Citrus Sinensis ID: 026103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MDILFGQVSDPGLTDNKPESSTQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWSHSI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccEEEEcccccEEEEEEcccccccEEccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEcccccHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
mdilfgqvsdpgltdnkpesstqsdasstapprrgahsdEEVVLLATsrpkkragrrvfketrhpifrgvrmrnnnkwvcelrepnkqtriwlgtypspemaARAHDVAALALRGKSACLNfadsvwrlpvpastdaKDIRKAAAEAAEafrprddeleesnihHVKLEEVQKTMQentllpenvlymdehavfdmPGLLADMAeglllspppllfgdddvmkwdyhnngesdgcvslwshsi
Flexible Loop (DISEMBL)
mdilfgqvsdpgltdnkpesstqsdasstapprrgahsdeevvllatsrpkkragrrvfketrhpifrgvrmrnnnkwvcelrepnkqtrIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEafrprddeleesNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNgesdgcvslwshsi
Low Complexity Region (SEG)
MDILFGQVSDPGLTDNKPESSTQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMaarahdvaalalrGKSACLNFADSVWRLPVPASTDAKDIRKaaaeaaeaFRPRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGlllspppllFGDDDVMKWDYHNNGESDGCVSLWSHSI
Disordered region (IsUnstruct)
*********************************************************VFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVP*********************************************NTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESDGCVSLW****
Disordered Region (DISOPRED)
******************************************************************FRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRL**********IRKAAAEA****************************************MDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWSHSI
Disordered Region (DISEMBL)
MDILFGQVSDPGL**************************EEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWSHSI
Disordered Region (DISPRO)
*******************************************L*******KR*GRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFR********************************VLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWSHSI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDILFGQVSDPGLTDNKPESSTQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWSHSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9SYS6	216	Dehydration-responsive el	yes	no	0.753	0.847	0.569	3e-55
P93835	213	Dehydration-responsive el	no	no	0.761	0.868	0.595	3e-55
Q9FJ93	224	Dehydration-responsive el	no	no	0.765	0.830	0.545	3e-52
Q9M0L0	216	Dehydration-responsive el	no	no	0.740	0.833	0.584	4e-52
Q9LN86	209	Dehydration-responsive el	no	no	0.473	0.550	0.739	5e-46
Q9SGJ6	181	Dehydration-responsive el	no	no	0.456	0.613	0.729	1e-44
Q8S9Z5	219	Dehydration-responsive el	yes	no	0.666	0.739	0.508	1e-39
A2WZI4	219	Dehydration-responsive el	N/A	no	0.666	0.739	0.508	1e-39
Q8H273	219	Dehydration-responsive el	no	no	0.839	0.931	0.453	2e-39
A2XWL6	219	Dehydration-responsive el	N/A	no	0.839	0.931	0.453	2e-39

>sp|Q9SYS6|DRE1C_ARATH Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 144/202 (71%), Gaps = 19/202 (9%)

Query: 45  LATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAAR 104
           LATS PKK AGR+ F+ETRHPI+RGVR RN+ KWVCELREPNK+TRIWLGT+ + EMAAR
Sbjct: 29  LATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAAR 88

Query: 105 AHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDEL--EESN 162
           AHDVAA+ALRG+SACLNFADS WRL +P ST AK+I+KAAAEAA  F+   DE+    ++
Sbjct: 89  AHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQ---DEMCHMTTD 145

Query: 163 IHHVKLEEVQKTMQENTLLPE---NVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDD 219
            H + +EE   T+ E    PE   +  YMDE A+  M  LL +MAEG+LL  P +     
Sbjct: 146 AHGLDMEE---TLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPSV----- 197

Query: 220 DVMKWDYHNNGESDGCVSLWSH 241
              +W+Y+ + E D  VSLWS+
Sbjct: 198 ---QWNYNFDVEGDDDVSLWSY 216

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.
Arabidopsis thaliana (taxid: 3702)

>sp|P93835|DRE1B_ARATH Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 119/200 (59%), Positives = 145/200 (72%), Gaps = 15/200 (7%)

Query: 45  LATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAAR 104
           LATS PKK AGR+ F+ETRHPI+RGVR RN+ KWV E+REPNK+TRIWLGT+ + EMAAR
Sbjct: 26  LATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAAR 85

Query: 105 AHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIH 164
           AHDVAALALRG+SACLNFADS WRL +P ST AKDI+KAAAEAA AF+    +   +N H
Sbjct: 86  AHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTTN-H 144

Query: 165 HVKLEEVQKTMQENTLLP---ENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDV 221
            + +EE   TM E    P   E   YMDE  +F MP LL +MAEG+LL PP +       
Sbjct: 145 GLDMEE---TMVEAIYTPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSV------- 194

Query: 222 MKWDYHNNGESDGCVSLWSH 241
            +W+++ +GE DG VSLWS+
Sbjct: 195 -QWNHNYDGEGDGDVSLWSY 213

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ93|DRE1D_ARATH Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/200 (54%), Positives = 138/200 (69%), Gaps = 14/200 (7%)

Query: 45  LATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAAR 104
           LA+S PKKRAGR+ F+ETRHPI+RGVR RN+ KWVCE+REPNK++RIWLGT+P+ EMAAR
Sbjct: 32  LASSCPKKRAGRKKFRETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAAR 91

Query: 105 AHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIH 164
           AHDVAALALRG+SACLNFADS WRL +P +T  K+I+KAA+EAA AF+  +   E S   
Sbjct: 92  AHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAAMAFQ-NETTTEGSKTA 150

Query: 165 HVKLEEVQKTMQENTLLPE----NVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDD 220
               E   + ++E     E     V YMD+ A+  MP    +MAEG+LL PP +      
Sbjct: 151 AEAEEAAGEGVREGERRAEEQNGGVFYMDDEALLGMPNFFENMAEGMLLPPPEV------ 204

