1.5e-54  Score=365.02  Aligned_cols=181  Identities=31%  Similarity=0.611  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeE
Q 026031           40 KVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYC  119 (244)
Q Consensus        40 ~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~  119 (244)
                      +|+.++++++++|+++|.++++|+|++|++||++||+||++||+|||.++ +|++.|+++|+||+||+|+...++..||+
T Consensus         2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~   80 (185)
T PTZ00008          2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK   80 (185)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence            57889999999999999999999999999999999999999999999999 99999999999999999997545578999


Q ss_pred             EEEEecc--CCCcccceEEEEEeecCCCceeeecceeeccCCCCCCcccccccCCCCccccccccccccccccccccccc
Q 026031          120 ITFIFNE--NPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVEL  197 (244)
Q Consensus       120 l~F~F~~--NpyF~N~~L~K~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~~F~~~~~~~~~~~  197 (244)
                      |+|+|.+  ||||+|++|||+|++..++..++++|+|+||+|+++|++..+++....++.+..|||+||+++..+    .
T Consensus        81 i~F~F~~~~N~yF~n~~LtK~y~~~~~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~----~  156 (185)
T PTZ00008         81 ITLIFDEKAKEFMEPLVLVKHVIFKNNQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ----D  156 (185)
T ss_pred             EEEEECCCCCCCcCCCEEEEEEEEecCCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc----C
Confidence            9999965  899999999999999887778889999999999999988765433233456779999999987543    5


Q ss_pred             hHHHHHHHHhccccchhhhhccccCCCC
Q 026031          198 QDEVAEIIKEDLWPNPLKYFNNEAGEEE  225 (244)
Q Consensus       198 ~~ei~~~i~dei~p~al~yy~g~~~~e~  225 (244)
                      +++||++|+++|||+||+||+|++.+++
T Consensus       157 ~~eIg~~i~e~i~P~av~yy~ge~~~~~  184 (185)
T PTZ00008        157 RPDVGEIIRREIWHAPLLYYLDTVSIDD  184 (185)
T ss_pred             cHHHHHHHHHhhccchHHhhCCcccccc
Confidence            7899999999999999999999877654

>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus

Probab=100.00  E-value=3e-53  Score=372.30  Aligned_cols=197  Identities=40%  Similarity=0.734  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhcc-------------------CcchhhHHhhhc
Q 026031           25 VLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKS-------------------IPDFWLNAFLSH   85 (244)
Q Consensus        25 ~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~-------------------IP~FW~~vl~n~   85 (244)
                      +++|.+|+.||.++..++.++.+++++|+++|.++++|+|++|++||.+                   ||+||++||+||
T Consensus         1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~   80 (244)
T PF00956_consen    1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH   80 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence            5789999999999999999999999999999999999999999999999                   999999999999


Q ss_pred             hhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEEeecCCCc------eeeecceeeccCC
Q 026031           86 PVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT------TKITGTVIKWKEG  159 (244)
Q Consensus        86 ~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~g~------~~~~~t~I~Wk~g  159 (244)
                      +.++.+|++.|.+||+||+||+|++..++.++|+|+|+|++||||+|++|+|+|++...+.      .++++|+|+||+|
T Consensus        81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~~~~~~~~~~~~t~I~Wk~g  160 (244)
T PF00956_consen   81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGDEEDPDELKSESTPIDWKPG  160 (244)
T ss_dssp             HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSSTTTT-EEEEEE---EBSTT
T ss_pred             chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCCCCCCCcceeeeecccccCC
Confidence            9999999999999999999999999987789999999999999999999999999987665      7899999999999


Q ss_pred             CCCCcccccccCCCC---------cccccccccccccccccccc-------------ccchHHHHHHHHhccccchhhhh
Q 026031          160 MGSTNGINHEKNGNK---------RPLAEESFFSWFAETEQKDF-------------VELQDEVAEIIKEDLWPNPLKYF  217 (244)
Q Consensus       160 k~~t~~~~~~k~~~~---------r~~~~~SFF~~F~~~~~~~~-------------~~~~~ei~~~i~dei~p~al~yy  217 (244)
                      +++|++...++++.+         +....+|||+||++...+++             +..+++||.+|+++|||+||.||
T Consensus       161 kd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~yy  240 (244)
T PF00956_consen  161 KDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKYY  240 (244)
T ss_dssp             TCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             CCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHHHHHHHhheechHHHHh
Confidence            999998765543222         22456899999996543310             12578999999999999999999


Q ss_pred             cccc
Q 026031          218 NNEA  221 (244)
Q Consensus       218 ~g~~  221 (244)
                      +|+|
T Consensus       241 ~gea  244 (244)
T PF00956_consen  241 TGEA  244 (244)
T ss_dssp             HTCT
T ss_pred             CCCC
Confidence            9976

The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=100.00  E-value=1.2e-33  Score=249.49  Aligned_cols=204  Identities=43%  Similarity=0.797  Sum_probs=184.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhchhhhcccCc
Q 026031           15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNE   94 (244)
Q Consensus        15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~   94 (244)
                      +.+...+..++.++..|++||.+++.++++..+++++++++|...++|+|++|+.||+.||+||.+++.|||.++.+|..
T Consensus        21 ~~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~  100 (260)
T KOG1508|consen   21 EHLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPE  100 (260)
T ss_pred             cccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhh
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEEeecCCCceeeecceeeccCCCCCCcccccccCCCC
Q 026031           95 EDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNK  174 (244)
Q Consensus        95 ~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~  174 (244)
                      .|.+++.||..+.|+.+.+..+||++.|+|.+||||+|.+++|+|++...|..++.+|+|.|+.|+++.+.......+++
T Consensus       101 ~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k  180 (260)
T KOG1508|consen  101 EDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESGKPSSESTPISWKEGKPLPNPVKRGELKNK  180 (260)
T ss_pred             hhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeecccCcccccccccccCCCCCcccccccccccc
Confidence            99999999999999999888999999999999999999999999999998888899999999999998766542222233


