Citrus Sinensis ID: 026088

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---

MEQGRKRVSPVSVFFAFFCFLLLRLLCFSGSAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYDDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSHGKGLPESLKSPSEQSPAPNSADYNNDESAPDLVVPSTFNKPRGNQNSNDDDDGDNVKKQSGAVSLLAKYLDWKFNGILFLLGIISIF

cccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccHHHHHccccccccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccEEEEccccccEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccc

ccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHccEEEccccccccccccccccHHHHHcccEEEEccEEEEEEccccEEEEEEcccccccccccccccccccEEcccccccccccccEEEEEccccccEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEc

meqgrkrvspVSVFFAFFCFLLLRLLCFSgsaeayknytvgdslgwydsqekpavdyqqwadaknfslgdflifntdtnhsvvqtynfttykecdyddaldsdtklwsaadpsntatsgvtvpvpllkegttyffssdydgdqcrsgqhfkinvshgkglpeslkspseqspapnsadynndesapdlvvpstfnkprgnqnsnddddgdnvkkqSGAVSLLAKYLDWKFNGILFLLGIISIF

meqgrkrvspvSVFFAFFCFLLLRLLCFSGSAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYDDALDSDTKLWsaadpsntatsgvtvpvplLKEGTTYFFSSDYDGDQCRSGQHFKINVSHGKGLPESLKSPSEQSPAPNSADYNNDESAPDLVVPSTFNKPRGnqnsnddddgdnvKKQSGAVSLLAKYLDWKFNGILFLLGIISIF

MEQGRKRVSPVSVffaffcflllrllcfSGSAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYDDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSHGKGLPESLKSPSEQSPAPNSADYNNDESAPDLVVPSTFNKPRgnqnsnddddgdnvkkqsGAVSLLAKYLDWKFNgilfllgiisif

**********VSVFFAFFCFLLLRLLCFSGSAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYDDALDSDTKLWSAA*****ATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKI*****************************************************************AVSLLAKYLDWKFNGILFLLGIISI*

**************FAFFCFLLLRLLCFSGSAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYDDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINV*******************************************************************LAKYLDWKFNGILFLLGIISIF

*********PVSVFFAFFCFLLLRLLCFSGSAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYDDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSHGKGL********************NDESAPDLVVPSTFNKPRGNQNSNDDDDGDNVKKQSGAVSLLAKYLDWKFNGILFLLGIISIF

******RVSPVSVFFAFFCFLLLRLLCFSGSAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYDDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSHGKGLP*****************************************************QSGAVSLLAKYLDWKFNGILFLLGIISIF

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		243	2.2.26 [Sep-21-2011]
Q39131		172	Lamin-like protein OS=Ara	no	no	0.543	0.767	0.245	4e-05
Q41001		189	Blue copper protein OS=Pi	N/A	no	0.395	0.507	0.310	0.0001
P80728		108	Mavicyanin OS=Cucurbita p	N/A	no	0.411	0.925	0.305	0.0002

>sp\|Q39131\|LAML_ARATH Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1	Back alignment and function desciption

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 27/159 (16%)

Query: 36  KNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECD 95
           K YTVG++  W      P ++Y  WA  K+F LGD+L F  D N   +   N T Y+ C 
Sbjct: 27  KKYTVGENKFW-----NPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCI 81

Query: 96  YDDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVS 155
            D              P    T G    +  L +   Y+      G  C  G    + V 
Sbjct: 82  AD-------------HPIRNWTRGAGRDIVTLNQTKHYYLLDGKGG--CYGGMKLSVKV- 125

Query: 156 HGKGLPESLKSPSEQSPAPNSADYNNDESAPDLVVPSTF 194
                 E L  P + +P  N    +        ++P + 
Sbjct: 126 ------EKLPPPPKSAPVKNIGSVSMVTGLAQFMIPVSL 158

Arabidopsis thaliana (taxid: 3702)

>sp\|Q41001\|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1	Back alignment and function description