Query: 221 VMKWDYHNNGESDGCVSLWS 240
              W+ HN+ +  G VSLWS
Sbjct: 205 --GWN-HNDFDGVGDVSLWS 221

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0L0|DRE1A_ARATH Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2

 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 135/190 (71%), Gaps = 10/190 (5%)

Query: 45  LATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAAR 104
           LA+S PKK AGR+ F+ETRHPI+RGVR RN+ KWVCE+REPNK+TRIWLGT+ + EMAAR
Sbjct: 29  LASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAAR 88

Query: 105 AHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIH 164
           AHDVAALALRG+SACLNFADS WRL +P ST AKDI+KAAAEAA AF  +D+  + +  H
Sbjct: 89  AHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAF--QDEMCDATTDH 146

Query: 165 HVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFG------- 217
              +EE            EN  YM + A+F+MP LLA+MAEG+LL  P + +        
Sbjct: 147 GFDMEETLVEAIYTAEQSENAFYMHDEAMFEMPSLLANMAEGMLLPLPSVQWNHNHEVDG 206

Query: 218 -DDDVMKWDY 226
            DDDV  W Y
Sbjct: 207 DDDDVSLWSY 216

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN86|DRE1F_ARATH Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1

 Score =  184 bits (467), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 96/115 (83%)

Query: 43  VLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMA 102
           ++LA  RPKKRAGRRVFKETRHP++RG+R RN +KWVCE+REP  Q RIWLGTYP+ +MA
Sbjct: 6   IILAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMA 65

Query: 103 ARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDE 157
           ARAHDVA LALRG+SACLNFADS WRLPVP S D   IR+ AAEAAE FRP D E
Sbjct: 66  ARAHDVAVLALRGRSACLNFADSAWRLPVPESNDPDVIRRVAAEAAEMFRPVDLE 120

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGJ6|DRE1E_ARATH Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana GN=DREB1E PE=2 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 95/111 (85%)

Query: 43  VLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMA 102
           + +A  +PKKRAGRR+FKETRHPI+RGVR R+ +KWVCE+REP  Q R+WLGTYP+ +MA
Sbjct: 6   ITVAEMKPKKRAGRRIFKETRHPIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMA 65

Query: 103 ARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRP 153
           ARAHDVA LALRG+SACLNF+DS WRLPVPASTD   IR+ AAEAAE FRP
Sbjct: 66  ARAHDVAVLALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAEAAEMFRP 116

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S9Z5|DRE1F_ORYSJ Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 110/167 (65%), Gaps = 5/167 (2%)

Query: 50  PKKRAGRRVFKETRHPIFRGVRMR-NNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDV 108
           PK+RAGR+ F+ETRHP++RGVR R   ++WVCE+REP  Q RIWLGTYP+PEMAARAHDV
Sbjct: 30  PKRRAGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDV 89

Query: 109 AALALRG-KSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVK 167
           AA+ALRG + A LNF DS   LP   +   +DIR AAA+AAE +R          +    
Sbjct: 90  AAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAELYR---RPPPPLALPEDP 146

Query: 168 LEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPL 214
            E         T      +++DE A+FDMPGL+ DMA G++L+PP +
Sbjct: 147 QEGTSGGGATATSGRPAAVFVDEDAIFDMPGLIDDMARGMMLTPPAI 193

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WZI4|DRE1F_ORYSI Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 110/167 (65%), Gaps = 5/167 (2%)

Query: 50  PKKRAGRRVFKETRHPIFRGVRMR-NNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDV 108
           PK+RAGR+ F+ETRHP++RGVR R   ++WVCE+REP  Q RIWLGTYP+PEMAARAHDV
Sbjct: 30  PKRRAGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDV 89

Query: 109 AALALRG-KSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVK 167
           AA+ALRG + A LNF DS   LP   +   +DIR AAA+AAE +R          +    
Sbjct: 90  AAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAELYR---RPPPPLALPEDP 146

Query: 168 LEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPL 214
            E         T      +++DE A+FDMPGL+ DMA G++L+PP +
Sbjct: 147 QEGTSGGGATATSGRPAAVFVDEDAIFDMPGLIDDMARGMMLTPPAI 193

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H273|DRE1E_ORYSJ Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. japonica GN=DREB1E PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 131/214 (61%), Gaps = 10/214 (4%)

Query: 29  TAPPRRGAHSDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQ 88
           T  P  G   ++  + ++++ PK+RAGR  FKETRHP+++GVR RN  +WVCE+REP+ +
Sbjct: 15  TPSPVGGDGDEDSYMTVSSAPPKRRAGRTKFKETRHPVYKGVRSRNPGRWVCEVREPHGK 74

Query: 89  TRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPA-STDAKDIRKAAAEA 147
            RIWLGT+ + EMAARAHDVAA+ALRG++ACLNFADS  RL VP      ++IR+AA EA
Sbjct: 75  QRIWLGTFETAEMAARAHDVAAMALRGRAACLNFADSPRRLRVPPLGAGHEEIRRAAVEA 134

Query: 148 AEAFRPRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGL 207
           AE FRP   +   +          Q T     L  +   Y  +   F+M G L DMA+G+
Sbjct: 135 AELFRPAPGQ-HNAAAEAAAAVAAQATAASAELFADFPCYPMDGLEFEMQGYL-DMAQGM 192

Query: 208 LLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWSH 241
           L+ PPPL  G     + DY      D  V+LWS+
Sbjct: 193 LIEPPPLA-GQSTWAEEDY------DCEVNLWSY 219

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XWL6|DRE1E_ORYSI Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. indica GN=DREB1E PE=3 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 131/214 (61%), Gaps = 10/214 (4%)

Query: 29  TAPPRRGAHSDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQ 88
           T  P  G   ++  + ++++ PK+RAGR  FKETRHP+++GVR RN  +WVCE+REP+ +
Sbjct: 15  TPSPVGGDGDEDSYMTVSSAPPKRRAGRTKFKETRHPVYKGVRSRNPGRWVCEVREPHGK 74