Q ss_pred             ccccccccccccccccccccccchHHHHHHHHhccccchhhhhccccC
Q 026031          175 RPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEAG  222 (244)
Q Consensus       175 r~~~~~SFF~~F~~~~~~~~~~~~~ei~~~i~dei~p~al~yy~g~~~  222 (244)
                      +.....|||.||+.+.+++    ..+|+++|++.+||++++||+-.+.
T Consensus       181 ~~~~~~s~f~wf~~~~~~~----~d~i~ei~~~~~~~~~~~~~~~~~~  224 (260)
T KOG1508|consen  181 NGDGPKSFFEWFSDTSLKE----FDEILEIIKDELWPNPLQYYLEPDG  224 (260)
T ss_pred             cCcccccHHHHHHhccCCC----ccchhhhhhcccccchhhhhccccc
Confidence            4455689999999998764    3489999999999999999987643

>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name

Probab=95.84  E-value=0.032  Score=36.85  Aligned_cols=36  Identities=25%  Similarity=0.570  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026031           31 LQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNK   66 (244)
Q Consensus        31 L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~k   66 (244)
                      +..||..+..|..++++|+-+|++.|..+++|+.+.
T Consensus        10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldA   45 (49)
T PF11629_consen   10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDA   45 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence            567899999999999999999999999999999864

In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.

>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []

Probab=91.23  E-value=0.77  Score=37.28  Aligned_cols=56  Identities=21%  Similarity=0.391  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcch
Q 026031           22 TELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDF   77 (244)
Q Consensus        22 ~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~F   77 (244)
                      .++-.++..+..+|.++..++..+..++-++...|.....|+-.+...+-..|-.|
T Consensus         3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y   58 (149)
T PF07352_consen    3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY   58 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999999998887776665544

This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.

>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]

Probab=85.88  E-value=1.9  Score=34.85  Aligned_cols=59  Identities=20%  Similarity=0.360  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchh
Q 026031           20 IDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFW   78 (244)
Q Consensus        20 ~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW   78 (244)
                      --.+|...|..|-+||.+...|+.++..++.+++..|..+..|+-+.-..+-++|..|.
T Consensus        16 ~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC   74 (170)
T COG4396          16 DKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC   74 (170)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999999988777777776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
2e50_A	225	Crystal Structure Of SetTAF-1betaINHAT Length = 225		2e-46
3kyp_A	193	Crystal Structure Of Nucleosome Assembly Protein S		1e-25
3hfd_A	276	Nucleosome Assembly Protein 1 From Plasmodium Knowl		4e-11
3gyv_A	249	Crystal Structure Of Nucleosome Assembly Protein Fr		6e-11
3fs3_A	359	Crystal Structure Of Malaria Parasite Nucleosome As		8e-11
2ayu_A	417	The Structure Of Nucleosome Assembly Protein Sugges		4e-09
2z2r_A	292	Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng		4e-09
3c9b_A	259	Crystal Structure Of Semet Vps75 Length = 259		8e-04

>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 142/224 (63%), Gaps = 11/224 (4%)
Query: 1   MVADRGKKSKVAEDENADGID----TELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKY 56
           M A   K SK   + N DG D     E   +IE + EVQ+E++++NE+AS+++L++EQKY
Sbjct: 1   MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKY 60
Query: 57  NEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKS 116
           N++R+P + KR+E+I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KS
Sbjct: 61  NKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKS 120
Query: 117 GYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEG--MGSTNGINHEKNGNK 174
           GY I F F+ENP+FEN  LSK F   + G      T IKWK G  M   +     K   K
Sbjct: 121 GYRIDFYFDENPYFENKVLSKEFHMNESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRK 180
Query: 175 RPLAE-ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
           R   E ESFF+WF  T+  D     DE+ E+IK+D+WPNPL+Y+
Sbjct: 181 RQHEEPESFFTWF--TDHSDAG--ADELGEVIKDDIWPNPLQYY 220

>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S (Pfnaps) Plasmodium Falciparum Length = 193

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 28  IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPV 87
           ++  +++Q ++E+++ + + + + I+++Y+E ++P++ KR+EII+ IP FW N    HP 
Sbjct: 2   MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61
Query: 88  LCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPH--FENTKLSKTFTFLDEG 145
           L D++  ED  I  ++  LD++D  D    Y ITFIF E      E   L K  TF +  
Sbjct: 62  LSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQ 120
Query: 146 TTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEII 205
              +  T IKWKEG      + H ++     + + S F WF   E +D    + +V E+I
Sbjct: 121 EKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQD----KPDVGELI 176
Query: 206 KEDLWPNPLKYF 217
           + ++W NPL Y+
Sbjct: 177 RREIWHNPLSYY 188

>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 45/249 (18%)
Query: 14  DENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII-- 71
           DE    +  E   +++KL+  Q E      +   ++  + QKY+++  P+Y+KR E +  
Sbjct: 7   DEKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVG 66
Query: 72  --------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD---VEDFKDVKSGYCI 120
                    ++P+FWL A  ++  +  ++ + D++I  Y+N +    ++  K+ K G+ +
Sbjct: 67  NGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFIL 126
Query: 121 TFIFNENPHFENTKLSKTFTF--LDEGTTKIT----GTVIKW--KEGMGSTNGINHEKNG 172
           +F F  NP F N+ L+KT+    +D     +      TVI W   + +   N +  + N 
Sbjct: 127 SFHFAPNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNK 186
Query: 173 NKR-------PLAEESFFSWFA----------------ETEQKDF-VELQDEVAEIIKED 208
           N R        +  +SFF +F                 E  Q +  +E   EVA  IKE 
Sbjct: 187 NSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKER 246
Query: 209 LWPNPLKYF 217
           + P  + YF
Sbjct: 247 IIPYAVDYF 255