>sp\|P80728\|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		243
255564516		269	copper ion binding protein, putative [Ri	0.962	0.869	0.606	5e-79
388494060		245	unknown [Lotus japonicus]	0.995	0.987	0.597	9e-76
388497266		240	unknown [Lotus japonicus]	0.975	0.987	0.597	4e-74
357493827		240	Early nodulin-like protein [Medicago tru	0.979	0.991	0.595	5e-73
351726524		234	uncharacterized protein LOC100499721 pre	0.954	0.991	0.634	3e-72
351724015		237	uncharacterized protein LOC100526961 pre	0.810	0.831	0.707	5e-71
224055277		230	predicted protein [Populus trichocarpa]	0.835	0.882	0.640	9e-71
147794520		271	hypothetical protein VITISV_003566 [Viti	0.843	0.756	0.619	3e-70
225435888		232	PREDICTED: uncharacterized protein LOC10	0.843	0.883	0.619	7e-70
296083904		228	unnamed protein product [Vitis vinifera]	0.843	0.899	0.619	1e-69

>gi\|255564516\|ref\|XP_002523254.1\| copper ion binding protein, putative [Ricinus communis] gi\|223537550\|gb\|EEF39175.1\| copper ion binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/249 (60%), Positives = 187/249 (75%), Gaps = 15/249 (6%)

Query: 1   MEQGRKRVSPVSVFFA------FFCFLLLRLLCFSGSAEAYKNYTVGDSLGWYDSQEKPA 54
           MEQ  +R+S +S+ F+          ++L L+  SGSA+AYKNYTVGDSLGWYDS EKP 
Sbjct: 29  MEQ--RRLSHLSLSFSCLHIHMHLLVVVLALISISGSADAYKNYTVGDSLGWYDSTEKPN 86

Query: 55  VDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYDDALDSDTKLWSAADPSN 114
           ++YQ+WAD+KNFSLGDFLIFNT+ NHSVVQTYN TTY+ CDYD+AL++DT  WS  DPSN
Sbjct: 87  LNYQKWADSKNFSLGDFLIFNTNNNHSVVQTYNLTTYELCDYDNALENDTIEWSTTDPSN 146

Query: 115 TATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSHGKGLPESLKSPSEQSPAP 174
           TAT GVTV VPLLKEG TYFFS DYDGDQC+SG HF INV+HGKGLPESLKSPSEQ+PAP
Sbjct: 147 TATFGVTVDVPLLKEGITYFFSGDYDGDQCKSGMHFNINVTHGKGLPESLKSPSEQAPAP 206

Query: 175 NSADYNNDESAPDLVVPSTFNKPRGNQNSNDDDDGDNVKKQSGAVSLLAKYLDWKFNGIL 234
           NS D   D+SAPD +VP+ F+ P+   +        +  + SG++S+    LD K NG+L
Sbjct: 207 NSPDVTGDDSAPDTIVPANFDHPQDVSDD-------DDAEDSGSISVYLNLLDRKLNGVL 259

