Citrus Sinensis ID: 026063

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MFDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Secondary Structure (PSIPRED)
cccccccccccccccEEcccccccHHHccccccHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfdvkqkprTMCLLMWllpfntepwqrrlqmpfissAILDRRSKRMSLMSLQEILTTSCLglvirasvpkldldatfEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLafsenvpgtsskdvMDMVLVTQYFDTMKeigassktnsvfiphgpgavKDIASQIREGLLQANATT
Flexible Loop (DISEMBL)
mfdvkqkprtMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFsenvpgtsskdvmDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Low Complexity Region (SEG)
MFDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNeinaaarlrlaanekaeaekiLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Disordered region (IsUnstruct)
*********TMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLA*********ILQI********SKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGAS**TNSVFIPHG***V******************
Disordered Region (DISOPRED)
*FDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLA***********DVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIR***L******
Disordered Region (DISEMBL)
********RTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Disordered Region (DISPRO)
*FDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQAN***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARxxxxxxxxxxxxxxxxxxxxxGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9FM19	286	Hypersensitive-induced re	yes	no	0.745	0.636	0.879	1e-89
Q9CAR7	286	Hypersensitive-induced re	no	no	0.737	0.629	0.9	3e-86
Q9SRH6	285	Hypersensitive-induced re	no	no	0.733	0.628	0.804	2e-83
Q9FHM7	292	Hypersensitive-induced re	no	no	0.745	0.623	0.620	7e-64
P16148	184	Protein PPLZ12 OS=Lupinus	N/A	no	0.696	0.923	0.629	1e-60
O26788	318	Uncharacterized protein M	yes	no	0.491	0.377	0.3	7e-05
P72655	321	Uncharacterized protein s	N/A	no	0.676	0.514	0.228	0.0005
P0DKS0	313	Protein QmcA OS=Wiggleswo	yes	no	0.659	0.514	0.235	0.0006
P0AA56	305	Protein QmcA OS=Shigella	yes	no	0.622	0.498	0.244	0.0008
P0AA53	305	Protein QmcA OS=Escherich	N/A	no	0.622	0.498	0.244	0.0008

>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/182 (87%), Positives = 173/182 (95%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPKL LD  FEQKNDIAKAVEEELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct: 104 VIRASVPKLLLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAAR+RLAANEKAEAEKILQIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVL F+ 
Sbjct: 164 INAAARMRLAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAV 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGT++KDVMDMVLVTQYFDTMKEIGASSK+++VFIPHGPGAV+D+ASQIR+GLLQ ++
Sbjct: 224 NVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSS 283

Query: 243 TT 244
             
Sbjct: 284 AN 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1

 Score =  317 bits (813), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 162/180 (90%), Positives = 175/180 (97%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPKLDLD+TFEQKNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNE
Sbjct: 104 VIRASVPKLDLDSTFEQKNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAA+R+R AA+EKAEAEKILQIKRAEGEAESKYL+G+GIARQRQAIVDGLR+SVLAFSE
Sbjct: 164 INAASRMREAASEKAEAEKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           +VPGTSSKDVMDMVLVTQYFDT+KEIGASSK+NSVFIPHGPGAV+DIASQIR+GLLQ N+
Sbjct: 224 SVPGTSSKDVMDMVLVTQYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1

 Score =  308 bits (790), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 170/179 (94%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRA VPKL+LD  FEQKN+IAK+VEEEL+KAM+ YGYEI+QTLI+DIEPD+ VKRAMNE
Sbjct: 104 VIRACVPKLNLDDVFEQKNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAAR+R+AA+EKAEAEKI+QIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVL F+ 
Sbjct: 164 INAAARMRVAASEKAEAEKIIQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAG 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQAN 241
           NVPGTS+KDV+DMV++TQYFDTM++IGA+SK+++VFIPHGPGAV D+A+QIR GLLQAN
Sbjct: 224 NVPGTSAKDVLDMVMMTQYFDTMRDIGATSKSSAVFIPHGPGAVSDVAAQIRNGLLQAN 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1

 Score =  243 bits (621), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 113/182 (62%), Positives = 149/182 (81%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           V+RA VP + LDA FEQK ++AK+V EELEK M  YGY I   L+VDI PD  V++AMNE
Sbjct: 106 VVRALVPMMTLDALFEQKGEVAKSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNE 165

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAA RL+LA+  K EAEKILQ+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L FS+
Sbjct: 166 INAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSD 225

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
            V GTS+K+VMD++++TQYFDT++++G SSK  +VF+PHGPG V+DI+ QIR G+++A A
Sbjct: 226 KVEGTSAKEVMDLIMITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAA 285

Query: 243 TT 244
           +T
Sbjct: 286 ST 287

Arabidopsis thaliana (taxid: 3702)

>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 139/170 (81%)

Query: 71  LDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 130
           ++LD  FEQK ++AK+V EELEK M  YGY I   L+VDI PD+ V+RAMNEINAA R++
Sbjct: 1   MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQ 60

Query: 131 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSK 190
           LA+  K EAEKILQ+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L FS  V GTS+K
Sbjct: 61  LASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAK 120

Query: 191 DVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 240
           +VMD++++TQYFDT+K++G SSK  +VFIPHGPG V+DI  QIR GL+++
Sbjct: 121 EVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMES 170

Lupinus polyphyllus (taxid: 3874)

>sp|O26788|Y692_METTH Uncharacterized protein MTH_692 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_692 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%)

Query: 64  IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123
           +R  +  L+LD T   +  I   + E L++A   +G  +V+  I  IEP   +  AM++ 
Sbjct: 114 LRNIIGDLELDQTLTSREMINTQLREVLDEATDKWGTRVVRVEIQRIEPPGDIVEAMSKQ 173

Query: 124 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN 183
             A R++ AA  +AE  K  +IKRAEG+ ++  L   G A   + + D  +   +A +E 
Sbjct: 174 MKAERMKRAAILEAEGYKQSEIKRAEGDKQAAILEAEGKAEAIKKVADANKYREIAIAEG 233

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

>sp|P72655|Y1128_SYNY3 Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1128 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 91/184 (49%), Gaps = 19/184 (10%)

Query: 53  EILTTSCLGLV---IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVD 109
           E L ++ + LV   IR+ + KL+LD TF  + +I + +  EL+ +   +G ++ +  + D
Sbjct: 102 ENLQSAMVNLVLTQIRSEIGKLELDQTFTARTEINELLLRELDISTDPWGVKVTRVELRD 161

Query: 110 IEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAI 169
           I P + V  +M     A R + AA   +E ++   I  A+G+A+++ L     A+++ AI
Sbjct: 162 IMPSKAVLDSMELQMTAERKKRAAILTSEGQRDSAINSAQGDAQARVLEAE--AKKKAAI 219

Query: 170 VD-------------GLRDSVLAFSENVPGTS-SKDVMDMVLVTQYFDTMKEIGASSKTN 215
           ++                +++   +E +   + +++ +  +L  QY +    IG+S  + 
Sbjct: 220 LNAEAEQQKKVLEAKATAEALSILTEKLSSDNHAREALQFLLAQQYLNMGTTIGSSDSSK 279

Query: 216 SVFI 219
            +F+
Sbjct: 280 VMFL 283

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P0DKS0|QMCA_WIGBR Protein QmcA OS=Wigglesworthia glossinidia brevipalpis GN=qmcA PE=3 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 17/178 (9%)

Query: 64  IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123
           +R  +  ++LD    Q+++I   +   +++A   +G +I +  I DI P   +  +MN  
Sbjct: 114 MRTVLGNMELDEMLSQRDNINIQLLNIVDEATKPWGVKITRVEIKDIRPPAELIESMNAQ 173

Query: 124 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE- 182
             A R + A   +AE  +   I +AEGE +S+ L   G  + +    +G R S    SE 
Sbjct: 174 MKAERTKRADILEAEGIRQAAILKAEGEKQSQILKAEGEKQSQILKAEGERQSEFLKSEA 233

Query: 183 -----NVPGTSSKDVMDMV-----------LVTQYFDTMKEIGASSKTNSVFIPHGPG 224
                     S+K + D +           +  +Y + +KE+G+S+ +  + +P   G
Sbjct: 234 KERDSEAEAYSTKIISDAISSGNMNSIKYFIAKKYTNAIKELGSSNSSKVIMLPLNTG 291

Wigglesworthia glossinidia brevipalpis (taxid: 36870)

>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 16/168 (9%)

Query: 64  IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123
           IR  +  ++LD    Q++ I   +   +++A + +G ++ +  I D+ P   +  +MN  
Sbjct: 116 IRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQ 175

Query: 124 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLG---------IARQRQAIVDGLR 174
             A R + A   +AE  +  +I +AEGE +S+ L   G          AR+R A  +   
Sbjct: 176 MKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARA 235

Query: 175 DSVLAFSENVPGTSSKDV--MDMVLVTQYFDTMKEIGASSKTNSVFIP 220
             ++  SE +   +S D+  ++  +  +Y + +++IG+SS +  V +P
Sbjct: 236 TKMV--SEAI---ASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMP 278

Shigella flexneri (taxid: 623)

>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 16/168 (9%)

Query: 64  IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123
           IR  +  ++LD    Q++ I   +   +++A + +G ++ +  I D+ P   +  +MN  
Sbjct: 116 IRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQ 175

Query: 124 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLG---------IARQRQAIVDGLR 174
             A R + A   +AE  +  +I +AEGE +S+ L   G          AR+R A  +   
Sbjct: 176 MKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARA 235

Query: 175 DSVLAFSENVPGTSSKDV--MDMVLVTQYFDTMKEIGASSKTNSVFIP 220
             ++  SE +   +S D+  ++  +  +Y + +++IG+SS +  V +P
Sbjct: 236 TKMV--SEAI---ASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVMMP 278

Identified as a multi-copy suppressor of an FtsH/HtpX protease double disruption mutant. May play a role in the quality control of integral membrane proteins.

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
255558218	285	Protein PPLZ12, putative [Ricinus commun	0.741	0.635	0.922	5e-93
449458019	284	PREDICTED: hypersensitive-induced respon	0.741	0.637	0.933	6e-93
356500513	286	PREDICTED: hypersensitive-induced respon	0.741	0.632	0.911	4e-92
374256021	239	putative hypersensitive-induced response	0.741	0.757	0.906	2e-90
57834178	286	hypersensitive-induced response protein	0.741	0.632	0.895	1e-89
356500499	289	PREDICTED: hypersensitive-induced respon	0.741	0.626	0.878	2e-89
48716660	287	putative hypersensitive-induced response	0.737	0.627	0.894	2e-89
14150732	284	hypersensitive-induced response protein	0.729	0.626	0.915	4e-89
115476296	284	Os08g0398400 [Oryza sativa Japonica Grou	0.729	0.626	0.915	4e-89
224140937	285	predicted protein [Populus trichocarpa]	0.737	0.631	0.911	8e-89

>gi|255558218|ref|XP_002520136.1| Protein PPLZ12, putative [Ricinus communis] gi|223540628|gb|EEF42191.1| Protein PPLZ12, putative [Ricinus communis]

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 167/181 (92%), Positives = 179/181 (98%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPKLDLD+ FEQKNDIAKAVE ELEKAMSHYG+EIVQTLIVDIEPDEHVKRAMNE
Sbjct: 104 VIRASVPKLDLDSAFEQKNDIAKAVENELEKAMSHYGFEIVQTLIVDIEPDEHVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAAR+R+AA+EKAEAEKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSE
Sbjct: 164 INAAARMRVAASEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGTSSKDVMDMVLVTQYFDTMKEIGASSK++SVFIPHGPGAV+DIA+QIR+GLLQAN+
Sbjct: 224 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVRDIATQIRDGLLQANS 283

Query: 243 T 243
           T
Sbjct: 284 T 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458019|ref|XP_004146745.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449458021|ref|XP_004146746.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|449520329|ref|XP_004167186.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449520331|ref|XP_004167187.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|34484310|gb|AAQ72788.1| hypersensitive-induced response protein [Cucumis sativus]

 Score =  346 bits (887), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 169/181 (93%), Positives = 178/181 (98%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPKLDLD+TFEQKNDIAKAVE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct: 104 VIRASVPKLDLDSTFEQKNDIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+AA EKAEAEKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAF+E
Sbjct: 164 INAAARLRVAATEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFAE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGT+SKDVMDMVLVTQYFDTMKEIGASSK+NSVFIPHGPGAVKDIASQIR+GLLQA+ 
Sbjct: 224 NVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSNSVFIPHGPGAVKDIASQIRDGLLQASQ 283

Query: 243 T 243
           T
Sbjct: 284 T 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500513|ref|XP_003519076.1| PREDICTED: hypersensitive-induced response protein 1-like [Glycine max]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 165/181 (91%), Positives = 178/181 (98%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPK++LDATFEQKN+IAKAVEEELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct: 104 VIRASVPKMELDATFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+AANEKAEAEKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSE
Sbjct: 164 INAAARLRVAANEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGT+SKD+MDMVL+TQYFDTMK+IGASSK+N+VFIPHGPGAV+D+ASQIR GLLQ NA
Sbjct: 224 NVPGTTSKDIMDMVLMTQYFDTMKDIGASSKSNAVFIPHGPGAVQDVASQIRNGLLQGNA 283

Query: 243 T 243
           T
Sbjct: 284 T 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374256021|gb|AEZ00872.1| putative hypersensitive-induced response protein, partial [Elaeis guineensis]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/181 (90%), Positives = 175/181 (96%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPKL+LD  FEQKNDIAKAVE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct: 57  VIRASVPKLNLDDVFEQKNDIAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNE 116

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+AANEKAEAEKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFS 
Sbjct: 117 INAAARLRVAANEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSV 176

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGT++KDVMDMVLVTQYFDTMKEIGASSK +SVFIPHGPGAV+DIA+QIR+GLLQA+ 
Sbjct: 177 NVPGTTAKDVMDMVLVTQYFDTMKEIGASSKASSVFIPHGPGAVRDIAAQIRDGLLQAST 236

Query: 243 T 243
           T
Sbjct: 237 T 237

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57834178|dbj|BAD86819.1| hypersensitive-induced response protein [Lotus japonicus]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 162/181 (89%), Positives = 174/181 (96%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPK++LD+ FEQKN+IAKAVEEELEKAMS YGYEIVQTLIVDIEPDE VK+AMNE
Sbjct: 104 VIRASVPKMELDSAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDERVKKAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+A  EKAEAEKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSE
Sbjct: 164 INAAARLRVATKEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGTSSKD+MDMVLVTQYFDTMKEIGAS+K+N+VFIPHGPGAVKDI SQIR+GLLQ NA
Sbjct: 224 NVPGTSSKDIMDMVLVTQYFDTMKEIGASAKSNAVFIPHGPGAVKDITSQIRDGLLQGNA 283

Query: 243 T 243
           T
Sbjct: 284 T 284

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500499|ref|XP_003519069.1| PREDICTED: hypersensitive-induced response protein 1-like [Glycine max]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/181 (87%), Positives = 176/181 (97%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPK++LDATFEQKNDIAK VEEELEKAMS YGYEIVQTLIVDIEPDE VKRAMNE
Sbjct: 107 VIRASVPKMELDATFEQKNDIAKTVEEELEKAMSAYGYEIVQTLIVDIEPDERVKRAMNE 166

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+A+NEKAEAEKILQIKRAEG+AESKYLAGLG+ARQRQAIVDGLRDSV+AFSE
Sbjct: 167 INAAARLRVASNEKAEAEKILQIKRAEGDAESKYLAGLGVARQRQAIVDGLRDSVIAFSE 226