>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 45/236 (19%)
Query: 27  SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII----------KSIPD 76
           +++KL+  Q E      +   ++  + QKY+++  P+Y+KR E +           ++P+
Sbjct: 10  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 69
Query: 77  FWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD---VEDFKDVKSGYCITFIFNENPHFENT 133
           FWL A  ++  +  ++ + D++I  Y+N +    ++  K+ K G+ ++F F  NP F N+
Sbjct: 70  FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 129
Query: 134 KLSKTFTF--LDEGTTKIT----GTVIKW--KEGMGSTNGINHEKNGNKR-------PLA 178
            L+KT+    +D     +      TVI W   + +   N +  + N N R        + 
Sbjct: 130 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 189
Query: 179 EESFFSWFA----------------ETEQKDF-VELQDEVAEIIKEDLWPNPLKYF 217
            +SFF +F                 E  Q +  +E   EVA  IKE + P  + Y+
Sbjct: 190 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYY 245

>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 45/236 (19%)
Query: 27  SIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII----------KSIPD 76
           +++KL+  Q E      +   ++  + QKY+++  P+Y+KR E +           ++P+
Sbjct: 54  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 113
Query: 77  FWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD---VEDFKDVKSGYCITFIFNENPHFENT 133
           FWL A  ++  +  ++ + D++I  Y+N +    ++  K+ K G+ ++F F  NP F N+
Sbjct: 114 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 173
Query: 134 KLSKTFTF--LDEGTTKIT----GTVIKW--KEGMGSTNGINHEKNGNKR-------PLA 178
            L+KT+    +D     +      TVI W   + +   N +  + N N R        + 
Sbjct: 174 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 233
Query: 179 EESFFSWFA----------------ETEQKDF-VELQDEVAEIIKEDLWPNPLKYF 217
            +SFF +F                 E  Q +  +E   EVA  IKE + P  + Y+
Sbjct: 234 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYY 289

>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 69  EIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNE-- 126
           E +K IP FWL A  + P++CD + + D ++ +Y+  + +E   D + G+ + F F+   
Sbjct: 180 EQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSA 239
Query: 127 NPHFENTKLSKTFTFLDE 144
           NP F N  L KT+ +  E
Sbjct: 240 NPFFTNDILCKTYFYQKE 257

>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 45/159 (28%)
Query: 31  LQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII------------------- 71
           L+ +Q EL +V +E   ++ E+E K+ +  +P++ +R+ II                   
Sbjct: 26  LKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVE 85
Query: 72  ------------------------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD 107
                                   K IP FWL A  + P++CD + + D ++ +Y+  + 
Sbjct: 86  SLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIG 145
Query: 108 VEDFKDVKSGYCITFIFNE--NPHFENTKLSKTFTFLDE 144
           +E   D + G+ + F F+   NP F N  L KT+ +  E
Sbjct: 146 LEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKE 184

>pdb|3C9B|A Chain A, Crystal Structure Of Semet Vps75 Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 38  LEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQ 97
           L K  EE      E+E       +PVY KR+  I  I +FW      H    + +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASD- 76
Query: 98  KIFKYMNSLD--------VEDFKDVKSGYCITFIFNE-NPHFENTKLSKTFTF------L 142
             FKY++++D        +E        + ITF F+     F+  +++K F         
Sbjct: 77  --FKYIDTIDKIKVEWLALESEXYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQ 134
Query: 143 DEGTTKITGTVIKWKEGMGSTNG--INHEKN--GNKR-PLAEESFFSWFAETEQKDFVEL 197
           ++G        I+W +   S N   I  +++  G K+     ++ F WF  T  K   E 
Sbjct: 135 EDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGXKTIFGWFRWTGLKPGKEF 194
Query: 198 Q--DEVAEIIKEDLWPNPLKYF 217
              D +A +  E+++P  +KY+
Sbjct: 195 PHGDSLASLFSEEIYPFCVKYY 216

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	3e-56
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	3e-52
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	4e-45
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	8e-36
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	5e-34

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225

 Score =  178 bits (453), Expect = 3e-56
 Identities = 92/228 (40%), Positives = 138/228 (60%), Gaps = 11/228 (4%)

Query: 1   MVADRGKKSKVAEDENADGIDTEL----VLSIEKLQEVQDELEKVNEEASDKVLEIEQKY 56
           M A   K SK   + N DG D         +IE + EVQ+E++++NE+AS+++L++EQKY
Sbjct: 1   MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKY 60

Query: 57  NEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKS 116
           N++R+P + KR+E+I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KS
Sbjct: 61  NKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKS 120

Query: 117 GYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKR- 175
           GY I F F+ENP+FEN  LSK F   + G      T IKWK G   T   +  +N   R 
Sbjct: 121 GYRIDFYFDENPYFENKVLSKEFHMNESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRK 180

Query: 176 --PLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEA 221
                 ESFF+WF +          DE+ E+IK+D+WPNPL+Y+    
Sbjct: 181 RQHEEPESFFTWFTDHS----DAGADELGEVIKDDIWPNPLQYYLVPD 224

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193

 Score =  167 bits (423), Expect = 3e-52
 Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 7/196 (3%)

Query: 28  IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPV 87
           ++  +++Q ++E+++ + + + + I+++Y+E ++P++ KR+EII+ IP FW N    HP 
Sbjct: 2   MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61