Query: 235 FLLGIISIF 243
            L G++ +F
Sbjct: 260 LLFGVVCMF 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|388494060\|gb\|AFK35096.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|388497266\|gb\|AFK36699.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|357493827\|ref\|XP_003617202.1\| Early nodulin-like protein [Medicago truncatula] gi\|355518537\|gb\|AET00161.1\| Early nodulin-like protein [Medicago truncatula] gi\|388513429\|gb\|AFK44776.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|351726524\|ref\|NP_001235082.1\| uncharacterized protein LOC100499721 precursor [Glycine max] gi\|255626063\|gb\|ACU13376.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|351724015\|ref\|NP_001236531.1\| uncharacterized protein LOC100526961 precursor [Glycine max] gi\|255631256\|gb\|ACU15995.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|224055277\|ref\|XP_002298457.1\| predicted protein [Populus trichocarpa] gi\|222845715\|gb\|EEE83262.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147794520\|emb\|CAN75991.1\| hypothetical protein VITISV_003566 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225435888\|ref\|XP_002265702.1\| PREDICTED: uncharacterized protein LOC100244402 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296083904\|emb\|CBI24292.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		243
TAIR\|locus:2201801		228	ENODL18 "early nodulin-like pr	0.691	0.736	0.597	2.5e-56
TAIR\|locus:2086518		174	AT3G27200 [Arabidopsis thalian	0.395	0.551	0.316	1.6e-08
TAIR\|locus:4010713753		106	AT3G17675 [Arabidopsis thalian	0.395	0.905	0.310	1.4e-06
TAIR\|locus:2017819		192	ENODL7 "early nodulin-like pro	0.288	0.364	0.305	1.2e-05
TAIR\|locus:2085775		203	ENODL9 "early nodulin-like pro	0.510	0.610	0.270	5.1e-05
TAIR\|locus:2150951		172	ENODL17 "early nodulin-like pr	0.263	0.372	0.366	5.2e-05
TAIR\|locus:2151069		187	AT5G26330 [Arabidopsis thalian	0.489	0.636	0.278	0.0003
TAIR\|locus:504956334		192	AT5G07475 [Arabidopsis thalian	0.251	0.317	0.373	0.00045

TAIR\|locus:2201801 ENODL18 "early nodulin-like protein 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 101/169 (59%), Positives = 136/169 (80%)

Query:    31 SAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTT 90
             SA+AYKNYTVG+S GW+D QE+P+ +YQ+WAD+K+FSLGDFLIFNTD+NHSVVQTY+F T
Sbjct:    23 SADAYKNYTVGESTGWFDIQERPSANYQKWADSKSFSLGDFLIFNTDSNHSVVQTYDFKT 82

Query:    91 YKECDYDDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHF 150
             YK+CDYD+  ++DT  WSAA+PS T+   V++ VPL+KEG+ YFFS +YDG+QC+ GQHF
Sbjct:    83 YKDCDYDNNENNDTTEWSAANPSATSPVPVSISVPLVKEGSNYFFSGNYDGEQCKFGQHF 142

Query:   151 KINVSHGKGLPESLKSPSEQSPAPN-SADYNNDESAPDLVVPSTFNKPR 198
              INV+HG+GLP+S       +P P+ S+   +DE APD +VP+ F+ P+
Sbjct:   143 MINVTHGQGLPDSSSPDDAAAPGPSESSQSGDDEVAPDTIVPANFDHPK 191

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR\|locus:2086518 AT3G27200 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:4010713753 AT3G17675 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017819 ENODL7 "early nodulin-like protein 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2150951 ENODL17 "early nodulin-like protein 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504956334 AT5G07475 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_I1965	hypothetical protein (230 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		243
pfam02298		84	pfam02298, Cu_bind_like, Plastocyanin-like domain	4e-14
PLN03148		167	PLN03148, PLN03148, Blue copper-like protein; Prov	2e-05

>gnl\|CDD\|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain	Back alignment and domain information

 Score = 65.4 bits (160), Expect = 4e-14
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 18/94 (19%)

Query: 56  DYQQWADAKNFSLGDFLIFNTDTN-HSVVQTYNFTTYKECDYDDALDSDTKLWSAADPSN 114
           DY  WA  K F +GD L+FN D   H+VV+      Y+ C+                P  
Sbjct: 8   DYTLWASGKTFRVGDTLVFNYDKGFHNVVEV-TKADYESCNTS-------------KPIR 53

