Citrus Sinensis ID: 026108

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHccccccHHHHHHccHHHHHHHHHHHHHcccccHHHcccccccccEEEEccccccccccHHHHHHHHHHHHHHcccccccccEEEEccHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccccccccccccccEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEccccccccHHHHHHHHHHHHHHHHccccccHHHHHcccccHcccccHHHHHHHHHHHHHHccccHHHHEcccHHccccEEEcccEEccccHHHHHHHHHHHHHcccccccccccEEEccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MRVSLTRAcrfytspitpkpsffsprailnqpfsssssssshsstpkpktplflkppkysatlsDLKKWHNWAKALASSVRstfadsdngpdssilFRELNWLvedsledpslipqlgfqnnsqSVRLRIGLDELYGLWKQRiekrkpfqylvGCEHWRDLVLSVeegvfiprpetELMVDLVSDVLvrdndglrdgfwvdlgtgsgAIAIGIARVLgskgsiiavDLNPLAAAVAAFNAQRI
Flexible Loop (DISEMBL)
mrvsltracrfytspitpkpsffsPRAILNQPfsssssssshsstpkpktplflkpPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLipqlgfqnnsqsVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI
Low Complexity Region (SEG)
MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFsssssssshsstpkpktplflkppkYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTgsgaiaigiaRVLGSKGSIIavdlnplaaavaafnaQRI
Disordered region (IsUnstruct)
*******ACRFYT***********************************************ATLSDLKKWHNWAKALASS**************SILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF*****
Disordered Region (DISOPRED)
***************************************************LFLKPPKYSATLSDLKKWHNWAKALASSV*************SILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI
Disordered Region (DISEMBL)
MRVSLTRACRFYTSPITPKPSFFSPRAILNQ******************TPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI
Disordered Region (DISPRO)
***SLTRACRFYTSPITPKPSFFSPRAILNQPF**********STPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q7NJS7	286	Release factor glutamine	yes	no	0.551	0.468	0.416	6e-19
Q8DHV7	291	Release factor glutamine	yes	no	0.658	0.549	0.350	1e-18
P74003	299	Release factor glutamine	N/A	no	0.576	0.468	0.388	9e-18
Q9CHX0	270	Release factor glutamine	yes	no	0.390	0.351	0.415	1e-11
A9WBM9	283	Release factor glutamine	yes	no	0.407	0.349	0.441	1e-10
Q9KQ26	286	Release factor glutamine	yes	no	0.374	0.318	0.391	1e-09
B8E004	282	Release factor glutamine	yes	no	0.362	0.312	0.360	2e-09
A6H162	285	Release factor glutamine	yes	no	0.386	0.329	0.362	3e-09
P45873	288	Release factor glutamine	yes	no	0.452	0.381	0.394	5e-09
Q8R619	354	Release factor glutamine	yes	no	0.382	0.262	0.377	5e-09

>sp|Q7NJS7|PRMC_GLOVI Release factor glutamine methyltransferase OS=Gloeobacter violaceus (strain PCC 7421) GN=prmC PE=3 SV=1

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 82/144 (56%), Gaps = 10/144 (6%)

Query: 99  ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHW 158
           E+++L+E       L  +LG     ++ R     ++L  LW++RIE+  P QYL+G  HW
Sbjct: 25  EIDYLIEAVTGLDRLRVRLGGPQALEAHR-----EKLAALWRRRIEEAMPLQYLLGTAHW 79

Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
           RDL L V   V IPRPE+E +VD+  D   R   G R    VDLGTGSGAIA+ +AR L 
Sbjct: 80  RDLQLQVNPAVLIPRPESEALVDVAVD-FCRSCAGARV---VDLGTGSGAIAVAVARAL- 134

Query: 219 SKGSIIAVDLNPLAAAVAAFNAQR 242
              ++ AVD +  A  VA  N +R
Sbjct: 135 PGATVWAVDASEAALVVAGANIER 158

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.
Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 6

>sp|Q8DHV7|PRMC_THEEB Release factor glutamine methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=prmC PE=3 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 17/177 (9%)

Query: 66  LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQS 125
           L++W +WA+ +  +           P+     REL   +        L  ++  +     
Sbjct: 6   LQRWWHWAQGIIPA-----------PERESGLRELKQFLRAFTGLSPL--EITLRRFPPQ 52

Query: 126 VRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD 185
           + L++ L EL   W++R ++R P QYL+G  HW DL L V   V IPRPETE   +L++ 
Sbjct: 53  IHLKLPLTELQERWQRRWQERVPLQYLIGVAHWHDLELVVTPSVLIPRPETE---ELLAV 109

Query: 186 VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           V        + G W+DLGTGSGAIAIG+AR+  +   I AVD +  A  VA  N Q+
Sbjct: 110 VAATVPPWQQQGHWLDLGTGSGAIAIGLARLFPA-ALIHAVDCSSEALEVAQVNIQK 165

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|P74003|PRMC_SYNY3 Release factor glutamine methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prmC PE=3 SV=1

 Score = 90.5 bits (223), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 4/144 (2%)

Query: 99  ELNWLVEDSLEDPSLIPQLGFQNNSQ-SVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEH 157
           ELNWL++   +   L   L  Q+ +   + L+   + +   W++R+E++ P QYL+G   
Sbjct: 31  ELNWLLQGWTDLDRLT--LRLQDFAHREIALQETWENIQRGWRRRVEEKYPVQYLLGQTQ 88