Query: 88  LCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIF--NENPHFENTKLSKTFTFLDEG 145
           L D++  ED  I  ++  LD++D  D    Y ITFIF        E   L K  TF +  
Sbjct: 62  LSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQ 120

Query: 146 TTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSWFAETEQKDFVELQDEVAEII 205
              +  T IKWKEG      + H ++     + + S F WF   E +D      +V E+I
Sbjct: 121 EKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQDK----PDVGELI 176

Query: 206 KEDLWPNPLKYFNNEA 221
           + ++W NPL Y+    
Sbjct: 177 RREIWHNPLSYYLGLE 192

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score =  151 bits (382), Expect = 4e-45
 Identities = 48/241 (19%), Positives = 89/241 (36%), Gaps = 26/241 (10%)

Query: 21  DTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLN 80
           + E   +   L + ++E++ +  E        E       +PVY KR+  I  I +FW  
Sbjct: 8   ENEHAKAFLGLAKCEEEVDAIEREV-------ELYRLNKMKPVYEKRDAYIDEIAEFWKI 60

Query: 81  AFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKS-----GYCITFIFNE-NPHFENTK 134
               H    + +   D K    ++ + VE             + ITF F+     F+  +
Sbjct: 61  VLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQ 120

Query: 135 LSKTFTFLDE------GTTKITGTVIKWKEGMGSTNGINHEKNGN-----KRPLAEESFF 183
           ++K F           G        I+W +   S N    +   +     K     ++ F
Sbjct: 121 VTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMKTIF 180

Query: 184 SWFAETEQKDFVEL--QDEVAEIIKEDLWPNPLKYFNNEAGEEESDGDDEENGENGDGDE 241
            WF  T  K   E    D +A +  E+++P  +KY+     + E +  +     +GD ++
Sbjct: 181 GWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQRDLEDEEGESGLSADGDSED 240

Query: 242 D 242
           D
Sbjct: 241 D 241

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score =  130 bits (327), Expect = 8e-36
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 32/247 (12%)

Query: 28  IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPV 87
           I   ++ + E     +E  + + E E   +E  +   +   E +K IP FWL A  + P+
Sbjct: 139 ISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPI 198

Query: 88  LCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFI--FNENPHFENTKLSKTFTFLDEG 145
           +CD + + D ++ +Y+  + +E   D + G+ + F    + NP F N  L KT+ +  E 
Sbjct: 199 VCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKEL 258

Query: 146 T-------TKITGTVIKWKEGMGST----------NGINHEKNGNKRPLAEESFFSWFA- 187
                       G  I WK+   +           N    +    ++    ESFF++F  
Sbjct: 259 GYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDP 318

Query: 188 ------------ETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEAGEEESDGDDEENGE 235
                       E + ++ + L   + E +K+ L P  + +F   A E E + D+EE  E
Sbjct: 319 PKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFEEDEEEADE 378

Query: 236 NGDGDED 242
           + D +ED
Sbjct: 379 DEDEEED 385

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score =  124 bits (312), Expect = 5e-34
 Identities = 59/285 (20%), Positives = 112/285 (39%), Gaps = 45/285 (15%)

Query: 3   ADRGKKSKVAEDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRP 62
                +     D+    +  E   +++KL+  Q E      +   ++  + QKY+++  P
Sbjct: 30  TSLKYRCFYLYDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGP 89

Query: 63  VYNKRNEII----------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVE--- 109
           +Y+KR E +           ++P+FWL A  ++  +  ++ + D++I  Y+N +  +   
Sbjct: 90  IYDKRREALVGNGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIK 149

Query: 110 DFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGT------TKITGTVIKWKEGMGST 163
             K+ K G+ ++F F  NP F N+ L+KT+                  TVI W +     
Sbjct: 150 KNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNIL 209

Query: 164 NGINHEKNGNKR---------PLAEESFFSWF-----------------AETEQKDFVEL 197
                +K  NK           +  +SFF +F                    + +  +E 
Sbjct: 210 KKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEG 269

Query: 198 QDEVAEIIKEDLWPNPLKYFNNEAGEEESDGDDEENGENGDGDED 242
             EVA  IKE + P  + Y+     E ES+    +   +    E+
Sbjct: 270 DYEVALTIKERIIPYAVDYYLGIIIESESNSIVSDVDSSYSSSEN 314

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	100.0
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	100.0
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	100.0
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	100.0
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	100.0
2jo8_A	51	Serine/threonine-protein kinase 4; C-terminal doma	94.59
2p2u_A	171	HOST-nuclease inhibitor protein GAM, putative; str	89.84

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1

Probab=100.00  E-value=8.4e-62  Score=419.85  Aligned_cols=215  Identities=41%  Similarity=0.794  Sum_probs=174.8

Q ss_pred             CCCCcccccccccc----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcc
Q 026031            1 MVADRGKKSKVAED----ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPD   76 (244)
Q Consensus         1 ~~~~~~~~~~~~~~----~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~   76 (244)
                      |++|++||+|+++.    .+...++++++.+|.+|+.||.+++.|++++++++++|+++|+++++|+|++|++||++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~   80 (225)
T 2e50_A            1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (225)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence            88999999999744    25778899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEEeecCCCceeeecceeec
Q 026031           77 FWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKW  156 (244)
Q Consensus        77 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~g~~~~~~t~I~W  156 (244)
                      ||++||+||+.++.+|++.|++||+||+||+|++..++..||+|+|+|++||||+|++|||+|++..+|.+++++|+|+|
T Consensus        81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g~~~s~~t~I~W  160 (225)
T 2e50_A           81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDPSSKSTEIKW  160 (225)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-------CEEECCCCB
T ss_pred             HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCCCcccCCCccee
Confidence            99999999999999999999999999999999999887899999999999999999999999999988888899999999