Query: 115 TATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQ 148
           T T+G  + +PL K G  YF         C+ GQ
Sbjct: 54  TYTTGNDI-IPLTKPGQHYFICGVP--GHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl\|CDD\|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		243
PLN03148		167	Blue copper-like protein; Provisional	100.0
PF02298		85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.94
PRK02710		119	plastocyanin; Provisional	98.24
COG3794		128	PetE Plastocyanin [Energy production and conversio	97.77
PF00127		99	Copper-bind: Copper binding proteins, plastocyanin	97.72
TIGR03102		115	halo_cynanin halocyanin domain. Halocyanins are bl	97.59
TIGR02656		99	cyanin_plasto plastocyanin. Members of this family	97.51
TIGR02375		116	pseudoazurin pseudoazurin. Pseudoazurin, also call	97.19
PF06525		196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	96.32
TIGR02657		83	amicyanin amicyanin. Members of this family are am	96.02
TIGR03095		148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	93.97
TIGR03094		195	sulfo_cyanin sulfocyanin. Members of this family a	93.86
PF13473		104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	88.73

>PLN03148 Blue copper-like protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=2e-37  Score=263.53  Aligned_cols=103  Identities=32%  Similarity=0.637  Sum_probs=89.7

Q ss_pred             ccccceEEEecCCCCCccCCCCCCcChhhhccCCceeeCCEEEEEecC-CCceEEEecCcCccCCCCCCCCCcccccccc
Q 026088           31 SAEAYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDT-NHSVVQTYNFTTYKECDYDDALDSDTKLWSA  109 (243)
Q Consensus        31 ~aaaa~~y~VGd~~GW~~~~~~~~~~Y~~WAs~k~F~VGDsLvF~Y~~-~HsVvqV~~~~~Yd~C~~~~~i~~~t~~~s~  109 (243)
                      ..+++++|+|||+.||+     ++.+|++||++|+|++||+|+|+|++ .|||+|| +|++|++|+..+++.+    |+ 
T Consensus        16 ~~~~a~~~~VGd~~GW~-----~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V-~~~~Y~~C~~~~pi~~----~t-   84 (167)
T PLN03148         16 SATTATDHIVGANKGWN-----PGINYTLWANNQTFYVGDLISFRYQKTQYNVFEV-NQTGYDNCTTEGAAGN----WT-   84 (167)
T ss_pred             hhccceEEEeCCCCCcC-----CCCChhHhhcCCCCccCCEEEEEecCCCceEEEE-ChHHcCcccCCCCcce----ec-
Confidence            34567899999999998     35789999999999999999999987 7999998 9999999999998753    22 


Q ss_pred             CCCCCCCCCCceEEEEcCCcCceEEEEeCCCcccccCCCeEEEEEeC
Q 026088          110 ADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSH  156 (243)
Q Consensus       110 g~p~nt~~~g~t~~V~L~~~G~~YFicg~~~g~HC~~GmKl~I~V~~  156 (243)
                              +|. +.|+|+++|++||||+.   +||++||||+|+|..
T Consensus        85 --------sG~-d~v~L~~~G~~YFIcg~---ghC~~GmKl~I~V~~  119 (167)
T PLN03148         85 --------SGK-DFIPLNKAKRYYFICGN---GQCFNGMKVTILVHP  119 (167)
T ss_pred             --------CCC-cEEEecCCccEEEEcCC---CccccCCEEEEEEcC
Confidence                    233 37999999999999994   699999999999964

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]	Back alignment and domain information

>PRK02710 plastocyanin; Provisional	Back alignment and domain information

>COG3794 PetE Plastocyanin [Energy production and conversion]	Back alignment and domain information

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]	Back alignment and domain information

>TIGR03102 halo_cynanin halocyanin domain	Back alignment and domain information

>TIGR02656 cyanin_plasto plastocyanin	Back alignment and domain information

>TIGR02375 pseudoazurin pseudoazurin	Back alignment and domain information

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus	Back alignment and domain information

>TIGR02657 amicyanin amicyanin	Back alignment and domain information

>TIGR03095 rusti_cyanin rusticyanin	Back alignment and domain information

>TIGR03094 sulfo_cyanin sulfocyanin	Back alignment and domain information

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		243
1ws7_A		109	Crystal Structure Of Mavicyanin From Cucurbita Pepo		2e-05