Query: 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL 217
           WRD V+ V + V IPRPETEL++D+V       +       WVDLGTGSGAIA+G+A   
Sbjct: 89  WRDFVIKVTDDVLIPRPETELIIDIVQHEHSALSPSNCADHWVDLGTGSGAIALGLAATF 148

Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQ 241
             +  + AVD +  A A+A  NAQ
Sbjct: 149 -PQALVHAVDCSGSALAIARENAQ 171

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q9CHX0|PRMC_LACLA Release factor glutamine methyltransferase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=prmC PE=3 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 65/101 (64%), Gaps = 6/101 (5%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
           +R+ + +P QY+VG   +RDL L V+E V IPRPETE +V+++  +   + D L+    +
Sbjct: 56  KRLHQNEPPQYIVGWAEFRDLKLKVDERVLIPRPETEELVEMI--LAENEKDSLK---IL 110

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
           D+GTGSGAIAI +A+      S+ A D++  A  +AA NA+
Sbjct: 111 DIGTGSGAIAISLAQA-RENWSVKASDISKEALTLAAENAE 150

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|A9WBM9|PRMC_CHLAA Release factor glutamine methyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=prmC PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
           +R   R+P  YL+G   +  L L V+  V IPRPETEL+V+L      R N         
Sbjct: 61  ERRANREPVAYLIGHREFFGLDLFVDRRVLIPRPETELLVELTLKEAQRFNHT--PLIIA 118

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           D+GTGSGAIAI +A  L     I  VD++P A AVAA N  R
Sbjct: 119 DIGTGSGAIAIALAMHL-PHALIYGVDISPDALAVAAINVTR 159

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q9KQ26|PRMC_VIBCH Release factor glutamine methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=prmC PE=3 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGS 206
           +P  Y++G   +  L L V     IPRP+TE +V+     L  D   L DG  +DLGTG+
Sbjct: 70  EPMAYILGEREFWSLPLKVSPSTLIPRPDTERLVE-----LALDKAALIDGELLDLGTGT 124

Query: 207 GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
           GAIA+ +A  L ++  +  +DL P AA +A  NA R+
Sbjct: 125 GAIALALASELPTR-QVTGIDLRPEAAELARENATRL 160

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|B8E004|PRMC_DICTD Release factor glutamine methyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=prmC PE=3 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 9/97 (9%)

Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF--WVDLGTG 205
           P  Y++  + + D+ L VE GV IPR ETE+++++  D +      L++G+   V++G G
Sbjct: 69  PLNYIIEKKQFYDIELFVERGVLIPRSETEILIEVAKDTI------LKEGYKKIVEIGVG 122

Query: 206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           SG I+I +A+       I A D++P A  VA FNA++
Sbjct: 123 SGNISITLAKEFKD-IKIYACDISPEAIKVARFNAKK 158

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Dictyoglomus turgidum (strain Z-1310 / DSM 6724) (taxid: 515635)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|A6H162|PRMC_FLAPJ Release factor glutamine methyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=prmC PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 8/102 (7%)

Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN---DGLRDGF 198
           +++++KP QY++G   +  L   V E   IPRPETE +V+ +    +++N     L++  
Sbjct: 64  QLKEQKPIQYILGETQFFGLPFYVNENTLIPRPETEELVEWI----IKENLKISSLKNLK 119

Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
            +D+GTGSG IAI +A+ L +  S+ A+D++  A A A  NA
Sbjct: 120 ILDIGTGSGCIAISLAKNLPN-ASVFAIDVSDKALATAQKNA 160

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) (taxid: 402612)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|P45873|PRMC_BACSU Release factor glutamine methyltransferase OS=Bacillus subtilis (strain 168) GN=prmC PE=3 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 9/119 (7%)

Query: 130 IGLDELYGLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDV 186
           IG DELY  +K+ +E  K   P QY++G E +      V + V IPRPETE +V  + + 
Sbjct: 48  IGEDELY-RFKRHVEMHKEGVPVQYIIGKEFFYGREFMVNDDVLIPRPETEEVVFHLLEK 106

Query: 187 L--VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI 243
              V   DG  +   VD+GTGSGAIA+ +A +     S+ AVD++  A  VA+ NA+++
Sbjct: 107 YRSVFSEDGKLE--VVDVGTGSGAIAVTLA-LENQSFSVSAVDISKEALQVASANAEKL 162

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

>sp|Q8R619|PRMC_FUSNN Release factor glutamine methyltransferase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=prmC PE=3 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
           R +KRKP QY++G   +  L   + EGV IPR +TE++V+     L+R+   + +   +D
Sbjct: 117 RAKKRKPLQYILGEWEFYGLPFKMSEGVLIPRADTEILVEQCIQ-LMRE---VEEPNILD 172

Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
           +G+GSGAI+I +A  L S  S+  +D+N  A  +A  N
Sbjct: 173 IGSGSGAISIAVANELKS-SSVTGIDINEKAIKLAIEN 209

Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
255566573	354	n6-DNA-methyltransferase, putative [Rici	0.814	0.559	0.658	6e-73
449466616	360	PREDICTED: release factor glutamine meth	0.872	0.588	0.594	6e-72
363807000	364	uncharacterized protein LOC100796269 [Gl	0.962	0.642	0.585	1e-70
358348140	403	Protein hemK [Medicago truncatula] gi|35	0.794	0.478	0.639	3e-69
356525752	361	PREDICTED: protein methyltransferase hem	0.950	0.639	0.584	3e-69
224073134	360	predicted protein [Populus trichocarpa]	0.814	0.55	0.631	5e-68
147788825	304	hypothetical protein VITISV_010350 [Viti	0.925	0.740	0.528	7e-64
225462209	356	PREDICTED: protein methyltransferase hem	0.934	0.637	0.537	8e-64
297797429	365	methylase family protein [Arabidopsis ly	0.851	0.567	0.578	4e-63
15237618	377	RNA methyltransferase family protein [Ar	0.851	0.549	0.573	5e-62

>gi|255566573|ref|XP_002524271.1| n6-DNA-methyltransferase, putative [Ricinus communis] gi|223536462|gb|EEF38110.1| n6-DNA-methyltransferase, putative [Ricinus communis]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 162/199 (81%), Gaps = 1/199 (0%)

Query: 44  STPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWL 103
           S+ K + PLFL+PP YS +LS+L KW  WAK LASSV S+F + DNGPDS++L REL WL
Sbjct: 28  SSLKIQNPLFLRPPVYSTSLSELNKWQQWAKHLASSVGSSFVNLDNGPDSTLLCRELKWL 87

Query: 104 VEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVL 163
           +EDSLED SLIPQL  QNN ++V+LR  LDELY LW+QRIE+RKPFQY+VGCEHWRD VL
Sbjct: 88  IEDSLEDHSLIPQLCIQNNFRNVKLRASLDELYSLWRQRIEERKPFQYIVGCEHWRDFVL 147

Query: 164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI 223
           SV+EGV IPRPETEL++DLV    V +N+ L +G W DLGTGSGA+AIGIA++LG +G +
Sbjct: 148 SVQEGVLIPRPETELIIDLVKGA-VLNNEELSEGLWADLGTGSGALAIGIAKILGPQGRV 206

Query: 224 IAVDLNPLAAAVAAFNAQR 242
           IA DL+P+AA+VA +N QR
Sbjct: 207 IATDLSPVAASVATYNVQR 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466616|ref|XP_004151022.1| PREDICTED: release factor glutamine methyltransferase-like [Cucumis sativus] gi|449526004|ref|XP_004170005.1| PREDICTED: release factor glutamine methyltransferase-like [Cucumis sativus]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 166/227 (73%), Gaps = 15/227 (6%)

Query: 26  RAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFA 85
           RA L  P  + S     SS+  P+ PLFL+PP YS TL D  KWHNWAK L  SV S+F 
Sbjct: 7   RAYLVAPHRAKSIRPICSSSLNPQIPLFLRPPNYSVTLKDFHKWHNWAKILNCSVGSSFV 66

Query: 86  DSDNGPDSSILFRELNWLVEDSLEDPSLI----------PQLGFQNNSQSVRLRIGLDEL 135
           D+DNGPDS++L REL WLV+D++ED SL           P+LG +N    VRL++G++EL
Sbjct: 67  DTDNGPDSTLLHRELKWLVQDAVEDKSLSSELENEIEQNPELGLRN----VRLKVGIEEL 122

Query: 136 YGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
           Y LWKQRI +R+PFQY+VGCEHWRDL+LSVEEGV IPRPETE++VDLV  V V DN+ LR
Sbjct: 123 YRLWKQRIHERRPFQYIVGCEHWRDLILSVEEGVLIPRPETEVLVDLVEKV-VSDNEALR 181

Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           +G WVDLGTGSGAIAIGI R+L  +G +IA DL+ +A AVA +N QR
Sbjct: 182 EGLWVDLGTGSGAIAIGICRILEGRGRVIATDLSSIALAVAGYNVQR 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807000|ref|NP_001242318.1| uncharacterized protein LOC100796269 [Glycine max] gi|255645193|gb|ACU23094.1| unknown [Glycine max]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/241 (58%), Positives = 183/241 (75%), Gaps = 7/241 (2%)

Query: 1   MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
           MR++L+   R Y+ P   K S FS    L +PF SS  SSS +   KP+ PLFL+ P YS
Sbjct: 1   MRLTLSSVYRPYSFPTLLKSSSFS---TLCRPFCSSVLSSSPTCV-KPQVPLFLRQPIYS 56

Query: 61  ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
             L +LKKWH+WAK +A S+ STF DSDNGPDSS+L REL WL+ED++ED S+I +    
Sbjct: 57  TKLCELKKWHDWAKGVAFSIGSTFVDSDNGPDSSLLCRELKWLMEDAVEDHSMIVK--DD 114

Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
           ++ + V++R+G++ELY LWKQR+++R+PFQY+VGCEHWRDLVLSV+EGV IPRPETEL+V
Sbjct: 115 DSDERVKMRVGIEELYCLWKQRVQERRPFQYVVGCEHWRDLVLSVQEGVLIPRPETELLV 174

Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
           D V DV V +N+ L+ G W DLGTGSGA+AIGI  VLGS+G +IA DL+P+A AVAA+N 
Sbjct: 175 DFVDDV-VSENEDLKRGVWADLGTGSGALAIGIGGVLGSEGRVIATDLSPVAVAVAAYNV 233

Query: 241 Q 241
           Q
Sbjct: 234 Q 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348140|ref|XP_003638107.1| Protein hemK [Medicago truncatula] gi|355504042|gb|AES85245.1| Protein hemK [Medicago truncatula]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 126/197 (63%), Positives = 158/197 (80%), Gaps = 4/197 (2%)