Query: 89  TRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPA-STDAKDIRKAAAEA 147
            RIWLGT+ + EMAARAHDVAA+ALRG++ACLNFADS  RL VP      ++IR+AA EA
Sbjct: 75  QRIWLGTFETAEMAARAHDVAAMALRGRAACLNFADSPRRLRVPPLGAGHEEIRRAAVEA 134

Query: 148 AEAFRPRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGL 207
           AE FRP   +   +          Q T     L  +   Y  +   F+M G L DMA+G+
Sbjct: 135 AELFRPAPGQ-HNAAAEAAAAVAAQATAASAELFADFPCYPMDGLEFEMQGYL-DMAQGM 192

Query: 208 LLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWSH 241
           L+ PPPL  G     + DY      D  V+LWS+
Sbjct: 193 LIEPPPLA-GQSTWAEEDY------DCEVNLWSY 219

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
111218108	243	CBF/DREB-like transcription factor 1 [Ci	1.0	1.0	0.987	1e-138
255537273	230	Dehydration-responsive element-binding p	0.934	0.986	0.616	1e-65
224053977	231	AP2/ERF domain-containing transcription	0.798	0.839	0.669	1e-64
333696862	227	DREB transcription factor [Corylus heter	0.905	0.969	0.58	2e-64
344190182	227	AP2 domain class transcription factor [C	0.905	0.969	0.576	4e-64
85726210	231	CBF1 [Populus tomentosa]	0.798	0.839	0.655	4e-64
145322756	209	putative C-repeat binding protein 4 [Pop	0.790	0.918	0.645	1e-63
224058611	213	AP2/ERF domain-containing transcription	0.806	0.920	0.641	1e-63
291327435	208	CBF2 protein [Populus balsamifera]	0.720	0.841	0.713	4e-63
291327453	211	CBF2 protein [Populus trichocarpa]	0.720	0.829	0.713	5e-63

>gi|111218108|gb|ABH08746.1| CBF/DREB-like transcription factor 1 [Citrus trifoliata]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/243 (98%), Positives = 241/243 (99%)

Query: 1   MDILFGQVSDPGLTDNKPESSTQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGRRVFK 60
           MDILFGQVSDPGLTDNKPESSTQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGRRVFK
Sbjct: 1   MDILFGQVSDPGLTDNKPESSTQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGRRVFK 60

Query: 61  ETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACL 120
           ETRHPIFRGVR RNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACL
Sbjct: 61  ETRHPIFRGVRRRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACL 120

Query: 121 NFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQENTL 180
           NFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQENTL
Sbjct: 121 NFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQENTL 180

Query: 181 LPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWS 240
           LPENVLYMDE AVFDMPGLLADMAEGLLLSPPPL+FGDDDVMKWDYHNNGESDGCVSLWS
Sbjct: 181 LPENVLYMDEQAVFDMPGLLADMAEGLLLSPPPLIFGDDDVMKWDYHNNGESDGCVSLWS 240

Query: 241 HSI 243
           HSI
Sbjct: 241 HSI 243

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537273|ref|XP_002509703.1| Dehydration-responsive element-binding protein 1F, putative [Ricinus communis] gi|223549602|gb|EEF51090.1| Dehydration-responsive element-binding protein 1F, putative [Ricinus communis]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/237 (61%), Positives = 171/237 (72%), Gaps = 10/237 (4%)

Query: 7   QVSDPGLTDNKPESSTQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGRRVFKETRHPI 66
           Q SDP   D K ES + SD++++   RR  HSDEEV LLATS PKKRAGRRVFKETRHP+
Sbjct: 4   QFSDPYPFD-KHESFSPSDSTTS---RRAVHSDEEV-LLATSYPKKRAGRRVFKETRHPV 58

Query: 67  FRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSV 126
           FRGVR RNN+KWVCELREPNK++RIWLGTYP+PEMAARAHDVAALALRGKSACLNFADS 
Sbjct: 59  FRGVRNRNNDKWVCELREPNKKSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSA 118

Query: 127 WRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQENTLLPENVL 186
           WRLPVP STD  DIR+AA EAAE FRP++   + +      +E+       +    E V 
Sbjct: 119 WRLPVPVSTDPNDIRRAAHEAAELFRPQEFGGQVTRKFGSVVEQDAGEASSSDSKQE-VS 177

Query: 187 YMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESDGCVSLWSHSI 243
           Y+DE    DMPGLLA MAE  LLSPP   +  +D M+   H   E+D  VSLWS+S+
Sbjct: 178 YIDEEDFLDMPGLLARMAERPLLSPP--HYARNDGMELGDHL--EADIDVSLWSYSV 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053977|ref|XP_002298067.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|134038594|gb|ABO48365.1| C-repeat binding facor 3 [Populus trichocarpa] gi|222845325|gb|EEE82872.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/206 (66%), Positives = 153/206 (74%), Gaps = 12/206 (5%)

Query: 38  SDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYP 97
           S  E VLLATSRPKKRAGRR+FKETRHPIFRGVR RN +KWVCELREPNK++RIWLGTYP
Sbjct: 34  SSNEKVLLATSRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYP 93

Query: 98  SPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRD-- 155
           +PEMAARAHDVAALA RGKSACLNFADS WRLPVP S +AKDIR+AA+EAAE FR  D  
Sbjct: 94  TPEMAARAHDVAALAFRGKSACLNFADSAWRLPVPISNEAKDIRRAASEAAELFRTSDLG 153

Query: 156 DELEESNIHHVKLEEVQKTMQENTLLP-ENVLYMDEHAVFDMPGLLADMAEGLLLSPPPL 214
            ++ E      + E    T  +   LP ENV Y+DE A F+MPGLLA MAEGLLLSPP  
Sbjct: 154 GQVMEDFRREDRGEVCSSTNDDIRDLPSENVGYIDEEAEFNMPGLLASMAEGLLLSPPHY 213

