Citrus Sinensis ID: 026095

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MKRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERSSSSLVPICPSCCSSTTSTSSDCISSTESSAAEKMGRERKRVRACSSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRRRPRQVLEEGWAECNV
Secondary Structure (PSIPRED)
ccccccccccccEEEEccccccccHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccc
Coil and Loop (DISEMBL)
mkracelcSQEAALhcasdeaflcfdcddrvHKANFLVARHVRQTLCSQCKsltgkfisgersssslvpicpsccssttstssdcissTESSAAEKMGRERKRVRacsssvsdisgekaAAVADSKAEGIFAIWCRrlglngnnsncNSVVVVSLASRALGLFLERTTALPLRACLAASFWfglrmcgdktvatwpnlrrleaisgVPAKLIVAVEGKIARVMAVRRRRPRQVLEEGWAECNV
Flexible Loop (DISEMBL)
MKRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKfisgersssslvpICPSCCssttstssdcissTESSaaekmgrerkrvracsssvsdisgekaaavadskAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRrleaisgvpaklivavegkiarvmavrrrrprqvleegwaecnv
Low Complexity Region (SEG)
MKRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERSSSSLVPIcpsccssttstssdcisstessAAEKMGRERKRVRACSSSVSDISGEKAAAVADSKAEGIFAIWcrrlglngnnsncnsvvvvsLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIarvmavrrrrprQVLEEGWAECNV
Disordered region (IsUnstruct)
*****ELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFIS******************************************************************KAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRR***************
Disordered Region (DISOPRED)
MKRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERSSSSLVPICPSCC******************************************************IFAIWCRRLGL**************LASRALGLFLERTTALPLRACLAASFWFGLRMC*********NLRRLEAISGVPAKLIVAVEGKIAR***************GWAECNV
Disordered Region (DISEMBL)
********SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERSSSSLVPICP****************************************************SKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRRRPRQVLE********
Disordered Region (DISPRO)
***ACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKF*SGE*S*SSL**I*******************************************************KAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRRRPRQVLEEGWAEC**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERSSSSLVPICPSCCSSTTSTSSDCISSTESSAAEKMGRERKRVRACSSSVSDISGEKAAAVADSKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRRRPRQVLEEGWAECNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9C9F4	356	Putative zinc finger prot	no	no	0.213	0.146	0.471	2e-06
Q9M9B3	319	Zinc finger protein CONST	no	no	0.423	0.322	0.327	3e-06
O23379	330	Putative zinc finger prot	no	no	0.205	0.151	0.490	4e-06
Q96502	347	Zinc finger protein CONST	no	no	0.230	0.161	0.421	1e-05
Q940T9	362	Zinc finger protein CONST	no	no	0.201	0.135	0.48	1e-05
O22800	402	Zinc finger protein CONST	no	no	0.193	0.116	0.479	2e-05
Q9SK53	294	Zinc finger protein CONST	no	no	0.201	0.166	0.5	2e-05
O82256	332	Zinc finger protein CONST	no	no	0.251	0.183	0.444	4e-05
Q9LJ44	364	Zinc finger protein CONST	no	no	0.213	0.142	0.433	4e-05
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.255	0.187	0.388	6e-05

>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 1  MKRACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKS 52
          M+R CE C +  A ++C +D A LC  CD +VH AN L  RH+R  LC  CK+
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKN 62

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9B3|COL8_ARATH Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 13/116 (11%)

Query: 3   RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGE 61
           RACELC ++ A  +CASD+AFLC  CD+ VH AN +  +H R  +C +   ++       
Sbjct: 19  RACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHER--VCLRTNEISNDV---- 72

Query: 62  RSSSSLVPICPSCCSSTTSTSSDCISSTESSAAEKMGRERKRVRACSSSVSDISGE 117
           R  ++L  +  S       T     S  E    +K+  ER+R       V +I GE
Sbjct: 73  RGGTTLTSVWHSGFRRKARTPR---SRYEKKPQQKIDDERRRE---DPRVPEIGGE 122

Arabidopsis thaliana (taxid: 3702)

>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=3 SV=2

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 1  MKRACELCSQEAAL-HCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQC 50
          M+  C+ C  E AL +C SD A LC +CD  VH AN L  RH R  LC +C
Sbjct: 1  MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKC 51

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 3  RACELCSQEA-ALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFI 58
          RAC+ C   A  ++C +D A+LC  CD RVH AN + +RH R  +C  C+S    F+
Sbjct: 14 RACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFL 70

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 3  RACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCK 51
          + C+ C S  AAL+C  D AFLC  CD +VH AN L +RH R  +C  C+
Sbjct: 4  KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCE 53