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGT+SKD++DMVL+TQYFDTMK+IGASSK+N+VFIPHGPG+V D+ASQIR+GLLQ NA
Sbjct: 227 NVPGTTSKDILDMVLMTQYFDTMKDIGASSKSNAVFIPHGPGSVHDVASQIRDGLLQGNA 286

Query: 243 T 243
           T
Sbjct: 287 T 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48716660|dbj|BAD23328.1| putative hypersensitive-induced response protein [Oryza sativa Japonica Group]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/180 (89%), Positives = 175/180 (97%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRA+VPKL+LD  FEQKNDIAKAVE+ELEKAMS YGYEIVQTLI+DIEPD HVKRAMNE
Sbjct: 104 VIRATVPKLNLDDAFEQKNDIAKAVEDELEKAMSAYGYEIVQTLIIDIEPDVHVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+AANEKAEAEKILQIK+AEGEAESKYLAG+GIARQRQAIVDGLRDSVLAFSE
Sbjct: 164 INAAARLRVAANEKAEAEKILQIKKAEGEAESKYLAGVGIARQRQAIVDGLRDSVLAFSE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGT++KD+MDMVLVTQYFDTMKEIGASSK+ SVFIPHGPGAVKD+A+QIR+GLLQANA
Sbjct: 224 NVPGTTAKDIMDMVLVTQYFDTMKEIGASSKSTSVFIPHGPGAVKDVAAQIRDGLLQANA 283

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14150732|gb|AAK54610.1|AF374475_1 hypersensitive-induced response protein [Oryza sativa] gi|125561455|gb|EAZ06903.1| hypothetical protein OsI_29142 [Oryza sativa Indica Group]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 163/178 (91%), Positives = 174/178 (97%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPK++LD  FEQKN+IAKAVE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct: 104 VIRASVPKMNLDDAFEQKNEIAKAVEDELEKAMSTYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+AANEKAEAEKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSE
Sbjct: 164 INAAARLRVAANEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 240
           NVPGTS+KDVMDMVLVTQYFDTMKEIGASSK++SVFIPHGPGAVKDIA+QIR+G LQA
Sbjct: 224 NVPGTSAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281

Source: Oryza sativa

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476296|ref|NP_001061744.1| Os08g0398400 [Oryza sativa Japonica Group] gi|37805955|dbj|BAC99370.1| hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|37806020|dbj|BAC99432.1| hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|113623713|dbj|BAF23658.1| Os08g0398400 [Oryza sativa Japonica Group] gi|215694568|dbj|BAG89561.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640506|gb|EEE68638.1| hypothetical protein OsJ_27208 [Oryza sativa Japonica Group]

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 163/178 (91%), Positives = 174/178 (97%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPK++LD  FEQKN+IAKAVE+ELEKAMS YGYEIVQTLIVDIEPDEHVKRAMNE
Sbjct: 104 VIRASVPKMNLDDAFEQKNEIAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+AANEKAEAEKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSE
Sbjct: 164 INAAARLRVAANEKAEAEKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 240
           NVPGTS+KDVMDMVLVTQYFDTMKEIGASSK++SVFIPHGPGAVKDIA+QIR+G LQA
Sbjct: 224 NVPGTSAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140937|ref|XP_002323833.1| predicted protein [Populus trichocarpa] gi|118486431|gb|ABK95055.1| unknown [Populus trichocarpa] gi|222866835|gb|EEF03966.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 164/180 (91%), Positives = 173/180 (96%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           VIRASVPKL LD TFEQKNDIAKAVE ELEKAMS YGYEIVQTLIVDIEPD +VKRAMNE
Sbjct: 104 VIRASVPKLLLDDTFEQKNDIAKAVENELEKAMSAYGYEIVQTLIVDIEPDINVKRAMNE 163

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAAARLR+AANEKAEAEKILQIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVLAFSE
Sbjct: 164 INAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSE 223

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
           NVPGTS+KDVMDMVLVTQYFDTMKEIGASSK++SVFIPHGPGAV+DI SQIR+GLLQ N+
Sbjct: 224 NVPGTSAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVRDITSQIRDGLLQGNS 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2196749	286	AT1G69840 [Arabidopsis thalian	0.737	0.629	0.805	6.1e-71
TAIR|locus:2170698	286	HIR1 "HYPERSENSITIVE-INDUCED R	0.737	0.629	0.777	1.2e-67
TAIR|locus:2100242	285	HIR2 "hypersensitive induced r	0.733	0.628	0.703	3.3e-63
TAIR|locus:2153117	292	AT5G51570 [Arabidopsis thalian	0.745	0.623	0.538	1.2e-49
FB|FBgn0034936	369	CG2970 [Drosophila melanogaste	0.729	0.482	0.204	0.00012
UNIPROTKB|Q81JF5	321	BAS1928 "SPFH domain/Band 7 fa	0.639	0.485	0.220	0.00047
TIGR_CMR|BA_2075	321	BA_2075 "SPFH domain/Band 7 fa	0.639	0.485	0.220	0.00047
UNIPROTKB|Q8CX37	311	SO_4128 "Putative negative reg	0.631	0.495	0.251	0.00076
TIGR_CMR|SO_4128	311	SO_4128 "SPFH domain/Band 7 fa	0.631	0.495	0.251	0.00076

TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 145/180 (80%), Positives = 155/180 (86%)

Query:    63 VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNX 122
             VIRASVPKLDLD+TFEQKNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMN 
Sbjct:   104 VIRASVPKLDLDSTFEQKNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNE 163

Query:   123 XXXXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
                                 LQIKRAEGEAESKYL+G+GIARQRQAIVDGLR+SVLAFSE
Sbjct:   164 INAASRMREAASEKAEAEKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSE 223

Query:   183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
             +VPGTSSKDVMDMVLVTQYFDT+KEIGASSK+NSVFIPHGPGAV+DIASQIR+GLLQ N+
Sbjct:   224 SVPGTSSKDVMDMVLVTQYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 140/180 (77%), Positives = 152/180 (84%)

Query:    63 VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNX 122
             VIRASVPKL LD  FEQKNDIAKAVEEELEKAMS YGYEIVQTLIVDIEPDEHVKRAMN 
Sbjct:   104 VIRASVPKLLLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNE 163

Query:   123 XXXXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
                                 LQIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVL F+ 
Sbjct:   164 INAAARMRLAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAV 223

Query:   183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
             NVPGT++KDVMDMVLVTQYFDTMKEIGASSK+++VFIPHGPGAV+D+ASQIR+GLLQ ++
Sbjct:   224 NVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSS 283

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/179 (70%), Positives = 149/179 (83%)

Query:    63 VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNX 122
             VIRA VPKL+LD  FEQKN+IAK+VEEEL+KAM+ YGYEI+QTLI+DIEPD+ VKRAMN 
Sbjct:   104 VIRACVPKLNLDDVFEQKNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNE 163

Query:   123 XXXXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
                                 +QIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVL F+ 
Sbjct:   164 INAAARMRVAASEKAEAEKIIQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAG 223

Query:   183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQAN 241
             NVPGTS+KDV+DMV++TQYFDTM++IGA+SK+++VFIPHGPGAV D+A+QIR GLLQAN
Sbjct:   224 NVPGTSAKDVLDMVMMTQYFDTMRDIGATSKSSAVFIPHGPGAVSDVAAQIRNGLLQAN 282

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 98/182 (53%), Positives = 132/182 (72%)

Query:    63 VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNX 122
             V+RA VP + LDA FEQK ++AK+V EELEK M  YGY I   L+VDI PD  V++AMN 
Sbjct:   106 VVRALVPMMTLDALFEQKGEVAKSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNE 165

Query:   123 XXXXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
                                 LQ+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L FS+
Sbjct:   166 INAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSD 225

Query:   183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 242
              V GTS+K+VMD++++TQYFDT++++G SSK  +VF+PHGPG V+DI+ QIR G+++A A
Sbjct:   226 KVEGTSAKEVMDLIMITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAA 285

Query:   243 TT 244
             +T
Sbjct:   286 ST 287

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

FB|FBgn0034936 CG2970 [Drosophila melanogaster (taxid:7227)]

 Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
 Identities = 39/191 (20%), Positives = 75/191 (39%)

Query:    53 EILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEP 112
             E   T      +R+ + K+ +D  F ++  +  ++ + + KA   +G   ++  I DI  
Sbjct:   131 EFAITQLAQTTMRSELGKMSMDKVFRERESLNVSIVDSINKASEAWGIACLRYEIRDIRL 190

Query:   113 DEHVKRAMNXXXXXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAG-----------LG 161
                V  AM                       +I  AEG+ +S+ LA             G
Sbjct:   191 PTRVHEAMQMQVEAERRKRAAILESEGVREAEINIAEGKRKSRILASEAERQEHINKASG 250

Query:   162 IARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPH 221
              A    A+ D    S+LA ++++     ++   + L  QY    K++  ++  N++ +P 
Sbjct:   251 EAAAIIAVADARARSLLAIAKSLSHLDGQNAASLTLAEQYIGAFKKLAKTN--NTMILPS 308

Query:   222 GPGAVKDIASQ 232
              PG V    +Q
Sbjct:   309 NPGDVNGFVAQ 319

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)]

 Score = 111 (44.1 bits), Expect = 0.00047, P = 0.00047
 Identities = 38/172 (22%), Positives = 72/172 (41%)

Query:    64 IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNXX 123
             +R  + K++LD T   +  I+  +   L++A   +G  I +  +VDI P + V+ +M   
Sbjct:   118 MRQIIGKMELDETLSGREKISTEIRLALDEATEKWGVRIERVEVVDINPPKDVQASMEKQ 177

Query:   124 XXXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS------- 176
                                 ++ RAEGE +SK L   G    R    +G++++       
Sbjct:   178 MKAERNKRAIILEAEAAKQDKVLRAEGEKQSKILMAEGDKEARIREAEGIKEAKELEAQG 237

Query:   177 -VLAFSENVPGTSSK-------DVMDMVLVTQYFDTMKEIGASSKTNSVFIP 220
                A  E      ++       ++ + +L  + F+++ E+ A    N VFIP
Sbjct:   238 EARAIEEIAKAEQNRIELLREANLDERILAYKSFESLAEV-AKGPANKVFIP 288

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 111 (44.1 bits), Expect = 0.00047, P = 0.00047
 Identities = 38/172 (22%), Positives = 72/172 (41%)

Query:    64 IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNXX 123
             +R  + K++LD T   +  I+  +   L++A   +G  I +  +VDI P + V+ +M   
Sbjct:   118 MRQIIGKMELDETLSGREKISTEIRLALDEATEKWGVRIERVEVVDINPPKDVQASMEKQ 177

Query:   124 XXXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS------- 176
                                 ++ RAEGE +SK L   G    R    +G++++       
Sbjct:   178 MKAERNKRAIILEAEAAKQDKVLRAEGEKQSKILMAEGDKEARIREAEGIKEAKELEAQG 237

Query:   177 -VLAFSENVPGTSSK-------DVMDMVLVTQYFDTMKEIGASSKTNSVFIP 220
                A  E      ++       ++ + +L  + F+++ E+ A    N VFIP
Sbjct:   238 EARAIEEIAKAEQNRIELLREANLDERILAYKSFESLAEV-AKGPANKVFIP 288

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8CX37 SO_4128 "Putative negative regulator of univalent cation permeability" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 109 (43.4 bits), Expect = 0.00076, P = 0.00076
 Identities = 42/167 (25%), Positives = 72/167 (43%)

Query:    65 RASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNXXX 124
             R+ +  LDLD TFE+++ I+  V E L++A + +G  + +  I +I P E VK AM    
Sbjct:   128 RSVIGTLDLDRTFEERDVISAKVVEVLDQAGAMWGIRVHRYEIKNITPPETVKNAMEMQV 187

Query:   125 XXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFS--- 181
                                +I R+EG          G  ++R    +G  + +L  S   
Sbjct:   188 NAERERRALLAKSEGDKQSKINRSEGIKAETINRSEGEMQRRINEAEGKAEEILTLSRAT 247

Query:   182 -ENVPGTSS-------KDVMDMVLVTQYFDTMKEIGASSKTNSVFIP 220
              E++   +S        + + M L  QYF  +   G S K++ + +P
Sbjct:   248 AESIERLASVIAAPGGHNALRMQLGEQYFKQLD--GLSQKSSRIVLP 292

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4128 SO_4128 "SPFH domain/Band 7 family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 109 (43.4 bits), Expect = 0.00076, P = 0.00076
 Identities = 42/167 (25%), Positives = 72/167 (43%)

Query:    65 RASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNXXX 124
             R+ +  LDLD TFE+++ I+  V E L++A + +G  + +  I +I P E VK AM    
Sbjct:   128 RSVIGTLDLDRTFEERDVISAKVVEVLDQAGAMWGIRVHRYEIKNITPPETVKNAMEMQV 187

Query:   125 XXXXXXXXXXXXXXXXXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFS--- 181
                                +I R+EG          G  ++R    +G  + +L  S   
Sbjct:   188 NAERERRALLAKSEGDKQSKINRSEGIKAETINRSEGEMQRRINEAEGKAEEILTLSRAT 247

Query:   182 -ENVPGTSS-------KDVMDMVLVTQYFDTMKEIGASSKTNSVFIP 220
              E++   +S        + + M L  QYF  +   G S K++ + +P
Sbjct:   248 AESIERLASVIAAPGGHNALRMQLGEQYFKQLD--GLSQKSSRIVLP 292


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      244       223   0.00098  112 3  11 22  0.38    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.71u 0.11s 17.82t   Elapsed:  00:00:00
  Total cpu time:  17.71u 0.11s 17.82t   Elapsed:  00:00:00
  Start:  Thu May  9 18:34:54 2013   End:  Thu May  9 18:34:54 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FM19	HIR1_ARATH	No assigned EC number	0.8791	0.7459	0.6363	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4346849	hypersensitive-induced response protein, putative, expressed (287 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4337461	harpin-induced protein 1 domain containing protein, expressed (205 aa)							•		0.669

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd03407	262	cd03407, Band_7_4, A subgroup of the band 7 domain	1e-87
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	4e-13
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	7e-13
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	6e-10
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	1e-09
smart00244	160	smart00244, PHB, prohibitin homologues	3e-07
cd03404	266	cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma	3e-06
cd03408	207	cd03408, Band_7_5, A subgroup of the band 7 domain	4e-04

>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score =  260 bits (666), Expect = 1e-87
 Identities = 112/172 (65%), Positives = 135/172 (78%), Gaps = 1/172 (0%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
           V+RA +PKL LD  FEQK++IAKAVEEEL +AMS YG+EIV TLI DI+PD  VKRAMNE
Sbjct: 92  VLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNE 151

Query: 123 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182
           INAA R R+AA  KAEAEKI  IK AE +AE+K L G+G A QRQAI DGLR+S+L+ ++
Sbjct: 152 INAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLAD 211

Query: 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIR 234
            VPG ++KDVMD++LV QYFDT+K  G SS T  VF PHGPG  +DI +QIR
Sbjct: 212 AVPGMTAKDVMDLLLVNQYFDTLKAYGRSSST-VVFRPHGPGGAQDIYAQIR 262

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 67.1 bits (164), Expect = 4e-13
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 5/173 (2%)

Query: 53  EILTTSCLGLVIRASVPKLDLDATF-EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 111
           E      +   +R+ + ++ LD    E++ +I   + E L++A   +G ++V   I DI+
Sbjct: 111 EAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDID 170