Query: 47  KPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVED 106
           KP+ P+FL+PP YS  L+DLKKWHNWAK +A S+ S+F  SDNGPDS+IL REL W +ED
Sbjct: 41  KPQVPIFLRPPIYSTKLNDLKKWHNWAKNIAFSIGSSFVQSDNGPDSTILCRELKWFIED 100

Query: 107 SLEDP-SLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSV 165
            +E+  SL  Q+G  ++++ V++R  ++ELY LWKQRIE+RKPFQY+VGCEHW+DLVLSV
Sbjct: 101 VVENHHSLFSQVG--DDNEKVKMRADIEELYCLWKQRIEERKPFQYIVGCEHWKDLVLSV 158

Query: 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225
           +EGV IPRPETEL+VDLVSDV V  N+GL+ G W DLGTGSGA+AIGI RVLG  G +I 
Sbjct: 159 QEGVLIPRPETELIVDLVSDV-VSKNEGLKRGVWADLGTGSGALAIGIGRVLGDGGKVIG 217

Query: 226 VDLNPLAAAVAAFNAQR 242
            DL+P+A AVA +N QR
Sbjct: 218 SDLSPVAVAVAGYNVQR 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525752|ref|XP_003531487.1| PREDICTED: protein methyltransferase hemK homolog [Glycine max]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/243 (58%), Positives = 181/243 (74%), Gaps = 12/243 (4%)

Query: 1   MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
           M ++L+   R Y+ P   K S FS    L++PF SS+ SS  +   KP+ PLFL+PP YS
Sbjct: 1   MNLTLSSVYRPYSFPTLLKSSSFS---TLSRPFCSSALSSPPTCV-KPQVPLFLRPPIYS 56

Query: 61  ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
             L +LKKWH+WAK +A S+ STF  SDNG DSSILFRE+ WL+ED++ED S+I      
Sbjct: 57  TKLCELKKWHDWAKGVAFSIGSTFVHSDNGRDSSILFREMKWLMEDAVEDHSMIV----- 111

Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
            + + V++RIG+DELY LWKQRI +R+PFQY+VGCEHWRDLVLSV+EGV IPRPETEL+V
Sbjct: 112 -DDERVKMRIGIDELYCLWKQRIHERRPFQYVVGCEHWRDLVLSVQEGVLIPRPETELIV 170

Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFN 239
           D V DV V +N+ L+ G W DLGTGSGA+AIGI RVL S+G  ++A DL+P+A AVAA+N
Sbjct: 171 DFVYDV-VSENEDLKSGVWADLGTGSGALAIGIGRVLRSEGGRVVATDLSPVAVAVAAYN 229

Query: 240 AQR 242
            QR
Sbjct: 230 VQR 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073134|ref|XP_002303988.1| predicted protein [Populus trichocarpa] gi|222841420|gb|EEE78967.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 130/206 (63%), Positives = 158/206 (76%), Gaps = 8/206 (3%)

Query: 44  STPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWL 103
           +T KPK PLFL+PP YS T SDL+KWH WAK LASSV S+F +SDNGPDS++L RELNWL
Sbjct: 27  TTIKPKIPLFLRPPTYSVTSSDLQKWHGWAKGLASSVGSSFVESDNGPDSTLLCRELNWL 86

Query: 104 VEDSLED-------PSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCE 156
           +EDSLE+            +    +  ++V LRI LD+LY LWKQRIE+R+PFQY+VGCE
Sbjct: 87  LEDSLENRSSSSCFSFAACKYDTFDGIENVMLRISLDDLYQLWKQRIEERRPFQYIVGCE 146

Query: 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV 216
           HWRDLVLSV+EGV IPRPETEL+VDLVSD  V +N  L  G W D+GTGSGAIAIGI+++
Sbjct: 147 HWRDLVLSVQEGVLIPRPETELIVDLVSDA-VSNNQELGQGLWADVGTGSGAIAIGISKI 205

Query: 217 LGSKGSIIAVDLNPLAAAVAAFNAQR 242
           L S G +IA DL+P+A +VA FN QR
Sbjct: 206 LRSYGRVIATDLSPVAVSVAMFNVQR 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788825|emb|CAN62344.1| hypothetical protein VITISV_010350 [Vitis vinifera]

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 129/244 (52%), Positives = 175/244 (71%), Gaps = 19/244 (7%)

Query: 1   MRVSLTRACRFY--TSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPK 58
           M++S+ RAC  +  + P++           L++P S  SS  S S   KP+ PLFL+PP 
Sbjct: 1   MKLSIPRACGSWXKSPPVS---------TTLHKPISFYSSIPSSSPL-KPQVPLFLRPPI 50

Query: 59  YSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLG 118
           +SATLSDL+KWH+WAK L          SD+ PD ++L REL WL+ED+LE  S +PQ+G
Sbjct: 51  HSATLSDLQKWHHWAKTLP------VPHSDDPPDPTLLRRELKWLLEDALEVHSSVPQMG 104

Query: 119 FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETEL 178
             ++ + ++LR  L++LY +W+QRIE+R+PFQY+VGCEHWRDLVLSV++GV IPRPETE+
Sbjct: 105 SHSDDRPIKLRTXLEQLYSVWRQRIEERRPFQYVVGCEHWRDLVLSVQDGVLIPRPETEV 164