>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109

Back alignment and structure

Iteration: 1

Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 21/121 (17%) Query: 38 YTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTN-HSVVQTYNFTTYKECDY 96 + VGDS GW DY +WA + F +GD L+FN + H+V+Q + +K C+ Sbjct: 5 HKVGDSTGW---TTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQV-DQEQFKSCN- 59 Query: 97 DDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSH 156 ++ P+ + TSG +PL + GT YF C+ GQ +I V Sbjct: 60 ------------SSSPAASYTSGAD-SIPLKRPGTFYFLCG--IPGHCQLGQKVEIKVDP 104 Query: 157 G 157 G Sbjct: 105 G 105

PyMOL of 1ws7

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		243
1jer_A		138	Cucumber stellacyanin; electron transport, copper,	7e-23
1x9u_A		116	Umecyanin; cupredoxin, phytocyanin, copper binding	9e-23
1ws8_A		109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	9e-23
2cbp_A		96	Cucumber basic protein; electron transport, phytoc	7e-19
1f56_A		91	Plantacyanin; cupredoxin, copper protein, beta bar	5e-15

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138	Back alignment and structure

 Score = 89.7 bits (222), Expect = 7e-23
 Identities = 38/150 (25%), Positives = 53/150 (35%), Gaps = 19/150 (12%)

Query: 38  YTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDT-NHSVVQTYNFTTYKECDY 96
           + VGD+ GW  S       Y QWA  K F +GD L FN     H+V +     ++  C+ 
Sbjct: 6   HIVGDNTGW--SVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN- 62

Query: 97  DDALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVSH 156
                         +  N       V   L + G  YF  +   G  C +GQ   INV  
Sbjct: 63  ------------FVNSDNDVERTSPVIERLDELGMHYFVCT--VGTHCSNGQKLSINVVA 108

Query: 157 GKGLPESLKSPSEQSPAPNSADYNNDESAP 186
                 S+  PS   P+           +P
Sbjct: 109 ANATV-SMPPPSSSPPSSVMPPPVMPPPSP 137

PyMOL of 1jer

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116	Back alignment and structure

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109	Back alignment and structure

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96	Back alignment and structure

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		243
1jer_A		138	Cucumber stellacyanin; electron transport, copper,	100.0
1ws8_A		109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	100.0
1x9u_A		116	Umecyanin; cupredoxin, phytocyanin, copper binding	100.0
2cbp_A		96	Cucumber basic protein; electron transport, phytoc	99.98
1f56_A		91	Plantacyanin; cupredoxin, copper protein, beta bar	99.96
1qhq_A		140	Protein (auracyanin); electron transfer, cupredoxi	98.92
2cal_A		154	Rusticyanin; iron respiratory electron transport c	98.88
1bxv_A		91	Plastocyanin; copper protein, electron transfer; 1	98.83
1pmy_A		123	Pseudoazurin; electron transfer(cuproprotein); 1.5	98.68
1paz_A		123	Pseudoazurin precursor; electron transfer(cupropro	98.66
3ef4_A		124	Pseudoazurin, blue copper protein; electron transf	98.54
2gim_A		106	Plastocyanin; beta sheet, Cu, helix, electron tran	98.5
3erx_A		123	Pseudoazurin; copper protein, high-resolution, E t	98.46
1iuz_A		98	Plastocyanin; electron transport; 1.60A {Ulva pert	98.46
3tu6_A		127	Pseudoazurin (blue copper protein); cupredoxins, b	98.45
1plc_A		99	Plastocyanin; electron transport; 1.33A {Populus n	98.4
2aan_A		139	Auracyanin A; cupredoxin fold, electron transport;	98.39
1b3i_A		97	PETE protein, protein (plastocyanin); electron tra	98.36
1kdj_A		102	Plastocyanin; electron transfer, photosystem, PAI-	98.36
2plt_A		98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.29
1byp_A		99	Protein (plastocyanin); electron transfer, photosy	98.25
1pcs_A		98	Plastocyanin; electron transport; 2.15A {Synechocy	98.23
3c75_A		132	Amicyanin; copper proteins, electron transfer comp	98.01
3cvb_A		105	Plastocyanin; cupredoxin, SELF assembly, copper, e	97.75
4hci_A		100	Cupredoxin 1; structural genomics, niaid, national	97.73
2ov0_A		105	Amicyanin; beta-sandwich, electron transport; 0.75	97.63
2ux6_A		122	Pseudoazurin; type-1 copper, metal-binding, redox	97.54
1id2_A		106	Amicyanin; beta barrel, type-1 blue copper protein	97.44
3ay2_A		167	Lipid modified azurin protein; beta sandwich, bact	97.18
1cuo_A		129	Protein (azurin ISO-2); beta barrel, periplasmic,	96.9
1iko_P		178	Ephrin-B2; greek KEY, glycosylation, signaling pro	96.39
1nwp_A		128	Azurin; electron transport, cupredoxin, electron t	96.28
2iaa_C		128	Azurin; quinoprotein, tryptophan tryptophylquinone	96.16
2ccw_A		129	Azurin II, AZN-2; electron transport (cuproprotein	96.09
3czu_B		182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	94.54
2cua_A		135	Protein (CUA); CUA center, electron transport; 1.6	93.78
1iby_A		112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	91.18
2x11_B		177	Ephrin-A5; receptor-signaling protein complex, dev	90.85
2dv6_A		447	Nitrite reductase; electron transfer, reduction, d	89.49
3d12_B		141	Ephrin-B3; beta propeller, protein-receptor comple	87.97
2vsm_B		140	Ephrin-B2; developmental protein, henipavirus, neu	87.69
3s8f_B		168	Cytochrome C oxidase subunit 2; complex IV, respir	84.73
3fsa_A		125	Azurin; copper, cupredoxin fold, metal-binding, pr	84.56
2wo3_B		157	Ephrin-A2; transferase-signaling protein complex,	81.64
1fwx_A		595	Nitrous oxide reductase; beta-propeller domain, cu	81.2