Arabidopsis thaliana (taxid: 3702)

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 4  ACELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQC 50
          ACE C +  A L C +D A LC  CD  VH AN L  +HVR  +C  C
Sbjct: 11 ACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNC 58

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 3  RACELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCK 51
          R C+ C   AA L C +D AFLC DCD ++H AN L +RH R  LC  C+
Sbjct: 6  RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCE 55

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 3  RACELCSQEAAL-HCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQC-KSLTGKFISG 60
          R C+ C    AL +C +D A LC  CD +VH AN L A+H R  LC  C +S +  F   
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70

Query: 61 ERS 63
          ERS
Sbjct: 71 ERS 73

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 1  MKRACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKS 52
          M+  C+ C + +A ++C SD A LC +CD  VH AN L  RH+R  +C +C S
Sbjct: 1  MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFS 53

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 10/72 (13%)

Query: 1  MKRACELCS-QEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFIS 59
          MK  C++C  +EA++ C +DEA LC  CD +VH AN L ++H+R +L          + S
Sbjct: 1  MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLL---------YPS 51

Query: 60 GERSSSSLVPIC 71
             +SS L  IC
Sbjct: 52 SSNTSSPLCDIC 63

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
224113263	249	predicted protein [Populus trichocarpa]	0.942	0.919	0.488	2e-53
302398747	271	COL domain class transcription factor [M	0.930	0.833	0.441	3e-49
224100517	250	predicted protein [Populus trichocarpa]	0.930	0.904	0.450	3e-44
225443341	260	PREDICTED: uncharacterized protein LOC10	0.946	0.884	0.480	5e-44
307707121	260	zinc finger protein-like protein [Vitis	0.950	0.888	0.467	2e-39
347666424	241	B-box 52 protein [Expression vector pMON	0.917	0.925	0.424	6e-37
356523084	243	PREDICTED: uncharacterized protein LOC10	0.930	0.930	0.402	4e-36
15232482	225	B-box 32 protein [Arabidopsis thaliana]	0.897	0.968	0.432	2e-35
297835080	421	hypothetical protein ARALYDRAFT_342260 [	0.851	0.491	0.401	3e-32
302825145	263	hypothetical protein SELMODRAFT_449329 [	0.888	0.821	0.305	2e-17

>gi|224113263|ref|XP_002316440.1| predicted protein [Populus trichocarpa] gi|222865480|gb|EEF02611.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/258 (48%), Positives = 159/258 (61%), Gaps = 29/258 (11%)

Query: 3   RACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGER 62
           + CELC +EA ++C SD A+LCFDCD  VH ANFLVARH R+ +CS C S+TG   SG  
Sbjct: 4   KVCELCRREAGVYCDSDAAYLCFDCDSNVHNANFLVARHARRVICSGCGSITGNPFSGHT 63

Query: 63  SSSSLVPICPSCCSSTTSTSSD-----------CISSTESSAAEKMGRERKRVRACSSS- 110
            S S V  C SC        S            CISSTE++  E     RK V+A SSS 
Sbjct: 64  PSLSRVTCC-SCSPGNKELDSISCSSSSTLSSACISSTETTRFENT---RKGVKATSSSS 119

Query: 111 -VSDISG----EKAAAVADSKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLE 165
            V +I G    ++     + ++EG+F  WC+RLGLNGN       +VV  A+RA+ L   
Sbjct: 120 SVKNIPGRSLRDRLKRSRNLRSEGVFVNWCKRLGLNGN-------LVVQRATRAMALCFG 172

Query: 166 RTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAV 225
           R  ALP R  LAASFWFGLR+CGDK+V TW NLRRLE +SGVP KLIV VE KI + +  
Sbjct: 173 RL-ALPFRVSLAASFWFGLRLCGDKSVTTWENLRRLEEVSGVPNKLIVTVEMKIEQALRS 231

Query: 226 RRRRPRQVLEEGWAECNV 243
           +R + ++ +EEGWAEC+V
Sbjct: 232 KRLQLQKEMEEGWAECSV 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398747|gb|ADL36668.1| COL domain class transcription factor [Malus x domestica]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/283 (44%), Positives = 154/283 (54%), Gaps = 57/283 (20%)

Query: 1   MKRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISG 60
           + RACELC QEA+ +C SD AFLC  CD RVH+ANFLVARH+RQ LCS CKS+ G     
Sbjct: 4   VYRACELCDQEASFYCPSDSAFLCSRCDARVHQANFLVARHLRQPLCSNCKSVAG----- 58