Query: 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238
            VDLV DV+ ++ D L  G W DLGTGSGAIAIGI R+LG +G +IA DL+P+A +VA+F
Sbjct: 165 FVDLVGDVVTQNGD-LTQGLWADLGTGSGAIAIGIGRILGPRGRVIATDLSPVAVSVASF 223

Query: 239 NAQR 242
           N QR
Sbjct: 224 NVQR 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462209|ref|XP_002269180.1| PREDICTED: protein methyltransferase hemK homolog [Vitis vinifera]

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 130/242 (53%), Positives = 175/242 (72%), Gaps = 15/242 (6%)

Query: 1   MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
           M++S+ RAC  ++   +P  S       L++P S  SS  S S   KP+ PLFL+PP +S
Sbjct: 1   MKLSIPRACGSWSK--SPPVS-----TTLHKPISFYSSIPSSSPL-KPQVPLFLRPPIHS 52

Query: 61  ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
           ATLSDL+KWH+WAK L          SD+ PD ++L REL WL+ED+LE  S +PQ+G  
Sbjct: 53  ATLSDLQKWHHWAKTLP------VPHSDDPPDPTLLRRELKWLLEDALEVHSSVPQMGSH 106

Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
           ++ + ++LR  L++LY +W+QRIE+R+PFQY+VGCEHWRDLVLSV++GV IPRPETE+ V
Sbjct: 107 SDDRPIKLRTSLEQLYSVWRQRIEERRPFQYVVGCEHWRDLVLSVQDGVLIPRPETEVFV 166

Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
           DLV DV+ ++ D L  G W DLGTGSGAIAIGI R+LG +G +IA DL+P+A +VA+FN 
Sbjct: 167 DLVGDVVTQNGD-LTQGLWADLGTGSGAIAIGIGRILGPRGRVIATDLSPVAVSVASFNV 225

Query: 241 QR 242
           QR
Sbjct: 226 QR 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797429|ref|XP_002866599.1| methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312434|gb|EFH42858.1| methylase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/211 (57%), Positives = 162/211 (76%), Gaps = 4/211 (1%)

Query: 35  SSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSS 94
           + SS+ ++S +  PKTPLFL+ P ++ +LS++ KWH+WAK LASSV  +  +S++  DS 
Sbjct: 26  AKSSTETNSLSITPKTPLFLRTPSHATSLSEVWKWHDWAKDLASSVEESSTNSEDVLDSV 85

Query: 95  ILFRELNWLVEDSL-EDPSLIPQLG--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQY 151
           IL REL WL+EDS+ +DP +I        N  ++V+LR  L+ELY LW+QRIEKR+PFQY
Sbjct: 86  ILHRELKWLIEDSIVDDPLVILHRSEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQY 145

Query: 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211
           +VGCE+WRDLVL VEEGV IPRPETEL+VD+V +++ RD +  + GFW DLGTGSGAIAI
Sbjct: 146 VVGCEYWRDLVLCVEEGVLIPRPETELIVDMVEELVTRD-EWFKKGFWADLGTGSGAIAI 204

Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           GIA+VLGS+G +IA DL+P+A AVA  N QR
Sbjct: 205 GIAKVLGSRGRVIATDLSPVAVAVAGKNVQR 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237618|ref|NP_201220.1| RNA methyltransferase family protein [Arabidopsis thaliana] gi|10176963|dbj|BAB10283.1| unnamed protein product [Arabidopsis thaliana] gi|15451004|gb|AAK96773.1| Unknown protein [Arabidopsis thaliana] gi|30725624|gb|AAP37834.1| At5g64156 [Arabidopsis thaliana] gi|332010464|gb|AED97847.1| RNA methyltransferase family protein [Arabidopsis thaliana]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 121/211 (57%), Positives = 158/211 (74%), Gaps = 4/211 (1%)

Query: 35  SSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSS 94
           S SS  + S +  PKTPL+L+ P ++ +LS++ KWH+WAK LASSV  +  +S++  DS 
Sbjct: 38  SKSSRPTKSLSITPKTPLYLRTPSHATSLSEVWKWHDWAKDLASSVEESSKNSEDTLDSV 97

Query: 95  ILFRELNWLVEDSL-EDPSLIPQLG--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQY 151
           IL REL WL+EDS+ +DP +I        N  ++V+LR  L+ELY LW+QRIEKR+PFQY
Sbjct: 98  ILHRELKWLIEDSIVDDPLVILHRSEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQY 157

Query: 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211
           +VGCEHWRDLVL VEEGV IPRPETEL+VD+V +++ RD +  +   W DLGTGSGAIAI
Sbjct: 158 VVGCEHWRDLVLCVEEGVLIPRPETELIVDMVEELVTRD-EWFKKDIWADLGTGSGAIAI 216

Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           GIA+VLGS+G +IA DL+P+A AVA  N QR
Sbjct: 217 GIAKVLGSRGRVIATDLSPVAIAVAGHNVQR 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2164396	377	AT5G64150 [Arabidopsis thalian	0.679	0.437	0.526	8.1e-44

TAIR|locus:2164396 AT5G64150 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 89/169 (52%), Positives = 120/169 (71%)

Query:    59 YSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSL-EDPSLIPQL 117
             ++ +LS++ KWH+WAK LASSV  +  +S++  DS IL REL WL+EDS+ +DP +I   
Sbjct:    62 HATSLSEVWKWHDWAKDLASSVEESSKNSEDTLDSVILHRELKWLIEDSIVDDPLVILHR 121