Query: 112 PDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVD 171
           P E V+ AM +  AA R + A   +AE E    I RAEGEAE+  +       + + I  
Sbjct: 171 PPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEA-EAEAEVIAR 229

Query: 172 GLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPG 224
              D+    +  +            L  +Y + + EI  +  +  V +P+  G
Sbjct: 230 AEADAAKIIAAALREA---PAAPQALAQRYLEELLEIALAGNSKVVVVPNSAG 279

Length = 291

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 65.2 bits (160), Expect = 7e-13
 Identities = 24/107 (22%), Positives = 51/107 (47%)

Query: 64  IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123
           +R+ + K++LD    ++ +I   + E L++A   +G ++ +  I DI   + ++ AM + 
Sbjct: 94  LRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQ 153

Query: 124 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIV 170
             A R + A   +AE E+   I  AE   ++         R+ + + 
Sbjct: 154 AEAEREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLE 200

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 55.0 bits (133), Expect = 6e-10
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
            +R+ + K+ LD   E +++IA  V E L++ +  YG E+V   I DI+P E V+ AM +
Sbjct: 60  ALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMED 119

Query: 123 IN 124
             
Sbjct: 120 RQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 63  VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 122
            +R  + +  LD     + +IA+ V+E L++ +  YG EI    I DI+P   +  A+ E
Sbjct: 98  ALREVIARYTLDELLSNREEIAQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEE 157

Query: 123 INAAARLRL-AANEKAEAEK 141
             AA +    A  E+AEAE 
Sbjct: 158 KQAAEQEAEEAEIERAEAEA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 63  VIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMN 121
            +R+ + K  LD     Q+  I++ + EEL +A   +G ++    I DI   E +K AM 
Sbjct: 98  TLRSVIGKRTLDELLTDQREKISENIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAME 157

Query: 122 EIN 124
              
Sbjct: 158 AQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 34/162 (20%)

Query: 63  VIRASVPKLDLDATF-EQKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRA 119
            +R  V +  LD    E + +IA+ V E L+  +  Y  G EIV   + D +P E V+ A
Sbjct: 122 AMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDA 181

Query: 120 MNEINAAA--RLRL------AANE-----KAEAEKILQIKRAEGEAESKYLAGLGIARQR 166
            +++N A   R RL       ANE     + EA +I+Q   AE   E       G A + 
Sbjct: 182 FDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQE--AEAYKEEVIAEAQGEAARF 239

Query: 167 QAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEI 208
           ++++   +              + DV    L   Y +TM+E+
Sbjct: 240 ESLLAEYK-------------KAPDVTRERL---YLETMEEV 265

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 266

>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 50  SLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVD 109
           SL+ ++  +    +  + +  + L A  +   +++KAV E L    + +G E+V   I  
Sbjct: 136 SLRALIVAALSSALSESGLAVMLLAANRD---ELSKAVREALAPWFASFGLELVSVYIES 192

Query: 110 IEPDEHVKRAMNE 122
           I   + V++ +++
Sbjct: 193 ISYPDEVQKLIDK 205

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	99.98
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	99.97
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	99.97
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	99.96
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	99.94
KOG2621	288	consensus Prohibitins and stomatins of the PID sup	99.93
KOG3090	290	consensus Prohibitin-like protein [Posttranslation	99.9
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	99.84
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	99.84
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	99.84
KOG3083	271	consensus Prohibitin [Posttranslational modificati	99.8
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.58
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.57
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.36
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.31
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	99.3
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.21
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.18
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	98.73
KOG2962	322	consensus Prohibitin-related membrane protease sub	98.62
PF13421	211	Band_7_1: SPFH domain-Band 7 family	97.98
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	97.65
PTZ00491	850	major vault protein; Provisional	97.41
PRK11029	334	FtsH protease regulator HflC; Provisional	97.32
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	97.27
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	97.16
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	97.04
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	96.89
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	96.88
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	96.75
PRK10930	419	FtsH protease regulator HflK; Provisional	95.93
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	94.63
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	93.66
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	91.25
COG1580	159	FliL Flagellar basal body-associated protein [Cell	90.32
PRK01558	198	V-type ATP synthase subunit E; Provisional	87.98
KOG3083	271	consensus Prohibitin [Posttranslational modificati	87.53
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	86.35
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	85.79
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	85.17
PTZ00491	850	major vault protein; Provisional	84.95
PRK01558	198	V-type ATP synthase subunit E; Provisional	84.09
PRK02292	188	V-type ATP synthase subunit E; Provisional	81.02
PRK02292	188	V-type ATP synthase subunit E; Provisional	80.83
PF03748	99	FliL: Flagellar basal body-associated protein FliL	80.28
PLN03086	567	PRLI-interacting factor K; Provisional	80.01

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=4.3e-39  Score=285.81  Aligned_cols=221  Identities=53%  Similarity=0.752  Sum_probs=200.0

Q ss_pred             hhhhhhhccCCc---cccccccc---cc---------------ceEEEEeecc--cceeeccchHHHHHhhHHHHHHHhh
Q 026063           11 MCLLMWLLPFNT---EPWQRRLQ---MP---------------FISSAILDRR--SKRMSLMSLQEILTTSCLGLVIRAS   67 (244)
Q Consensus        11 ~~~l~~~~p~~~---~~~~~~l~---~~---------------~~~~~i~d~~--~~~~~v~~~~~~i~~~~v~~~lR~v   67 (244)
                      -.||+|++||..   +.++.|++   ++               .+.|+|.|+.  +++|++.|+...|. +.+++++|++
T Consensus        18 ~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~~~~~~l~-~~~~s~lR~v   96 (262)
T cd03407          18 WPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLGNPEEQIQ-SYVFDVLRAR   96 (262)
T ss_pred             CCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcCCHHHHHH-HHHHHHHHHH
Confidence            469999999972   33455443   22               4467888877  89999999888777 8999999999


Q ss_pred             cCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063           68 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKR  147 (244)
Q Consensus        68 ig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~  147 (244)
                      +|++++++++++|+.|+..|.+.+++.+++|||.|.+|.|++|+||+++++||++++.|+|++++.+.+||+++.+.+.+
T Consensus        97 ig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~  176 (262)
T cd03407          97 IPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKA  176 (262)
T ss_pred             hcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 026063          148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVK  227 (244)
Q Consensus       148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~~~~~~~  227 (244)
                      |+|++++.+++|+|+|++.++.|+|+++++..+.+++...++++++++++..+|+++|++++++++ +++|+|.+++++.
T Consensus       177 A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~~-kviv~p~~~~~~~  255 (262)
T cd03407         177 AEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSS-TVVFRPHGPGGAQ  255 (262)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCCC-CEEEecCCCccHH
Confidence            999999999999999999999999999999999998866567899999999999999999996555 8899999999988


Q ss_pred             HHHHHH
Q 026063          228 DIASQI  233 (244)
Q Consensus       228 ~~~~~~  233 (244)
                      +++..|
T Consensus       256 ~~~~~~  261 (262)
T cd03407         256 DIYAQI  261 (262)
T ss_pred             HHHHhc
Confidence            887665

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=8.3e-39  Score=277.25  Aligned_cols=229  Identities=36%  Similarity=0.545  Sum_probs=203.4

Q ss_pred             hhhhhhccCCccc----cccccccc------------------ceEEEEeeccc--ceeeccchHHHHHhhHHHHHHHhh
Q 026063           12 CLLMWLLPFNTEP----WQRRLQMP------------------FISSAILDRRS--KRMSLMSLQEILTTSCLGLVIRAS   67 (244)
Q Consensus        12 ~~l~~~~p~~~~~----~~~~l~~~------------------~~~~~i~d~~~--~~~~v~~~~~~i~~~~v~~~lR~v   67 (244)
                      -||.||.||+.+.    -.++++++                  .++++|+||.+  ++|.|+|+..+|. .++++++|+.
T Consensus        32 PG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~dAsYgvenp~~aI~-qlaqttmRse  110 (301)
T KOG2620|consen   32 PGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADDASYGVENPEYAIQ-QLAQTTMRSE  110 (301)
T ss_pred             CcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecccccccccccCCHHHHHH-HHHHHHHHHh
Confidence            3899999997221    12233322                  34569999999  9999999999999 6999999999


Q ss_pred             cCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063           68 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKR  147 (244)
Q Consensus        68 ig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~  147 (244)
                      +|++|||.+|.+|+.|+..|.+.+++.++.||+.|.+.+|+||.||+.+.+||+.+.+|||.++|.+.++||+|+++|.+
T Consensus       111 vgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEger~~~Inr  190 (301)
T KOG2620|consen  111 VGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQINR  190 (301)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCC-----------CCchhHHHHHHHHHHHHHHHHHhcCCCCcE
Q 026063          148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG-----------TSSKDVMDMVLVTQYFDTMKEIGASSKTNS  216 (244)
Q Consensus       148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~-----------~~~~~~~~~~l~~ryleal~~i~~~~~~~~  216 (244)
                      |||++++.++.++|.+..+...++|+++++-.++++..+           .+.-++++|+...+|+.++.+++  +.+|+
T Consensus       191 AEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~la--k~snt  268 (301)
T KOG2620|consen  191 AEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLA--KKSNT  268 (301)
T ss_pred             hcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhc--ccCce
Confidence            999999999999999999999999999998888776543           23456678889999999999998  45678


Q ss_pred             EEecCCCCchhHHHHHHHHHHHhhhhc
Q 026063          217 VFIPHGPGAVKDIASQIREGLLQANAT  243 (244)
Q Consensus       217 ivlp~~~~~~~~~~~~~~~~~~~~~~~  243 (244)
                      +|||.+||++.++..+++.++.++..+
T Consensus       269 v~lP~~pg~v~~mvaQa~~~~~~~s~~  295 (301)
T KOG2620|consen  269 VFLPHGPGDVRDMVAQALNGYKQLSNA  295 (301)
T ss_pred             EEecCCCCcHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999998887654

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=8.2e-33  Score=252.90  Aligned_cols=214  Identities=15%  Similarity=0.203  Sum_probs=179.9

Q ss_pred             hhhhhhhccCC--ccccccccc---cc----------------ceEEEEeecccceeecc--chHH--HHHhhHHHHHHH
Q 026063           11 MCLLMWLLPFN--TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLM--SLQE--ILTTSCLGLVIR   65 (244)
Q Consensus        11 ~~~l~~~~p~~--~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~--~~~~--~i~~~~v~~~lR   65 (244)
                      --||+|.+||.  ...++.|++   .+                ++.|+|.||.+++|.+.  |+..  ....+.+++++|
T Consensus        49 ~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR  128 (334)
T PRK11029         49 APGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLR  128 (334)
T ss_pred             CCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            46999999997  245555543   21                34678888887766532  3322  233467899999


Q ss_pred             hhcCCCCHHHHHh-hHHHHHHHHHHHHHHH---------------------------------------HhhcCcEEEEE
Q 026063           66 ASVPKLDLDATFE-QKNDIAKAVEEELEKA---------------------------------------MSHYGYEIVQT  105 (244)
Q Consensus        66 ~vig~~tldeil~-~R~~i~~~I~~~l~~~---------------------------------------~~~~GI~V~~V  105 (244)
                      +++|+++++++++ +|++|+.++++.+++.                                       +.+|||+|.+|
T Consensus       129 ~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V  208 (334)
T PRK11029        129 SEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDV  208 (334)
T ss_pred             HHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhcccccccccccccccccccCCcEEEEE
Confidence            9999999999998 7999999999999864                                       47899999999


Q ss_pred             EeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCC
Q 026063          106 LIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVP  185 (244)
Q Consensus       106 ~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~  185 (244)
                      +|++++||+++.++|+.+|.|||+++|...+|||++.+..++++|+.++.++.|+|++++..++|+|++++++.++++|.
T Consensus       209 ~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~  288 (334)
T PRK11029        209 RIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS  288 (334)
T ss_pred             EEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHH
Q 026063          186 GTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIR  234 (244)
Q Consensus       186 ~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~~~~~~~~~~~~~~  234 (244)
                      .  +|   +++.+++||++|+++++ ++++++|||.  +  .+++..++
T Consensus       289 ~--~p---~~~~~~~~lea~~~~~~-~~~~~~vl~~--~--~~~~~~l~  327 (334)
T PRK11029        289 Q--DP---DFYAFIRSLRAYENSFS-GNQDVMVLSP--D--SDFFRYMK  327 (334)
T ss_pred             c--CH---HHHHHHHHHHHHHHHhc-CCCcEEEECC--C--hHHHHHhh
Confidence            3  33   67778999999999983 4457888984  3  36777775

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=6.7e-32  Score=239.04  Aligned_cols=204  Identities=18%  Similarity=0.215  Sum_probs=178.9

Q ss_pred             hhhhhhhccCC--cccccccc-c-c----c-------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcC
Q 026063           11 MCLLMWLLPFN--TEPWQRRL-Q-M----P-------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVP   69 (244)
Q Consensus        11 ~~~l~~~~p~~--~~~~~~~l-~-~----~-------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig   69 (244)
                      -.||+|++||.  .+.++.+. + .    +             .+.|+|.|+.+++|++.|+...+. +.+++++|+++|
T Consensus        23 ~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~~~~~~~~~l~-~~~~s~lR~vig  101 (261)
T TIGR01933        23 DPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYLFSVENPEDSLR-QATDSALRGVIG  101 (261)
T ss_pred             CCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHHHhCCCHHHHHH-HHHHHHHHHHHh
Confidence            46999999996  23344331 1 1    1             346799999999999999888877 899999999999


Q ss_pred             CCCHHHHHh-hHHHHHHHHHHHHHHHHhhc--CcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063           70 KLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIK  146 (244)
Q Consensus        70 ~~tldeil~-~R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~  146 (244)
                      +++++++++ +|++|+..|.+.+++.++.|  ||.|.+|.|++++||+++.++|++++.|++++++.+.+||++++..+.
T Consensus       102 ~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~  181 (261)
T TIGR01933       102 DSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVP  181 (261)
T ss_pred             hCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 89999999999999999976  999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecC
Q 026063          147 RAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPH  221 (244)
Q Consensus       147 ~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~  221 (244)
                      +|+|++++.++.|+|++++..++|+|+++++..++++|..  +|   +++.+++||++|++++ ++++++++++.
T Consensus       182 ~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~--~p---~~~~~~~~le~~~~~~-~~~~~~~~~~~  250 (261)
T TIGR01933       182 KARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK--AP---DVTRERLYLETMEKVL-SNTRKVLLDDK  250 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--Ch---HHHHHHHHHHHHHHHH-ccCCeEEEECC
Confidence            9999999999999999999999999999999999999863  45   5556788999999998 44556677763

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=1.7e-31  Score=243.31  Aligned_cols=211  Identities=13%  Similarity=0.184  Sum_probs=177.0

Q ss_pred             hhhhhhccCC--ccccccccc---cc----------------ceEEEEeecccceeecc--chH--HHHHhhHHHHHHHh
Q 026063           12 CLLMWLLPFN--TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLM--SLQ--EILTTSCLGLVIRA   66 (244)
Q Consensus        12 ~~l~~~~p~~--~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~--~~~--~~i~~~~v~~~lR~   66 (244)
                      -||+|.+||.  .+.++.|++   .+                .+.|+|.|+.++++++.  ++.  +....+.+++++|+
T Consensus        50 pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~  129 (317)
T TIGR01932        50 PGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRS  129 (317)
T ss_pred             CCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            6999999996  355666643   11                34568888888887765  332  23344789999999