Query: 61  ERSSSSLVPICPSCCSSTTSTSSDC---------ISSTESSAAEKMGRERKRV--RACSS 109
              +  L  +C SC  S    S DC            +   ++ +MG  +     R   S
Sbjct: 59  ---TRDLHSLCSSC--SPEFFSGDCDGDAKSSSSSDCSACISSTEMGTTKTGYENRKSES 113

Query: 110 SVSDISGEKAA-------------------------------AVADSKAEGIFAIWCRRL 138
           SV+D+SG                                      D++AEG F  WC+RL
Sbjct: 114 SVTDVSGSNVPYKFSGMKRNILPKFSGAGRNNSVRRARARTSRSVDARAEGSFVNWCKRL 173

Query: 139 GLNGNNSNCNSVVVVSLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNL 198
           G+NGN +      VVS AS A G  LER  ++P R CLAASFWFGLR CGD++V T  NL
Sbjct: 174 GVNGNLAE----SVVSTASNAFGFCLERLASVPPRVCLAASFWFGLRFCGDRSVFTCQNL 229

Query: 199 RRLEAISGVPAKLIVAVEGKIARVMAVRRRRPRQVLEEGWAEC 241
           RR+E +SGVP KLI+AVE K+   + VRR R R  LEEGWAEC
Sbjct: 230 RRVEELSGVPVKLILAVEAKLGSELRVRRAR-RDDLEEGWAEC 271

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100517|ref|XP_002311907.1| predicted protein [Populus trichocarpa] gi|222851727|gb|EEE89274.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/253 (45%), Positives = 150/253 (59%), Gaps = 27/253 (10%)

Query: 3   RACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGER 62
           + CELC +EA L+C SD AFLCF+CD  VH ANF+V+RH+R+ +CS C SLTG   SG  
Sbjct: 4   KVCELCQREAGLYCDSDAAFLCFECDSNVHNANFVVSRHLRRVICSACNSLTGGSFSGTA 63

Query: 63  SSSSLVPICPSCCSST-------------TSTSSDCISSTESSAAEKMGRERKRVR-ACS 108
            S   V  C SC                 ++ SS CIS+TE++  E     RK V  +C 
Sbjct: 64  PSLRRV-TCLSCSPENKELDSISCSSSCSSTLSSACISTTETTRFENT---RKGVETSCV 119

Query: 109 SSV-SDISGEKAAAVADSKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERT 167
           +++ +  SG +     + ++E +F  WC RLGLNGN       +VV  A+RA+ L   R 
Sbjct: 120 TNIPARFSGGRLKRSRNLRSECVFVNWCERLGLNGN-------LVVQRATRAIALCFGRL 172

Query: 168 TALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRR 227
             LP R  LAASFWFG+R CGDK+V TW +LRRLE +SGVP K+I AVE KI   +  RR
Sbjct: 173 -VLPFRVSLAASFWFGVRSCGDKSVTTWQDLRRLEEVSGVPRKMISAVEMKIEHALRSRR 231

Query: 228 RRPRQVLEEGWAE 240
               + +EEGWA+
Sbjct: 232 LELHKNMEEGWAD 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443341|ref|XP_002264568.1| PREDICTED: uncharacterized protein LOC100241102 [Vitis vinifera]

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/262 (48%), Positives = 156/262 (59%), Gaps = 32/262 (12%)

Query: 3   RACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGER 62
           R CELC++EA+L+C SD AFLC+ CD RVH ANFLVARHVR TLCS+C  L G    G  
Sbjct: 4   RVCELCNEEASLYCGSDSAFLCWSCDARVHGANFLVARHVRHTLCSECNGLAGDTFFGVG 63

Query: 63  SSSSLVPICPSCCS---STTSTSSD-------CISSTESSAAEKMGRERKRVR--ACSSS 110
                + IC SC S   S TST  D       C+S+TE SA  K G  R++      +SS
Sbjct: 64  FQPHRL-ICRSCSSEVESETSTDHDSKSSSSPCVSTTE-SAPRKGGVSRRKAERTGFTSS 121

Query: 111 VSDISGE--------KAAAVADSKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGL 162
           VS +SG         +A +  D+KAE I   WCR+LGLNG   +C SV     AS ALG+
Sbjct: 122 VSAVSGVDSRFPSKLRARSSVDAKAEDILVNWCRKLGLNG---SCTSV-----ASHALGV 173

Query: 163 FLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARV 222
            L + T LPLR  L A+     ++ GD++  T  NL+RL  ISGVPAKLI+A E K+ARV
Sbjct: 174 CLVKLTVLPLRVSLVAAISCAAKLSGDRSAYTPQNLKRLVEISGVPAKLILAAESKLARV 233

