Citrus Sinensis ID: 026045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD
Secondary Structure (PSIPRED)
ccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccHHcccc
Coil and Loop (DISEMBL)
MAQAVEDWYKQMPIITRTYLTAAIVTTVGCsldiispfnlclhptLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLeensfrgrTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSkqnpfihmSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFledvyprmtgrrplktpsFIKALFADEAVvvarpanvrfapppaeevhqd
Flexible Loop (DISEMBL)
MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVrfapppaeevhqd
Low Complexity Region (SEG)
MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKmdldflfhmfflARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD
Disordered region (IsUnstruct)
****VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANV*************
Disordered Region (DISOPRED)
**QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAV*********************
Disordered Region (DISEMBL)
MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAP*********
Disordered Region (DISPRO)
*AQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADE***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9ZS88	244	Derlin-2.2 OS=Arabidopsis	yes	no	1.0	1.0	0.864	1e-125
Q8VZ96	244	Derlin-2.1 OS=Arabidopsis	no	no	1.0	1.0	0.860	1e-122
Q851X7	249	Derlin-2 OS=Oryza sativa	yes	no	0.942	0.923	0.856	1e-116
Q4G2J3	249	Derlin-2.2 OS=Zea mays GN	N/A	no	0.942	0.923	0.852	1e-116
Q4G2J4	249	Derlin-2.1 OS=Zea mays GN	N/A	no	0.942	0.923	0.847	1e-115
Q54NN1	254	Probable derlin-2 homolog	yes	no	0.872	0.838	0.497	2e-58
Q5RC74	239	Derlin-2 OS=Pongo abelii	yes	no	0.840	0.857	0.502	4e-58
Q9GZP9	239	Derlin-2 OS=Homo sapiens	yes	no	0.840	0.857	0.502	4e-58
Q8BNI4	239	Derlin-2 OS=Mus musculus	yes	no	0.840	0.857	0.488	4e-57
Q0P5E4	231	Derlin-3 OS=Bos taurus GN	no	no	0.836	0.883	0.472	3e-48

>sp|Q9ZS88|DER22_ARATH Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1

 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/244 (86%), Positives = 230/244 (94%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMPIITR+YLTAA++TTVGCSLDIISP+NL L+PTLVVK YQ+WRL+TNF
Sbjct: 1   MAQAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDF+FHMFFLARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYL
Sbjct: 61  LYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           S SFAKIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW
Sbjct: 121 SASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGMIAGHAYYFL +VYPRMT RRPLKTPSF+KALFADE VVVARP +VRFA  P +E
Sbjct: 181 VDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRFAAAPFDE 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 IHQD 244

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ96|DER21_ARATH Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=3

 Score =  438 bits (1127), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/244 (86%), Positives = 227/244 (93%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMPIITR+YLTAA+VTTVGCSL+IISP+NL L+PTLVVK YQFWRL+TNF
Sbjct: 1   MAQAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRG+TADFLYMLLFGAT LTG VLIGGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           S SF+KIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW
Sbjct: 121 SVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
            D LGMIAGHAYYFL  VYPRMT RRPLKTPSF+KALFADE VV+ARP +VRFA  P +E
Sbjct: 181 GDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRFAHAPFDE 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 IHQD 244

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q851X7|DERL2_ORYSJ Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/230 (85%), Positives = 217/230 (94%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNF
Sbjct: 1   MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYI 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S W
Sbjct: 121 SETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 230
           VDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARP N
Sbjct: 181 VDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVARPPN 230

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4G2J3|DER22_MAIZE Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1

 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/230 (85%), Positives = 217/230 (94%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNF
Sbjct: 1   MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYI 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S W
Sbjct: 121 SETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 230
           VDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVA+P N
Sbjct: 181 VDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPN 230

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J4|DER21_MAIZE Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2

 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/230 (84%), Positives = 216/230 (93%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNF
Sbjct: 1   MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LT  VLIGGMIPY+
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYI 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S W
Sbjct: 121 SETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 230
           VDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVA+P N
Sbjct: 181 VDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPN 230

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q54NN1|DERL2_DICDI Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/217 (49%), Positives = 151/217 (69%), Gaps = 4/217 (1%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQ  EDWYK +PI+T+ Y+T  +VT+V   L ++ P  L L+  LV   Y+FWRL TNF
Sbjct: 1   MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
            F+ ++ ++F FHM+FL R+ +LLEE+SFRGR+AD+L+M +FG+  L    LI     + 
Sbjct: 61  FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLL----LIMDAFLFY 116

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           ++   K++FL+ S+  M++YVWS++NP +H+SFLGLFTF+A YLPWV+L           
Sbjct: 117 TKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLT 176

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKAL 217
            DLLG +AGHAYYFLED YP ++ RR LKTP F+K L
Sbjct: 177 TDLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNL 213

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5RC74|DERL2_PONAB Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1

 Score =  224 bits (572), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/217 (50%), Positives = 149/217 (68%), Gaps = 12/217 (5%)

Query: 3   QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLF 62
           Q++   Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLF
Sbjct: 4   QSLRLEYLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLF 63

Query: 63  FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSE 122
           F  +  +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T           L  
Sbjct: 64  FGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFG 112

Query: 123 SFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVD 182
            F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VD
Sbjct: 113 LFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVD 172

Query: 183 LLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
           LLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct: 173 LLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Pongo abelii (taxid: 9601)

>sp|Q9GZP9|DERL2_HUMAN Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1

 Score =  224 bits (572), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/217 (50%), Positives = 149/217 (68%), Gaps = 12/217 (5%)

Query: 3   QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLF 62
           Q++   Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLF
Sbjct: 4   QSLRLEYLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLF 63

Query: 63  FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSE 122
           F  +  +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T           L  
Sbjct: 64  FGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFG 112

Query: 123 SFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVD 182
            F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VD
Sbjct: 113 LFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVD 172

Query: 183 LLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
           LLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct: 173 LLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate. In contrast to DERL1, it is not involved in the degradation of MHC class I heavy chains following infection by cytomegaloviruses. May play a role in cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q8BNI4|DERL2_MOUSE Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2

 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 106/217 (48%), Positives = 148/217 (68%), Gaps = 12/217 (5%)

Query: 3   QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLF 62
           Q++   Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLF
Sbjct: 4   QSLRLEYLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLF 63

Query: 63  FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSE 122
           F  +  +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T           L  
Sbjct: 64  FGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFG 112

Query: 123 SFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVD 182
            F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VD
Sbjct: 113 LFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVD 172

Query: 183 LLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
           LLG+  GH Y+FLED++P   G  R LKTPS ++ +F
Sbjct: 173 LLGIAVGHIYFFLEDIFPNQPGGIRILKTPSILRTIF 209

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Mus musculus (taxid: 10090)

>sp|Q0P5E4|DERL3_BOVIN Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1

 Score =  191 bits (486), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/216 (47%), Positives = 140/216 (64%), Gaps = 12/216 (5%)

Query: 3   QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLF 62
           Q +   + Q+P +TRTY  A ++TT    L+++SPF L  +P LV + +Q WRLITNFLF
Sbjct: 4   QGLATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLF 63

Query: 63  FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSE 122
           F  +   F F+M F+ RYC++LEE SFRGRTADF++M LFG   +T   L+         
Sbjct: 64  FGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLL--------- 114

Query: 123 SFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVD 182
               + FL  +LT M+VYVWS+++P + ++F GL TF A +LPW L+G  + +G S  VD
Sbjct: 115 --GSLFFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVD 172

Query: 183 LLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKAL 217
           LLG+  GH YYFLEDV+P    G+R L TPSF+K L
Sbjct: 173 LLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLL 208