Q ss_pred             hcCCCCHHHHHh-hHHHH-----------------------------HHHHHHHHHHHHhhcCcEEEEEEeeeccchHHH
Q 026063           67 SVPKLDLDATFE-QKNDI-----------------------------AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHV  116 (244)
Q Consensus        67 vig~~tldeil~-~R~~i-----------------------------~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i  116 (244)
                      ++|+++++++++ +|++|                             ...|.+.+.+.+.+|||.|.+|.|++++||+++
T Consensus       130 vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v  209 (317)
T TIGR01932       130 EIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDEL  209 (317)
T ss_pred             HHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHH
Confidence            999999999998 46666                             557888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHH
Q 026063          117 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV  196 (244)
Q Consensus       117 ~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~  196 (244)
                      +++|++++.|+|++.|...+++|++.+..+.|+|++++.++.|+|+|++..++|+|++++++.++++|..  +|   +++
T Consensus       210 ~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~--~p---~~~  284 (317)
T TIGR01932       210 SESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGK--DP---EFY  284 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcc--CH---HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999974  44   555


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHH
Q 026063          197 LVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQ  232 (244)
Q Consensus       197 l~~ryleal~~i~~~~~~~~ivlp~~~~~~~~~~~~  232 (244)
                      .+++||++|++++ +++++++|||.+    +++|..
T Consensus       285 ~~~~~le~~~~~~-~~~~~~~vl~~~----~~~~~~  315 (317)
T TIGR01932       285 SFWRSLEAYEKSF-KDNQDEKVLSTD----SEFFQY  315 (317)
T ss_pred             HHHHHHHHHHHHh-CCCCCEEEECCC----cHHHHh
Confidence            5788999999998 456678899853    466654

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=99.98  E-value=3.5e-31  Score=248.37  Aligned_cols=202  Identities=19%  Similarity=0.216  Sum_probs=174.9

Q ss_pred             hhhhhhccCCc--cccccccc--c-----------------cceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCC
Q 026063           12 CLLMWLLPFNT--EPWQRRLQ--M-----------------PFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPK   70 (244)
Q Consensus        12 ~~l~~~~p~~~--~~~~~~l~--~-----------------~~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~   70 (244)
                      .||+|.+||+.  ..++.+..  +                 -+++|+|.||.+++|+|.|++..|. +.++++||+++|+
T Consensus       120 PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf~v~~~~~~L~-~~~~SAlR~vIG~  198 (419)
T PRK10930        120 PGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSPDDSLR-QATDSALRGVIGK  198 (419)
T ss_pred             CceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHHhccCHHHHHH-HHHHHHHHHHHcc
Confidence            49999999972  33333221  1                 0446899999999999999988887 7999999999999


Q ss_pred             CCHHHHHh-hHHHHHHHHHHHHHHHHhhc--CcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063           71 LDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKR  147 (244)
Q Consensus        71 ~tldeil~-~R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~  147 (244)
                      ++++++++ +|++|+..|++.+++.++.|  ||+|.+|+|++++||+++++||++.+.|++++++.+.+||++++..+.+
T Consensus       199 ~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~  278 (419)
T PRK10930        199 YTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPR  278 (419)
T ss_pred             CCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 69999999999999999997  9999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecC
Q 026063          148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPH  221 (244)
Q Consensus       148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~  221 (244)
                      |+|++++.+.+|+|++++.+++|+|+++++..+..+|..  +|+.+.   ...|||||+++++  +.+.||+..
T Consensus       279 A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~k--aP~vtr---~RlYletme~vl~--~~~kvivd~  345 (419)
T PRK10930        279 ANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKA--APEITR---ERLYIETMEKVLG--HTRKVLVND  345 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--CHHHHH---HHHHHHHHHHHHc--cCCEEEEeC
Confidence            999999999999999999999999999887777778863  676665   4559999999983  334455543

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=99.97  E-value=1.7e-30  Score=227.15  Aligned_cols=193  Identities=16%  Similarity=0.196  Sum_probs=167.9

Q ss_pred             hhhhhhhccCC--ccccccccc---cc----------------ceEEEEeecccceeeccchHH---HHHhhHHHHHHHh
Q 026063           11 MCLLMWLLPFN--TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLMSLQE---ILTTSCLGLVIRA   66 (244)
Q Consensus        11 ~~~l~~~~p~~--~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~~~~~---~i~~~~v~~~lR~   66 (244)
                      --||+|.+||.  .+.++.|++   ++                .+.|+|.|+.++++++.+..+   .++.+.+++++|+
T Consensus        24 ~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~~~i~~~~~~~lr~  103 (242)
T cd03405          24 EPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSALRA  103 (242)
T ss_pred             CCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            36899999997  244555543   11                335678788777777766542   3344789999999


Q ss_pred             hcCCCCHHHHHhh-HHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063           67 SVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQI  145 (244)
Q Consensus        67 vig~~tldeil~~-R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i  145 (244)
                      ++|++++++++++ |++|+..|.+.+++.+++|||.|.+|.|++|+||+++.++|++++.|+|++.++..+|+|++++.+
T Consensus       104 vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~  183 (242)
T cd03405         104 EFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAER  183 (242)
T ss_pred             HHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999997 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 026063          146 KRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEI  208 (244)
Q Consensus       146 ~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i  208 (244)
                      +.|++++++.++.|+|+|++.+++|+|+++++++++++|..  +|+   ++.++++|++|+.+
T Consensus       184 ~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~--~p~---~~~~~~~l~~~~~~  241 (242)
T cd03405         184 IRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGK--DPE---FYAFYRSLEAYRNS  241 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CHH---HHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999974  554   45578899999865

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.2e-30  Score=230.58  Aligned_cols=188  Identities=23%  Similarity=0.360  Sum_probs=168.7

Q ss_pred             ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHH-HHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063           33 FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKN-DIAKAVEEELEKAMSHYGYEIVQTLIVDIE  111 (244)
Q Consensus        33 ~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~-~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~  111 (244)
                      .+.|+|.|+.+++|.+.+++..+. ..++++||+++|++++++++++|+ .|+..+.+.+++.+++|||.|.+|+|++++
T Consensus        92 ~v~~rv~d~~~~~~~v~~~~~~l~-~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~  170 (291)
T COG0330          92 VVQYRVTDPQKAVYNVENAEAALR-QLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDID  170 (291)
T ss_pred             EEEEEEcCHHHHHHhcCCHHHHHH-HHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecC
Confidence            346688899999999999888888 799999999999999999999887 999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchh
Q 026063          112 PDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKD  191 (244)
Q Consensus       112 ~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~  191 (244)
                      ||+++..+|+++|.|||++++.+.+|||++++.+++|+|++++.++.+||++++ +..++|++++++.+++++..  .+ 
T Consensus       171 ~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~--~~-  246 (291)
T COG0330         171 PPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE--AP-  246 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc--cc-
Confidence            999999999999999999999999999999999999999999999999999998 66666666788999998864  23 


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCc
Q 026063          192 VMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGA  225 (244)
Q Consensus       192 ~~~~~l~~ryleal~~i~~~~~~~~ivlp~~~~~  225 (244)
                      ...++.+++|++++.+++.+++++++++|.+.++
T Consensus       247 ~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~  280 (291)
T COG0330         247 AAPQALAQRYLEELLEIALAGNSKVVVVPNSAGG  280 (291)
T ss_pred             chhHHHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence            3467778999999999986667788888876554

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=99.96  E-value=6.5e-29  Score=220.39  Aligned_cols=170  Identities=24%  Similarity=0.278  Sum_probs=157.7

Q ss_pred             eEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhh-HHHHHHHHHHHHHHHHhhc--CcEEEEEEeeec
Q 026063           34 ISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTLIVDI  110 (244)
Q Consensus        34 ~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~-R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i  110 (244)
                      +.|+|.|+.+++|.+.|+...+. +.+++++|+++|++++++++++ |++|+..|++.+++.++.|  ||.|.+|.|+++
T Consensus        94 v~yrI~d~~~~~~~~~~~~~~l~-~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i  172 (266)
T cd03404          94 VQYRISDPYDYLFNVRDPEGTLR-QAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDA  172 (266)
T ss_pred             EEEEECCHHHHHhhCCCHHHHHH-HHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeC
Confidence            36799999999999999888777 8999999999999999999996 9999999999999999977  999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCch
Q 026063          111 EPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSK  190 (244)
Q Consensus       111 ~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~  190 (244)
                      +||+++.++|++++.|++++++.+.+|++++++.+.+|+|++++.++.|+|++++.++.|+|+++++.+++++|..  +|
T Consensus       173 ~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~--~~  250 (266)
T cd03404         173 DPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK--AP  250 (266)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh--Ch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999974  55


Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q 026063          191 DVMDMVLVTQYFDTMKEIG  209 (244)
Q Consensus       191 ~~~~~~l~~ryleal~~i~  209 (244)
                      +.+   .++.|+++|++++
T Consensus       251 ~~~---~~~~~~~~~~~~~  266 (266)
T cd03404         251 DVT---RERLYLETMEEVL  266 (266)
T ss_pred             HHH---HHHHHHHHHHHhC
Confidence            554   4566999999863

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=99.94  E-value=2.2e-25  Score=191.44  Aligned_cols=173  Identities=21%  Similarity=0.281  Sum_probs=141.1

Q ss_pred             hhhhhhhccCC--c-cccccccc---cc----------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhc
Q 026063           11 MCLLMWLLPFN--T-EPWQRRLQ---MP----------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASV   68 (244)
Q Consensus        11 ~~~l~~~~p~~--~-~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vi   68 (244)
                      --||+|++||.  . +.++.|++   ++                .+.|+|.||.+++|.+.|+...+. +.+++++|+++
T Consensus        20 ~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~-~~~~~~lr~~i   98 (215)
T cd03403          20 GPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYGVEDYRYAIS-QLAQTTLRSVI   98 (215)
T ss_pred             CCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhcCCCHHHHHH-HHHHHHHHHHH
Confidence            46999999997  3 55666654   21                346788899999999999988777 79999999999


Q ss_pred             CCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026063           69 PKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRA  148 (244)
Q Consensus        69 g~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~A  148 (244)
                      |++++++++++|+.|+..|++.+++.+.+|||.|.+|.|+++++|+++.++|+.++.|+++++|.+.+|+|++++.++.|
T Consensus        99 ~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~a  178 (215)
T cd03403          99 GKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLA  178 (215)
T ss_pred             ccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988887777777776666665


Q ss_pred             hhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEec
Q 026063          149 EGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIP  220 (244)
Q Consensus       149 eaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp  220 (244)
                      +|++++..                                ++.+    +.++++++++.++++++.++++.|
T Consensus       179 ea~~~~~~--------------------------------~~~~----~~~~~~e~~~~~~~~~~~~~~~~~  214 (215)
T cd03403         179 EAAKQAAI--------------------------------NPAA----LQLRELETLEEIAKEAASTVVFPA  214 (215)
T ss_pred             HHHHHHcc--------------------------------CHHH----HHHHHHHHHHHHHhccCCeEEeeC
Confidence            55543311                                2223    368899999999976665444433

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=99.93  E-value=2.5e-26  Score=201.37  Aligned_cols=178  Identities=21%  Similarity=0.248  Sum_probs=142.3

Q ss_pred             chhhhhhhhccCC--ccccccccc---cc----------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhh
Q 026063            9 RTMCLLMWLLPFN--TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRAS   67 (244)
Q Consensus         9 ~~~~~l~~~~p~~--~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~v   67 (244)
                      ..-=|++|++||+  +++++.|++   +|                .+.++|.||.-+..+|.|...+.. -+.+++||++
T Consensus        77 ~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi~sv~~V~Da~~sTr-~lAqttLrn~  155 (288)
T KOG2621|consen   77 ARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAVNNVGDADNATR-LLAQTTLRNY  155 (288)
T ss_pred             CCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHHHHHHhccCHHHHHH-HHHHHHHHHH
Confidence            4456999999998  686666655   33                223366677777777777666666 6899999999


Q ss_pred             cCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063           68 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKR  147 (244)
Q Consensus        68 ig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~  147 (244)
                      +|+.++.|++++|+.|..+++..+++.+..|||+|++|+|+||.+|.+.+++|....+|.|+.+|++..||||+.+    
T Consensus       156 lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Akviaaege~~a----  231 (288)
T KOG2621|consen  156 LGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAKVIAAEGEKKA----  231 (288)
T ss_pred             HccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhhHHHHHhhhHH----
Confidence            9999999999999999999999999999999999999999999999999999999999999988888887777653    


Q ss_pred             hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCc
Q 026063          148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGA  225 (244)
Q Consensus       148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~~~~~  225 (244)
                                            .++++++...+++      +|.++    ++|||++|.+++ +.+++|+++|. |.+
T Consensus       232 ----------------------s~al~~aa~v~~~------sp~al----qLryLqtl~sia-~e~~~tivfP~-p~e  275 (288)
T KOG2621|consen  232 ----------------------SEALKEAADVISE------SPIAL----QLRYLQTLNSIA-AEKNSTIVFPL-PID  275 (288)
T ss_pred             ----------------------HHHHHHhhccccC------Cchhh----hhhhhhcchhhh-cCCCCCcccCC-CHH
Confidence                                  2344444333332      45554    689999999998 67788999997 443

>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.4e-23  Score=179.02  Aligned_cols=185  Identities=22%  Similarity=0.331  Sum_probs=145.2

Q ss_pred             CCCcCCCcchhhhhhhhccCCcccccccccccceEEEEeecccc-----eee--ccchHHHHHhhHHHHHHHhhcCCCCH
Q 026063            1 MFDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSK-----RMS--LMSLQEILTTSCLGLVIRASVPKLDL   73 (244)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~i~d~~~~-----~~~--v~~~~~~i~~~~v~~~lR~vig~~tl   73 (244)
                      +||||++||.+.|++     +++    +|||..|.+++++++..     .|+  =+|+.+.+..++++++|++++++++.
T Consensus        77 iYDvRarP~~i~S~t-----Gsk----DLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNA  147 (290)
T KOG3090|consen   77 IYDVRARPRLISSPT-----GSK----DLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNA  147 (290)
T ss_pred             eeeeccCcccccCCC-----CCc----ceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhH
Confidence            699999999999999     977    99999999999997731     111  12344444448999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 026063           74 DATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLA---ANEKAEAEKILQIKRAEG  150 (244)
Q Consensus        74 deil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A---~~~~Aegek~a~i~~Aea  150 (244)
                      ++++++|+.+...|++.+.+...+|.|.++||.|+.+.+++++..|++.+..|.++.+.   -+.+|+.+++..+++|+|
T Consensus       148 SqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqG  227 (290)
T KOG3090|consen  148 SQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQG  227 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999998888777654   245677777766666666


Q ss_pred             HHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEecCC
Q 026063          151 EAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA--SSKTNSVFIPHG  222 (244)
Q Consensus       151 eaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~--~~~~~~ivlp~~  222 (244)
                      |++++.+.                      .+|++  ++|..+    .+|.+++-++|+.  +.+.|.++|+++
T Consensus       228 EaksAqli----------------------GeAi~--nn~~fi----~Lrki~aAr~IA~tia~S~NkvyL~~~  273 (290)
T KOG3090|consen  228 EAKSAQLI----------------------GEAIK--NNPAFI----TLRKIEAAREIAQTIASSANKVYLSSD  273 (290)
T ss_pred             chHHHHHH----------------------HHHHh--CCccce----eehhHHHHHHHHHHHhcCCCeEEeccc
Confidence            65554433                      33332  244433    5788999888874  355677888853