Query: 223 --MAVRRRRPRQVLEEGWAECN 242
             M  RR R  +  EEGWAEC+
Sbjct: 234 LKMERRRPRHVRDREEGWAECS 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307707121|gb|ADN87331.1| zinc finger protein-like protein [Vitis vinifera]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/261 (46%), Positives = 153/261 (58%), Gaps = 30/261 (11%)

Query: 3   RACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGER 62
           R CELC++EA+L+C SD AFLC+ CD RVH ANFLVARHVR TLCS+C  L G    G  
Sbjct: 4   RVCELCNEEASLYCGSDSAFLCWSCDARVHGANFLVARHVRHTLCSECNGLAGDTFFGVG 63

Query: 63  SSSSLVPICPSCCSSTTSTS---------SDCISSTESSAAEKMGRERKRVR--ACSSSV 111
                + IC SC S   S +         S    ST  SA  K G  R++      +SSV
Sbjct: 64  FQPHRL-ICRSCSSEVESETSTDHDSKSSSSSCVSTTESAPRKGGVSRRKAERTGFTSSV 122

Query: 112 SDISGE--------KAAAVADSKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLF 163
           S +SG         +A +  D+KAE I   WCR+LGLNG   +C SV     AS ALG+ 
Sbjct: 123 SAVSGVDSRFPSKLRARSSVDAKAEDILVNWCRKLGLNG---SCTSV-----ASHALGVC 174

Query: 164 LERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVM 223
           L + T LPLR  L A+     ++ GD++  T  NL+RL  ISGVPAKLI+A E K+ARV+
Sbjct: 175 LVKLTVLPLRVSLVAAISCAAKLSGDRSAYTPQNLKRLVEISGVPAKLILAAESKLARVL 234

Query: 224 AVRRRRPRQVLE--EGWAECN 242
            + RRRPR V +  EGWAEC+
Sbjct: 235 KMERRRPRHVRDRVEGWAECS 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347666424|gb|AEP17822.1| B-box 52 protein [Expression vector pMON108080]

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/252 (42%), Positives = 135/252 (53%), Gaps = 29/252 (11%)

Query: 3   RACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGER 62
           + CELC Q+A+L+C SD AFLC DCD  VH ANFLVARH+R+ LCS+C    G  IS   
Sbjct: 4   KTCELCDQQASLYCPSDSAFLCSDCDAAVHAANFLVARHLRRLLCSKCNRFAGFHISSGA 63

Query: 63  SSSSLVPICPSCCSSTTSTS-SDCI-------SSTESSAAEKMGRERKRVRACSSSVSDI 114
            S  L   C SC     S   SD +       SS+ES + +++  E+KR  + SS   D 
Sbjct: 64  ISRHLSSTCSSCSPENPSADYSDSLPSSSTCVSSSESCSTKQIKVEKKRSWSGSSVTDDA 123

Query: 115 SGEKAAAVADSKAEGIFAIWCRRL------GLNGNNSNCNSVVVVSLASRALGLFLERTT 168
           S           +E +F  W R +      G+NGN           +AS AL + L +  
Sbjct: 124 SPAAKKRQRSGGSEEVFEKWSREIGLGLGLGVNGNR----------VASNALSVCLGKWR 173

Query: 169 ALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRR 228
            LP R   A SFW GLR CGD+ +A+  NL RLEAISGVP KLI+A  G +ARV   RR 
Sbjct: 174 WLPFRVAAATSFWLGLRFCGDRGLASCQNLARLEAISGVPVKLILAAHGDLARVFTHRRE 233

Query: 229 RPRQVLEEGWAE 240
                L+EGW E
Sbjct: 234 -----LQEGWGE 240

Source: Expression vector pMON108080

Species: Expression vector pMON108080

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|356523084|ref|XP_003530172.1| PREDICTED: uncharacterized protein LOC100781783 [Glycine max] gi|347666428|gb|AEP17825.1| B-box 53 protein [Expression vector pMON98939]

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/251 (40%), Positives = 128/251 (50%), Gaps = 25/251 (9%)

Query: 3   RACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGER 62
           + CELC Q A+L+C SD AFLCF CD  VH ANFLVARH+R+ LCS+C       ISG  
Sbjct: 4   KTCELCHQLASLYCPSDSAFLCFHCDAAVHAANFLVARHLRRLLCSKCNRFAAIHISGA- 62