Q ss_pred             cCCCCCCccccccc--CCCCccc-cccccccccccccccccccchHHHHHHHHhccccchhhhhcc
Q 026031          157 KEGMGSTNGINHEK--NGNKRPL-AEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNN  219 (244)
Q Consensus       157 k~gk~~t~~~~~~k--~~~~r~~-~~~SFF~~F~~~~~~~~~~~~~ei~~~i~dei~p~al~yy~g  219 (244)
                      |+|+++|++..+++  +|++|.. +..|||+||+++..+    ..++||++|+++|||+||+||+.
T Consensus       161 k~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~----~~~eige~ikd~i~P~av~yy~~  222 (225)
T 2e50_A          161 KSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA----GADELGEVIKDDIWPNPLQYYLV  222 (225)
T ss_dssp             CSSCCC----------------------CGGGGC----------CHHHHHHHHHTTTTCSHHHHCC
T ss_pred             cCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCC----chhHHHHHHHhCccccHHHHhcC
Confidence            99999998765443  2444443 468999999988765    35899999999999999999984

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A

Probab=100.00  E-value=7.4e-60  Score=437.73  Aligned_cols=208  Identities=29%  Similarity=0.575  Sum_probs=183.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhh-----------------------
Q 026031           15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII-----------------------   71 (244)
Q Consensus        15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI-----------------------   71 (244)
                      .++.+||+.|+++|.+|+.||.++..|+++|++++++|+++|.++++|||++|++||                       
T Consensus        83 ~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ept~eE~~~~~~~~~~~~~  162 (417)
T 2ayu_A           83 GYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNE  162 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHTTC
T ss_pred             chhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhcccccccchhhh
Confidence            357789999999999999999999999999999999999999999999999999998                       


Q ss_pred             --------------------ccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEe--ccCCC
Q 026031           72 --------------------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIF--NENPH  129 (244)
Q Consensus        72 --------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F--~~Npy  129 (244)
                                          ++||+||++||+||+.|+.+|+++|++||+||+||+|++..++..||+|+|+|  .+|||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~NpY  242 (417)
T 2ayu_A          163 TELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPF  242 (417)
T ss_dssp             GGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSS
T ss_pred             hhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCcc
Confidence                                58999999999999999999999999999999999999988768899999999  99999


Q ss_pred             cccceEEEEEeecCC----Cce---eeecceeeccC-CCCCCcccccccCCC-----Ccc----cccccccccccccccc
Q 026031          130 FENTKLSKTFTFLDE----GTT---KITGTVIKWKE-GMGSTNGINHEKNGN-----KRP----LAEESFFSWFAETEQK  192 (244)
Q Consensus       130 F~N~~L~K~~~~~~~----g~~---~~~~t~I~Wk~-gk~~t~~~~~~k~~~-----~r~----~~~~SFF~~F~~~~~~  192 (244)
                      |+|++|||+|++...    |+.   .+++|+|+||+ |+++|++..++|+++     .|+    ++..|||+||+++..+
T Consensus       243 F~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~~p  322 (417)
T 2ayu_A          243 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQ  322 (417)
T ss_dssp             BCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCSC
T ss_pred             ccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCCCC
Confidence            999999999999743    443   47999999999 999998876554332     233    3568999999987654


Q ss_pred             ccc-------------cchHHHHHHHHhccccchhhhhccccC
Q 026031          193 DFV-------------ELQDEVAEIIKEDLWPNPLKYFNNEAG  222 (244)
Q Consensus       193 ~~~-------------~~~~ei~~~i~dei~p~al~yy~g~~~  222 (244)
                      +..             +.+++||++|+++|||+||.||+|++.
T Consensus       323 ~~dede~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~  365 (417)
T 2ayu_A          323 NEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAAL  365 (417)
T ss_dssp             CCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHH
T ss_pred             CccccccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccc
Confidence            321             256799999999999999999999744

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A

Probab=100.00  E-value=1.1e-58  Score=420.52  Aligned_cols=219  Identities=26%  Similarity=0.480  Sum_probs=171.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhc----------cCcchhhHHhhh
Q 026031           15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIK----------SIPDFWLNAFLS   84 (244)
Q Consensus        15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~----------~IP~FW~~vl~n   84 (244)
                      +++..||+.|+++|.+|+.||.++..+++++++++++|++||+++++|+|++|++||.          +||+||++||+|
T Consensus        42 ~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G~~e~e~~~kgIP~FWltvl~N  121 (359)
T 3fs3_A           42 DKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRALRN  121 (359)
T ss_dssp             ---CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSSSTTSTTHHHHHHHT
T ss_pred             hhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccccccccCCCCcHHHHHHHh
Confidence            5689999999999999999999999999999999999999999999999999999998          899999999999


Q ss_pred             chhhhcccCcchHHhhcCcceeEEEEcc---CCCcCeEEEEEeccCCCcccceEEEEEeecCC---Cc---eeeecceee
Q 026031           85 HPVLCDLLNEEDQKIFKYMNSLDVEDFK---DVKSGYCITFIFNENPHFENTKLSKTFTFLDE---GT---TKITGTVIK  155 (244)
Q Consensus        85 ~~~l~~~i~~~D~~iL~~L~dI~Ve~~~---d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~---g~---~~~~~t~I~  155 (244)
                      |++++.+|++.|+++|+||+||+|+++.   +.+++|+|+|+|++||||+|++|+|+|++...   |.   ..+++|+|+
T Consensus       122 hp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~I~  201 (359)
T 3fs3_A          122 NNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVID  201 (359)
T ss_dssp             SHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC--------CEEEEEECCCC
T ss_pred             chHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCCCcccccceeeeee
Confidence            9999999999999999999999999863   45899999999999999999999999999743   22   247999999