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.84  E-value=4.8e-20  Score=165.20  Aligned_cols=146  Identities=21%  Similarity=0.197  Sum_probs=117.9

Q ss_pred             hhhhhhccCCc--cccccccc---c---cc-------eE---E---EEeeccc---ce--eeccchHHHHHhhHHHHHHH
Q 026063           12 CLLMWLLPFNT--EPWQRRLQ---M---PF-------IS---S---AILDRRS---KR--MSLMSLQEILTTSCLGLVIR   65 (244)
Q Consensus        12 ~~l~~~~p~~~--~~~~~~l~---~---~~-------~~---~---~i~d~~~---~~--~~v~~~~~~i~~~~v~~~lR   65 (244)
                      -||+|.+||+.  ..++.+++   +   ++       ++   |   .++||.+   .+  |.+.+. ..++.+.+.+.+|
T Consensus        29 PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~~~~~~~~y~~~~~-~~~I~~~Vrsavr  107 (280)
T cd03406          29 PGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYD-KTLIFNKIHHELN  107 (280)
T ss_pred             CceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHHHHHHHHHHhHhhH-HHHHHHHHHHHHH
Confidence            48999999972  24555542   1   21       11   1   2334443   11  455443 4445588999999


Q ss_pred             hhcCCCCHHHHHh-hHHHHHHHHHHHHHHHHhhc--CcEEEEEEeeeccchHHHHHHHHHHHHHHHHHH--------HHH
Q 026063           66 ASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRL--------AAN  134 (244)
Q Consensus        66 ~vig~~tldeil~-~R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~--------A~~  134 (244)
                      .++|+++++++++ +|+.|...+++.+++.++.|  ||.|.+|.|++++||+++.++| ++|.|||++.        +.+
T Consensus       108 ~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM~aER~k~~~~~~~~~~~~  186 (280)
T cd03406         108 QFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELMEAEKTKLLIAIQKQKVVE  186 (280)
T ss_pred             HHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHHHHHHHhhhhccchhHHHH
Confidence            9999999999999 89999999999999999988  9999999999999999999997 7999999999        999


Q ss_pred             HHHHHHHHHHHHHhhhHHHhhHhhc
Q 026063          135 EKAEAEKILQIKRAEGEAESKYLAG  159 (244)
Q Consensus       135 ~~Aegek~a~i~~Aeaeaea~~~~A  159 (244)
                      .+|||+|.+.+++|+|+++-..+.-
T Consensus       187 ~~ae~~~~~~~~~a~~~~~~~~~~~  211 (280)
T cd03406         187 KEAETERKKAVIEAEKVAQVAKILF  211 (280)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999998876543

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.84  E-value=8.3e-21  Score=164.83  Aligned_cols=128  Identities=16%  Similarity=0.271  Sum_probs=112.8

Q ss_pred             hhhhhhccCC-ccccccccc---cc----------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCC
Q 026063           12 CLLMWLLPFN-TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKL   71 (244)
Q Consensus        12 ~~l~~~~p~~-~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~   71 (244)
                      -||+|.+||. .+.++.|++   .+                ++.|+|.||.+++|++.|+...+. ..+++++|+++|++
T Consensus        26 pGL~~~~P~~~~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~~~v~~~~~~l~-~~~~salR~vig~~  104 (219)
T cd03402          26 TGLRWVNPFSSKKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAVFNVDDYEEFVH-IQSESALRHVASQY  104 (219)
T ss_pred             CceEEEeccceEEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHHHHcCCHHHHHH-HHHHHHHHHHHccC
Confidence            5999999997 344555543   11                457899999999999999988777 79999999999999


Q ss_pred             CHHHHHh-------hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063           72 DLDATFE-------QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAE  140 (244)
Q Consensus        72 tldeil~-------~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aege  140 (244)
                      +++++++       +|++|+.++++.+++.++.|||.|.+|+|++++||+++.+||+++|+|+++..|+...++|.
T Consensus       105 ~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~Ae~~~~Ar~~~~~Ga  180 (219)
T cd03402         105 PYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQASAIIAARRKIVEGA  180 (219)
T ss_pred             cHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999986       57999999999999999999999999999999999999999999999999988887777763

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=99.84  E-value=4.3e-20  Score=156.49  Aligned_cols=81  Identities=15%  Similarity=0.255  Sum_probs=74.1

Q ss_pred             HHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHH
Q 026063           52 QEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRL  131 (244)
Q Consensus        52 ~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~  131 (244)
                      .+.++.+.+++++|+++|+++++|++++|++|+..|.+.+.+.+++|||.|.+|.|++|+||+++.++|++++.|+++.+
T Consensus        90 ~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~  169 (196)
T cd03401          90 DERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAE  169 (196)
T ss_pred             HhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence            34444578999999999999999999999999999999999999999999999999999999999999999888887754


Q ss_pred             H
Q 026063          132 A  132 (244)
Q Consensus       132 A  132 (244)
                      .
T Consensus       170 ~  170 (196)
T cd03401         170 R  170 (196)
T ss_pred             H
Confidence            3

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.3e-19  Score=154.68  Aligned_cols=182  Identities=21%  Similarity=0.356  Sum_probs=139.5

Q ss_pred             CCCcCCCcchhhhhhhhccCCcccccccccccceEEEEeecc------------cceeeccchHHHHHhhHHHHHHHhhc
Q 026063            1 MFDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRR------------SKRMSLMSLQEILTTSCLGLVIRASV   68 (244)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~i~d~~------------~~~~~v~~~~~~i~~~~v~~~lR~vi   68 (244)
                      +||+|.+|+++.+.+     +++    +||+..++.+|+..+            +-.|+    +.++. ++..+.|++++
T Consensus        66 i~d~rs~p~~v~~it-----Gsk----dLQ~VniTlril~rp~~sqLP~If~~~G~dyD----ErVLp-sI~~eiLKsVV  131 (271)
T KOG3083|consen   66 IFDCRSRPRNVPVIT-----GSK----DLQNVNITLRILFRPVVSQLPCIFTSIGEDYD----ERVLP-SITTEILKSVV  131 (271)
T ss_pred             EEeccCCCccccccc-----Cch----hhhcccceEEEEecccccccchHHHhhccccc----ccccc-cchHHHHHHHH
Confidence            699999999998888     766    899999988887744            23344    45555 78999999999


Q ss_pred             CCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 026063           69 PKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAA---NEKAEAEKILQI  145 (244)
Q Consensus        69 g~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~---~~~Aegek~a~i  145 (244)
                      ++++..|++++|+.+.+.+...+.+....||+.+++|.|+++.+..++.+|++.+..|+|+.+..   +.+||.+|.+.+
T Consensus       132 a~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aav  211 (271)
T KOG3083|consen  132 ARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAV  211 (271)
T ss_pred             HhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence            99999999999999999999999999999999999999999999999999999999998876542   345666666555


Q ss_pred             HHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEecCCC
Q 026063          146 KRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA--SSKTNSVFIPHGP  223 (244)
Q Consensus       146 ~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~--~~~~~~ivlp~~~  223 (244)
                      ++||||+++           .+..+.+.+.+            +    +-++.++.+|+-++++.  +.+.|+.+||.+.
T Consensus       212 IsAEGds~a-----------A~li~~sla~a------------G----~gLielrrlEAa~dia~~Ls~s~nv~YLp~g~  264 (271)
T KOG3083|consen  212 ISAEGDSKA-----------AELIANSLATA------------G----DGLIELRRLEAAEDIAYQLSRSRNVTYLPAGQ  264 (271)
T ss_pred             eecccchHH-----------HHHHHHHHhhc------------C----CceeeehhhhhHHHHHHHHhcCCCceeccCCc
Confidence            555555444           44444444432            1    11224667787777763  4667888999643

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.58  E-value=3.4e-14  Score=117.31  Aligned_cols=130  Identities=26%  Similarity=0.396  Sum_probs=90.2

Q ss_pred             hhhhhhhhccCC--ccccccccc---cc------------------ceEEEEeecccceeec----cchHHHHHhhHHHH
Q 026063           10 TMCLLMWLLPFN--TEPWQRRLQ---MP------------------FISSAILDRRSKRMSL----MSLQEILTTSCLGL   62 (244)
Q Consensus        10 ~~~~l~~~~p~~--~~~~~~~l~---~~------------------~~~~~i~d~~~~~~~v----~~~~~~i~~~~v~~   62 (244)
                      .--|++|++||.  .+.++.+.+   +.                  .++|+|-|+...+.+.    .+++..+. +.+.+
T Consensus        21 ~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~-~~~~~   99 (179)
T PF01145_consen   21 LGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFVQNYEGGEEDPENLLR-QIVES   99 (179)
T ss_dssp             -----------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCCCCCSS-HCHHHHHHH-HHHHH
T ss_pred             ECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHHHhhhcchhhhhhhhh-hhhhh
Confidence            345899999976  233333322   22                  2244665666666555    56666666 79999


Q ss_pred             HHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026063           63 VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR-LAANEKAEAE  140 (244)
Q Consensus        63 ~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~-~A~~~~Aege  140 (244)
                      ++|++++++++++++++|.++...+.+.+++.+.+|||+|.+|.|.++.+|+++.++|..+..+++++ ++...+|++|
T Consensus       100 ~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~~~~~~~~~~~a~~e  178 (179)
T PF01145_consen  100 ALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAEQEAQQAEIERAEAE  178 (179)
T ss_dssp             HHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             hhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999988877 5555444443

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>smart00244 PHB prohibitin homologues

Probab=99.57  E-value=1.3e-14  Score=117.84  Aligned_cols=113  Identities=21%  Similarity=0.316  Sum_probs=96.1

Q ss_pred             hhhhhhhccCC--ccccccccccc-------------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcC
Q 026063           11 MCLLMWLLPFN--TEPWQRRLQMP-------------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVP   69 (244)
Q Consensus        11 ~~~l~~~~p~~--~~~~~~~l~~~-------------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig   69 (244)
                      --|++|++||.  .+.++.+.+..                   .+.|+|.|+.++.|++.++......+.+++++|+++|
T Consensus        25 ~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~~~~~~~~~~~~l~~~i~~~ir~~i~  104 (160)
T smart00244       25 GPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKAVYRVLDADYAVIEQLAQTTLRSVIG  104 (160)
T ss_pred             CCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHHhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence            45999999995  35555554411                   3356888998888888887743444899999999999


Q ss_pred             CCCHHHHHh-hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHH
Q 026063           70 KLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI  123 (244)
Q Consensus        70 ~~tldeil~-~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~  123 (244)
                      +++++++++ +|+++++.+.+.+.+.+++||+.|.+|.|+++++|+++.++|+++
T Consensus       105 ~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k  159 (160)
T smart00244      105 KMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ  159 (160)
T ss_pred             cccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            999999999 799999999999999999999999999999999999999999764

prohibitin homologues

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.36  E-value=1e-12  Score=104.49  Aligned_cols=88  Identities=16%  Similarity=0.264  Sum_probs=75.2

Q ss_pred             ceEEEEeecccceee---------ccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEE
Q 026063           33 FISSAILDRRSKRMS---------LMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIV  103 (244)
Q Consensus        33 ~~~~~i~d~~~~~~~---------v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~  103 (244)
                      ++.|+|.|+.+++..         +.+....+. +.+++++|+++|++++++++++|++|+..|.+.+...+++|||+|.
T Consensus        29 ~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~lR~~ig~~tl~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~  107 (128)
T cd03399          29 VFQVKVGGTEEAIATAAERFLGKSEEEIEELVK-EVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELD  107 (128)
T ss_pred             EEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHCCCEEE
Confidence            457899998854322         233444444 6889999999999999999999999999999999999999999999


Q ss_pred             EEEeeeccchHHHHHHHH
Q 026063          104 QTLIVDIEPDEHVKRAMN  121 (244)
Q Consensus       104 ~V~I~~i~~p~~i~~ai~  121 (244)
                      +|+|++|++|+++.+++.
T Consensus       108 ~v~I~~i~~~~~~~~~~~  125 (128)
T cd03399         108 SFTIKDITDTDGYLNNLG  125 (128)
T ss_pred             EEeeEEecCCCCCHHHcC
Confidence            999999999999887764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.31  E-value=5.3e-12  Score=99.68  Aligned_cols=72  Identities=13%  Similarity=0.294  Sum_probs=66.2

Q ss_pred             HHHHHhhHHHHHHHhhcCCCCHHHHHh-hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHH
Q 026063           52 QEILTTSCLGLVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI  123 (244)
Q Consensus        52 ~~~i~~~~v~~~lR~vig~~tldeil~-~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~  123 (244)
                      .+.++.+.+.+++|+++|+++++++++ +|++|+..+.+.+++.+.+|||.|.+|.|++++||+++.+||+++
T Consensus        51 ~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          51 ARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             hheeechhHHHHHHHHhcCCCHHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            344444789999999999999999997 799999999999999999999999999999999999999999764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.30  E-value=9.7e-11  Score=106.16  Aligned_cols=146  Identities=21%  Similarity=0.168  Sum_probs=110.7

Q ss_pred             HHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchH--HHHHHHHHHHHHHHHHHHHH---
Q 026063           60 LGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE--HVKRAMNEINAAARLRLAAN---  134 (244)
Q Consensus        60 v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~--~i~~ai~~~~~Aer~~~A~~---  134 (244)
                      +..++|.++|+||++|+|.+|+++...+++.....+.++||.|.+..|+|+...+  ++..++.+...++-.+.|.+   
T Consensus       102 lEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGka~taev~rdArIgvA  181 (428)
T KOG2668|consen  102 LEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGKATTAEVARDARIGVA  181 (428)
T ss_pred             hhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhhHHHHHHHhhcccchH
Confidence            5668999999999999999999999999999999999999999999999998766  68887765444332221111   


Q ss_pred             --------------------------------------------------------------------------------
Q 026063          135 --------------------------------------------------------------------------------  134 (244)
Q Consensus       135 --------------------------------------------------------------------------------  134 (244)
                                                                                                      
T Consensus       182 EAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr  261 (428)
T KOG2668|consen  182 EAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAEADLAYELQAAKTKQAIREEEIQVAVVER  261 (428)
T ss_pred             HhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------HHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHH
Q 026063          135 ----------------------------------EKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAF  180 (244)
Q Consensus       135 ----------------------------------~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~  180 (244)
                                                        ..||+++...+..|++|++..+.+++|||.++...|.++++.+.+-
T Consensus       262 ~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~k  341 (428)
T KOG2668|consen  262 TKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAK  341 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence                                              1244445556677888888888888888888888888888888888


Q ss_pred             HhcCCCCCchhHHHHHHHHHHHHHHHHHhc
Q 026063          181 SENVPGTSSKDVMDMVLVTQYFDTMKEIGA  210 (244)
Q Consensus       181 a~a~~~~~~~~~~~~~l~~ryleal~~i~~  210 (244)
                      +++|..+  .+++.+   .-.|++|+.++.
T Consensus       342 a~v~~~y--~~aa~l---~~lLealp~Ia~  366 (428)
T KOG2668|consen  342 AEVYQAY--AQAAYL---RTLLEALPMIAA  366 (428)
T ss_pred             HHHHHHh--hhhHHH---HHHHHHHHHHHH
Confidence            8877643  333322   336899998873