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
255554933	244	Derlin-2, putative [Ricinus communis] gi	1.0	1.0	0.930	1e-131
356555644	244	PREDICTED: derlin-2.2-like isoform 1 [Gl	1.0	1.0	0.909	1e-129
358248830	244	uncharacterized protein LOC100802618 [Gl	1.0	1.0	0.909	1e-129
388509296	244	unknown [Lotus japonicus]	1.0	1.0	0.885	1e-125
449433946	244	PREDICTED: derlin-2.2-like [Cucumis sati	1.0	1.0	0.889	1e-125
388497810	244	unknown [Medicago truncatula] gi|3885112	1.0	1.0	0.885	1e-125
224078644	244	predicted protein [Populus trichocarpa]	1.0	1.0	0.868	1e-125
449479441	244	PREDICTED: LOW QUALITY PROTEIN: derlin-2	1.0	1.0	0.885	1e-125
217075580	244	unknown [Medicago truncatula]	1.0	1.0	0.881	1e-124
224113613	243	predicted protein [Populus trichocarpa]	0.995	1.0	0.877	1e-124

>gi|255554933|ref|XP_002518504.1| Derlin-2, putative [Ricinus communis] gi|223542349|gb|EEF43891.1| Derlin-2, putative [Ricinus communis]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/244 (93%), Positives = 236/244 (96%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMPIITR+YLTAAIVTT+GCSL+IISP NL LHPTLVVK+YQFWRLITNF
Sbjct: 1   MAQAVEEWYKQMPIITRSYLTAAIVTTIGCSLEIISPHNLYLHPTLVVKNYQFWRLITNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDF+FHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPYL
Sbjct: 61  LYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGMIAGHAYYFLEDVYPRMTGRRPL+TPSFIK+LFADE VVVARPANVRFAPPPAEE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLRTPSFIKSLFADETVVVARPANVRFAPPPAEE 240

Query: 241 VHQD 244
           VHQD
Sbjct: 241 VHQD 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555644|ref|XP_003546140.1| PREDICTED: derlin-2.2-like isoform 1 [Glycine max]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/244 (90%), Positives = 235/244 (96%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMP+ITR+YLTAA+VTT+GCSLDIISP++L L+P LVVK YQFWRL+TNF
Sbjct: 1   MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARPANVRFAPPPAEE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADDPVVVARPANVRFAPPPAEE 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 LHQD 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248830|ref|NP_001239947.1| uncharacterized protein LOC100802618 [Glycine max] gi|255638233|gb|ACU19430.1| unknown [Glycine max]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/244 (90%), Positives = 235/244 (96%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMP+ITR+YLTAA+VTT+GCSLDIISP++L L+P LVVK YQFWRL+TNF
Sbjct: 1   MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPILVVKQYQFWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARPANVRFAPPPAEE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADDPVVVARPANVRFAPPPAEE 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 LHQD 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509296|gb|AFK42714.1| unknown [Lotus japonicus]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/244 (88%), Positives = 231/244 (94%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMP+ITR+YLTAA+VTT+GCSLDIISP++L L+P LVVK YQFWRL+TNF
Sbjct: 1   MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGA+ LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLLGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPS IKALFAD+ VVVARPANVRFA PP ++
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIKALFADDPVVVARPANVRFAAPPVDD 240

Query: 241 VHQD 244
            HQD
Sbjct: 241 RHQD 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433946|ref|XP_004134757.1| PREDICTED: derlin-2.2-like [Cucumis sativus]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/244 (88%), Positives = 230/244 (94%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMPIITR+YLTAAI TT+GCSLDIISP +L L+P LV K YQFWRLITNF
Sbjct: 1   MAQAVEEWYKQMPIITRSYLTAAIATTIGCSLDIISPHHLYLNPILVAKKYQFWRLITNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SES A++IFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESIAEVIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGM+AGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPA++RFA P AE+
Sbjct: 181 VDLLGMVAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPADLRFAAPAAED 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 IHQD 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497810|gb|AFK36971.1| unknown [Medicago truncatula] gi|388511275|gb|AFK43699.1| unknown [Medicago truncatula]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/244 (88%), Positives = 231/244 (94%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMP+ITR+YLTAA+VTT+GCSL+IISP++L L+P LVVK YQFWRL+TNF
Sbjct: 1   MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLEIISPYHLYLNPRLVVKQYQFWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGA+ LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLLGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPS IKALFAD+ VVVARPANVRFA P  EE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIKALFADDPVVVARPANVRFAAPQPEE 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 LHQD 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078644|ref|XP_002305588.1| predicted protein [Populus trichocarpa] gi|222848552|gb|EEE86099.1| predicted protein [Populus trichocarpa]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/244 (86%), Positives = 231/244 (94%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVEDWYKQMPIITR+Y+TAA+VTT+GCSLDIISP NL L+P LV+K+Y+FWRL+TNF
Sbjct: 1   MAQAVEDWYKQMPIITRSYVTAAVVTTIGCSLDIISPSNLYLNPRLVMKNYEFWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDF+FHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LT  V++GG IPYL
Sbjct: 61  LYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVIVGGNIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLG+FTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGIFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGM AGHAYYFLEDVYPRMTGRRPL+TP FIK++FADEAVVVARP N+RFAPPPAEE
Sbjct: 181 VDLLGMTAGHAYYFLEDVYPRMTGRRPLQTPGFIKSMFADEAVVVARPVNIRFAPPPAEE 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 LHQD 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479441|ref|XP_004155600.1| PREDICTED: LOW QUALITY PROTEIN: derlin-2.2-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/244 (88%), Positives = 229/244 (93%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMPIITR+YLTAAI TT+GCSLDIISP +L L+P LV K YQFWRLITNF
Sbjct: 1   MAQAVEEWYKQMPIITRSYLTAAIATTIGCSLDIISPHHLYLNPILVAKKYQFWRLITNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           LFFRKMDLDF FHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 61  LFFRKMDLDFXFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SES A++IFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESIAEVIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGM+AGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPA++RFA P AE+
Sbjct: 181 VDLLGMVAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPADLRFAAPAAED 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 IHQD 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075580|gb|ACJ86150.1| unknown [Medicago truncatula]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/244 (88%), Positives = 230/244 (94%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVE+WYKQMP+ITR+YLTAA+VTT+GCSL+IISP++L L+P LVVK YQFWRL+TNF
Sbjct: 1   MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLEIISPYHLYLNPRLVVKQYQFWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGA+ LTG VL GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLPGGMIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SESFAKIIFLSNSLT +MVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFVMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPS IKALFAD+ VVVARPANVRFA P  EE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIKALFADDPVVVARPANVRFAAPQPEE 240

Query: 241 VHQD 244
           +HQD
Sbjct: 241 LHQD 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113613|ref|XP_002316520.1| predicted protein [Populus trichocarpa] gi|222859585|gb|EEE97132.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/244 (87%), Positives = 232/244 (95%), Gaps = 1/244 (0%)

Query: 1   MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
           MAQAVEDWYKQMPIITR+Y+TAA+VTT+GCSLDIISP NL L+P LV+K+Y+FWRL+TNF
Sbjct: 1   MAQAVEDWYKQMPIITRSYVTAAVVTTIGCSLDIISPSNLYLNPKLVMKNYEFWRLVTNF 60

Query: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
           L+FRKMDLDF+FHMFFLARYCKLLEENSFRGRTADF YMLLFGA+ LT  V+IGG IPYL
Sbjct: 61  LYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMLLFGASVLTSIVIIGGNIPYL 120

Query: 121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
           SESF+KIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFSKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
           VDLLGMIAGHAYYFLEDVYPRMTGRRPL+TP FIK+LFAD+AVVVARPANVRFA PPAEE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLRTPGFIKSLFADDAVVVARPANVRFA-PPAEE 239