Query: 63  SSSSLVPICPSCCSSTTSTSSDCISSTESSAAEKMGRERKRVRACSSSVSDISGEKAAAV 122
            S  L   C SC     S  SD + S+ +  +        +++A            +++V
Sbjct: 63  ISRHLSSTCTSCSLEIPSADSDSLPSSSTCVSSSESCSTNQIKAEKKRRRRRRSFSSSSV 122

Query: 123 ADSKAEG-------------IFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTA 169
            D  +               +F  W R +GL G   N N V     AS AL + L +  +
Sbjct: 123 TDDASPAAKKRRRNGGSVAEVFEKWSREIGL-GLGVNGNRV-----ASNALSVCLGKWRS 176

Query: 170 LPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRRR 229
           LP R   A SFW GLR CGD+ +AT  NL RLEAISGVPAKLI+     +ARV   RR  
Sbjct: 177 LPFRVAAATSFWLGLRFCGDRGLATCQNLARLEAISGVPAKLILGAHANLARVFTHRRE- 235

Query: 230 PRQVLEEGWAE 240
               L+EGW E
Sbjct: 236 ----LQEGWGE 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232482|ref|NP_188752.1| B-box 32 protein [Arabidopsis thaliana] gi|11994275|dbj|BAB01458.1| unnamed protein product [Arabidopsis thaliana] gi|26450753|dbj|BAC42485.1| unknown protein [Arabidopsis thaliana] gi|28950769|gb|AAO63308.1| At3g21150 [Arabidopsis thaliana] gi|332642946|gb|AEE76467.1| B-box 32 protein [Arabidopsis thaliana] gi|347666435|gb|AEP17830.1| B-box 32 protein [Expression vector pMON81312]

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 138/243 (56%), Gaps = 25/243 (10%)

Query: 1   MKRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISG 60
           M   CELC  EA LHCA+D AFLC  CD + H +NFL ARH R+ +C  CKSLT  F+SG
Sbjct: 1   MVSFCELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSG 60

Query: 61  ERSSSSLVPICPSCCSSTTSTSSDCISSTESSAAEKMG---RERKRVRACSSSVSDISGE 117
                 L+P  P     + S+SS C SS +  ++ ++    R+  R R   + V+     
Sbjct: 61  -----PLLPWPPRTTCCSESSSSSCCSSLDCVSSSELSSTTRDVNRARGRENRVN----- 110

Query: 118 KAAAVADSKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTALPLRACLA 177
            A AVA + A+GIF  WC +LGLN + +N     VVS AS  L L +E       R  LA
Sbjct: 111 -AKAVAVTVADGIFVNWCGKLGLNRDLTNA----VVSYAS--LALAVETRPRATKRVFLA 163

Query: 178 ASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRRRPRQVLEEG 237
           A+FWFG+     K   TW NL+++E ++GV A +I AVE K+AR M  + RR R   EEG
Sbjct: 164 AAFWFGV-----KNTTTWQNLKKVEDVTGVSAGMIRAVESKLARAMTQQLRRWRVDSEEG 218

Query: 238 WAE 240
           WAE
Sbjct: 219 WAE 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835080|ref|XP_002885422.1| hypothetical protein ARALYDRAFT_342260 [Arabidopsis lyrata subsp. lyrata] gi|297331262|gb|EFH61681.1| hypothetical protein ARALYDRAFT_342260 [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 130/249 (52%), Gaps = 42/249 (16%)

Query: 5   CELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERSS 64
           CELC  EA +HCA+D AFLC  CD + H +NFL ARH R+ +C  CKSLT  F+SG    
Sbjct: 198 CELCGAEADIHCAADSAFLCRSCDAKFHGSNFLFARHFRRVICPNCKSLTQDFVSG---- 253

Query: 65  SSLVPICPSCCSSTTSTSSDC-------------ISSTESSAAEKMGRERKRVRACSSSV 111
             L+P  P     + S+SS               +SST        GRE +         
Sbjct: 254 -PLLPWPPRTTCCSESSSSSSSCCSSLDCVSSSELSSTTRGVNRARGRENR--------- 303

Query: 112 SDISGEKAAAVADSKAEGIFAIWCRRLGLNGNNSNCNSVVVVSLASRALGLFLERTTALP 171
                 KA AVA + A+GIF  WC +LGL  + +N     VVS AS AL +  ER     
Sbjct: 304 -----VKAKAVAVTVADGIFVNWCGKLGLKRDLTN----AVVSYASLALSV-AERKPRAT 353

Query: 172 LRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAKLIVAVEGKIARVMAVRRRRPR 231
            R  LAA+FWFG+     K      +L+++E ++GV A +I AVE K+AR M ++ RR R
Sbjct: 354 KRVILAAAFWFGV-----KNTMKLQSLKKVEDVTGVSAGMIRAVESKMARAMTLQLRRWR 408