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.21  E-value=2.5e-11  Score=103.32  Aligned_cols=89  Identities=18%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             eEEEEeecccce---------eeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhh--HHHHHHHHHHHHHHHHhhcCcEE
Q 026063           34 ISSAILDRRSKR---------MSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAMSHYGYEI  102 (244)
Q Consensus        34 ~~~~i~d~~~~~---------~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~--R~~i~~~I~~~l~~~~~~~GI~V  102 (244)
                      ++|+|.||.+++         |.+++.+..+. +.+++++|+++|++++++++.+  |++|+..+++.+++.+.+|||+|
T Consensus       107 ~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~i  185 (207)
T cd03408         107 YSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLR-ALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLEL  185 (207)
T ss_pred             EEEEEcCHHHHHHHhcCCCcceeHHHHHHHHH-HHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHHHHHHHhcCcEE
Confidence            467888988655         33345666666 7999999999999999999986  99999999999999999999999


Q ss_pred             EEEEeeeccchHHHHHHHHHH
Q 026063          103 VQTLIVDIEPDEHVKRAMNEI  123 (244)
Q Consensus       103 ~~V~I~~i~~p~~i~~ai~~~  123 (244)
                      .+|.|++|.+|++++++|+++
T Consensus       186 ~~v~I~~i~~p~e~~~ai~~r  206 (207)
T cd03408         186 VSVYIESISYPDEVQKLIDKR  206 (207)
T ss_pred             EEEEEEeecCCHHHHHHHHhh
Confidence            999999999999999998764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.18  E-value=1.6e-10  Score=88.62  Aligned_cols=91  Identities=25%  Similarity=0.435  Sum_probs=79.7

Q ss_pred             ceEEEEeecccceeeccchHH-HHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063           33 FISSAILDRRSKRMSLMSLQE-ILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE  111 (244)
Q Consensus        33 ~~~~~i~d~~~~~~~v~~~~~-~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~  111 (244)
                      .++|+|-|+....|...+... .+..+.+..++|+++++++++++.++|++|...+++.+...++.||+.|.+|.|.++.
T Consensus        29 ~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~  108 (121)
T cd02106          29 VVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDID  108 (121)
T ss_pred             EEEEEEeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEEecC
Confidence            457888888866666655542 3444789999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHH
Q 026063          112 PDEHVKRAMNEI  123 (244)
Q Consensus       112 ~p~~i~~ai~~~  123 (244)
                      +|+++.++++++
T Consensus       109 ~~~~~~~ai~~~  120 (121)
T cd02106         109 PPEEVQEAMEDR  120 (121)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999775

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.73  E-value=2.7e-07  Score=89.01  Aligned_cols=147  Identities=20%  Similarity=0.202  Sum_probs=109.0

Q ss_pred             cchhhhhhhhccCCcccccccccccceEEEEe-ecc------------cceeeccc-h---------------HH---HH
Q 026063            8 PRTMCLLMWLLPFNTEPWQRRLQMPFISSAIL-DRR------------SKRMSLMS-L---------------QE---IL   55 (244)
Q Consensus         8 ~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~i~-d~~------------~~~~~v~~-~---------------~~---~i   55 (244)
                      +-...|.+|++|+.  +-..|+.+..+..++. +.+            -++..|-+ .               ++   ..
T Consensus        62 ~vV~gGg~~v~Pi~--q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~  139 (548)
T COG2268          62 KVVRGGGAIVMPIF--QTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQL  139 (548)
T ss_pred             cEEecCceEEecce--eeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHH
Confidence            33467888999997  4445777666654333 110            12222222 1               11   12


Q ss_pred             HhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccch-------HHHHHHHHHHHHHHH
Q 026063           56 TTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPD-------EHVKRAMNEINAAAR  128 (244)
Q Consensus        56 ~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p-------~~i~~ai~~~~~Aer  128 (244)
                      ..+...++||.+++++|+.+++++|..+...|.+.+...++..|+.++++.|+++..+       ..+.++...+..++-
T Consensus       140 ~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv  219 (548)
T COG2268         140 AEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQV  219 (548)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHHHH
Confidence            2355788999999999999999999999999999999999999999999999999999       899999988888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhhH
Q 026063          129 LRLAANEKAEAEKILQIKRAEGEAESKY  156 (244)
Q Consensus       129 ~~~A~~~~Aegek~a~i~~Aeaeaea~~  156 (244)
                      .+++.+..+|.+++..+..++++.++..
T Consensus       220 ~~~a~ia~~E~~~~t~i~i~~a~~~a~~  247 (548)
T COG2268         220 LQDAEIAENEAEKETEIAIAEANRDAKL  247 (548)
T ss_pred             HHHHHHHHhhhhhhhHHHHHhhhhHHHH
Confidence            7777777777777777766655555543

>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]

Probab=98.62  E-value=3.5e-06  Score=73.23  Aligned_cols=143  Identities=17%  Similarity=0.227  Sum_probs=96.8

Q ss_pred             hhhhhhccCC--ccccccccccc---ceEE-------EEeecc--------cce------eeccchHHHHHhhHHHHHHH
Q 026063           12 CLLMWLLPFN--TEPWQRRLQMP---FISS-------AILDRR--------SKR------MSLMSLQEILTTSCLGLVIR   65 (244)
Q Consensus        12 ~~l~~~~p~~--~~~~~~~l~~~---~~~~-------~i~d~~--------~~~------~~v~~~~~~i~~~~v~~~lR   65 (244)
                      -|.++.|||+  ++.+...||..   .+-|       -.+|+.        .+.      |.| |+...++-+-+---+.
T Consensus        47 PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~Vydiv~NYtv-dYD~~lIfnKiHHE~N  125 (322)
T KOG2962|consen   47 PGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYDIVKNYTV-DYDKTLIFNKIHHELN  125 (322)
T ss_pred             CCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchhHHHHHHHHccc-CCcchhhhhHHHHHHH
Confidence            3677889997  67777777732   1111       112211        111      221 2344444344555677


Q ss_pred             hhcCCCCHHHHHh-hHHHHHHHHHHHHHHHHhhc--CcEEEEEEeeeccchHHHHHHHHHHHHHHHHH--------HHHH
Q 026063           66 ASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLR--------LAAN  134 (244)
Q Consensus        66 ~vig~~tldeil~-~R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~--------~A~~  134 (244)
                      ...+.|||.+++- --++|...++..++..+..+  |+.|..|+++....|+.+++.+ ..|++|+-+        +-..
T Consensus       126 QFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~-E~ME~EkTKlLiA~ekQkVvE  204 (322)
T KOG2962|consen  126 QFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNF-ELMEAEKTKLLIAAEKQKVVE  204 (322)
T ss_pred             hHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhH-HHHHHHhhhhHHHHHHHHHHH
Confidence            7788899999987 47899999999999999887  9999999999999999999887 456666532        1123


Q ss_pred             HHHHHHHHHHHHHhhhHHHhhH
Q 026063          135 EKAEAEKILQIKRAEGEAESKY  156 (244)
Q Consensus       135 ~~Aegek~a~i~~Aeaeaea~~  156 (244)
                      .+||.++...+++||--++.+.
T Consensus       205 KeAETerkkAviEAEK~AqVa~  226 (322)
T KOG2962|consen  205 KEAETERKKAVIEAEKNAQVAK  226 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH
Confidence            4677777777777776655443

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=97.98  E-value=5.4e-05  Score=65.59  Aligned_cols=88  Identities=24%  Similarity=0.315  Sum_probs=71.7

Q ss_pred             EEEEeeccc---------ceeeccchHHHHHhhHHHHHHHhhcC--CCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEE
Q 026063           35 SSAILDRRS---------KRMSLMSLQEILTTSCLGLVIRASVP--KLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIV  103 (244)
Q Consensus        35 ~~~i~d~~~---------~~~~v~~~~~~i~~~~v~~~lR~vig--~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~  103 (244)
                      +.+|.||..         ..|..++..+.+. +.+.+.+-++++  ++++.++-++-++|++.+++.++..++.||+++.
T Consensus       108 s~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~-~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~  186 (211)
T PF13421_consen  108 SFRIVDPVLFIRNLVGTQSEFTTEEINEQLR-SEIVQAIADALAESKISILDIPAHLDEISEALKEKLNPEFERYGIELV  186 (211)
T ss_pred             EEEEeCHHHHHHhhCCCCCcccHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEE
Confidence            458888773         4466666666665 455555666665  4788899889999999999999999999999999


Q ss_pred             EEEeeeccchHHHHHHHHHH
Q 026063          104 QTLIVDIEPDEHVKRAMNEI  123 (244)
Q Consensus       104 ~V~I~~i~~p~~i~~ai~~~  123 (244)
                      ++.|.+|.+|+++++++.++
T Consensus       187 ~f~I~~i~~pee~~~~i~~~  206 (211)
T PF13421_consen  187 DFGIESISFPEEVQKAIDKR  206 (211)
T ss_pred             EEEEEeecCCHHHHHHHHHH
Confidence            99999999999999998765

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=97.65  E-value=0.00018  Score=62.77  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhhcCcEEEEEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHH
Q 026063           87 VEEELEKAMSHYGYEIVQTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ  165 (244)
Q Consensus        87 I~~~l~~~~~~~GI~V~~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea  165 (244)
                      |.+.+.+.+..- +.=-.+.|.++.+.+ .+-+.+.+.+..       ...|+.++.+...+|+|++++.+++|+|++++
T Consensus       121 i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~-------~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~  192 (242)
T cd03405         121 LMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYR-------RMRAERERIAAEFRAEGEEEAERIRADADRER  192 (242)
T ss_pred             HHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            444444444331 222468888888753 344554444332       23566777788899999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHhc
Q 026063          166 RQAIVDGLRDSVLAFSEN  183 (244)
Q Consensus       166 ~~~~Aea~a~a~~~~a~a  183 (244)
                      .++.|+|++++...-+++
T Consensus       193 ~~~~Aea~a~a~~~~a~g  210 (242)
T cd03405         193 TVILAEAYREAQEIRGEG  210 (242)
T ss_pred             HHHHHHHHHHHHHHHhhH
Confidence            999999999887777654

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PTZ00491 major vault protein; Provisional

Probab=97.41  E-value=0.0023  Score=64.84  Aligned_cols=77  Identities=16%  Similarity=0.187  Sum_probs=53.3

Q ss_pred             cceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhH-HHHHHHHHHHHHHH--------HhhcCcEEEEEEeeeccch
Q 026063           43 SKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQK-NDIAKAVEEELEKA--------MSHYGYEIVQTLIVDIEPD  113 (244)
Q Consensus        43 ~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R-~~i~~~I~~~l~~~--------~~~~GI~V~~V~I~~i~~p  113 (244)
                      ...|+|.|.---.- ..+.+.+|..+++.++++.-.+- .-|...|....++.        +...|+.|.+|.|+++.|-
T Consensus       563 ~k~Fsv~DFvGd~C-k~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F~~N~lvit~VDvqsvEpv  641 (850)
T PTZ00491        563 QKCFSVPDFVGDAC-KTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRFPANNLVITNVDVQSVEPV  641 (850)
T ss_pred             hheeccCchHHHHH-HHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEEccCCeEEEEEeeeeeeec
Confidence            47788877655555 36889999999999999997643 33444444422222        3456999999999999984


Q ss_pred             H-HHHHHH
Q 026063          114 E-HVKRAM  120 (244)
Q Consensus       114 ~-~i~~ai  120 (244)
                      + ..++++
T Consensus       642 D~~tr~~L  649 (850)
T PTZ00491        642 DERTRDSL  649 (850)
T ss_pred             CHHHHHHH
Confidence            4 344444

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=97.32  E-value=0.0017  Score=59.95  Aligned_cols=73  Identities=15%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             EEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063          104 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE  182 (244)
Q Consensus       104 ~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~  182 (244)
                      .|+|.++.+-+ ..-..+.+.+..       ..+||.++.+...+|+|++++.+++++|+.++.++.|+|++++...-++
T Consensus       202 GI~V~~V~i~~i~~P~~v~~ai~~-------~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~ae  274 (334)
T PRK11029        202 GIEVVDVRIKQINLPTEVSDAIYN-------RMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGE  274 (334)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            57888888754 445555544442       2368888889999999999999999999999999999999887766665


Q ss_pred             c
Q 026063          183 N  183 (244)
Q Consensus       183 a  183 (244)
                      .
T Consensus       275 g  275 (334)
T PRK11029        275 G  275 (334)
T ss_pred             h
Confidence            3

>TIGR01932 hflC HflC protein

Probab=97.27  E-value=0.0021  Score=58.93  Aligned_cols=73  Identities=18%  Similarity=0.304  Sum_probs=51.5

Q ss_pred             EEEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHH
Q 026063          103 VQTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFS  181 (244)
Q Consensus       103 ~~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a  181 (244)
                      ..+.|.++.+-+ ..-..+.+.+..       ...||.++.+...+++|++++..+.++|++++.++.|+|++++...-+
T Consensus       191 ~Gi~V~~V~I~~i~~p~~v~~Ai~~-------~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~A  263 (317)
T TIGR01932       191 IGIEVVDVRIKKINYSDELSESIYN-------RMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKG  263 (317)
T ss_pred             CCcEEEEEEEEecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456666666633 333444333333       235777778888899999999999999999999999998877755555


Q ss_pred             h
Q 026063          182 E  182 (244)
Q Consensus       182 ~  182 (244)
                      +
T Consensus       264 e  264 (317)
T TIGR01932       264 E  264 (317)
T ss_pred             h
Confidence            4

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0022  Score=57.58  Aligned_cols=89  Identities=12%  Similarity=0.157  Sum_probs=75.7

Q ss_pred             EEEEeecc---------cceeeccchHHHHHhhHHHHHHHhhcCCCCHH--HHHhhHHHHHHHHHHHHHHHHhhcCcEEE
Q 026063           35 SSAILDRR---------SKRMSLMSLQEILTTSCLGLVIRASVPKLDLD--ATFEQKNDIAKAVEEELEKAMSHYGYEIV  103 (244)
Q Consensus        35 ~~~i~d~~---------~~~~~v~~~~~~i~~~~v~~~lR~vig~~tld--eil~~R~~i~~~I~~~l~~~~~~~GI~V~  103 (244)
                      +.+|.||.         +-.|.|+|..+.+. +.+..+|-..|+++-.+  .+-++--+|+.-+.+.|++.+..+|..|+
T Consensus       135 s~kvtDpi~fi~~I~g~~dvy~v~di~~q~l-s~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~  213 (345)
T COG4260         135 SIKVTDPILFIQQIPGNRDVYTVDDINQQYL-SEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVD  213 (345)
T ss_pred             EEEecCHHHHHHhccCCCceEEHHHHHHHHH-HHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEe
Confidence            45788866         45689999888888 68888999999887543  45457779999999999999999999999


Q ss_pred             EEEeeeccchHHHHHHHHHHH
Q 026063          104 QTLIVDIEPDEHVKRAMNEIN  124 (244)
Q Consensus       104 ~V~I~~i~~p~~i~~ai~~~~  124 (244)
                      +|.|-+|.+|++.+..++.+.
T Consensus       214 sfqvaSisypde~Q~lin~r~  234 (345)
T COG4260         214 SFQVASISYPDESQALINMRN  234 (345)
T ss_pred             eEEEEEecCcHHHHHHHHhhc
Confidence            999999999999999998764

>TIGR01933 hflK HflK protein

Probab=97.04  E-value=0.0064  Score=53.76  Aligned_cols=73  Identities=14%  Similarity=0.082  Sum_probs=52.3