Query: 241 VHQD 244
           +HQD
Sbjct: 240 LHQD 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2138952	244	DER2.2 "AT4G04860" [Arabidopsi	1.0	1.0	0.819	2.1e-107
TAIR|locus:2141652	244	DER2.1 "AT4G21810" [Arabidopsi	1.0	1.0	0.811	2.2e-105
ZFIN|ZDB-GENE-040426-1324	247	derl3 "Der1-like domain family	0.848	0.838	0.484	1e-52
ZFIN|ZDB-GENE-050522-90	239	derl2 "Der1-like domain family	0.840	0.857	0.470	2.7e-52
DICTYBASE|DDB_G0285131	254	derl2 "derlin-2" [Dictyosteliu	0.979	0.940	0.442	3.5e-52
UNIPROTKB|F6PVF9	239	DERL2 "Uncharacterized protein	0.815	0.832	0.488	5.6e-52
UNIPROTKB|Q9GZP9	239	DERL2 "Derlin-2" [Homo sapiens	0.815	0.832	0.488	5.6e-52
UNIPROTKB|Q5RC74	239	DERL2 "Derlin-2" [Pongo abelii	0.815	0.832	0.488	5.6e-52
UNIPROTKB|E1BX18	239	DERL2 "Uncharacterized protein	0.840	0.857	0.474	1.2e-51
RGD|6496100	239	LOC100910823 "derlin-2-like" [	0.815	0.832	0.478	1.5e-51

TAIR|locus:2138952 DER2.2 "AT4G04860" [Arabidopsis thaliana (taxid:3702)]

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 200/244 (81%), Positives = 218/244 (89%)

Query:     1 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
             MAQAVE+WYKQMPIITR+YLTAA++TTVGCSLDIISP+NL L+PTLVVK YQ+WRL+TNF
Sbjct:     1 MAQAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNF 60

Query:    61 LFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
             L+FRK            ARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYL
Sbjct:    61 LYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYL 120

Query:   121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
             S SFAKIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW
Sbjct:   121 SASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query:   181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
             VDLLGMIAGHAYYFL +VYPRMT RRPLKTPSF+KALFADE VVVARP +VRFA  P +E
Sbjct:   181 VDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRFAAAPFDE 240

Query:   241 VHQD 244
             +HQD
Sbjct:   241 IHQD 244

GO:0006508 "proteolysis" evidence=ISS

TAIR|locus:2141652 DER2.1 "AT4G21810" [Arabidopsis thaliana (taxid:3702)]

 Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
 Identities = 198/244 (81%), Positives = 215/244 (88%)

Query:     1 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
             MAQAVE+WYKQMPIITR+YLTAA+VTTVGCSL+IISP+NL L+PTLVVK YQFWRL+TNF
Sbjct:     1 MAQAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNF 60

Query:    61 LFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
             L+FRK            ARYCKLLEENSFRG+TADFLYMLLFGAT LTG VLIGGMIPYL
Sbjct:    61 LYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYL 120

Query:   121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
             S SF+KIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW
Sbjct:   121 SVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query:   181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 240
              D LGMIAGHAYYFL  VYPRMT RRPLKTPSF+KALFADE VV+ARP +VRFA  P +E
Sbjct:   181 GDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRFAHAPFDE 240

Query:   241 VHQD 244
             +HQD
Sbjct:   241 IHQD 244

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

ZFIN|ZDB-GENE-040426-1324 derl3 "Der1-like domain family, member 3" [Danio rerio (taxid:7955)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 106/219 (48%), Positives = 139/219 (63%)

Query:     1 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
             MA +V   Y Q+P +TR Y TA ++TT    L++I+PF L  +P L++K YQ WRLITNF
Sbjct:     1 MANSVTQEYMQIPAVTRAYTTACVLTTAAVQLELITPFQLYFNPDLILKKYQIWRLITNF 60

Query:    61 LFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
             LFF               RYC++LEE SFRGRTADF+YM LFG   +T   L G      
Sbjct:    61 LFFGPLGFSFLFNMIFLYRYCRMLEEGSFRGRTADFVYMFLFGGVLMT---LFG------ 111

Query:   121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
                F+ + FL  + T+M+VYVWS++NPF+ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct:   112 --LFSNLFFLGQAFTIMLVYVWSRRNPFVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIV 169

Query:   181 VDLLGMIAGHAYYFLEDVYPRMTG-RRPLKTPSFIKALF 218
             +DLLG+  GH YYFLEDV+P   G R+ L TP   + LF
Sbjct:   170 IDLLGIGVGHIYYFLEDVFPNQPGGRKLLATPGIFRFLF 208

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050522-90 derl2 "Der1-like domain family, member 2" [Danio rerio (taxid:7955)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 102/217 (47%), Positives = 141/217 (64%)

Query:     3 QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLF 62
             Q +   Y Q+P++TR Y TA ++TT    L++I+PF L  +P L++++YQ WRLITNFLF
Sbjct:     4 QTIRQEYLQIPVVTRAYTTACVLTTAAVQLELITPFQLYFNPDLILRNYQVWRLITNFLF 63

Query:    63 FRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSE 122
             F               RYC++LEE SFRGRTADF++M LFG   +T   + G        
Sbjct:    64 FGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGLLMT---IFG-------- 112

Query:   123 SFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVD 182
             +F  ++FL  + T+M+VY+WS++NP + M+F GL  F A +LPWVL+GFS+ +G S  VD
Sbjct:   113 TFVNLVFLGQAFTIMLVYIWSRRNPNVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVD 172

Query:   183 LLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
             LLG+  GH YYFLEDV+P   G  R L+TPS +K LF
Sbjct:   173 LLGIAVGHVYYFLEDVFPNQPGGGRWLRTPSILKMLF 209

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0285131 derl2 "derlin-2" [Dictyostelium discoideum (taxid:44689)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 108/244 (44%), Positives = 150/244 (61%)

Query:     1 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNF 60
             MAQ  EDWYK +PI+T+ Y+T  +VT+V   L ++ P  L L+  LV   Y+FWRL TNF
Sbjct:     1 MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNF 60

Query:    61 LFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 120
              F+ +             R+ +LLEE+SFRGR+AD+L+M +FG+ FL   +LI     + 
Sbjct:    61 FFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGS-FL---LLIMDAFLFY 116

Query:   121 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 180
             ++   K++FL+ S+  M++YVWS++NP +H+SFLGLFTF+A YLPWV+L           
Sbjct:   117 TKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLT 176

Query:   181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALF-ADEAVVVARPANVRFAPPPAE 239
              DLLG +AGHAYYFLED YP ++ RR LKTP F+K L    E  +V             +
Sbjct:   177 TDLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLMDGQEQPIVDAHQQQEVQQAQQQ 236

Query:   240 EVHQ 243
             EV Q
Sbjct:   237 EVQQ 240

GO:0003674 "molecular_function" evidence=ND

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|F6PVF9 DERL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 103/211 (48%), Positives = 138/211 (65%)

Query:     9 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXX 68
             Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF     
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:    69 XXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKII 128
                       RYC++LEE SFRGRTADF++M LFG   +T   L G         F  ++
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG--------LFVSLV 118

Query:   129 FLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIA 188
             FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   189 GHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
             GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct:   179 GHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

UNIPROTKB|Q9GZP9 DERL2 "Derlin-2" [Homo sapiens (taxid:9606)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 103/211 (48%), Positives = 138/211 (65%)

Query:     9 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXX 68
             Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF     
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:    69 XXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKII 128
                       RYC++LEE SFRGRTADF++M LFG   +T   L G         F  ++
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG--------LFVSLV 118

Query:   129 FLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIA 188
             FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   189 GHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
             GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct:   179 GHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5RC74 DERL2 "Derlin-2" [Pongo abelii (taxid:9601)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 103/211 (48%), Positives = 138/211 (65%)

Query:     9 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXX 68
             Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF     
Sbjct:    10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:    69 XXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKII 128
                       RYC++LEE SFRGRTADF++M LFG   +T   L G         F  ++
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG--------LFVSLV 118

Query:   129 FLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIA 188
             FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   189 GHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
             GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct:   179 GHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0030307 "positive regulation of cell growth" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISS

UNIPROTKB|E1BX18 DERL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 103/217 (47%), Positives = 140/217 (64%)

Query:     3 QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLF 62
             Q     Y Q+P +TR Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITN+LF
Sbjct:     4 QTFRQEYLQVPPVTRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQVWRLITNYLF 63