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1	Back alignment and structure

Probab=100.00  E-value=1.1e-38  Score=262.88  Aligned_cols=118  Identities=25%  Similarity=0.425  Sum_probs=93.7

Q ss_pred             cceEEEecCCCCCccCCCCCCcChhhhccCCceeeCCEEEEEecC-CCceEEEecCcCccCCCCCCCCCccccccccCCC
Q 026088           34 AYKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDT-NHSVVQTYNFTTYKECDYDDALDSDTKLWSAADP  112 (243)
Q Consensus        34 aa~~y~VGd~~GW~~~~~~~~~~Y~~WAs~k~F~VGDsLvF~Y~~-~HsVvqV~~~~~Yd~C~~~~~i~~~t~~~s~g~p  112 (243)
                      +|++|+|||+.||++++.  ..+|++||++++|+|||+|+|+|.+ +|||+||.++++|+.|+..+++..    +     
T Consensus         2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~----~-----   70 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDND----V-----   70 (138)
T ss_dssp             CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCC----C-----
T ss_pred             CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCcccc----c-----
Confidence            357899999999998642  4789999999999999999999996 899999879999999999988752    1     


Q ss_pred             CCCCCCCceEEEEc-CCcCceEEEEeCCCcccccCCCeEEEEEeCCCCCCCCCCCCCC
Q 026088          113 SNTATSGVTVPVPL-LKEGTTYFFSSDYDGDQCRSGQHFKINVSHGKGLPESLKSPSE  169 (243)
Q Consensus       113 ~nt~~~g~t~~V~L-~~~G~~YFicg~~~g~HC~~GmKl~I~V~~~~~~p~~~~~Ps~  169 (243)
                          .+|. ++|+| +++|++||||++  ++||++||||+|+|.+..+.|++.++|+.
T Consensus        71 ----~~G~-~~v~L~~~~G~~YFicg~--~gHC~~GmKl~I~V~~~~~~~~~~p~~~~  121 (138)
T 1jer_A           71 ----ERTS-PVIERLDELGMHYFVCTV--GTHCSNGQKLSINVVAANATVSMPPPSSS  121 (138)
T ss_dssp             ----CCCS-CEEEECCSSEEEEEECCS--TTTGGGTCEEEEEEECCC-----------
T ss_pred             ----cCCC-eEEEeccCCcCEEEEcCC--CCccccCCEEEEEEcCCCCCCCCCCCCCC
Confidence                1233 38999 999999999998  78999999999999998765555444433