Query: 215 LFGDDDVMKWDYHNNGESDGCVSLWS 240
             GD     W   N+GE D   SLWS
Sbjct: 214 T-GD-----W---NDGEIDADWSLWS 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333696862|gb|AEF79999.1| DREB transcription factor [Corylus heterophylla]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/250 (58%), Positives = 176/250 (70%), Gaps = 30/250 (12%)

Query: 1   MDILFGQVSDP---GLTDNKPES-STQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGR 56
           MDI F + S+P   G     PE+ S+ SDA        G HSDEEV+L A+S+PK+RAGR
Sbjct: 1   MDI-FARYSEPHPFGSPAENPETASSLSDA--------GHHSDEEVIL-ASSKPKRRAGR 50

Query: 57  RVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGK 116
           + FKETRHP++RGVR RNNNKWV E+R+P ++TRIWLGTYPS EMAARAHDVAALALRG 
Sbjct: 51  KKFKETRHPVYRGVRRRNNNKWVSEMRKPKEKTRIWLGTYPSAEMAARAHDVAALALRGT 110

Query: 117 SACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQ 176
           SACLNFADS W L +PASTDA +IR+AAA AAE FRP DD+  E +      E V+ + +
Sbjct: 111 SACLNFADSAWSLRMPASTDAGEIRRAAAVAAEGFRPSDDQFVEEDCG----ESVKGSCE 166

Query: 177 ENTL---LPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESD 233
           E  L     E+V+Y+DE A++DMPGLL  MA+GLLLSPPP  F D D    D  +N +  
Sbjct: 167 ELVLDHHHQESVMYLDEEALYDMPGLLVKMAQGLLLSPPP--FVDQD----DMESNADE- 219

Query: 234 GCVSLWSHSI 243
             VSLWS SI
Sbjct: 220 --VSLWSFSI 227

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344190182|gb|AEM97873.1| AP2 domain class transcription factor [Corylus mandshurica] gi|344190184|gb|AEM97874.1| CBF domain class transcription factor [Corylus yunnanensis]

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 144/250 (57%), Positives = 177/250 (70%), Gaps = 30/250 (12%)

Query: 1   MDILFGQVSDP---GLTDNKPES-STQSDASSTAPPRRGAHSDEEVVLLATSRPKKRAGR 56
           MDI F + S+P   G     PE+ S+ SDA        G H++EEV+L A+S+PK+RAGR
Sbjct: 1   MDI-FARYSEPHPFGSPAENPETASSLSDA--------GHHANEEVIL-ASSKPKRRAGR 50

Query: 57  RVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGK 116
           + FKETRHP++RGVR RNNNKWV E+R+PN++TRIWLGTYPS EMAARAHD+AALALRG 
Sbjct: 51  KKFKETRHPVYRGVRRRNNNKWVSEMRKPNEKTRIWLGTYPSAEMAARAHDLAALALRGT 110

Query: 117 SACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRDDELEESNIHHVKLEEVQKTMQ 176
           SACLNFADS W L VPASTDA +IR+AAA AAE FRP DD+  E +      E V+ + +
Sbjct: 111 SACLNFADSAWSLRVPASTDAGEIRRAAAVAAEGFRPSDDQFVEEDCG----ESVKGSCE 166

Query: 177 ENTL---LPENVLYMDEHAVFDMPGLLADMAEGLLLSPPPLLFGDDDVMKWDYHNNGESD 233
           E  L     E+V+Y+DE A++DMPGLL  MA+GLLLSPPP  F D D    D  +N +  
Sbjct: 167 ELVLDHHHQESVMYLDEEALYDMPGLLVKMAQGLLLSPPP--FVDQD----DMESNADE- 219

Query: 234 GCVSLWSHSI 243
             VSLWS SI
Sbjct: 220 --VSLWSFSI 227

Source: Corylus mandshurica

Species: Corylus mandshurica

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|85726210|gb|ABC79626.1| CBF1 [Populus tomentosa]

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/206 (65%), Positives = 153/206 (74%), Gaps = 12/206 (5%)

Query: 38  SDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYP 97
           S  E VLLA SRPKKRAGRR+FKETRHPIFRGVR RN +KWVCELREPNK++RIWLGTYP
Sbjct: 34  SSNEKVLLAASRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYP 93

Query: 98  SPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRD-- 155
           +PEMAARAHDVAALA RGKSACLNFADS WRLP P S +AKDIR+AA+EAAE FR  D  
Sbjct: 94  TPEMAARAHDVAALAFRGKSACLNFADSAWRLPAPISNEAKDIRRAASEAAELFRTSDLG 153

Query: 156 DELEESNIHHVKLEEVQKTMQENTLLP-ENVLYMDEHAVFDMPGLLADMAEGLLLSPPPL 214
            ++ E +    + E    T  +   LP ENV Y+DE A F++PGLLA+MAEGLLLSPP  
Sbjct: 154 GQVMEDHTTENRGEVCSSTNDDIRDLPSENVSYIDEEAEFNLPGLLANMAEGLLLSPPHY 213

Query: 215 LFGDDDVMKWDYHNNGESDGCVSLWS 240
             GD     W   N+GE D   SLWS
Sbjct: 214 T-GD-----W---NDGEIDADWSLWS 230

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145322756|gb|ABP64695.1| putative C-repeat binding protein 4 [Populus trichocarpa]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 155/209 (74%), Gaps = 17/209 (8%)

Query: 33  RRGAHSDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIW 92
           RR  HSDEEV LLATS PKKRAGRR+F+ETRHP+FRGVR RN NKWVCE+REPNK++RIW
Sbjct: 18  RRVVHSDEEV-LLATSFPKKRAGRRIFRETRHPVFRGVRKRNGNKWVCEMREPNKKSRIW 76

Query: 93  LGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFR 152
           LGTYP+PEMAARAHDVAALALRGKSACLNFADS WRLPVP S D+KDI +AA EAAE FR
Sbjct: 77  LGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPVPVSKDSKDITRAANEAAELFR 136

Query: 153 PRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPP 212
           P     +E   + V  +E    M       EN ++ +E AVFDMPGLL DMAEGLLLSPP
Sbjct: 137 P-----QEFGENDVFFKEAVFAMPG-----ENDVFFEE-AVFDMPGLLVDMAEGLLLSPP 185