Query: 232 QVLEEGWAE 240
              EEGWAE
Sbjct: 409 VDSEEGWAE 417

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302825145|ref|XP_002994205.1| hypothetical protein SELMODRAFT_449329 [Selaginella moellendorffii] gi|300137916|gb|EFJ04710.1| hypothetical protein SELMODRAFT_449329 [Selaginella moellendorffii]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 114/249 (45%), Gaps = 33/249 (13%)

Query: 3   RACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGER 62
           R CELC   AA++C +DEA+LC+ CD +VH ANF+VARH+R  LC +C S T        
Sbjct: 5   RDCELCQVRAAVYCCADEAYLCWKCDSKVHGANFIVARHLRSILCGRCHSPTAVLAESSP 64

Query: 63  SSSSLVPICPSCC--SSTTSTSSDCISSTE--------------SSAAEKMGRE---RKR 103
                 P+CP+C   +S    S D I S                SSAA K  R    R R
Sbjct: 65  PGPCSSPLCPTCACPASLGDISEDSIHSQHSSTMDHDPAAEEEVSSAAPKRARSSELRTR 124

Query: 104 VRACS-SSVSDISGEKAAAVADS------------KAEGIFAIWCRRLGLNGNNSNCNSV 150
            R+ S  SV  +S ++  A  D+            + E +   W   LGL  ++    S+
Sbjct: 125 SRSPSPDSVIPVSRKRKNAAIDAAVIPTQQLVTLGRLECVLRNWEGALGLERSDHRV-SL 183

Query: 151 VVVSLASRALGLFLERTTALPLRACLAASFWFGLRMCGDKTVATWPNLRRLEAISGVPAK 210
            +  L   A+ + + R   L  RA LA   W  L++  D+   + P +      +G+ A 
Sbjct: 184 AMQLLRRIAVSIKVNRLPKLDARAALAVCLWISLKLERDRLSRSIPRVDLFGRCTGIAAD 243

Query: 211 LIVAVEGKI 219
           +++ VE ++
Sbjct: 244 VLLTVEARL 252

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2092940	225	BBX32 "B-box domain protein 32	0.687	0.742	0.314	2.2e-18
TAIR|locus:2131709	223	BBX28 "B-box domain protein 28	0.222	0.242	0.574	1e-13
TAIR|locus:2147274	215	BBX29 "B-box domain protein 29	0.242	0.274	0.559	1.6e-13
TAIR|locus:2095562	121	BBX31 "B-box domain protein 31	0.267	0.537	0.461	9.1e-13
TAIR|locus:1009023318	117	BBX30 "B-box domain protein 30	0.238	0.495	0.465	1.2e-12
TAIR|locus:2199262	356	BBX27 "B-box domain protein 27	0.213	0.146	0.471	3.2e-09
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.230	0.161	0.421	5.6e-08
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.201	0.166	0.5	1.1e-07
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.222	0.333	0.490	1.1e-07
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.251	0.183	0.444	1.5e-07

TAIR|locus:2092940 BBX32 "B-box domain protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 57/181 (31%), Positives = 81/181 (44%)

Query:     5 CELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERSS 64
             CELC  EA LHCA+D AFLC  CD + H +NFL ARH R+ +C  CKSLT  F+SG    
Sbjct:     5 CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGP--- 61

Query:    65 SSLVPIXXXXXXXXXXXXXXXXXXXXXXAAEKMGRERKRVRACSSSVSDISGEKAAAVAD 124
               L+P                       ++ ++    + V       + ++   A AVA 
Sbjct:    62 --LLPWPPRTTCCSESSSSSCCSSLDCVSSSELSSTTRDVNRARGRENRVN---AKAVAV 116

Query:   125 SKAEGIFAIWXXXXXXXXXXXXXXXXXXXXLASRALGLFLERTTALPLRACLAASFWFGL 184
             + A+GIF  W                    ++  +L L +E       R  LAA+FWFG+
Sbjct:   117 TVADGIFVNWCGKLGLNRDLTNAV------VSYASLALAVETRPRATKRVFLAAAFWFGV 170

Query:   185 R 185
             +
Sbjct:   171 K 171

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009909 "regulation of flower development" evidence=IMP

TAIR|locus:2131709 BBX28 "B-box domain protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 31/54 (57%), Positives = 41/54 (75%)

Query:     1 MKRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLT 54
             M + C+LC+  A ++C SD+A LC+DCD +VH ANFLVA+H R  LCS C+SLT
Sbjct:     1 MGKKCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLT 54