Q ss_pred             EEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063          104 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE  182 (244)
Q Consensus       104 ~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~  182 (244)
                      .+.|.++.+-. ..-..+.+.+..       ...|+.++++.+.+|+++++..+.+|+|+|++.+..|+|.+++....++
T Consensus       134 GI~V~~v~I~~i~~p~~v~~a~~~-------~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~  206 (261)
T TIGR01933       134 GITVTDVNFQSARPPEEVKEAFDD-------VIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAK  206 (261)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57888887754 334444333322       2346667777888888888888889999999888888888888777766


Q ss_pred             c
Q 026063          183 N  183 (244)
Q Consensus       183 a  183 (244)
                      +
T Consensus       207 g  207 (261)
T TIGR01933       207 G  207 (261)
T ss_pred             h
Confidence            4

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=96.89  E-value=0.0049  Score=54.62  Aligned_cols=146  Identities=11%  Similarity=0.138  Sum_probs=87.5

Q ss_pred             ceeeccchHHHHHh-hHHHHHHHhhcCCCCHHHHHhhH--HHH-H---HHHHHHHHHHHhh-cCcEEEEEEeeeccchH-
Q 026063           44 KRMSLMSLQEILTT-SCLGLVIRASVPKLDLDATFEQK--NDI-A---KAVEEELEKAMSH-YGYEIVQTLIVDIEPDE-  114 (244)
Q Consensus        44 ~~~~v~~~~~~i~~-~~v~~~lR~vig~~tldeil~~R--~~i-~---~~I~~~l~~~~~~-~GI~V~~V~I~~i~~p~-  114 (244)
                      .+|.|.|+...+.. ......++..+-. .+.++++..  +++ +   ..+.+.+.+.++. .+-.-..+.|.++.+-+ 
T Consensus        94 v~yrI~d~~~~~~~~~~~~~~l~~~~~~-~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i  172 (266)
T cd03404          94 VQYRISDPYDYLFNVRDPEGTLRQAAES-AMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDA  172 (266)
T ss_pred             EEEEECCHHHHHhhCCCHHHHHHHHHHH-HHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeC
Confidence            67999887655431 0011222222211 233333321  122 1   2344444444433 22212269999998864 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHH
Q 026063          115 HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMD  194 (244)
Q Consensus       115 ~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~  194 (244)
                      ..-..+.+.+.+       ...|+.++++.+.+|++++++.+.+|+|+|++.++.|+|++++...-+++       ++-.
T Consensus       173 ~~p~~i~~a~~~-------~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~-------~a~~  238 (266)
T cd03404         173 DPPEEVQDAFDD-------VNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQG-------EAAR  238 (266)
T ss_pred             CCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHH-------HHHH
Confidence            445656554443       34577778888889999999999999999999999999999988777764       2222


Q ss_pred             HHHHHHHHHHHHH
Q 026063          195 MVLVTQYFDTMKE  207 (244)
Q Consensus       195 ~~l~~ryleal~~  207 (244)
                         +.-|.+++++
T Consensus       239 ---~~~~~~a~~~  248 (266)
T cd03404         239 ---FESLLAEYKK  248 (266)
T ss_pred             ---HHHHHHHHhh
Confidence               3446777763

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=96.88  E-value=0.003  Score=56.14  Aligned_cols=74  Identities=14%  Similarity=0.102  Sum_probs=57.3

Q ss_pred             EEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063          104 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE  182 (244)
Q Consensus       104 ~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~  182 (244)
                      .+.|.++.+-+ ..-+.+...+.       ....|+.++++.+.+|+|++.+.+..|+|+|++.++.|+|.+++...+++
T Consensus       128 GI~V~~v~I~~i~~p~~v~~A~~-------~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~  200 (262)
T cd03407         128 GFEIVATLITDIDPDAEVKRAMN-------EINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIAD  200 (262)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            56666665533 23333333332       34578889999999999999999999999999999999999999999988


Q ss_pred             cC
Q 026063          183 NV  184 (244)
Q Consensus       183 a~  184 (244)
                      +.
T Consensus       201 g~  202 (262)
T cd03407         201 GL  202 (262)
T ss_pred             HH
Confidence            64

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=96.75  E-value=0.0035  Score=55.69  Aligned_cols=131  Identities=19%  Similarity=0.197  Sum_probs=82.7

Q ss_pred             cchHHHHHHHHHHHHH----------------HHHHHH--HHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhh
Q 026063          111 EPDEHVKRAMNEINAA----------------ARLRLA--ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDG  172 (244)
Q Consensus       111 ~~p~~i~~ai~~~~~A----------------er~~~A--~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea  172 (244)
                      ++...+.+++++.|.+                ++-++|  ++.+||..|.+.+.++||++++.+.+|||++++..+-.+|
T Consensus       125 ~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg  204 (301)
T KOG2620|consen  125 SLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEG  204 (301)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHH
Confidence            4456777888777766                223444  5678888899999999999999999999999999998887


Q ss_pred             hhHHHHHHHhcCCC------CCch-----hHHHHH-----HHHHHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHH
Q 026063          173 LRDSVLAFSENVPG------TSSK-----DVMDMV-----LVTQYFDTMKEIGASSKT-NSVFIPHGPGAVKDIASQIRE  235 (244)
Q Consensus       173 ~a~a~~~~a~a~~~------~~~~-----~~~~~~-----l~~ryleal~~i~~~~~~-~~ivlp~~~~~~~~~~~~~~~  235 (244)
                      .+.--..+++...+      .+-+     .++++.     -.-.|.++.+.+..+++- +.-=--.=|.|.+++.+++.|
T Consensus       205 ~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~sntv~lP~~pg~v~~mvaQ  284 (301)
T KOG2620|consen  205 IARQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKKSNTVFLPHGPGDVRDMVAQ  284 (301)
T ss_pred             HHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhcccCceEEecCCCCcHHHHHHH
Confidence            65332222221110      0000     111222     125688888888644321 110011236788899999999


Q ss_pred             HHHhhh
Q 026063          236 GLLQAN  241 (244)
Q Consensus       236 ~~~~~~  241 (244)
                      ++.--.
T Consensus       285 a~~~~~  290 (301)
T KOG2620|consen  285 ALNGYK  290 (301)
T ss_pred             HHHHHH
Confidence            987543

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=95.93  E-value=0.044  Score=52.24  Aligned_cols=130  Identities=9%  Similarity=0.112  Sum_probs=72.5

Q ss_pred             ceeeccchHHHHHh-hHHHHHHHhhcCCCCHHHHHhhH--HHHH----HHHHHHHHHHHhhcCcEE--EEEEeeeccchH
Q 026063           44 KRMSLMSLQEILTT-SCLGLVIRASVPKLDLDATFEQK--NDIA----KAVEEELEKAMSHYGYEI--VQTLIVDIEPDE  114 (244)
Q Consensus        44 ~~~~v~~~~~~i~~-~~v~~~lR~vig~~tldeil~~R--~~i~----~~I~~~l~~~~~~~GI~V--~~V~I~~i~~p~  114 (244)
                      ..|+|.|+...+.. ......|+.++ .-.+.+++..+  +++-    ..|...+.+.+... +.=  ..|+|.++.+-+
T Consensus       163 VqYrI~Dp~~~lf~v~~~~~~L~~~~-~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~-l~~y~~GI~V~~V~I~d  240 (419)
T PRK10930        163 VQYRVTDPEKYLFSVTSPDDSLRQAT-DSALRGVIGKYTMDRILTEGRTVIRSDTQRELEET-IRPYDMGITLLDVNFQA  240 (419)
T ss_pred             EEEEECCHHHHHHhccCHHHHHHHHH-HHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHH-HhhcCCCeEEEEEEEee
Confidence            56888887665531 01233344333 12344444422  2221    23444555555441 111  247778887743


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063          115 -HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE  182 (244)
Q Consensus       115 -~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~  182 (244)
                       ..=+.+..   |    =..+..|+.++++.+.+|++++...+.+|+|+|+++...|+|.+++...-++
T Consensus       241 i~pP~eV~~---A----f~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~Ae  302 (419)
T PRK10930        241 ARPPEEVKA---A----FDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQ  302 (419)
T ss_pred             cCCCHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             22233321   1    1134456777778888889998888889999888888888887766444443

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.12  Score=46.24  Aligned_cols=163  Identities=15%  Similarity=0.196  Sum_probs=91.9

Q ss_pred             hhhhhhhccCC--cccccccccccceEEEEe--------ecc------cceeeccchHHHHHh-hHHHHHHHhhcCCCCH
Q 026063           11 MCLLMWLLPFN--TEPWQRRLQMPFISSAIL--------DRR------SKRMSLMSLQEILTT-SCLGLVIRASVPKLDL   73 (244)
Q Consensus        11 ~~~l~~~~p~~--~~~~~~~l~~~~~~~~i~--------d~~------~~~~~v~~~~~~i~~-~~v~~~lR~vig~~tl   73 (244)
                      .-||+|+|||.  ......+++++..++++.        |-.      -.+|+|.|+...+.. +.....++..+. -++
T Consensus        44 ~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~~~~~~~v~~~~~~l~~~~~-~~l  122 (291)
T COG0330          44 EPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYNVENAEAALRQLVQ-SAL  122 (291)
T ss_pred             CCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCHHHHHHhcCCHHHHHHHHHH-HHH
Confidence            46999999994  234445666654444442        211      377999998855541 011112221111 122


Q ss_pred             HHHHhhH--HHH---HH-HHHHHHHHHHhhcCcEEEEEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063           74 DATFEQK--NDI---AK-AVEEELEKAMSHYGYEIVQTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIK  146 (244)
Q Consensus        74 deil~~R--~~i---~~-~I~~~l~~~~~~~GI~V~~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~  146 (244)
                      ..++..+  +++   .. .+...+.+.++. +..=..+.+.++.+-. ..-..+..       .-.....||.++.+.+.
T Consensus       123 R~vig~~~~~e~~~~~~~~i~~~i~~~l~~-~~~~~Gi~V~~V~i~~i~~p~ev~~-------a~~~~~~Aer~~ra~i~  194 (291)
T COG0330         123 RSVIGRMTLDELLTERRAEINAKIREILDE-AADPWGIKVVDVEIKDIDPPEEVQA-------AMEKQMAAERDKRAEIL  194 (291)
T ss_pred             HHHHccccHHHHhhCchHHHHHHHHHHHHH-hhhhcCcEEEEEEEeecCCCHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            2222221  111   01 222222222222 2333455556665533 22233322       33345678889999999


Q ss_pred             HhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhc
Q 026063          147 RAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN  183 (244)
Q Consensus       147 ~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a  183 (244)
                      +|++++++.+++|+|++++..+.++|.+++ +.++++
T Consensus       195 ~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a  230 (291)
T COG0330         195 EAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA  230 (291)
T ss_pred             HhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence            999999999999999999999999999887 555554

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.66  E-value=0.86  Score=44.77  Aligned_cols=73  Identities=12%  Similarity=0.090  Sum_probs=46.9

Q ss_pred             hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc--------CCCCcEEEe
Q 026063          148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA--------SSKTNSVFI  219 (244)
Q Consensus       148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~--------~~~~~~ivl  219 (244)
                      +++++++.+..+.++|++.+..+.|++++.+.+++++...++......  +...+++|+.+++        -+..+++.+
T Consensus       411 ~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~--~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i  488 (548)
T COG2268         411 AKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAEL--FKALVQALPEVAEEAAQPMKNIDSEKVRVI  488 (548)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHhhcccccccceeEEec
Confidence            345677777777888888888888888888899988865433312222  2355677776653        134456666


Q ss_pred             cCC
Q 026063          220 PHG  222 (244)
Q Consensus       220 p~~  222 (244)
                      |..
T Consensus       489 ~~~  491 (548)
T COG2268         489 GGA  491 (548)
T ss_pred             CCc
Confidence            643

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=91.25  E-value=0.47  Score=39.71  Aligned_cols=58  Identities=16%  Similarity=0.266  Sum_probs=27.9

Q ss_pred             EEEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHH
Q 026063          103 VQTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIAR  164 (244)
Q Consensus       103 ~~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAe  164 (244)
                      -.+.|.++.+-+ .+-+.+.+.+.+.+.++....+|+    ..+.+|++|+++.+++|+|+|+
T Consensus       136 ~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~~a~----~~~~~a~~ea~~~~~~A~gea~  194 (196)
T cd03401         136 FGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAK----FVVEKAEQEKQAAVIRAEGEAE  194 (196)
T ss_pred             CCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhh
Confidence            456677776654 444555444444433332222221    2334455555555555555543

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=90.32  E-value=0.89  Score=37.77  Aligned_cols=67  Identities=6%  Similarity=0.047  Sum_probs=53.2

Q ss_pred             ceeeccch--HHHHH--hhHHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063           44 KRMSLMSL--QEILT--TSCLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE  111 (244)
Q Consensus        44 ~~~~v~~~--~~~i~--~~~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~  111 (244)
                      ..|.+.|.  ...+.  .+.+++.+...+++.|.+++-+  +++++..+|++.++..+..-| .|.+|.++++.
T Consensus        85 i~l~~~n~~~~~el~~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~dV~fT~fi  157 (159)
T COG1580          85 ITLEVANKALLEELEEKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVKDVLFTNFI  157 (159)
T ss_pred             EEEeeCCHHHHHHHHHhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeEEEeeehhh
Confidence            44666661  22222  3469999999999999999988  699999999999999998876 88888888764

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=87.98  E-value=4  Score=34.81  Aligned_cols=48  Identities=21%  Similarity=0.099  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhh
Q 026063          115 HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGI  162 (244)
Q Consensus       115 ~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~Aeae  162 (244)
                      ++.+.|..+...+-+.+|..+.+++++++..+.++|++++..+..+|+
T Consensus         7 ~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe   54 (198)
T PRK01558          7 DLINKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAE   54 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666655555544444444444444333

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=87.53  E-value=0.67  Score=40.62  Aligned_cols=26  Identities=4%  Similarity=-0.063  Sum_probs=15.9

Q ss_pred             hhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063          157 LAGLGIARQRQAIVDGLRDSVLAFSE  182 (244)
Q Consensus       157 ~~AeaeAea~~~~Aea~a~a~~~~a~  182 (244)
                      .+|+-+..+..+.|||++++.+.+++
T Consensus       201 eKAeQqk~aavIsAEGds~aA~li~~  226 (271)
T KOG3083|consen  201 EKAEQQKKAAVISAEGDSKAAELIAN  226 (271)
T ss_pred             HHHhhhhhhheeecccchHHHHHHHH
Confidence            44555555666666777776666654

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=86.35  E-value=14  Score=28.79  Aligned_cols=65  Identities=18%  Similarity=0.142  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhch-----------------hhHHHHHHHhhhhhHHHHHH
Q 026063          118 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGL-----------------GIARQRQAIVDGLRDSVLAF  180 (244)
Q Consensus       118 ~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~Ae-----------------aeAea~~~~Aea~a~a~~~~  180 (244)
                      +.+...-.++......+..|+-++...+..|..++...+.+++                 ++.++..+.++|.+++-.++
T Consensus         7 Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~   86 (108)
T COG2811           7 EVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAIL   86 (108)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555555555554444444332                 34455566666666666666


Q ss_pred             Hh
Q 026063          181 SE  182 (244)
Q Consensus       181 a~  182 (244)
                      ++
T Consensus        87 ~k   88 (108)
T COG2811          87 SK   88 (108)
T ss_pred             HH
Confidence            65