PyMOL of 1jer

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A	Back alignment and structure

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A	Back alignment and structure

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1	Back alignment and structure

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1	Back alignment and structure

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A	Back alignment and structure

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A	Back alignment and structure

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A	Back alignment and structure

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1	Back alignment and structure

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*	Back alignment and structure

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0	Back alignment and structure

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A	Back alignment and structure

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A	Back alignment and structure

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A	Back alignment and structure

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}	Back alignment and structure

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A	Back alignment and structure

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}	Back alignment and structure

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*	Back alignment and structure

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A	Back alignment and structure

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1	Back alignment and structure

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A	Back alignment and structure

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A	Back alignment and structure

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}	Back alignment and structure

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A	Back alignment and structure

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A	Back alignment and structure

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...	Back alignment and structure

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A	Back alignment and structure

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1	Back alignment and structure

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}	Back alignment and structure

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A	Back alignment and structure

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5	Back alignment and structure

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A	Back alignment and structure

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*	Back alignment and structure

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A	Back alignment and structure

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*	Back alignment and structure

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*	Back alignment and structure

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A	Back alignment and structure

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}	Back alignment and structure

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}	Back alignment and structure

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}	Back alignment and structure

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E	Back alignment and structure

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...	Back alignment and structure

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...	Back alignment and structure

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}	Back alignment and structure

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		243
d1ws8a_		104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	1e-20
d2cbpa_		96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	3e-20
d1jera_		110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	1e-18
d1f56a_		91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	4e-14

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104	Back information, alignment and structure


class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score = 81.6 bits (201), Expect = 1e-20
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 19/117 (16%)

Query: 38  YTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDTNHSVVQTYNFTTYKECDYD 97
           + VGDS GW         DY +WA +  F +GD L+FN +     V   +   +K C+  
Sbjct: 5   HKVGDSTGWTTL---VPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCN-- 59

Query: 98  DALDSDTKLWSAADPSNTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINV 154
                      ++ P+ + TSG    +PL + GT YF         C+ GQ  +I V
Sbjct: 60  -----------SSSPAASYTSG-ADSIPLKRPGTFYFLCG--IPGHCQLGQKVEIKV 102

PyMOL of d1ws8a_

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96	Back information, alignment and structure

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110	Back information, alignment and structure

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		243
d1ws8a_		104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	100.0
d1jera_		110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d2cbpa_		96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1f56a_		91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	99.94
d1bypa_		99	Plastocyanin {White campion (Silene pratensis) [Ta	98.82
d2plta_		98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.62
d1iuza_		98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	98.62
d1plca_		99	Plastocyanin {Poplar (Populus nigra), variant ital	98.48
d2jxma1		97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.46
d1kdja_		102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	98.44
d1adwa_		123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	98.42
d2cj3a1		105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.37
d2q5ba1		105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.31
d1paza_		120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	98.26
d1pcsa_		98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.21
d1bqka_		124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	98.19
d1pmya_		123	Pseudoazurin {Methylobacterium extorquens, strain	98.14
d1bxua_		91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	97.97
d2ov0a1		105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	97.91
d1qhqa_		139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	97.69
d1id2a_		106	Amicyanin {Paracoccus versutus (Thiobacillus versu	97.58
d1cuoa_		129	Azurin {Methylomonas sp. j [TaxId: 32038]}	96.49
d1e30a_		153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	95.94
d1ibya_		112	Red copper protein nitrosocyanin {Nitrosomonas eur	95.66
d2ccwa1		129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	94.03
d1ikop_		141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	91.74
d2cuaa_		122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	91.39
d1shxa1		138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	89.38
d1kbva1		151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	89.15
d1fwxa1		132	Nitrous oxide reductase, C-terminal domain {Paraco	88.04
d1qnia1		131	Nitrous oxide reductase, C-terminal domain {Pseudo	87.92
d1aoza1		129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	85.45
d1jzga_		128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	84.49
d1oe2a1		159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	83.12