Query: 213 PLLFGDDDVMKWDYHNNGESDGCVSLWSH 241
              +  +D    D+  NG     +SLWS+
Sbjct: 186 --RYVRNDCNDLDHMENGSD---LSLWSY 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058611|ref|XP_002299565.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222846823|gb|EEE84370.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/209 (64%), Positives = 153/209 (73%), Gaps = 13/209 (6%)

Query: 33  RRGAHSDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIW 92
           RR  HSDEEV LLATS PKKRAGRR+F+ETRHP+FRGVR RN NKWVCE+REPNK++RIW
Sbjct: 18  RRVVHSDEEV-LLATSFPKKRAGRRIFRETRHPVFRGVRKRNGNKWVCEMREPNKKSRIW 76

Query: 93  LGTYPSPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFR 152
           LGTYP+PEMAARAHDVAALALRGKSACLNFADS WRLPVP S D+KDI +AA EAAE FR
Sbjct: 77  LGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPVPVSKDSKDITRAANEAAELFR 136

Query: 153 PRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGLLLSPP 212
           P++     +       E V     EN     +V +  E AVFDMPGLL DMAEGLLLSPP
Sbjct: 137 PQEFGGHPAKQQDSNAEAVFAMPGEN-----DVFF--EEAVFDMPGLLVDMAEGLLLSPP 189

Query: 213 PLLFGDDDVMKWDYHNNGESDGCVSLWSH 241
              +  +D    D+  NG     +SLWS+
Sbjct: 190 --RYVRNDCNDLDHMENGSD---LSLWSY 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|291327435|emb|CBJ94884.1| CBF2 protein [Populus balsamifera]

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/178 (71%), Positives = 141/178 (79%), Gaps = 3/178 (1%)

Query: 38  SDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYP 97
           S  E VLLATSRPKKRAGRR+FKETRHPIFRGVR RN +KWVCELREPNK++RIWLGTYP
Sbjct: 27  SSNEKVLLATSRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYP 86

Query: 98  SPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRD-- 155
           +PEMAARAHDVAALA RGKSACLNFADS WRLPVP S +AKDIR+AA+EAAE FR  D  
Sbjct: 87  TPEMAARAHDVAALAFRGKSACLNFADSAWRLPVPISNEAKDIRRAASEAAELFRTSDLG 146

Query: 156 DELEESNIHHVKLEEVQKTMQENTLLP-ENVLYMDEHAVFDMPGLLADMAEGLLLSPP 212
            ++ E      + E    T  +   LP ENV Y+DE A F+MPGLLA MAEGLLLSPP
Sbjct: 147 GQVMEDFRREDRGEVCSSTNDDIRDLPSENVGYIDEEAEFNMPGLLASMAEGLLLSPP 204

Source: Populus balsamifera

Species: Populus balsamifera

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|291327453|emb|CBJ94893.1| CBF2 protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/178 (71%), Positives = 141/178 (79%), Gaps = 3/178 (1%)

Query: 38  SDEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYP 97
           S  E VLLATSRPKKRAGRR+FKETRHPIFRGVR RN +KWVCELREPNK++RIWLGTYP
Sbjct: 26  SSNEKVLLATSRPKKRAGRRIFKETRHPIFRGVRKRNGDKWVCELREPNKKSRIWLGTYP 85

Query: 98  SPEMAARAHDVAALALRGKSACLNFADSVWRLPVPASTDAKDIRKAAAEAAEAFRPRD-- 155
           +PEMAARAHDVAALA RGKSACLNFADS WRLPVP S +AKDIR+AA+EAAE FR  D  
Sbjct: 86  TPEMAARAHDVAALAFRGKSACLNFADSAWRLPVPISNEAKDIRRAASEAAELFRTSDLG 145

Query: 156 DELEESNIHHVKLEEVQKTMQENTLLP-ENVLYMDEHAVFDMPGLLADMAEGLLLSPP 212
            ++ E      + E    T  +   LP ENV Y+DE A F+MPGLLA MAEGLLLSPP
Sbjct: 146 GQVMEDFRREDRGEVCSSTNDDIRDLPSENVGYIDEEAEFNMPGLLASMAEGLLLSPP 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2131854	213	CBF1 "C-repeat/DRE binding fac	0.761	0.868	0.475	1.1e-41
TAIR|locus:2131849	216	DREB1A "dehydration response e	0.765	0.861	0.452	4.2e-40
TAIR|locus:2131834	216	CBF2 "C-repeat/DRE binding fac	0.753	0.847	0.465	8.7e-40
TAIR|locus:2173113	224	CBF4 "C-repeat-binding factor	0.876	0.950	0.406	1e-36
TAIR|locus:2195052	209	DDF1 "DWARF AND DELAYED FLOWER	0.473	0.550	0.582	7.4e-34
TAIR|locus:2015168	181	ddf2 "DWARF AND DELAYED FLOWER	0.473	0.635	0.547	8.5e-33
TAIR|locus:2044845	184	HRD "HARDY" [Arabidopsis thali	0.580	0.766	0.404	1.3e-22
TAIR|locus:2173063	232	AT5G52020 [Arabidopsis thalian	0.884	0.926	0.323	3.4e-22
TAIR|locus:2195062	192	AT1G12630 [Arabidopsis thalian	0.584	0.739	0.390	1.3e-20
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.646	0.532	0.312	5e-19

TAIR|locus:2131854 CBF1 "C-repeat/DRE binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 95/200 (47%), Positives = 120/200 (60%)

Query:    45 LATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMXXX 104
             LATS PKK AGR+ F+ETRHPI+RGVR RN+ KWV E+REPNK+TRIWLGT+ + EM   
Sbjct:    26 LATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAAR 85

Query:   105 XXXXXXXXXXGKSACLNFADSVWRLPVPASTDAKDIRKXXXXXXXXFRPRDDELEESNIH 164
                       G+SACLNFADS WRL +P ST AKDI+K        F+    +   +N H
Sbjct:    86 AHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTTN-H 144