Query:    63 FRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSE 122
             F               RYC++LEE SFRGRTADF++M LFG   +T    I G+      
Sbjct:    64 FGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT----IFGL------ 113

Query:   123 SFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVD 182
              F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VD
Sbjct:   114 -FVNLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLIFQAPFLPWVLMGFSLLLGNSIIVD 172

Query:   183 LLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
             LLG+  GH Y+FLEDV+P   G  R L+TPS +KA+F
Sbjct:   173 LLGIAVGHIYFFLEDVFPNQPGGGRLLRTPSVLKAIF 209

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

RGD|6496100 LOC100910823 "derlin-2-like" [Rattus norvegicus (taxid:10116)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 101/211 (47%), Positives = 138/211 (65%)

Query:     9 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXX 68
             Y Q+P ++R Y TA ++TT G  L++I+PF L  +P L+ KH+Q WRLITNFLFF     
Sbjct:    10 YLQIPPVSRAYTTACVLTTAGQQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGF 69

Query:    69 XXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKII 128
                       RYC++LEE SFRGRTADF++M LFG   +T   L G         F  ++
Sbjct:    70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG--------LFVSLV 118

Query:   129 FLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIA 188
             FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+  
Sbjct:   119 FLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAV 178

Query:   189 GHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
             GH Y+FLED++P   G  R LKTPS ++ +F
Sbjct:   179 GHIYFFLEDIFPNQPGGIRILKTPSILRTIF 209

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BNI4	DERL2_MOUSE	No assigned EC number	0.4884	0.8401	0.8577	yes	no
Q851X7	DERL2_ORYSJ	No assigned EC number	0.8565	0.9426	0.9236	yes	no
Q9ZS88	DER22_ARATH	No assigned EC number	0.8647	1.0	1.0	yes	no
Q9GZP9	DERL2_HUMAN	No assigned EC number	0.5023	0.8401	0.8577	yes	no
Q21997	DERL2_CAEEL	No assigned EC number	0.4375	0.9180	0.9451	yes	no
Q5RC74	DERL2_PONAB	No assigned EC number	0.5023	0.8401	0.8577	yes	no
Q54NN1	DERL2_DICDI	No assigned EC number	0.4976	0.8729	0.8385	yes	no
Q4G2J4	DER21_MAIZE	No assigned EC number	0.8478	0.9426	0.9236	N/A	no
Q4G2J3	DER22_MAIZE	No assigned EC number	0.8521	0.9426	0.9236	N/A	no
Q8VZ96	DER21_ARATH	No assigned EC number	0.8606	1.0	1.0	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_IV1734	hypothetical protein (245 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400185	hypothetical protein (228 aa)						•			0.800
	eugene3.00021229	hypothetical protein (227 aa)						•			0.800
	estExt_Genewise1_v1.C_LG_VII3310	hypothetical protein (230 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam04511	192	pfam04511, DER1, Der1-like family	1e-59
COG5291	313	COG5291, COG5291, Predicted membrane protein [Func	1e-37

>gnl|CDD|218120 pfam04511, DER1, Der1-like family

 Score =  186 bits (474), Expect = 1e-59
 Identities = 93/202 (46%), Positives = 129/202 (63%), Gaps = 13/202 (6%)

Query: 12  MPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFL 71
           +P +TR +  A ++ T+   L++ISP  L  +  LV K +Q WRL+T+  +F      FL
Sbjct: 1   IPPVTRYWTLATVLLTILGRLNLISPLKLVFNWELVFKKFQIWRLLTSLFYFGNTGFHFL 60

Query: 72  FHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS 131
           F+++FL RY  +LE  SFRGR AD+LYML+FGA  +T    I G+I           FL 
Sbjct: 61  FNLYFLYRYSSMLENGSFRGRAADYLYMLIFGAVLIT----IFGLIVNAY-------FLG 109

Query: 132 NSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG-ASAWVDLLGMIAGH 190
             LT M+VYVWS++N  + ++F GL  F A+YLPWVLLGFS  +G  S+ VDL+G++ GH
Sbjct: 110 QGLTAMIVYVWSRKNADVQVNFFGLIRFKASYLPWVLLGFSFLLGNRSSLVDLMGILVGH 169

Query: 191 AYYFLEDVYPRMT-GRRPLKTP 211
            YYF +DVYPR+  G+  LKTP
Sbjct: 170 LYYFFKDVYPRLPGGKDLLKTP 191

The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localised to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.). Length = 192

>gnl|CDD|227611 COG5291, COG5291, Predicted membrane protein [Function unknown]

 Score =  133 bits (336), Expect = 1e-37
 Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 12/208 (5%)

Query: 12  MPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFL 71
           +P ITR         T+   +D++SP+    +  L +K  Q WRL T+FL+F K  LD  
Sbjct: 19  IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMF 78

Query: 72  FHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS 131
            H++FL RY ++LEE  F     ++ + LL  +  +     I G I  L  SF+  I   
Sbjct: 79  MHVYFLYRYSRMLEEGCFNTSLVEYFWYLLVISLVIFAISNIYGGISALGTSFSATI--- 135

Query: 132 NSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWV-DLLGMIAGH 190
                   Y+WSK+NP   + F G  +    YLP++LLGFS        + D+LG + GH
Sbjct: 136 -------TYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGISIDDVLGFVVGH 188

Query: 191 AYYFLEDVYPRMTGRRPLKTPSFIKALF 218
            +++  D+YP M GR  L TP ++K LF
Sbjct: 189 LFHYFGDIYP-MIGRDILSTPCWVKKLF 215

Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG0858	239	consensus Predicted membrane protein [Function unk	100.0
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	100.0
COG5291	313	Predicted membrane protein [Function unknown]	100.0
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.79
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.44
PTZ00101	278	rhomboid-1 protease; Provisional	99.29
COG0705	228	Membrane associated serine protease [Amino acid tr	99.28
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.1
KOG4463	323	consensus Uncharacterized conserved protein [Funct	98.52
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	98.16
KOG2890	326	consensus Predicted membrane protein [Function unk	98.15
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	97.3
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	81.37

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2.7e-59  Score=395.58  Aligned_cols=209  Identities=60%  Similarity=1.060  Sum_probs=198.2

Q ss_pred             CchhHHHHHhcCChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHH
Q 026045            1 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARY   80 (244)
Q Consensus         1 m~~~~~~~~~~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~   80 (244)
                      |.+++.+|+.+||||||++.++|+++++++++++++|.+++++|++|+||+|+||++|+++++|++++++++||+++|+|
T Consensus         1 ~~~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY   80 (239)
T KOG0858|consen    1 ANMDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRY   80 (239)
T ss_pred             CchhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHH
Confidence            56779999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhHHHHHHHHHHHhhccCCCceeEEEEeeecc
Q 026045           81 CKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFT  160 (244)
Q Consensus        81 ~~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~lfG~i~i~  160 (244)
                      |++||++.|+++++||++|+++++.++++.+.           ..+..+|+++++.+++|+|||+||+.+|+++|++++|
T Consensus        81 ~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~-----------~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~  149 (239)
T KOG0858|consen   81 SSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL-----------FVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFK  149 (239)
T ss_pred             HHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCc
Confidence            99999999999999999999999988775532           2467799999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhhhccCC-CCCCCcCChHHHHHhhcc
Q 026045          161 AAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRM-TGRRPLKTPSFIKALFAD  220 (244)
Q Consensus       161 a~ylP~~~l~~~~l~~~s~~~~l~Gil~Ghly~fL~~~~p~~-~g~~~l~tP~~~~~lf~~  220 (244)
                      |+|+||++++++++.+++.+.++.||++||+|+|++|++|+. +|++++|||+|+++++++
T Consensus       150 a~YlPwvll~fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~  210 (239)
T KOG0858|consen  150 APYLPWVLLGFSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFAD  210 (239)
T ss_pred             cccchHHHHHHHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCC
Confidence            999999999999999987799999999999999999999985 569999999999999987