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2147274 BBX29 "B-box domain protein 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 33/59 (55%), Positives = 42/59 (71%)

Query:     2 KRACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISG 60
             K+ CELC   A ++C SD+A LC+DCD +VH ANFLVA+H+R  LCS C+S T    SG
Sbjct:     3 KKKCELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASG 61

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009409 "response to cold" evidence=IEP

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2095562 BBX31 "B-box domain protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query:     5 CELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGERSS 64
             CELC  +A++ C +D AFLC  CD  VH ANFL  RHVR+ LC+ C+ LT + + G+   
Sbjct:    31 CELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLTRRCLVGDHDF 90

Query:    65 SSLVP 69
               ++P
Sbjct:    91 HVVLP 95

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010224 "response to UV-B" evidence=IEP;RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

TAIR|locus:1009023318 BBX30 "B-box domain protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query:     4 ACELCSQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGE 61
             +CELC + A ++C +D AFLC  CD  VH ANFL  RH+R+ +C+ C+ LT + + G+
Sbjct:    31 SCELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGD 88

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2199262 BBX27 "B-box domain protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:     1 MKRACELC-SQEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKS 52
             M+R CE C +  A ++C +D A LC  CD +VH AN L  RH+R  LC  CK+
Sbjct:    10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKN 62

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:     3 RACELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFI 58
             RAC+ C   A  ++C +D A+LC  CD RVH AN + +RH R  +C  C+S    F+
Sbjct:    14 RACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFL 70

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/50 (50%), Positives = 31/50 (62%)

Query:     3 RACELCSQEAA-LHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCK 51
             R C+ C   AA L C +D AFLC DCD ++H AN L +RH R  LC  C+
Sbjct:     6 RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCE 55

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/55 (49%), Positives = 32/55 (58%)

Query:     1 MKRACELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQCKSLT 54
             MK  CE+C + EA + C SDEA LC  CD +VH+AN L  RH R  L     S T
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASAT 55

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query:     3 RACELCSQEAAL-HCASDEAFLCFDCDDRVHKANFLVARHVRQTLCSQC-KSLTGKFISG 60
             R C+ C    AL +C +D A LC  CD +VH AN L A+H R  LC  C +S +  F   
Sbjct:    11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70

Query:    61 ERS 63
             ERS
Sbjct:    71 ERS 73

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.16
smart00336	42	BBOX B-Box-type zinc finger.	96.43
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.74
KOG4367	699	consensus Predicted Zn-finger protein [Function un	89.53

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.16  E-value=0.00028  Score=45.27  Aligned_cols=37  Identities=41%  Similarity=0.801  Sum_probs=32.4

Q ss_pred             cccccCC-CceEEecCCccccCcccccccccCccccCCcccccc
Q 026095            4 ACELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTL   46 (243)
Q Consensus         4 ~Cd~C~~-pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~RvpL   46 (243)
                      .|+.++. +..+||..|...+|..|+...|.      .|.++|+
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            5888987 99999999999999999988875      5888764

>smart00336 BBOX B-Box-type zinc finger

Probab=96.43  E-value=0.0025  Score=41.30  Aligned_cols=38  Identities=29%  Similarity=0.578  Sum_probs=31.8

Q ss_pred             ccccccC-CCceEEecCCccccCcccccccccCccccCCcccccc
Q 026095            3 RACELCS-QEAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTL   46 (243)
Q Consensus         3 ~~Cd~C~-~pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~RvpL   46 (243)
                      ..|+.++ .+..+||..|...+|..|....|      ..|..++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5789998 59999999999999999998866      35777654

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.74  E-value=0.0049  Score=40.60  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=32.4

Q ss_pred             CccccccCC-CceEEecCCccccCcccccccccCccccCCcccccc
Q 026095            2 KRACELCSQ-EAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTL   46 (243)
Q Consensus         2 ~~~Cd~C~~-pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~RvpL   46 (243)
                      ...|+.|.. ++.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            367999997 599999999999999999999864      776654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=89.53  E-value=0.059  Score=53.83  Aligned_cols=80  Identities=25%  Similarity=0.433  Sum_probs=62.2

Q ss_pred             ccccccCC---CceEEecCCccccCcccccccccCccccCCccccccc-------------cccccCCcceeeccCCCCC
Q 026095            3 RACELCSQ---EAALHCASDEAFLCFDCDDRVHKANFLVARHVRQTLC-------------SQCKSLTGKFISGERSSSS   66 (243)
Q Consensus         3 ~~Cd~C~~---pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~RvpLC-------------~~C~~~pa~~~c~~~~~~d   66 (243)
                      ..|.+|++   .|.|+|.....+.|..|..+.|-+--.+.+|.=+|--             ..|-.|+.....-||.. +
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~-c  241 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQ-C  241 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEe-c
Confidence            46999994   6999999999999999999999988888899876543             45667776655555554 7