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}	Back information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=1.8e-34  Score=224.92  Aligned_cols=101  Identities=35%  Similarity=0.651  Sum_probs=89.1

Q ss_pred             ceEEEecCCCCCccCCCCCCcChhhhccCCceeeCCEEEEEecC-CCceEEEecCcCccCCCCCCCCCccccccccCCCC
Q 026088           35 YKNYTVGDSLGWYDSQEKPAVDYQQWADAKNFSLGDFLIFNTDT-NHSVVQTYNFTTYKECDYDDALDSDTKLWSAADPS  113 (243)
Q Consensus        35 a~~y~VGd~~GW~~~~~~~~~~Y~~WAs~k~F~VGDsLvF~Y~~-~HsVvqV~~~~~Yd~C~~~~~i~~~t~~~s~g~p~  113 (243)
                      |++|+|||+.||+.++   +.+|++||++++|++||+|+|+|++ .|+|+|| ++++|++|+..+++...    +     
T Consensus         2 at~~~VGg~~gW~~~~---~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v-~~~~y~~C~~~~~~~~~----~-----   68 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLV---PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQV-DQEQFKSCNSSSPAASY----T-----   68 (104)
T ss_dssp             CCEEETTGGGCSCSSS---CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEE-CHHHHHHTCCSSCSEEE----C-----
T ss_pred             CcEEEeCCcCccCcCC---CcCHHHHhhCCcCCCCCEEEEEECCCCceEEEE-CHHHhcCCcCCCccccc----c-----
Confidence            5789999999999764   4689999999999999999999998 8999998 99999999998876421    1     


Q ss_pred             CCCCCCceEEEEcCCcCceEEEEeCCCcccccCCCeEEEEEe
Q 026088          114 NTATSGVTVPVPLLKEGTTYFFSSDYDGDQCRSGQHFKINVS  155 (243)
Q Consensus       114 nt~~~g~t~~V~L~~~G~~YFicg~~~g~HC~~GmKl~I~V~  155 (243)
                          .|. +.|+|+++|++||||+.  ++||++||||+|+|.
T Consensus        69 ----~G~-~~v~l~~~g~~yF~C~~--~~HC~~Gmkl~I~V~  103 (104)
T d1ws8a_          69 ----SGA-DSIPLKRPGTFYFLCGI--PGHCQLGQKVEIKVD  103 (104)
T ss_dssp             ----SSE-EEEECCSSEEEEEECCS--TTTTTTTCEEEEEEC
T ss_pred             ----CCC-eEEEEecCccEEEECCC--cchhhCCCEEEEEEC
Confidence                233 48999999999999998  789999999999995

PyMOL of d1ws8a_

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}	Back information, alignment and structure

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}	Back information, alignment and structure

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}	Back information, alignment and structure

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}	Back information, alignment and structure

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}	Back information, alignment and structure

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}	Back information, alignment and structure

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}	Back information, alignment and structure

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}	Back information, alignment and structure

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}	Back information, alignment and structure

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}	Back information, alignment and structure

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}	Back information, alignment and structure

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}	Back information, alignment and structure

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}	Back information, alignment and structure

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}	Back information, alignment and structure

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}	Back information, alignment and structure

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}	Back information, alignment and structure

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}	Back information, alignment and structure

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}	Back information, alignment and structure

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}	Back information, alignment and structure

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}	Back information, alignment and structure

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}	Back information, alignment and structure

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}	Back information, alignment and structure

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}	Back information, alignment and structure

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}	Back information, alignment and structure

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}	Back information, alignment and structure