Query:   165 HVKLEEVQKTMQENTLLPEN---VLYMDEHAVFDMPGLLADMAEGXXXXXXXXXFGDDDV 221
              + +EE   TM E    PE      YMDE  +F MP LL +MAEG               
Sbjct:   145 GLDMEE---TMVEAIYTPEQSEGAFYMDEETMFGMPTLLDNMAEGMLL--------PPPS 193

Query:   222 MKWDYHNNGESDGCVSLWSH 241
             ++W+++ +GE DG VSLWS+
Sbjct:   194 VQWNHNYDGEGDGDVSLWSY 213

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009409 "response to cold" evidence=IEP;IMP;TAS

GO:0009631 "cold acclimation" evidence=IEP;IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

TAIR|locus:2131849 DREB1A "dehydration response element B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 90/199 (45%), Positives = 120/199 (60%)

Query:    45 LATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMXXX 104
             LA+S PKK AGR+ F+ETRHPI+RGVR RN+ KWVCE+REPNK+TRIWLGT+ + EM   
Sbjct:    29 LASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAAR 88

Query:   105 XXXXXXXXXXGKSACLNFADSVWRLPVPASTDAKDIRKXXXXXXXXFRPRDDELEESNIH 164
                       G+SACLNFADS WRL +P ST AKDI+K        F+  D+  + +  H
Sbjct:    89 AHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQ--DEMCDATTDH 146

Query:   165 HVKLEEVQKTMQENTLLPENVLYMDEHAVFDMPGLLADMAEGXXXXXXXXXFGDDDVMKW 224
                +EE            EN  YM + A+F+MP LLA+MAEG               ++W
Sbjct:   147 GFDMEETLVEAIYTAEQSENAFYMHDEAMFEMPSLLANMAEGMLLPLPS--------VQW 198

Query:   225 DYHN--NGESDGCVSLWSH 241
             ++++  +G+ D  VSLWS+
Sbjct:   199 NHNHEVDGDDDD-VSLWSY 216

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IEP;RCA;IDA;IMP;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP;IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2131834 CBF2 "C-repeat/DRE binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 94/202 (46%), Positives = 121/202 (59%)

Query:    45 LATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMXXX 104
             LATS PKK AGR+ F+ETRHPI+RGVR RN+ KWVCELREPNK+TRIWLGT+ + EM   
Sbjct:    29 LATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAAR 88

Query:   105 XXXXXXXXXXGKSACLNFADSVWRLPVPASTDAKDIRKXXXXXXXXFRPRDDEL--EESN 162
                       G+SACLNFADS WRL +P ST AK+I+K        F+   DE+    ++
Sbjct:    89 AHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQ---DEMCHMTTD 145

Query:   163 IHHVKLEEVQKTMQENTLLPE---NVLYMDEHAVFDMPGLLADMAEGXXXXXXXXXFGDD 219
              H + +EE   T+ E    PE   +  YMDE A+  M  LL +MAEG             
Sbjct:   146 AHGLDMEE---TLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPS------ 196

Query:   220 DVMKWDYHNNGESDGCVSLWSH 241
               ++W+Y+ + E D  VSLWS+
Sbjct:   197 --VQWNYNFDVEGDDDVSLWSY 216

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP;TAS

TAIR|locus:2173113 CBF4 "C-repeat-binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 93/229 (40%), Positives = 122/229 (53%)

Query:    18 PESSTQSDASSTAPPRRGAHSDEEVVL--LATSRPKKRAGRRVFKETRHPIFRGVRMRNN 75
             P  ST  D+  +    R   SD       LA+S PKKRAGR+ F+ETRHPI+RGVR RN+
Sbjct:     3 PFYSTFPDSFLSISDHRSPVSDSSECSPKLASSCPKKRAGRKKFRETRHPIYRGVRQRNS 62

Query:    76 NKWVCELREPNKQTRIWLGTYPSPEMXXXXXXXXXXXXXGKSACLNFADSVWRLPVPAST 135
              KWVCE+REPNK++RIWLGT+P+ EM             G+SACLNFADS WRL +P +T
Sbjct:    63 GKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETT 122

Query:   136 DAKDIRKXXXXXXXXFRPRDDELEESNIHHVKLEEVQKTMQENTLLPEN----VLYMDEH 191
               K+I+K        F+  +   E S       E   + ++E     E     V YMD+ 
Sbjct:   123 CPKEIQKAASEAAMAFQ-NETTTEGSKTAAEAEEAAGEGVREGERRAEEQNGGVFYMDDE 181

Query:   192 AVFDMPGLLADMAEGXXXXXXXXXFGDDDVMKWDYHNNGESDGCVSLWS 240
             A+  MP    +MAEG               + W+ HN+ +  G VSLWS
Sbjct:   182 ALLGMPNFFENMAEGMLL--------PPPEVGWN-HNDFDGVGDVSLWS 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2195052 DDF1 "DWARF AND DELAYED FLOWERING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 67/115 (58%), Positives = 78/115 (67%)

Query:    43 VLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMX 102
             ++LA  RPKKRAGRRVFKETRHP++RG+R RN +KWVCE+REP  Q RIWLGTYP+ +M 
Sbjct:     6 IILAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMA 65

Query:   103 XXXXXXXXXXXXGKSACLNFADSVWRLPVPASTDAKDIRKXXXXXXXXFRPRDDE 157
                         G+SACLNFADS WRLPVP S D   IR+        FRP D E
Sbjct:    66 ARAHDVAVLALRGRSACLNFADSAWRLPVPESNDPDVIRRVAAEAAEMFRPVDLE 120

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010371 "regulation of gibberellin biosynthetic process" evidence=IMP

GO:0016049 "cell growth" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009651 "response to salt stress" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0009408 "response to heat" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050826 "response to freezing" evidence=IMP