Query:   118 G--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPE 175
                  N  ++V+LR  L+ELY LW+QRIEKR+PFQY+VGCEHWRDLVL VEEGV IPRPE
Sbjct:   122 SEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQYVVGCEHWRDLVLCVEEGVLIPRPE 181

Query:   176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTXXXXXXXXXXRVLGSKGSII 224
             TEL+VD+V +++ RD +  +   W DLGT          +VLGS+G +I
Sbjct:   182 TELIVDMVEELVTRD-EWFKKDIWADLGTGSGAIAIGIAKVLGSRGRVI 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      243       192   0.00096  110 3  11 22  0.44    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  179 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.61u 0.14s 15.75t   Elapsed:  00:00:02
  Total cpu time:  15.61u 0.14s 15.75t   Elapsed:  00:00:02
  Start:  Thu May  9 21:22:28 2013   End:  Thu May  9 21:22:30 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=ISS

GO:0006479 "protein methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0032259 "methylation" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	6e-29
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	3e-25
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	3e-24
TIGR00536	284	TIGR00536, hemK_fam, HemK family putative methylas	1e-23
TIGR03533	284	TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m	5e-12
PRK11805	307	PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth	3e-10
TIGR03704	251	TIGR03704, PrmC_rel_meth, putative protein-(glutam	4e-07
PRK14966	423	PRK14966, PRK14966, unknown domain/N5-glutamine S-	3e-06
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	1e-05
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	2e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	4e-05
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	4e-05
PRK01544	506	PRK01544, PRK01544, bifunctional N5-glutamine S-ad	4e-05
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	1e-04
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	2e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-04
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	3e-04
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	8e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.002
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	0.004

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score =  109 bits (275), Expect = 6e-29
 Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)

Query: 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN 191
           L+    L  +R    +P QY++G   +  L   V  GV IPRPETE +V+   + L    
Sbjct: 50  LERFRALVARRA-AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL-LLK 107

Query: 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           + LR    +DLGTGSGAIA+ +A+       + AVD++P A AVA  NA+ 
Sbjct: 108 EPLR---VLDLGTGSGAIALALAKERPDA-EVTAVDISPEALAVARRNAKH 154

Length = 275

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 99.1 bits (248), Expect = 3e-25
 Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 8/112 (7%)

Query: 133 DELYGLWK--QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD 190
           +EL        R  K +P  Y++G   +  L   V  GV IPRPETE +V+   + L   
Sbjct: 28  EELARFDALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPETEELVEAALERL--K 85

Query: 191 NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
              LR    +DLGTGSGAIA+ +A+       + AVD++P A AVA  NA R
Sbjct: 86  KGPLR---VLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR 133

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 97.4 bits (243), Expect = 3e-24
 Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 6/104 (5%)

Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF 198
             +R  + +P  Y++G   +  L   V+EGV IPRP+TEL+V+    +L++      D  
Sbjct: 59  LLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL-----DKR 113

Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            +DLGTGSGAIAI +A+       +IAVD++P A A+A  NA+R
Sbjct: 114 ILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAER 156

Length = 280

>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 28/184 (15%)

Query: 62  TLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQN 121
           T+ +  +W       ASS  S     +N    ++L      L+   L     +       
Sbjct: 2   TIQEALRW-------ASSALSRAIARENPWLEALL------LLLHDLGRERDLLLAFLT- 47

Query: 122 NSQSVRLRIGLDELYGLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETEL 178
                   +  DE   +  + + +R    P  YL+G + +  L   V E V IPRPETE 
Sbjct: 48  ------EELTPDEKERI-FRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEE 100

Query: 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238
           +V+     L+  N  L     +DLGTGSG IA+ +A    +   +IAVD++P A AVA  
Sbjct: 101 LVEKALASLISQNPILH---ILDLGTGSGCIALALAYEFPNA-EVIAVDISPDALAVAEE 156

Query: 239 NAQR 242
           NA++
Sbjct: 157 NAEK 160

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284

>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

 Score = 63.7 bits (156), Expect = 5e-12
 Identities = 44/123 (35%), Positives = 57/123 (46%), Gaps = 30/123 (24%)

Query: 133 DELYGLWKQRIEKRKPFQYLVGCEHW-RDLVLSVEEGVFIPR-PETELMVDLVSDVLVRD 190
           + +  L ++RIE+R P  YL   E W   L   V+E V IPR P  EL            
Sbjct: 62  ERILELIERRIEERIPVAYLTN-EAWFAGLEFYVDERVLIPRSPIAEL------------ 108

Query: 191 NDGLRDGF--WV---------DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
              + DGF  W+         DL TGSG IAI  A     +  + AVD++P A AVA  N
Sbjct: 109 ---IEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEIN 164

Query: 240 AQR 242
            +R
Sbjct: 165 IER 167

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284

>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 30/116 (25%)

Query: 140 KQRIEKRKPFQYLVGCEHW-RDLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDG 197
           ++RI +R P  YL   E W   L   V+E V +PR P  EL               + DG
Sbjct: 81  ERRINERIPAAYLTN-EAWFCGLEFYVDERVLVPRSPIAEL---------------IEDG 124

Query: 198 F--WV---------DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           F  W+         DL TGSG IAI  A        + AVD++P A AVA  N +R
Sbjct: 125 FAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIER 179