Q ss_pred             ccCCCCCCcccccccCCCC-----c----ccccccccccccccccccc-----------------ccchHHHHHHHHhcc
Q 026031          156 WKEGMGSTNGINHEKNGNK-----R----PLAEESFFSWFAETEQKDF-----------------VELQDEVAEIIKEDL  209 (244)
Q Consensus       156 Wk~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~-----------------~~~~~ei~~~i~dei  209 (244)
                      ||+||++|++..++|++++     |    ..+..|||+||+++.++..                 ++.+++||++|+++|
T Consensus       202 WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd~I  281 (359)
T 3fs3_A          202 WYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERI  281 (359)
T ss_dssp             BCTTCCTTCC----------------------CCCGGGGSCCBCC------------CHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             EeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHhce
Confidence            9999999988765443322     2    2467899999999876532                 124688999999999


Q ss_pred             ccchhhhhccccCCCCCCCCCCCC
Q 026031          210 WPNPLKYFNNEAGEEESDGDDEEN  233 (244)
Q Consensus       210 ~p~al~yy~g~~~~e~~~~~~~~~  233 (244)
                      ||+||+||+|++.++++++-+.+.
T Consensus       282 iP~av~yftGea~e~e~~~~~~d~  305 (359)
T 3fs3_A          282 IPYAVDYYLGIIIESESNSIVSDV  305 (359)
T ss_dssp             HHHHHHHHTTCC------------
T ss_pred             ecChHHhhCCcccccccCCccccc
Confidence            999999999998877765554443

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}

Probab=100.00  E-value=1.7e-57  Score=384.92  Aligned_cols=189  Identities=32%  Similarity=0.672  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhchhhhcccCcchHHhhcCcceeE
Q 026031           28 IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLD  107 (244)
Q Consensus        28 i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~  107 (244)
                      +.+|+.||.+++.+++++++++++|+++|+++++|+|++|++||++||+||++||+|||+++.++ +.|+++|+||+||+
T Consensus         2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~   80 (193)
T 3kyp_A            2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLD   80 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEE
Confidence            57899999999999999999999999999999999999999999999999999999999999865 79999999999999


Q ss_pred             EEEccCCCcCeEEEEEecc--CCCcccceEEEEEeecCCCceeeecceeeccCCCCCCcccccccCCCCccccccccccc
Q 026031          108 VEDFKDVKSGYCITFIFNE--NPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRPLAEESFFSW  185 (244)
Q Consensus       108 Ve~~~d~~~~f~l~F~F~~--NpyF~N~~L~K~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~~  185 (244)
                      |++..+++.||+|+|+|++  ||||+|++|+|+|++..+|..++++|+|+||+|+++|++..++++...+..+..|||+|
T Consensus        81 v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~w  160 (193)
T 3kyp_A           81 LKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEW  160 (193)
T ss_dssp             CBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC----CCCCCCCCCCCSSCCCCC--------------CCCTTTT
T ss_pred             EEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcCCCCeeeccceeeeecCCCcchhhhhccccccccCCcchHhhh
Confidence            9988777899999999998  89999999999999998888889999999999999997654443322334567899999


Q ss_pred             cccccccccccchHHHHHHHHhccccchhhhhcccc
Q 026031          186 FAETEQKDFVELQDEVAEIIKEDLWPNPLKYFNNEA  221 (244)
Q Consensus       186 F~~~~~~~~~~~~~ei~~~i~dei~p~al~yy~g~~  221 (244)
                      |+++.++    .+++||++|+++||||||+||+|+.
T Consensus       161 F~~~~~~----~~~eige~ikd~i~P~~l~yy~ge~  192 (193)
T 3kyp_A          161 FTTDELQ----DKPDVGELIRREIWHNPLSYYLGLE  192 (193)
T ss_dssp             CCSSCCT----TTTCTTHHHHTTTTTCHHHHHC---
T ss_pred             cCCCCcC----CchHHHHHHHhCeeeCHHHHhCCCC
Confidence            9998765    5788999999999999999999964

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A

Probab=100.00  E-value=4.4e-56  Score=392.49  Aligned_cols=196  Identities=22%  Similarity=0.386  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEE
Q 026031           29 EKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDV  108 (244)
Q Consensus        29 ~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~V  108 (244)
                      .+|..++.++..++.++.++.++++++|.++++|+|++|++||++||+||++||+|||.|+.+|++.|++||+||++|+|
T Consensus         9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v   88 (264)
T 2zd7_A            9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKV   88 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEE
Confidence            34666677777777777777788999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEc-----cCCCcCeEEEEEecc-CCCcccceEEEEEeecCC--C--c--eeeecceeeccCCCCCC-cccccccC---C
Q 026031          109 EDF-----KDVKSGYCITFIFNE-NPHFENTKLSKTFTFLDE--G--T--TKITGTVIKWKEGMGST-NGINHEKN---G  172 (244)
Q Consensus       109 e~~-----~d~~~~f~l~F~F~~-NpyF~N~~L~K~~~~~~~--g--~--~~~~~t~I~Wk~gk~~t-~~~~~~k~---~  172 (244)
                      +++     .+.++||+|+|+|++ ||||+|++|||+|++..+  |  .  .++++|+|+||+|++++ .+..++|+   |
T Consensus        89 ~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~  168 (264)
T 2zd7_A           89 EWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEG  168 (264)
T ss_dssp             EEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHH
T ss_pred             EEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecccccCCCccccchhhhhhcccccc
Confidence            996     566899999999999 999999999999999764  3  2  67899999999987654 33332221   1