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=100.00  E-value=5e-51  Score=344.94  Aligned_cols=195  Identities=47%  Similarity=0.931  Sum_probs=181.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCC
Q 026045           12 MPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRG   91 (244)
Q Consensus        12 iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~   91 (244)
                      +|||||+++++++++++++.+|+++|.++++||+++++|+|+||++|++|++|+.+++++++++++|++|++||+++|++
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~   80 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG   80 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhHHHHHHHHHHHhhccCCCceeEEEEeeeccccchHHHHHHH
Q 026045           92 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGF  171 (244)
Q Consensus        92 ~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~lfG~i~i~a~ylP~~~l~~  171 (244)
                      +++||+|+++++++++.+.+.+..      ....+.+++++++..+++|+|||+||+++|+++|++++|++|+||+++++
T Consensus        81 ~~ady~~~ll~~~~~i~~~~~~~~------~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~  154 (197)
T PF04511_consen   81 RSADYLWFLLFGASLILILSLLIG------PYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAF  154 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhc------cchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHH
Confidence            999999999999888877665421      11235578999999999999999999999999999999999999999999


Q ss_pred             HHHhcc-hhHHHHHHHHHHHHHHHhhhhccCCC-CCCCcCChH
Q 026045          172 SVFVGA-SAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPS  212 (244)
Q Consensus       172 ~~l~~~-s~~~~l~Gil~Ghly~fL~~~~p~~~-g~~~l~tP~  212 (244)
                      ++++++ +...|+.|+++||+|+|++|++|+.. |++++|||+
T Consensus       155 ~~l~~~~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~  197 (197)
T PF04511_consen  155 SLLFGGSSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ  197 (197)
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence            999987 78999999999999999999999975 899999995

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>COG5291 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1e-39  Score=275.70  Aligned_cols=199  Identities=35%  Similarity=0.688  Sum_probs=181.4

Q ss_pred             CChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCC
Q 026045           12 MPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRG   91 (244)
Q Consensus        12 iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~   91 (244)
                      |||+||++..+..+++++..+++++|.++++.|++++|+.|+||++||++++++..++.+++++++|++|++||+.+|+.
T Consensus        19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~   98 (313)
T COG5291          19 IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNT   98 (313)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCc
Confidence            99999999999999999999999999999999999999999999999999999889999999999999999999999987


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhHHHHHHHHHHHhhccCCCceeEEEEeeeccccchHHHHHHH
Q 026045           92 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGF  171 (244)
Q Consensus        92 ~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~lfG~i~i~a~ylP~~~l~~  171 (244)
                      +-.||+||+++++.++..++.+.+          +...|++++..++.|.|+++||+.++++||+|++++||+|++++++
T Consensus        99 ~lv~Y~~yl~~~~l~i~a~s~I~g----------g~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgf  168 (313)
T COG5291          99 SLVEYFWYLLVISLVIFAISNIYG----------GISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGF  168 (313)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhc----------chhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHH
Confidence            778999999999888876654421          2346889999999999999999999999999999999999999999


Q ss_pred             HHHhc-chhHHHHHHHHHHHHHHHhhhhccCCCCCCCcCChHHHHHhhccc
Q 026045          172 SVFVG-ASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADE  221 (244)
Q Consensus       172 ~~l~~-~s~~~~l~Gil~Ghly~fL~~~~p~~~g~~~l~tP~~~~~lf~~~  221 (244)
                      +++.+ +....++.|+.+||+..++.++||++ |++.+.||.|.+++|.+.
T Consensus       169 sfl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~~~~  218 (313)
T COG5291         169 SFLSRRGISIDDVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLFNEH  218 (313)
T ss_pred             HHHhcCCccceeeeeeeeccccccccchhhhh-hcccCCCcccccccccCC
Confidence            99997 66788999999999999999999987 577888888888776443

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.79  E-value=1.1e-18  Score=150.31  Aligned_cols=182  Identities=23%  Similarity=0.304  Sum_probs=138.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHh
Q 026045            5 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLL   84 (244)
Q Consensus         5 ~~~~~~~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~L   84 (244)
                      ..+++..+|+.|-.++..+.++.+.+.+..+.  ...+.+...++|.|+||++|+.++|.+ -+|++|||..+|..+.+.
T Consensus         7 ~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s-~~hllfnmlaL~~~g~~f   83 (258)
T KOG2632|consen    7 VGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLS-LPHLLFNMLALWPLGSQF   83 (258)
T ss_pred             CccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHhchhHH
Confidence            45778899999999999999999988664443  455666677889999999999999998 899999999999999999


Q ss_pred             hhcccCCChhhHHHHHHHHHH----HHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHHHhhccCCCceeEEEEeeec
Q 026045           85 EENSFRGRTADFLYMLLFGAT----FLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGLFTF  159 (244)
Q Consensus        85 E~~~f~~~~~~y~~~ll~~~~----~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~lfG~i~i  159 (244)
                      |+.++  .+..++++..+.+.    +.+++...  +..+  .........| ++..++++-+-+-+.|..+.++||.+.+
T Consensus        84 E~~~G--~t~~~l~~~~llalf~gIl~ll~~~~--~~~~--d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~si  157 (258)
T KOG2632|consen   84 ERTHG--TTVRILMFTVLLALFSGILYLLAYHV--FLLS--DLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSI  157 (258)
T ss_pred             Hhhcc--ceehHHHHHHHHHHHHHHHHHHHHHH--Hhhc--chhhhcccccccHHHHHHHHHHhhcCcccchhhcccccc
Confidence            99884  35556555543322    21222110  0001  1111111222 6788888888888999999999999999


Q ss_pred             cccchHHHHHHHH-HHh-cchhHHHHHHHHHHHHHHHh
Q 026045          160 TAAYLPWVLLGFS-VFV-GASAWVDLLGMIAGHAYYFL  195 (244)
Q Consensus       160 ~a~ylP~~~l~~~-~l~-~~s~~~~l~Gil~Ghly~fL  195 (244)
                      |+++.||+.++.+ ++. +.|+++|++|+++|+.|-+.
T Consensus       158 P~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  158 PIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             cHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            9999999999886 555 46899999999999999983

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.44  E-value=1e-12  Score=116.29  Aligned_cols=168  Identities=17%  Similarity=0.245  Sum_probs=103.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCccCCceEEee-chhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhccc
Q 026045           11 QMPIITRTYLTAAIVTTVGCSLDIISPFNLCLH-PTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSF   89 (244)
Q Consensus        11 ~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~-~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f   89 (244)
                      +-.|+|..+++.|++++++..++-.....-.+. +.....++|+||++|+.|.|++ .+|++|||+++|..|+.+|+.. 
T Consensus        92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~-~~Hl~fNml~l~~lG~~iE~~~-  169 (276)
T PRK10907         92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFS-LLHILFNLLWWWYLGGAVEKRL-  169 (276)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCC-HHHHHHHHHHHHHHHHHHHHHH-
Confidence            456899999999999999876643222111122 2223357899999999999998 8999999999999999999987 


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHH-HHh--hccCCCceeEEEEeeeccccchH
Q 026045           90 RGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMV-YVW--SKQNPFIHMSFLGLFTFTAAYLP  165 (244)
Q Consensus        90 ~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~-y~w--s~~~p~~~v~lfG~i~i~a~ylP  165 (244)
                        ++..++...++++++-.+.....      .+    .++.| |+.+++++ |.|  .++.|+...      .+|..++.
T Consensus       170 --G~~~~l~l~l~s~i~~~~~~~~~------~~----~~~gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~  231 (276)
T PRK10907        170 --GSGKLIVITLISALLSGWVQSKF------SG----PWFGGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIA  231 (276)
T ss_pred             --ChHHHHHHHHHHHHHHHHHHHHH------cc----chhhHHHHHHHHHHHHHHHHhccccccch------hhhHHHHH
Confidence              34556555554443322222111      11    12333 55555543 555  455665433      23333322