Q ss_pred             CcccCCCCCCCCCCCCC
Q 026095           67 LVPICPSCCSSTTSTSS   83 (243)
Q Consensus        67 ~~~LC~~Cd~~~~~~~s   83 (243)
                      .+++|-.|-.++-++.+
T Consensus       242 k~pvc~~clee~khs~h  258 (699)
T KOG4367|consen  242 KMPVCYQCLEEGKHSSH  258 (699)
T ss_pred             CChHHHHHHHhhcccch
Confidence            88888888777666543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 40/278 (14%), Positives = 73/278 (26%), Gaps = 87/278 (31%)

Query: 4   ACELCSQEAALHCASDEAF-LCFDCDDRVHKANFLVARHVRQTLCSQCKSLTGKFISGER 62
           A ++C           + F L        +    ++     Q L  Q   +   + S   
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEM--LQKLLYQ---IDPNWTSRSD 218

Query: 63  SSSSLVPICPSCCSSTTSTSSDCISSTESSAAEKMGR--ERKRVRACSSSVSDISGEKAA 120
            SS+                   I     S   ++ R  + K    C   + +       
Sbjct: 219 HSSN-------------------IKLRIHSIQAELRRLLKSKPYENCLLVLLN------- 252

Query: 121 AVADSKAEGIFAIWCRRLGLNGNNSNCNSVVV-----VSLASR--------ALGLFLE-- 165
            V ++KA   F + C+ L         + +       +SL              L L+  
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 166 --RTTALPLRAC----LAASFWFGLRMCGDKT---VATWPNLRRLEAISGVPAKLIVAVE 216
             R   LP           S      +  +     +ATW N + +        KL   +E
Sbjct: 312 DCRPQDLPREVLTTNPRRLS------IIAESIRDGLATWDNWKHVNC-----DKLTTIIE 360

Query: 217 GKIARVMAVRRRR--------------PRQVLEEGWAE 240
             +  +     R+              P  +L   W +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.58
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	80.97

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.58  E-value=1.4e-05  Score=59.92  Aligned_cols=71  Identities=18%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             ccccccC---C-CceEEecCCccccCcccccccccCccccCCcccc-ccc------cccccCCc---ceeeccCCCCCCc
Q 026095            3 RACELCS---Q-EAALHCASDEAFLCFDCDDRVHKANFLVARHVRQ-TLC------SQCKSLTG---KFISGERSSSSLV   68 (243)
Q Consensus         3 ~~Cd~C~---~-pA~vyC~aD~A~LC~~CDa~vH~AN~La~rH~Rv-pLC------~~C~~~pa---~~~c~~~~~~d~~   68 (243)
                      ..|++|.   . +|+.+|..+...||..|...+|..++.+.+|..+ |+-      ..|+.|+.   .+||..    |..
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~----~~~   79 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVT----DDQ   79 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETT----TTE
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCC----CCC
Confidence            5799997   2 7999999999999999999999988888899876 332      36888863   445654    999


Q ss_pred             ccCCCCCCC
Q 026095           69 PICPSCCSS   77 (243)
Q Consensus        69 ~LC~~Cd~~   77 (243)
                      ++|..|...
T Consensus        80 ~iC~~C~~~   88 (101)
T 2jun_A           80 LICALCKLV   88 (101)
T ss_dssp             EECHHHHHH
T ss_pred             ccchhcCCC
Confidence            999999863

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=80.97  E-value=0.81  Score=28.86  Aligned_cols=31  Identities=26%  Similarity=0.565  Sum_probs=24.1

Q ss_pred             cccccCCCceEEecCCccccCccccc-ccccC
Q 026095            4 ACELCSQEAALHCASDEAFLCFDCDD-RVHKA   34 (243)
Q Consensus         4 ~Cd~C~~pA~vyC~aD~A~LC~~CDa-~vH~A   34 (243)
                      .|+.-+.+-.+||..|...+|..|.. .-|..
T Consensus         5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~   36 (42)
T 1fre_A            5 KCSEHDERLKLYCKDDGTLSCVICRDSLKHAS   36 (42)
T ss_dssp             CCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred             cchhhCCeeeEEeCCCCeEEeccCCCCCCCCC
Confidence            45555557789999999999999986 55543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00