Q ss_pred             CCc-ccccccccccccccccccc--ccchHHHHHHHHhccccchhhhhccccCCC
Q 026031          173 NKR-PLAEESFFSWFAETEQKDF--VELQDEVAEIIKEDLWPNPLKYFNNEAGEE  224 (244)
Q Consensus       173 ~~r-~~~~~SFF~~F~~~~~~~~--~~~~~ei~~~i~dei~p~al~yy~g~~~~e  224 (244)
                      .++ .....|||+||+++..+++  ...+++||++|+++|||+||+||+|.+.+.
T Consensus       169 ~~~~r~~~~SFF~fF~~~~~~~~~~~~~d~eig~~Ikd~I~P~al~yf~g~~~d~  223 (264)
T 2zd7_A          169 KKKYRQGMKTIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQRDL  223 (264)
T ss_dssp             HHHHHHHHTSHHHHTTCCSSSTTSSSTTHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred             ccccCCCCCCcceecCCCCCCccccccCchhHHHHHHhhhccCHHHHhccccccc
Confidence            111 1244799999998865432  236899999999999999999999976654

>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}

Probab=94.59  E-value=0.083  Score=34.38  Aligned_cols=36  Identities=25%  Similarity=0.510  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026031           31 LQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNK   66 (244)
Q Consensus        31 L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~k   66 (244)
                      +..|+..+..|+.++++|+-++.+.|..+++|+.+.
T Consensus        12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldA   47 (51)
T 2jo8_A           12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDA   47 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHH
Confidence            456788889999999999999999999999999864

>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1

Probab=89.84  E-value=0.76  Score=37.19  Aligned_cols=57  Identities=7%  Similarity=0.264  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcch
Q 026031           21 DTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPDF   77 (244)
Q Consensus        21 ~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~F   77 (244)
                      -.++-.++..+..|+.++..++..+..++.++...|....+|+-.+...+-..|-.|
T Consensus        15 ~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y   71 (171)
T 2p2u_A           15 IRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF   71 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345889999999999999999999999999999999999999998887777766655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d2e50a1	222	d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie	2e-62
d2ayua1	301	d.305.1.1 (A:70-370) Nucleosome assembly protein,	3e-39

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  192 bits (490), Expect = 2e-62
 Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 11/224 (4%)

Query: 1   MVADRGKKSKVAEDENADGID----TELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKY 56
           M A   K SK   + N DG D     E   +IE + EVQ+E++++NE+AS+++L++EQKY
Sbjct: 1   MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKY 60

Query: 57  NEIRRPVYNKRNEIIKSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKS 116
           N++R+P + KR+E+I  IP+FW+  F++HP +  LL EED++   Y+  ++V +F+D+KS
Sbjct: 61  NKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKS 120

Query: 117 GYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKWKEGMGSTNGINHEKNGNKRP 176
           GY I F F+ENP+FEN  LSK F   + G      T IKWK G   T   +  +N   R 
Sbjct: 121 GYRIDFYFDENPYFENKVLSKEFHMNESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRK 180

Query: 177 LAE---ESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYF 217
                 ESFF+WF +          DE+ E+IK+D+WPNPL+Y+
Sbjct: 181 RQHEEPESFFTWFTDHSDAG----ADELGEVIKDDIWPNPLQYY 220

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  135 bits (342), Expect = 3e-39
 Identities = 58/275 (21%), Positives = 107/275 (38%), Gaps = 75/275 (27%)

Query: 28  IEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII---------------- 71
           +  L+ +Q EL +V +E   ++ E+E K+ +  +P++ +R+ II                
Sbjct: 27  LLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQE 86

Query: 72  ---------------------------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMN 104
                                      K IP FWL A  + P++CD + + D ++ +Y+ 
Sbjct: 87  IVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQ 146

Query: 105 SLDVEDFKDVKSGYCITFIFN--ENPHFENTKLSKTFTFLDEGTT-------KITGTVIK 155
            + +E   D + G+ + F F+   NP F N  L KT+ +  E             G  I 
Sbjct: 147 DIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEIS 206

Query: 156 WKEGMGST----------NGINHEKNGNKRPLAEESFFSWF-------------AETEQK 192
           WK+   +           N    +    ++    ESFF++F              E + +
Sbjct: 207 WKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLE 266

Query: 193 DFVELQDEVAEIIKEDLWPNPLKYFNNEAGEEESD 227
           + + L   + E +K+ L P  + +F   A E E +
Sbjct: 267 ERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFE 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d2e50a1	222	Protein SET {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ayua1	301	Nucleosome assembly protein, NAP {Baker's yeast (S	100.0

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-60  Score=405.37  Aligned_cols=214  Identities=42%  Similarity=0.804  Sum_probs=170.7

Q ss_pred             CCCCcccccccc----ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhhccCcc
Q 026031            1 MVADRGKKSKVA----EDENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEIIKSIPD   76 (244)
Q Consensus         1 ~~~~~~~~~~~~----~~~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~   76 (244)
                      ||+|++|..+..    .......++.+++.+|.+|+.||.++..++.++++++++|+++|.++++|+|++|++||++||+
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R~~iI~gIP~   80 (222)
T d2e50a1           1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (222)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCccccccchhcccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc
Confidence            788777666553    2256888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEeccCCCcccceEEEEEeecCCCceeeecceeec
Q 026031           77 FWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIFNENPHFENTKLSKTFTFLDEGTTKITGTVIKW  156 (244)
Q Consensus        77 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~g~~~~~~t~I~W  156 (244)
                      ||++||+||+.++.+|++.|+++|+||+||+|++.+++..+|+|+|+|++||||+|++|+|+|++..+|.+++++|+|+|
T Consensus        81 FW~~~l~n~~~l~~~I~~~D~~~L~~L~dI~v~~~~~~~~~f~i~F~F~~N~yF~N~~L~K~y~~~~~~~~~~~~t~I~W  160 (222)
T d2e50a1          81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDPSSKSTEIKW  160 (222)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-------CEEECCCCB
T ss_pred             HHHHHHHcCcchhhhCCHHHHHHHHhhhheeeeeccCCCCceEEEEEeCCCCcccCCeEEEEEEecCCCCccccccccee
Confidence            99999999999999999999999999999999999888899999999999999999999999999998988999999999