Q ss_pred             HHHH--H--HHHHhcc--hhHHHHHHHHHHHHHHHhhhh
Q 026045          166 WVLL--G--FSVFVGA--SAWVDLLGMIAGHAYYFLEDV  198 (244)
Q Consensus       166 ~~~l--~--~~~l~~~--s~~~~l~Gil~Ghly~fL~~~  198 (244)
                      +..+  +  +.-+.+.  +-.+|+.|.++|.+..+++..
T Consensus       232 f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        232 FALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             HHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence            2221  1  1112232  347899999999998887643

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.29  E-value=4.8e-11  Score=105.65  Aligned_cols=90  Identities=16%  Similarity=0.204  Sum_probs=67.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHhc-C---ccCCc-----eE-EeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHH
Q 026045           11 QMPIITRTYLTAAIVTTVGCSL-D---IISPF-----NL-CLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARY   80 (244)
Q Consensus        11 ~iPpvTr~~i~~~~~~~ll~~~-~---~~~p~-----~l-~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~   80 (244)
                      ++|.+|..+++.+++++++... +   ...|.     ++ .++++.+ +++|+||++|+.|.|++ .+|+++||+++|..
T Consensus        51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~-~~HLl~Nm~~l~~~  128 (278)
T PTZ00101         51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHAN-IFHTFFNVFFQLRM  128 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence            5789999999999999887544 2   12232     12 2455555 57999999999999998 89999999999999


Q ss_pred             HHHhhhcccCCChhhHHHHHHHHHH
Q 026045           81 CKLLEENSFRGRTADFLYMLLFGAT  105 (244)
Q Consensus        81 ~~~LE~~~f~~~~~~y~~~ll~~~~  105 (244)
                      |..+|+..+   +..|....+++++
T Consensus       129 G~~lE~~~G---~~r~~ilYl~sGi  150 (278)
T PTZ00101        129 GFTLEKNYG---IVKIIILYFLTGI  150 (278)
T ss_pred             HHHHHHHHC---hHHHHHHHHHHHH
Confidence            999999883   4445533333333

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.28  E-value=5.1e-11  Score=102.51  Aligned_cols=174  Identities=24%  Similarity=0.224  Sum_probs=123.2

Q ss_pred             CChHHHHHHHHHHHHHHHHhcCccCCce--------EEeechhhhhhh---chhhhhhhhhccCCCCHHHHHHHHHHHHH
Q 026045           12 MPIITRTYLTAAIVTTVGCSLDIISPFN--------LCLHPTLVVKHY---QFWRLITNFLFFRKMDLDFLFHMFFLARY   80 (244)
Q Consensus        12 iPpvTr~~i~~~~~~~ll~~~~~~~p~~--------l~l~~~~v~~~~---qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~   80 (244)
                      .|++|+.++..++++.+...........        ..+.+.......   |.||++|+.|.|++ -.|+++||..+|.+
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~-~~Hll~N~~~l~~f   94 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG-FLHLLFNMLALWVF   94 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence            4999999999999999887643222111        122232222222   89999999999998 89999999999999


Q ss_pred             HHHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHHHhhccCCCceeEEEEe-ee
Q 026045           81 CKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGL-FT  158 (244)
Q Consensus        81 ~~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~lfG~-i~  158 (244)
                      |..+|+..+   +..|+.+.+.++++..+.....+       +....+.+| |+.+++++-.++...|..+...... ++
T Consensus        95 g~~le~~~G---~~~f~~~yl~~gl~~~~~~~~~~-------~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~  164 (228)
T COG0705          95 GSNLERRLG---TLRFLLFYLLSGLLAGLAQVLFG-------PKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLP  164 (228)
T ss_pred             hHHHHHHhc---hhHHHHHHHHHHHHHHHHHHHHc-------ccccCcccchhHHHHHHHHHHHHHccccchhhhhccCc
Confidence            999999884   33466555555544333322211       111124455 8889999999999999998887755 77


Q ss_pred             ccccchHHHHHHHHHHhc-ch------hHHHHHHHHHHHHHHHhh
Q 026045          159 FTAAYLPWVLLGFSVFVG-AS------AWVDLLGMIAGHAYYFLE  196 (244)
Q Consensus       159 i~a~ylP~~~l~~~~l~~-~s------~~~~l~Gil~Ghly~fL~  196 (244)
                      .++..+-.+.++.+++++ .+      ..+|+.|++.|.+|....
T Consensus       165 ~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~  209 (228)
T COG0705         165 RPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL  209 (228)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777887764 22      578999999999988643

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.10  E-value=1.6e-10  Score=91.90  Aligned_cols=135  Identities=21%  Similarity=0.210  Sum_probs=79.4

Q ss_pred             hhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhh
Q 026045           49 KHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKII  128 (244)
Q Consensus        49 ~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~  128 (244)
                      +++|+||++|+.|.|.+ ..|+++|++.++.++..+|+..   ++.++....+.+++...+...+...     .   ..+
T Consensus         2 ~~~~~wrl~T~~f~h~~-~~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~~~~-----~---~~~   69 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHAN-FLHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLLFSP-----P---NQP   69 (145)
T ss_dssp             GCC-TTHHHHGGG--SS-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH------S------
T ss_pred             CCCcchhhhHHHHHccC-HHHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhccccccc-----c---ccc
Confidence            67999999999999998 8999999999999999999988   3445555444444333333222110     0   002


Q ss_pred             hhH-HHHHHHHHHHhhccCCCceeEE---EEeeeccccchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhh
Q 026045          129 FLS-NSLTLMMVYVWSKQNPFIHMSF---LGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLE  196 (244)
Q Consensus       129 ~l~-~~l~~~l~y~ws~~~p~~~v~l---fG~i~i~a~ylP~~~l~~~~l~~~s~~~~l~Gil~Ghly~fL~  196 (244)
                      ..| ++.++++.-......|+.+...   ...+.++..++++.+.... ..+.+...|+.|.++|.+|.+..
T Consensus        70 ~~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~  140 (145)
T PF01694_consen   70 YVGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLI  140 (145)
T ss_dssp             --SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence            233 5555555555544444332211   2234444445554333322 22356789999999999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=2.2e-07  Score=80.51  Aligned_cols=168  Identities=17%  Similarity=0.349  Sum_probs=102.4

Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhh-hhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhc
Q 026045            9 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVK-HYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEEN   87 (244)
Q Consensus         9 ~~~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~-~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~   87 (244)
                      +.++| |||..++.+.+.++.....-.++ .+.++++.++. ++|+||++-+-|.+.. ..+..+.++.+| +.+.+|+.
T Consensus         8 ~~nmp-VTK~~~iT~~~~~vvagI~~~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n-~~e~~~~l~I~Y-~fR~~ERl   83 (323)
T KOG4463|consen    8 FHNMP-VTKAFVITSALFTVVAGIQGRKS-KFGLSYQDILEKYFQYWRLLMSQFAFSN-TPELMFGLYILY-YFRVFERL   83 (323)
T ss_pred             ccccc-hHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH-HHHHHHHH
Confidence            45664 99999999999888765543444 46677776665 5999999999999886 788888888777 66899998


Q ss_pred             ccCCChhhHHHHHHHHHHH----HHHHHHh----hcccccccchhhhhhhhH-HHHHHHHHHHhhccCCC-ceeEEEEee
Q 026045           88 SFRGRTADFLYMLLFGATF----LTGTVLI----GGMIPYLSESFAKIIFLS-NSLTLMMVYVWSKQNPF-IHMSFLGLF  157 (244)
Q Consensus        88 ~f~~~~~~y~~~ll~~~~~----i~~~s~~----~~~~~y~~~~~~~~~~l~-~~l~~~l~y~ws~~~p~-~~v~lfG~i  157 (244)
                      .++.|   |+-++++..++    ..+++++    .+.+.|          +. .+++++..|-+--.-|- ..+.+|+ +
T Consensus        84 LGShk---y~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~----------~qp~~liFa~~~~~y~~ip~~~f~r~f~-~  149 (323)
T KOG4463|consen   84 LGSHK---YSVFIVFSGTVSLLLEVILLSLLKDTTANLLT----------SQPYGLIFASFIPFYLDIPVSTFFRVFG-V  149 (323)
T ss_pred             hcccc---ceeehhHHHHHHHHHHHHHHHHHHHHHhhhhh----------cCCCceeeeeccceEEEecceeEEEeec-c
Confidence            85444   65555554332    2222222    111212          11 13555555444333343 3445665 6