Length = 307

>gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 133 DELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND 192
            EL  +  +R+    P ++++G   +  L ++V+ GVF+PR  TE +VD           
Sbjct: 28  GELAAMVDRRVAG-LPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDE---AAALARP 83

Query: 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
                  VDL  GSGA+   +A  L     + A D++P A   A  N
Sbjct: 84  RSGTLVVVDLCCGSGAVGAALAAALDGI-ELHAADIDPAAVRCARRN 129

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251

>gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
           QR    +P  Y++G   +     +V   V IPRPETE    LV  VL R  +  R   W 
Sbjct: 203 QRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETE---HLVEAVLARLPENGR--VW- 256

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
           DLGTGSGA+A+ +A +      + A D++P A   A  NA
Sbjct: 257 DLGTGSGAVAVTVA-LERPDAFVRASDISPPALETARKNA 295

Length = 423

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           D+G GSG +AI   + LG+K  ++ VD++P+A   A  NA+ 
Sbjct: 166 DVGCGSGILAIAALK-LGAK-KVVGVDIDPVAVRAAKENAEL 205

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 201 DLGTGSG--AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           D+G GSG  AIA   A  LG+K  ++AVD++P A   A  NA+ 
Sbjct: 125 DVGCGSGILAIA---AAKLGAK-KVLAVDIDPQAVEAARENAEL 164

Length = 250

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           +D G GSGA  +  AR  G    ++ V+L+P AAA+A      
Sbjct: 5   LDPGAGSGAFLLAAAR-AGPDARVVGVELDPEAAALARRRLAL 46

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
             R G   W D+G G+G+I I  A   G  G +IA++ +  A  +   NA R
Sbjct: 31  RPRPGDRLW-DIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAAR 80

Length = 187

>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 21/120 (17%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLV----------------- 183
           +R  K +P  Y+ G + +      V + V IPR +TE++VD+V                 
Sbjct: 64  ERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLN 123

Query: 184 ---SDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
                  +  N   +    ++LGTGSG IAI +   L    ++IA D++  A  VA  NA
Sbjct: 124 PCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNA 182

Length = 506

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 9/75 (12%)

Query: 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIA 225
            GV+ P+ +T+L+ D     L  +  GL  G  V DL TGSGA+A+  A   G+ GS+ A
Sbjct: 13  PGVYRPQEDTQLLAD----ALAAE--GLGPGRRVLDLCTGSGALAVAAAA-AGA-GSVTA 64

Query: 226 VDLNPLAAAVAAFNA 240
           VD++  A   A  NA
Sbjct: 65  VDISRRAVRSARLNA 79

Length = 223

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           D+G GSG +AI  A+ LG+K  ++ VD++P A   A  NA+ 
Sbjct: 168 DVGCGSGILAIAAAK-LGAK-KVVGVDIDPQAVEAARENARL 207

Length = 300

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           +DLG G+G +   +A  LG    ++ +D++  A   A  NA++
Sbjct: 8   LDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK 50

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224
           + + V+ P  ++ L+ +     + +  D +     +++GTGSG +AI  A+  G K  ++
Sbjct: 1   LNDEVYEPAEDSFLLAENA---VDKKGDRV-----LEVGTGSGIVAIVAAK-NGKK--VV 49

Query: 225 AVDLNPLAAAVAAFNAQ 241
            VD+NP A   A  NA+
Sbjct: 50  GVDINPYAVECAKCNAK 66

Length = 188

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           +DLG G+GA+A+ +A   G    +  VD++P+A  +A   A  
Sbjct: 3   LDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAA 43

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            +D+G G+G++AI +AR L     +  VDL+P    +A  NA+ 
Sbjct: 5   VLDIGCGTGSLAIELAR-LFPGARVTGVDLSPEMLELARENAKL 47

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 159 RDLVLSVEEGVFIPRPETEL---MVD--LVSDVL-VRDNDGLRDGFWV-DLGTGSGAIAI 211
           ++L + +E+    P P+  L        L + +L V    G  +G  V DLG G+G +AI
Sbjct: 2   KELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAI 61

Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           G A +LG+   ++AVD++P A  +A  NA+ 
Sbjct: 62  G-AALLGAS-RVLAVDIDPEALEIARANAEE 90