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=85.79  E-value=2.3  Score=39.61  Aligned_cols=55  Identities=24%  Similarity=0.124  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhh-----hhhHHHHHHHhcC
Q 026063          130 RLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVD-----GLRDSVLAFSENV  184 (244)
Q Consensus       130 ~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Ae-----a~a~a~~~~a~a~  184 (244)
                      +...+..|++|......+-++|+.++...|.+||+....+|+     +++.-++++.+++
T Consensus       302 k~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLeal  361 (428)
T KOG2668|consen  302 KELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEAL  361 (428)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            334555666666666666666666666666666666655543     3334455565555

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=85.17  E-value=1.5  Score=37.13  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=13.3

Q ss_pred             hhhHHHhhHhhchhhHHHHHHHhhhh
Q 026063          148 AEGEAESKYLAGLGIARQRQAIVDGL  173 (244)
Q Consensus       148 Aeaeaea~~~~AeaeAea~~~~Aea~  173 (244)
                      |+.++++.+.+|+|++++.++.++|+
T Consensus       156 A~~~~~a~i~~A~ge~~a~~~~aea~  181 (215)
T cd03403         156 AEREKRAKIIEAEGERQAAILLAEAA  181 (215)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34444455555555555555555553

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>PTZ00491 major vault protein; Provisional

Probab=84.95  E-value=7.2  Score=40.33  Aligned_cols=23  Identities=9%  Similarity=0.195  Sum_probs=12.4

Q ss_pred             cCcEEEEEEeeeccchHHHHHHH
Q 026063           98 YGYEIVQTLIVDIEPDEHVKRAM  120 (244)
Q Consensus        98 ~GI~V~~V~I~~i~~p~~i~~ai  120 (244)
                      ++|.|.+|+..|-..-+.+++++
T Consensus       631 t~VDvqsvEpvD~~tr~~LqkSV  653 (850)
T PTZ00491        631 TNVDVQSVEPVDERTRDSLQKSV  653 (850)
T ss_pred             EEEeeeeeeecCHHHHHHHHHHH
Confidence            44555555555555555555444

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=84.09  E-value=4.2  Score=34.73  Aligned_cols=8  Identities=0%  Similarity=0.160  Sum_probs=3.8

Q ss_pred             CCcEEEec
Q 026063          213 KTNSVFIP  220 (244)
Q Consensus       213 ~~~~ivlp  220 (244)
                      +.-.|++|
T Consensus       119 ~~~~I~~~  126 (198)
T PRK01558        119 DKLEIILN  126 (198)
T ss_pred             CCeeEEEC
Confidence            33345555

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=81.02  E-value=12  Score=31.24  Aligned_cols=44  Identities=20%  Similarity=0.046  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhh
Q 026063          119 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGI  162 (244)
Q Consensus       119 ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~Aeae  162 (244)
                      .+-..+..+-++++..+.+++++++..+.+++++++..+..++.
T Consensus         5 ~i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~   48 (188)
T PRK02292          5 TVVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDRE   48 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666667777777777776666666665555443

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=80.83  E-value=14  Score=30.97  Aligned_cols=20  Identities=25%  Similarity=-0.117  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 026063          128 RLRLAANEKAEAEKILQIKR  147 (244)
Q Consensus       128 r~~~A~~~~Aegek~a~i~~  147 (244)
                      -++++....+++++++..+.
T Consensus        25 a~~~~~~i~~ea~~~a~~i~   44 (188)
T PRK02292         25 ADEEAEEIIAEAEADAEEIL   44 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444455554444443

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=80.28  E-value=7.3  Score=28.74  Aligned_cols=51  Identities=8%  Similarity=0.141  Sum_probs=42.3

Q ss_pred             hHHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeec
Q 026063           58 SCLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI  110 (244)
Q Consensus        58 ~~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i  110 (244)
                      ..+++.+-..+++++.+++-+  +++.+..++.+.+++.+.+  -.|.+|.++++
T Consensus        44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f   96 (99)
T PF03748_consen   44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF   96 (99)
T ss_pred             HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence            458889999999999999986  6899999999999988843  34888888765

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>PLN03086 PRLI-interacting factor K; Provisional

Probab=80.01  E-value=4.1  Score=40.38  Aligned_cols=27  Identities=11%  Similarity=0.438  Sum_probs=16.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEecCCCCchhHHHH
Q 026063          200 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIAS  231 (244)
Q Consensus       200 ryleal~~i~~~~~~~~ivlp~~~~~~~~~~~  231 (244)
                      +-|+++...   ++++.|+||  |+-|.++..
T Consensus        80 ~~~~~~~~~---~~GdKI~LP--pSaL~~L~~  106 (567)
T PLN03086         80 RIFEAVSFQ---GNGDKIKLP--PSCFTELSD  106 (567)
T ss_pred             EEeeccccC---CCCCeEEcC--HHHHHHHHh
Confidence            344444433   566789999  776666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 11/65 (16%), Positives = 27/65 (41%)

Query: 64  IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123
           +R+ +  L ++  ++ ++  AK V E     +   G EI+   I D+        ++ + 
Sbjct: 76  LRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKT 135

Query: 124 NAAAR 128
             +  
Sbjct: 136 QTSGP 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 45/208 (21%)

Query: 50  SLQEILTTSCLGLVIRASVPKLDLDATF-----EQKNDIAKAVEEELEK----AMSHYGY 100
             + IL+   +  +I +          F     +Q+  + K VEE L       MS    
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 101 EIVQTLIVDIEPDEHVKRAMNEINAAARL---RLAANEKAEAEKILQIKRAEGEAES-KY 156
           E  Q  ++     E   R  N+    A+    RL        +  L++++A  E    K 
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--------QPYLKLRQALLELRPAKN 152

Query: 157 L-----AGLGIARQRQAIV-DGLRDSVL--AFSENV------PGTSSKDVMDMV--LVTQ 200
           +      G G    +  +  D      +       +         S + V++M+  L+ Q
Sbjct: 153 VLIDGVLGSG----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 201 YFDTMKEIGASSKTNSVFIPHGPGAVKD 228
             D      +   +N   I     +++ 
Sbjct: 209 -IDPNWTSRSDHSSN---IKLRIHSIQA 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.93
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.84
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.66
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.61
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	97.16

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.93  E-value=2.8e-25  Score=186.56  Aligned_cols=154  Identities=16%  Similarity=0.212  Sum_probs=118.4

Q ss_pred             ccccccccccceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEE
Q 026063           23 EPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEI  102 (244)
Q Consensus        23 ~~~~~~l~~~~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V  102 (244)
                      +.+.++++. ++.|+|.||.+++|.+.|+...+. +.+++++|+++|++++++++++|++|+..|++.+++.+++|||.|
T Consensus        27 D~~~V~v~~-~v~yrI~dp~~~~~~v~~~~~~i~-~~~~~~lR~vig~~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v  104 (188)
T 3bk6_A           27 DNVPVRVNA-VVYFRVVDPVKAVTQVKNYIMATS-QISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKV  104 (188)
T ss_dssp             TSCEEEEEE-EEEEEESCHHHHHHSSSCHHHHHH-HHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEE
T ss_pred             CCCEEEEEE-EEEEEECCHHHHHHHhcCHHHHHH-HHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEE
Confidence            333344443 358999999999999999999887 799999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063          103 VQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE  182 (244)
Q Consensus       103 ~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~  182 (244)
                      .+|+|++|.||+++.++|+++++|||+++|.+.+|||++++....++                          +.+.++.
T Consensus       105 ~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~--------------------------a~~~~~~  158 (188)
T 3bk6_A          105 TAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLRE--------------------------AAEIISE  158 (188)
T ss_dssp             EEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHH
T ss_pred             EEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------------------HHHHHHh
Confidence            99999999999999999999999999888777777776664333222                          1223332


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHHhcCCCC
Q 026063          183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKT  214 (244)
Q Consensus       183 a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~  214 (244)
                            +|.++    .+|||++++++++++++
T Consensus       159 ------~~~~l----~lr~le~~~~ia~~~~~  180 (188)
T 3bk6_A          159 ------HPMAL----QLRTLQTISDVAGDKSN  180 (188)
T ss_dssp             ------CTTHH----HHHHTTC----------
T ss_pred             ------CHHHH----HHHHHHHHHHHhcCCCC
Confidence                  24543    68899999999854443

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.84  E-value=3.2e-21  Score=153.81  Aligned_cols=93  Identities=14%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccc
Q 026063           33 FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEP  112 (244)
Q Consensus        33 ~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~  112 (244)
                      ++.|+|.||.+++|+|.|++.++. .+++++||+++|++++++++++|++|+..+++.+++.+++|||+|.+|+|++++|
T Consensus        41 ~v~yrI~Dp~~~~~~v~~~~~~l~-~~~~~~lR~vig~~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~  119 (133)
T 4fvg_A           41 VVYYRVQNATLAVANITNADSATR-LLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKL  119 (133)
T ss_dssp             EEEEEESCHHHHHHSSSCHHHHHH-HHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEC
T ss_pred             EEEEEEeehHHhHhhhhhHHHHHH-HHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCC
Confidence            557899999999999999999998 7999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHH
Q 026063          113 DEHVKRAMNEINAA  126 (244)
Q Consensus       113 p~~i~~ai~~~~~A  126 (244)
                      |+++++||+++|+|
T Consensus       120 P~~v~~am~~~~~A  133 (133)
T 4fvg_A          120 PVQLQRAMAAEAEA  133 (133)
T ss_dssp             CCC-----------
T ss_pred             CHHHHHHHHHHhcC
Confidence            99999999988775

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.66  E-value=2.3e-17  Score=132.93  Aligned_cols=95  Identities=14%  Similarity=0.224  Sum_probs=81.8

Q ss_pred             ceEEEEe-ecccceeeccch----HH---HHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEE
Q 026063           33 FISSAIL-DRRSKRMSLMSL----QE---ILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQ  104 (244)
Q Consensus        33 ~~~~~i~-d~~~~~~~v~~~----~~---~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~  104 (244)
                      ++.|+|. ||.++++.++++    ..   .+..+.++++||+++|+++++|++++|++|+..|++.+++.+++|||+|.+
T Consensus        37 vv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~  116 (143)
T 1win_A           37 VAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILS  116 (143)
T ss_dssp             EEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            4578998 577777766552    12   223367899999999999999999999999999999999999999999999


Q ss_pred             EEeeeccchHHHHHHHHHHHHHH
Q 026063          105 TLIVDIEPDEHVKRAMNEINAAA  127 (244)
Q Consensus       105 V~I~~i~~p~~i~~ai~~~~~Ae  127 (244)
                      |+|++|++|+++.+||+++++||
T Consensus       117 v~IkdI~~p~~~~~am~~~~~Ae  139 (143)
T 1win_A          117 FTIKDVYDKVDYLSSLGKTQTSG  139 (143)
T ss_dssp             EECCCEECTTCHHHHHCCCCCCC
T ss_pred             EEEEeecChHHHHHHHHHHHhhc
Confidence            99999999999999998877665

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.61  E-value=5.7e-16  Score=119.25  Aligned_cols=91  Identities=18%  Similarity=0.292  Sum_probs=81.8

Q ss_pred             ccccccccccceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEE
Q 026063           23 EPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEI  102 (244)
Q Consensus        23 ~~~~~~l~~~~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V  102 (244)
                      +...++++. ++.|+|.||.+++|++.|+...+. +.+++++|+++|++++++++++|++|+..+++.+++.+++|||+|
T Consensus        23 D~~~v~v~~-~v~~rI~dp~~~~~~v~~~~~~l~-~~~~~~lR~vig~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v  100 (113)
T 2rpb_A           23 DNVVVTVDA-VVYYQVIDPVKAVYNVSDFLMAIV-KLAQTNLRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKI  100 (113)
T ss_dssp             TSCEEEECE-EEEEEESCTTTCTTTTTHHHHHHH-HHHHHHHHHHHTSCCTTHHHHCHHHHHHHHHHHHHHHHGGGTEEC
T ss_pred             CCCEEEEEE-EEEEEECCHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcCcHHHHHhCHHHHHHHHHHHHHHHHHhcCeEE
Confidence            333334443 468999999999999999998877 799999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeccchHH
Q 026063          103 VQTLIVDIEPDEH  115 (244)
Q Consensus       103 ~~V~I~~i~~p~~  115 (244)
                      .+|+|+++.||++
T Consensus       101 ~~v~I~~i~~p~e  113 (113)
T 2rpb_A          101 TRVEIQRIDPPKD  113 (113)
T ss_dssp             CCEEECCCBCCCC
T ss_pred             EEEEEEEecCCCC
Confidence            9999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=97.16  E-value=0.0054  Score=60.96  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=44.7

Q ss_pred             ceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHH-HHHHHHHHH-----------------HHHhhcCcEEEEE
Q 026063           44 KRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDI-AKAVEEELE-----------------KAMSHYGYEIVQT  105 (244)
Q Consensus        44 ~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i-~~~I~~~l~-----------------~~~~~~GI~V~~V  105 (244)
                      ..|+|.|.---.- ..+.+.+|..+++.++|+.-.+-..| ...+.-.=.                 -.+...|+.|.+|
T Consensus       560 k~Fsv~DFvGd~C-k~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~~~~~~~~~~F~~N~lvitsV  638 (861)
T 2zuo_A          560 KLFSVPDFVGDAC-KAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSV  638 (861)
T ss_dssp             GGGSSSSHHHHHH-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-------------CCCSCEECTTTCEEEEEE
T ss_pred             hhccCCchHHHHH-HHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccccccCcccceEEccCCeEEEEE
Confidence            4555555433344 25788999999999999997643333 222211000                 0144569999999


Q ss_pred             EeeeccchH
Q 026063          106 LIVDIEPDE  114 (244)
Q Consensus       106 ~I~~i~~p~  114 (244)
                      .|+++.|-+
T Consensus       639 DvqsvEpvD  647 (861)
T 2zuo_A          639 DVQSVEPVD  647 (861)
T ss_dssp             EEEEEEESS
T ss_pred             eeeeecccC
Confidence            999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	9e-08

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (113), Expect = 9e-08
 Identities = 11/65 (16%), Positives = 27/65 (41%)

Query: 64  IRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123
           +R+ +  L ++  ++ ++  AK V E     +   G EI+   I D+        ++ + 
Sbjct: 76  LRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKT 135

Query: 124 NAAAR 128
             +  
Sbjct: 136 QTSGP 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.56

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=7.4e-16  Score=122.03  Aligned_cols=93  Identities=14%  Similarity=0.256  Sum_probs=84.8

Q ss_pred             ceEEEEeecccce---------eeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEE
Q 026063           33 FISSAILDRRSKR---------MSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIV  103 (244)
Q Consensus        33 ~~~~~i~d~~~~~---------~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~  103 (244)
                      .+.|+|.|+.++.         |+++|++..+. +.+++++|+++|++++++++++|++|+..|++.+++.+++|||+|.
T Consensus        37 ~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~-~~~~~~lR~vig~~~l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~  115 (143)
T d1wina_          37 VAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL-QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEIL  115 (143)
T ss_dssp             EEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred             EEEEEEcCcHHHHHHHHHhhccccHHHHHHHHH-HHHHHHHHHHhccccHHHHHhCHHHHHHHHHHHHHHHHHHhCeEEE
Confidence            4578999988755         57788888888 7999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeccchHHHHHHHHHHHHH
Q 026063          104 QTLIVDIEPDEHVKRAMNEINAA  126 (244)
Q Consensus       104 ~V~I~~i~~p~~i~~ai~~~~~A  126 (244)
                      +|.|+||.+|+++.++|+++..|
T Consensus       116 ~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_         116 SFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             EEECCCEECTTCHHHHHCCCCCC
T ss_pred             EEEEEecCCcHHHHHHHHHHHHh
Confidence            99999999999999999876544