Q ss_pred             ecccc---chHHHHHHHHHHhc----c-------hhHHHHHHHHHHHHHHH
Q 026045          158 TFTAA---YLPWVLLGFSVFVG----A-------SAWVDLLGMIAGHAYYF  194 (244)
Q Consensus       158 ~i~a~---ylP~~~l~~~~l~~----~-------s~~~~l~Gil~Ghly~f  194 (244)
                      ++..|   .+|.+=++++...+    .       +....+.|++.||+|..
T Consensus       150 ~f~dkni~~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~  200 (323)
T KOG4463|consen  150 NFSDKNISFIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRL  200 (323)
T ss_pred             cccccceeeecccchhhhcCcccccccccceeecccccccchhhhhhHhhc
Confidence            66666   33333333433221    1       23457789999999864

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=98.16  E-value=1.5e-06  Score=78.09  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             eechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhccccccc
Q 026045           42 LHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLS  121 (244)
Q Consensus        42 l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~  121 (244)
                      ..++...++.|.||++|+.+.|.+ .+|+.+|+......|-.||+.++.  ..-.+.|++ +++.-.+++.++....+..
T Consensus       108 ~~i~~~~~r~E~WRllTym~LHaG-i~HL~~N~~~ql~iGi~LE~~~G~--~RiglIYl~-gg~aGSlls~l~d~~~~sV  183 (316)
T KOG2289|consen  108 LLIYKPVHRGELWRLLTYMWLHAG-IFHLLLNMLSQLFIGIPLEQVHGF--LRIGLIYLA-GGVAGSLLSSLFDPNSISV  183 (316)
T ss_pred             ceecChhhhchhHHHHHHHHHhcC-HHHHHHHHHHHHhccccHHhhcCc--eEEeeehhh-hhhhhHHHHHHhccCCcee
Confidence            344455678999999999999998 899999999999999999998743  222333333 2221222233321111111


Q ss_pred             chhhhhhhhHHHHHHHHHHHhhccCCCceeEEEEeeeccccchHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHhhh
Q 026045          122 ESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG----ASAWVDLLGMIAGHAYYFLED  197 (244)
Q Consensus       122 ~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~lfG~i~i~a~ylP~~~l~~~~l~~----~s~~~~l~Gil~Ghly~fL~~  197 (244)
                      |......-|-.+....++-=|........          +.-.-.+.++++.-+|    .....|+.|...|-.+-|+..
T Consensus       184 GASggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~  253 (316)
T KOG2289|consen  184 GASGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLH  253 (316)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhh
Confidence            11111111223333444444543332211          1111122223444444    234678999999988888877


Q ss_pred             hccCCC
Q 026045          198 VYPRMT  203 (244)
Q Consensus       198 ~~p~~~  203 (244)
                      +-|...
T Consensus       254 ~~g~~~  259 (316)
T KOG2289|consen  254 IGGQLG  259 (316)
T ss_pred             hcccee
Confidence            766543

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=98.15  E-value=8.8e-06  Score=72.04  Aligned_cols=187  Identities=17%  Similarity=0.200  Sum_probs=115.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHhcCc-----cCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHH
Q 026045            7 DWYKQMPIITRTYLTAAIVTTVGCSLDI-----ISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYC   81 (244)
Q Consensus         7 ~~~~~iPpvTr~~i~~~~~~~ll~~~~~-----~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~   81 (244)
                      +-..+.-++-+.++..++..++.+..+.     ..| .+.+-|.+++  +++|+++|+.|+-.. -...+.+...+--.|
T Consensus        19 ~~l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p-~y~lvp~~~~--~~~WtliTs~fie~~-vw~V~~sv~~L~v~G   94 (326)
T KOG2890|consen   19 ALLLNLEVVVSAICVLTLFGYILSFGNFTILLATLP-GYQLVPNALF--FFPWTLITSGFIELN-VWDVLVSVLTLSVGG   94 (326)
T ss_pred             hHhhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhcc-ccccCCcchh--hhhHHHHhcchhhhh-HHHHHHHHHheeecc
Confidence            3344455566677766666666654321     122 2334555555  699999999987554 899999999999999


Q ss_pred             HHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccc--cc-hhhhhhhhH-HHHHHHHHHHhhccCCCceeEEEEee
Q 026045           82 KLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL--SE-SFAKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGLF  157 (244)
Q Consensus        82 ~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~--~~-~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~lfG~i  157 (244)
                      +.+|..++  ..+...++.+......+ ...+.+.+.|.  .. -....++-| .+...+++.+|-+..||..+.---.-
T Consensus        95 ~~lEp~Wg--~~e~lkff~ivn~~~~l-~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~  171 (326)
T KOG2890|consen   95 KFLEPNWG--SLELLKFFAIVNGSTTL-VVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSG  171 (326)
T ss_pred             eeeccCCC--CHHHHHHHHHhhchhHH-HHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccch
Confidence            99999993  33344433333322211 11111222221  00 001122333 67888999999999999987644333


Q ss_pred             eccccchHHHHHHHHHHhc-------chhHHHHHHHHHHHHHHHhhhhcc
Q 026045          158 TFTAAYLPWVLLGFSVFVG-------ASAWVDLLGMIAGHAYYFLEDVYP  200 (244)
Q Consensus       158 ~i~a~ylP~~~l~~~~l~~-------~s~~~~l~Gil~Ghly~fL~~~~p  200 (244)
                      ++..+.+|...++++++..       .++..-..|..++..|..+..--|
T Consensus       172 r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~  221 (326)
T KOG2890|consen  172 RFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHP  221 (326)
T ss_pred             hhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence            4555559988777665432       455667789999999987665555

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=97.30  E-value=0.00033  Score=52.87  Aligned_cols=51  Identities=22%  Similarity=0.255  Sum_probs=44.5

Q ss_pred             chhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCCChhhHHHHHHHHHHH
Q 026045           52 QFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATF  106 (244)
Q Consensus        52 qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~~~~~y~~~ll~~~~~  106 (244)
                      .+||++|+.|+..+ .+.++++...++..|+.+|+.+   ++.+++.++++....
T Consensus         7 ~pWtl~T~~fve~~-i~~~l~~~~~l~~~g~~lE~~W---Gs~E~lkFi~vv~~~   57 (99)
T PF08551_consen    7 YPWTLFTAGFVETN-IIGLLFSLLTLFYGGRYLEPIW---GSREFLKFILVVNVI   57 (99)
T ss_pred             ehHHHHHHHHHHhH-HHHHHHHHHHHHHhhHHHHHhc---ChHHHHHHHHHHHHH
Confidence            79999999999887 8999999999999999999999   367888887766544

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=81.37  E-value=1.1  Score=42.47  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=35.1

Q ss_pred             hchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhccc
Q 026045           51 YQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSF   89 (244)
Q Consensus        51 ~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f   89 (244)
                      -|++||.||.|.|.+ -+|.+..+.+=+...+.||+..+
T Consensus       449 dQfYRL~~SLFlHag-viH~~vSi~FQm~vmrdlEkL~g  486 (652)
T KOG2290|consen  449 DQFYRLWLSLFLHAG-VIHLLVSICFQMTVMRDLEKLAG  486 (652)
T ss_pred             hHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHhhc
Confidence            599999999999998 89999999999999999999663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.67
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.53

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.67  E-value=2.4e-16  Score=130.21  Aligned_cols=166  Identities=13%  Similarity=0.151  Sum_probs=109.7

Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCccCC--ceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcc
Q 026045           11 QMPIITRTYLTAAIVTTVGCSLDIISP--FNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENS   88 (244)
Q Consensus        11 ~iPpvTr~~i~~~~~~~ll~~~~~~~p--~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~   88 (244)
                      +.||+|+.+++.|++++++....-..+  ..+.++|+. .+++|+||++|+.|.|++ ..|+++||+.++.+|+.+|+..
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~-~~Hl~~Nm~~l~~~g~~~E~~~   79 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL   79 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHh
Confidence            579999999999999999876532111  234466654 467999999999999998 7999999999999999999987


Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHH---HhhccCCCceeEEEEeeeccccch
Q 026045           89 FRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVY---VWSKQNPFIHMSFLGLFTFTAAYL  164 (244)
Q Consensus        89 f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y---~ws~~~p~~~v~lfG~i~i~a~yl  164 (244)
                         ++.+|+...+.+++...+.+....      .    .+..| |+.+++++-   +.++++|+.++.    ++.|...+
T Consensus        80 ---G~~~fl~~yl~~~i~~~l~~~~~~------~----~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~  142 (181)
T 2xov_A           80 ---GSGKLIVITLISALLSGYVQQKFS------G----PWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIF  142 (181)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHH------C----SCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHH
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHHhc------C----CCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHH
Confidence               456677666655544333322211      0    01222 444443332   346788887653    23333322


Q ss_pred             HHHHHHHHHHh----cchhHHHHHHHHHHHHHHHh
Q 026045          165 PWVLLGFSVFV----GASAWVDLLGMIAGHAYYFL  195 (244)
Q Consensus       165 P~~~l~~~~l~----~~s~~~~l~Gil~Ghly~fL  195 (244)
                      -.+.+++.+..    +.+..+|+.|+++|.++..+
T Consensus       143 ~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~  177 (181)
T 2xov_A          143 ALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV  177 (181)
T ss_dssp             HHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            22333444432    34678999999999998764

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.53  E-value=3.6e-14  Score=118.57  Aligned_cols=167  Identities=13%  Similarity=0.193  Sum_probs=108.6

Q ss_pred             hcCChHHHHHHHHHHHHHHHHhcCccC--CceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhc
Q 026045           10 KQMPIITRTYLTAAIVTTVGCSLDIIS--PFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEEN   87 (244)
Q Consensus        10 ~~iPpvTr~~i~~~~~~~ll~~~~~~~--p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~   87 (244)
                      .+.||+|+.+++.+++++++....-..  ...+.++|+.+ +++|+||++|+.|.|++ ..|+++||+.++..|..+|+.
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~-~~Hl~~Nm~~l~~~G~~lE~~   83 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT   83 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999987653111  12345677665 67899999999999998 899999999999999999998


Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHH---HhhccCCCceeEEEEeeeccccc
Q 026045           88 SFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVY---VWSKQNPFIHMSFLGLFTFTAAY  163 (244)
Q Consensus        88 ~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y---~ws~~~p~~~v~lfG~i~i~a~y  163 (244)
                      .   ++..|+...+.+++...+.+....      +.    ...| |+.+++++-   +..++.|+. .    .++.+...
T Consensus        84 ~---G~~~~l~~yl~~~~~~~l~~~~~~------~~----~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~  145 (196)
T 2nr9_A           84 F---GSVKLLMLYVVASAITGYVQNYVS------GP----AFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFT  145 (196)
T ss_dssp             H---CHHHHHHHHHHHHHHHHHHHHHHH------CS----CCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTT
T ss_pred             H---ChHHHHHHHHHHHHHHHHHHHHhc------CC----CeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHH
Confidence            8   355666555555443333222211      00    1122 344443332   224566664 1    13444444


Q ss_pred             hHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHhh
Q 026045          164 LPWVLLGFSVFV-----GASAWVDLLGMIAGHAYYFLE  196 (244)
Q Consensus       164 lP~~~l~~~~l~-----~~s~~~~l~Gil~Ghly~fL~  196 (244)
                      +..+.+++++..     +.+..+|+.|+++|.++..+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~  183 (196)
T 2nr9_A          146 MLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFID  183 (196)
T ss_dssp             TTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            333334444443     246789999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.57
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.54

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.57  E-value=1.1e-15  Score=124.84  Aligned_cols=172  Identities=13%  Similarity=0.225  Sum_probs=106.5

Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhcCccCC-ceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhc
Q 026045            9 YKQMPIITRTYLTAAIVTTVGCSLDIISP-FNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEEN   87 (244)
Q Consensus         9 ~~~iPpvTr~~i~~~~~~~ll~~~~~~~p-~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~   87 (244)
                      +.+.+|+|..+++.|++++++...+...+ ..+...+....+++|+||++|+.|.|++ ..|+++|++.++..|..+|+.
T Consensus         2 l~~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~-~~Hl~~N~~~l~~~g~~~E~~   80 (189)
T d2nr9a1           2 LAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT   80 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999887654333 2233334445578999999999999998 899999999999999999998


Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHHHhhccCCCceeEEEEeeeccccchHH
Q 026045           88 SFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPW  166 (244)
Q Consensus        88 ~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~lfG~i~i~a~ylP~  166 (244)
                      .   ++.+++...+.++++..+.....          .+.+..| |+.++++.-.+....+..+..    +.++.+....
T Consensus        81 ~---G~~~~~~~~~~~~~~~~l~~~~~----------~~~~~vGaSG~v~gl~~~~~~~~~~~~~~----~~~~~~~~~~  143 (189)
T d2nr9a1          81 F---GSVKLLMLYVVASAITGYVQNYV----------SGPAFFGLSGVVYAVLGYVFIRDKLNHHL----FDLPEGFFTM  143 (189)
T ss_dssp             H---CHHHHHHHHHHHHHHHHHHHHHH----------HCSCCCCSHHHHHHHHHHHHHHHHSSTTS----CCCCCSSTTT
T ss_pred             H---HHHhhhhHHHHHHHHHHHHHHhc----------CCCCcccchHHHHHHHHHHHHHHHHhhhH----hccHHHHHHH
Confidence            8   35566554444433322222111          0112233 555555543333222222211    1222222222


Q ss_pred             --HHHHHHHHhc-----chhHHHHHHHHHHHHHHHhhhh
Q 026045          167 --VLLGFSVFVG-----ASAWVDLLGMIAGHAYYFLEDV  198 (244)
Q Consensus       167 --~~l~~~~l~~-----~s~~~~l~Gil~Ghly~fL~~~  198 (244)
                        +.+++.+...     .+..+|+.|+++|.++.++...
T Consensus       144 ~~~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         144 LLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             TTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence              2223334332     2458999999999999876543

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=5.9e-15  Score=119.34  Aligned_cols=91  Identities=15%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCccCC--ceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcc
Q 026045           11 QMPIITRTYLTAAIVTTVGCSLDIISP--FNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENS   88 (244)
Q Consensus        11 ~iPpvTr~~i~~~~~~~ll~~~~~~~p--~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~   88 (244)
                      +.+|+|..+++.+++++++....-..+  ..+.++.+. .+++|+||++|+.|.|++ ..|+++||+.++..|+.+|+..
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~-~~~g~~wrl~T~~f~H~~-~~Hl~~N~~~l~~~G~~lE~~~   79 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL   79 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCGGGGTGGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcc-cccCchHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhc
Confidence            679999999999999988765421111  122344444 457899999999999998 8999999999999999999988


Q ss_pred             cCCChhhHHHHHHHHHHH
Q 026045           89 FRGRTADFLYMLLFGATF  106 (244)
Q Consensus        89 f~~~~~~y~~~ll~~~~~  106 (244)
                         ++.+++...+.++..
T Consensus        80 ---G~~~~~~~~~~~~~~   94 (180)
T d3b45a1          80 ---GSGKLIVITLISALL   94 (180)
T ss_dssp             ---CHHHHHHHHHHHHHH
T ss_pred             ---cchhheeeeeHHHHH
Confidence               355565544444433