Q ss_pred             cCCCCCCcccccccCCC---CccccccccccccccccccccccchHHHHHHHHhccccchhhhhc
Q 026031          157 KEGMGSTNGINHEKNGN---KRPLAEESFFSWFAETEQKDFVELQDEVAEIIKEDLWPNPLKYFN  218 (244)
Q Consensus       157 k~gk~~t~~~~~~k~~~---~r~~~~~SFF~~F~~~~~~~~~~~~~ei~~~i~dei~p~al~yy~  218 (244)
                      |+|+++|++..+++++.   .......|||+||+++..+    ...+||++|+++|||+||.||+
T Consensus       161 k~gkd~t~k~~~~~~~~~~~~~~~~~~SFFnfF~~~~~~----~~deI~~~i~d~i~p~av~yyL  221 (222)
T d2e50a1         161 KSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA----GADELGEVIKDDIWPNPLQYYL  221 (222)
T ss_dssp             CSSCCC----------------------CGGGGC----------CHHHHHHHHHTTTTCSHHHHC
T ss_pred             cCCCccccccccccccCccccccCCCCChhhcCCCCCCC----CchHHHHHHHhhhchhhhHhhc
Confidence            99999998765543321   1234568999999988755    4568999999999999999997

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-56  Score=394.91  Aligned_cols=211  Identities=29%  Similarity=0.583  Sum_probs=182.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhhh-----------------------
Q 026031           15 ENADGIDTELVLSIEKLQEVQDELEKVNEEASDKVLEIEQKYNEIRRPVYNKRNEII-----------------------   71 (244)
Q Consensus        15 ~~~~~~~~~v~~~i~~L~~lq~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI-----------------------   71 (244)
                      .++..||+.|+++|.+|+.||.+..+|+.++++++++|+++|.++++|+|++|++||                       
T Consensus        14 ~~i~~Lp~~v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II~G~~ept~eE~~~~~~~~e~~~~   93 (301)
T d2ayua1          14 GYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNE   93 (301)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHTTC
T ss_pred             chHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHCCCCCCCHHHhhcccccccccch
Confidence            468889999999999999999999999999999999999999999999999999999                       


Q ss_pred             --------------------ccCcchhhHHhhhchhhhcccCcchHHhhcCcceeEEEEccCCCcCeEEEEEe--ccCCC
Q 026031           72 --------------------KSIPDFWLNAFLSHPVLCDLLNEEDQKIFKYMNSLDVEDFKDVKSGYCITFIF--NENPH  129 (244)
Q Consensus        72 --------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F--~~Npy  129 (244)
                                          ++||+||++||+||+.|+.+|++.|+++|+||+||+|++..++..||+|+|+|  +||||
T Consensus        94 ~e~~~~~~~~~~~~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf~l~F~F~f~~N~y  173 (301)
T d2ayua1          94 TELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPF  173 (301)
T ss_dssp             GGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSS
T ss_pred             hhhhhhhhhhhccccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCceEEEEEecCCCCC
Confidence                                48999999999999999999999999999999999999988878899999999  68999


Q ss_pred             cccceEEEEEeecCC----Cc---eeeecceeeccC-CCCCCcccccccCCC-----Ccc----cccccccccccccccc
Q 026031          130 FENTKLSKTFTFLDE----GT---TKITGTVIKWKE-GMGSTNGINHEKNGN-----KRP----LAEESFFSWFAETEQK  192 (244)
Q Consensus       130 F~N~~L~K~~~~~~~----g~---~~~~~t~I~Wk~-gk~~t~~~~~~k~~~-----~r~----~~~~SFF~~F~~~~~~  192 (244)
                      |+|++|+|+|++...    ++   ..+++|+|+||+ |+++|++...+|+++     .|+    .+..|||+||+++..+
T Consensus       174 F~N~vLtK~y~~~~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~~SFF~fF~~~~~~  253 (301)
T d2ayua1         174 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQ  253 (301)
T ss_dssp             BCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCSC
T ss_pred             CCCCeEEEEEEEecCCCCCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCCCCCCcCCCCCCCC
Confidence            999999999999653    22   347999999999 678887665443322     222    3567999999987654


Q ss_pred             cc-------------ccchHHHHHHHHhccccchhhhhccccCCCC
Q 026031          193 DF-------------VELQDEVAEIIKEDLWPNPLKYFNNEAGEEE  225 (244)
Q Consensus       193 ~~-------------~~~~~ei~~~i~dei~p~al~yy~g~~~~e~  225 (244)
                      +.             ++.+++||..|+++|||+||.||||+|.+++
T Consensus       254 ~~~~~~~~~e~~~~~l~~D~eig~~i~d~iiP~Av~yytGea~~~~  299 (301)
T d2ayua1         254 NEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFE  299 (301)
T ss_dssp             CCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHH
T ss_pred             CccccchhhHHHHHHHhhhHHHHHHHHhcccccHHHhhCchhhhcc
Confidence            32             2367799999999999999999999987653