TAIR|locus:2015168 ddf2 "DWARF AND DELAYED FLOWERING 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 63/115 (54%), Positives = 79/115 (68%)

Query:    39 DEEVVLLATSRPKKRAGRRVFKETRHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPS 98
             + + + +A  +PKKRAGRR+FKETRHPI+RGVR R+ +KWVCE+REP  Q R+WLGTYP+
Sbjct:     2 ENDDITVAEMKPKKRAGRRIFKETRHPIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPT 61

Query:    99 PEMXXXXXXXXXXXXXGKSACLNFADSVWRLPVPASTDAKDIRKXXXXXXXXFRP 153
              +M             G+SACLNF+DS WRLPVPASTD   IR+        FRP
Sbjct:    62 ADMAARAHDVAVLALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAEAAEMFRP 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010371 "regulation of gibberellin biosynthetic process" evidence=IMP

GO:0016049 "cell growth" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2044845 HRD "HARDY" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 59/146 (40%), Positives = 75/146 (51%)

Query:    63 RHPIFRGVRMR-NNNKWVCELREPNKQTRIWLGTYPSPEMXXXXXXXXXXXXXGKSACLN 121
             RHP++RGVR R N+NKWV E+REP K  RIWLGT+ +PEM             G  A LN
Sbjct:    11 RHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELN 70

Query:   122 FADSVWRLPVPASTDAKDIRKXXXXXXXXF-RPRDDELEESNIHHVKLEEVQKTMQENTL 180
             F +SV  LP P S    DI+         F   RD  +  +N           +  +NT 
Sbjct:    71 FPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMNSSYDNTN 130

Query:   181 LPENVLYMDEHAVFDMPGLLADMAEG 206
             +     +MDE  VFDMP +L +MAEG
Sbjct:   131 MNG---FMDEDLVFDMPNVLMNMAEG 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2173063 AT5G52020 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 73/226 (32%), Positives = 103/226 (45%)

Query:    19 ESSTQSDASSTAPPRRGAHSDEEVVLLATSRPKKRA-GRRVFK--ETRHPIFRGVRMRNN 75
             E++T  + S T P  +   +        + RP   +  RR       +H IFRG+R+RN 
Sbjct:    14 ETTTSREVSITLPTDQSPQTSPGSSSSPSPRPSGGSPARRTATGLSGKHSIFRGIRLRNG 73

Query:    76 NKWVCELREPNKQTRIWLGTYPSPEMXXXXXXXXXXXXXGKSACLNFADSVWRLPVPAST 135
              KWV E+REP K TRIWLGTYP PEM             G  A LNF         P S 
Sbjct:    74 -KWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNFPGLALTYVAPVSN 132

Query:   136 DAKDIRKXXXXXXXXFRPRDDELEESNIHHVKLEEVQKTMQENTLLPENVLYMDEHAVFD 195
              A DIR          +P D   +E  +  V+  + ++ ++E +    ++ +MDE A+ +
Sbjct:   133 SAADIRAAASRAAEMKQP-DQGGDEKVLEPVQPGK-EEELEEVSCNSCSLEFMDEEAMLN 190

Query:   196 MPGLLADMAEGXXXXXXXXXFGDDDVMKWDYHNNGESDGCVSLWSH 241
             MP LL +MAEG               M+ D   N E D   +LWS+
Sbjct:   191 MPTLLTEMAEGMLMSPPRMMI--HPTMEDDSPENHEGD---NLWSY 231

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2195062 AT1G12630 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 59/151 (39%), Positives = 74/151 (49%)

Query:    63 RHPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMXXXXXXXXXXXXXGKSACLNF 122
             + P++RG+R R+  KWV E+REP K TRIWLGTYP  EM             G+ A LNF
Sbjct:    15 KDPVYRGIRCRSG-KWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNF 73

Query:   123 ADSVWRLPVPASTDAKDIRKXXXXXXXXFRPRDDELEESNIHHVKLEEVQKTMQE----N 178
               SV   PVP ST A DIR             + E EE      K    +   +E    N
Sbjct:    74 PGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGE-EEKKAKEKKSSSSKSRARECHVDN 132

Query:   179 TLLPEN---VLYMDEHAVFDMPGLLADMAEG 206
              +   +     +MDE  V +MP LLA+MAEG
Sbjct:   133 DVGSSSWCGTEFMDEEEVLNMPNLLANMAEG 163

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
 Identities = 51/163 (31%), Positives = 75/163 (46%)

Query:     9 SDPGLTDNKPESSTQSDASSTAPPRRGA--HSDEEVVLLATSRPKKRAG---RRVFKETR 63
             S P  T +   SST S+       +R A   S   +V +     +   G   R+     +
Sbjct:    38 SSP-TTSSSSSSSTNSNFIEEDNSKRKASRRSLSSLVSVEDDDDQNGGGGKRRKTNGGDK 96

Query:    64 HPIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMXXXXXXXXXXXXXGKSACLNFA 123
             HP +RGVRMR+  KWV E+REP K++RIWLGTYP+ EM             G +A LNF 
Sbjct:    97 HPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFP 156

Query:   124 DSVWRLPVPASTDAKDIRKXXXXXXXXFRPRDDELEESNIHHV 166
                  LP P +   KDI+         ++   +++  S +  +
Sbjct:   157 KLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEI 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9Z5	DRE1F_ORYSJ	No assigned EC number	0.5089	0.6666	0.7397	yes	no
Q9SYS6	DRE1C_ARATH	No assigned EC number	0.5693	0.7530	0.8472	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-27
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	7e-26
pfam00847	53	pfam00847, AP2, AP2 domain	2e-11

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 99.3 bits (248), Expect = 2e-27
 Identities = 36/61 (59%), Positives = 43/61 (70%)

Query: 65  PIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFAD 124
             +RGVR R   KWV E+R+P+   RIWLGT+ + E AARA+D AAL LRG SA LNF D
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 125 S 125
           S
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 95.4 bits (238), Expect = 7e-26
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 66  IFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNF 122
            +RGVR R   KWV E+R+P+K  R+WLGT+ + E AARA+D AA   RG+SA LNF
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNF 57

Length = 64

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 65  PIFRGVRMR-NNNKWVCELREPN--KQTRIWLGTYPSPEMAARAHDVAALALRG 115
             ++GVR      +WV E+R+P   K+ R  LGT+ + E AARA   A L LRG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
PHA00280	121	putative NHN endonuclease	99.46
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.1

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=7.6e-21  Score=135.84  Aligned_cols=61  Identities=59%  Similarity=0.930  Sum_probs=57.2

Q ss_pred             CceeEeEECCCCeEEEEEeecCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 026103           65 PIFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADS  125 (243)
Q Consensus        65 s~yrGVr~r~~GkW~AeIr~~~~~kri~LGtf~t~EeAA~AyD~Aa~~~~G~~a~~NFp~s  125 (243)
                      |+||||+++++|||+|+|+++..++++|||+|+|+|||++|||.|+++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998777799999999966699999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=4.5e-20  Score=133.37  Aligned_cols=63  Identities=52%  Similarity=0.915  Sum_probs=59.3

Q ss_pred             ceeEeEECCCCeEEEEEeecCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCccCCCCCCCCC
Q 026103           66 IFRGVRMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADSVWR  128 (243)
Q Consensus        66 ~yrGVr~r~~GkW~AeIr~~~~~kri~LGtf~t~EeAA~AyD~Aa~~~~G~~a~~NFp~s~~~  128 (243)
                      .|+||+++++|||+|+|+++.+++++|||+|+|+||||+|||.|+++++|..+.+|||.+.|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            499997787899999999999999999999999999999999999999999999999998764

>PHA00280 putative NHN endonuclease

Probab=99.46  E-value=1.4e-13  Score=111.83  Aligned_cols=72  Identities=14%  Similarity=0.144  Sum_probs=60.2

Q ss_pred             hccCCccccCCCCCCCCCCCCceeEe-EECCCCeEEEEEeecCCCeEEeccCCCCHHHHHHHHHHHHHHhcCCCcc
Q 026103           45 LATSRPKKRAGRRVFKETRHPIFRGV-RMRNNNKWVCELREPNKQTRIWLGTYPSPEMAARAHDVAALALRGKSAC  119 (243)
Q Consensus        45 ~~s~~~k~~~~r~k~~~~~~s~yrGV-r~r~~GkW~AeIr~~~~~kri~LGtf~t~EeAA~AyD~Aa~~~~G~~a~  119 (243)
                      +.-..+.....+++.+.+++|+|+|| ++...|||+|+|+.  +||+++||.|+++|+|+.||+ ++.+|+|.+|+
T Consensus        47 Lr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         47 LRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            33344555566666677899999999 56677999999999  999999999999999999997 77889998875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.10  E-value=2.2e-10  Score=79.82  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=44.9

Q ss_pred             CceeEe-EECCCCeEEEEEeecCC---CeEEeccCCCCHHHHHHHHHHHHHHhcCC
Q 026103           65 PIFRGV-RMRNNNKWVCELREPNK---QTRIWLGTYPSPEMAARAHDVAALALRGK  116 (243)
Q Consensus        65 s~yrGV-r~r~~GkW~AeIr~~~~---~kri~LGtf~t~EeAA~AyD~Aa~~~~G~  116 (243)
                      |+|+|| +.+..++|+|+|+++..   +++++||.|+++++|+++++.+++.++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999 55667999999999432   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-20

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 81.2 bits (201), Expect = 1e-20
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 67  FRGVRMRNNNKWVCELREPNKQ-TRIWLGTYPSPEMAARAHDVAALALRGKSACLNF 122
           +RGVR R   K+  E+R+P K   R+WLGT+ + E AA A+D AA  +RG  A LNF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.11

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=2.2e-25  Score=160.57  Aligned_cols=60  Identities=47%  Similarity=0.738  Sum_probs=56.9

Q ss_pred             ceeEeEECCCCeEEEEEeecCC-CeEEeccCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 026103           66 IFRGVRMRNNNKWVCELREPNK-QTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADS  125 (243)
Q Consensus        66 ~yrGVr~r~~GkW~AeIr~~~~-~kri~LGtf~t~EeAA~AyD~Aa~~~~G~~a~~NFp~s  125 (243)
                      +||||++|++|||+|+|++|.+ +++||||+|+|+||||+|||.|+++++|..+++|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999988889999999999975 79999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.11  E-value=0.33  Score=35.62  Aligned_cols=28  Identities=14%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             CCCCceeEe-EECCCCeEEEEEeecCCCeEE
Q 026103           62 TRHPIFRGV-RMRNNNKWVCELREPNKQTRI   91 (243)
Q Consensus        62 ~~~s~yrGV-r~r~~GkW~AeIr~~~~~kri   91 (243)
                      +..|+|.|| +....+.|+|.-.+  ++++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            567999999 66677999999998  55543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-26

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 95.5 bits (238), Expect = 1e-26
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 67  FRGVRMRNNNKWVCELREPNKQ-TRIWLGTYPSPEMAARAHDVAALALRGKSACLNF 122
           +RGVR R   K+  E+R+P K   R+WLGT+ + E AA A+D AA  +RG  A LNF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=2.4e-25  Score=158.80  Aligned_cols=60  Identities=45%  Similarity=0.725  Sum_probs=55.8

Q ss_pred             ceeEeEECCCCeEEEEEeecC-CCeEEeccCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 026103           66 IFRGVRMRNNNKWVCELREPN-KQTRIWLGTYPSPEMAARAHDVAALALRGKSACLNFADS  125 (243)
Q Consensus        66 ~yrGVr~r~~GkW~AeIr~~~-~~kri~LGtf~t~EeAA~AyD~Aa~~~~G~~a~~NFp~s  125 (243)
                      +|||||+|++|||+|+|++|. ++++||||+|+|+||||+|||+|+++++|..+.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            499998888899999999986 568999999999999999999999999999999999963