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.96
COG2890	280	HemK Methylase of polypeptide chain release factor	99.96
KOG2904	328	consensus Predicted methyltransferase [General fun	99.95
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.95
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.95
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.95
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.93
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.91
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.88
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.76
PLN02672	1082	methionine S-methyltransferase	99.68
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.39
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.34
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.29
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.29
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.24
PLN02336	475	phosphoethanolamine N-methyltransferase	99.18
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.14
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.09
PRK14967	223	putative methyltransferase; Provisional	99.09
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.08
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.07
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.0
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.99
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.99
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.99
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.99
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.98
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.97
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.96
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.96
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.94
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.91
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.9
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.9
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.89
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.89
COG4123	248	Predicted O-methyltransferase [General function pr	98.85
PRK14968	188	putative methyltransferase; Provisional	98.85
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.84
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.83
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.81
PRK07402	196	precorrin-6B methylase; Provisional	98.81
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.8
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.8
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.77
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.77
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.76
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.72
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.7
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.68
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.67
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.65
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.63
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.63
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.63
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.61
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.6
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.59
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.59
PRK12335	287	tellurite resistance protein TehB; Provisional	98.59
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.58
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.56
PLN02490	340	MPBQ/MSBQ methyltransferase	98.56
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.55
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.53
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.53
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.53
PHA03411	279	putative methyltransferase; Provisional	98.53
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.53
PRK11207	197	tellurite resistance protein TehB; Provisional	98.52
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.5
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.48
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.48
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.47
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.46
PRK08317	241	hypothetical protein; Provisional	98.45
PLN02244	340	tocopherol O-methyltransferase	98.43
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.43
TIGR03438	301	probable methyltransferase. This model represents	98.43
PHA03412	241	putative methyltransferase; Provisional	98.43
PRK06202	232	hypothetical protein; Provisional	98.41
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.41
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.41
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.41
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.4
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.39
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.38
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.38
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.35
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.34
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.34
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.34
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.33
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.31
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.31
PRK05785	226	hypothetical protein; Provisional	98.31
PRK04266	226	fibrillarin; Provisional	98.3
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.3
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.28
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.28
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.28
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.27
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.25
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.25
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.25
PRK04148	134	hypothetical protein; Provisional	98.24
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.23
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.23
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.22
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.22
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.21
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.21
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.21
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.21
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.2
PRK06922	677	hypothetical protein; Provisional	98.2
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.19
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.18
PLN02476	278	O-methyltransferase	98.18
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.18
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.17
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.16
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.16
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.15
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.14
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.14
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.13
KOG1271	227	consensus Methyltransferases [General function pre	98.11
PRK04457	262	spermidine synthase; Provisional	98.1
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.09
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.08
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.07
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.03
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.02
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.01
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.01
COG4122	219	Predicted O-methyltransferase [General function pr	97.96
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.96
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.95
PLN03075	296	nicotianamine synthase; Provisional	97.93
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.93
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.91
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.9
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.89
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.89
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.88
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.87
PF13679	141	Methyltransf_32: Methyltransferase domain	97.87
KOG2899	288	consensus Predicted methyltransferase [General fun	97.85
PTZ00146	293	fibrillarin; Provisional	97.79
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.79
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.79
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.78
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.76
COG2520	341	Predicted methyltransferase [General function pred	97.75
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.75
TIGR00438	188	rrmJ cell division protein FtsJ.	97.73
PLN02336	475	phosphoethanolamine N-methyltransferase	97.69
PRK00811	283	spermidine synthase; Provisional	97.68
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.67
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.65
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.63
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.59
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.56
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.53
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.48
PLN02366	308	spermidine synthase	97.46
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.45
KOG3010	261	consensus Methyltransferase [General function pred	97.45
COG3897	218	Predicted methyltransferase [General function pred	97.42
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.34
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.32
PRK03612	521	spermidine synthase; Provisional	97.31
PRK01581	374	speE spermidine synthase; Validated	97.25
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.25
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.19
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.16
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.12
KOG2730	263	consensus Methylase [General function prediction o	97.1
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.94
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.88
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.84
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.81
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.73
COG4076	252	Predicted RNA methylase [General function predicti	96.7
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.68
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.66
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.63
KOG2361	264	consensus Predicted methyltransferase [General fun	96.62
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.62
KOG2912	419	consensus Predicted DNA methylase [Function unknow	96.62
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.57
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.51
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.5
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.36
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.32
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.31
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.23
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.22
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.19
PRK10742	250	putative methyltransferase; Provisional	96.17
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	96.12
PRK11524	284	putative methyltransferase; Provisional	96.05
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	95.96
PLN02823	336	spermine synthase	95.94
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	95.92
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	95.89
PRK13699	227	putative methylase; Provisional	95.82
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.67
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.64
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	95.58
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	95.54
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.52
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.35
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.29
PHA01634	156	hypothetical protein	95.2
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	94.93
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	94.93
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.54
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.39
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	94.38
COG2521	287	Predicted archaeal methyltransferase [General func	94.36
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.18
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	94.18
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	94.15
KOG3115	249	consensus Methyltransferase-like protein [General	94.06
KOG4300	252	consensus Predicted methyltransferase [General fun	93.86
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	93.86
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	93.85
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	93.81
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	93.79
PRK00536	262	speE spermidine synthase; Provisional	93.2
COG0286	489	HsdM Type I restriction-modification system methyl	92.88
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	92.41
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	91.89
KOG1227	351	consensus Putative methyltransferase [General func	91.87
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	91.37
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	91.09
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	91.05
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.98
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	90.96
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	90.63
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	90.63
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	90.46
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	89.92
KOG2920	282	consensus Predicted methyltransferase [General fun	89.4
KOG2078	495	consensus tRNA modification enzyme [RNA processing	87.8
PRK10458	467	DNA cytosine methylase; Provisional	87.08
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	87.08
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	86.7
COG1565	370	Uncharacterized conserved protein [Function unknow	86.4
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	86.19
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	85.81
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	85.69
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	85.64
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	85.43
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	83.1
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	82.75
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	82.44
KOG2940	325	consensus Predicted methyltransferase [General fun	82.37
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	81.09
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	80.58
KOG3201	201	consensus Uncharacterized conserved protein [Funct	80.04

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.96  E-value=6e-29  Score=240.73  Aligned_cols=162  Identities=25%  Similarity=0.294  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (243)
Q Consensus        65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~  144 (243)
                      ++.++++|+...+.++|+..           +..||+||+++++++++..+.+  +   .+..++.+..+.++.+.+||.
T Consensus         4 ~~~~~l~~~~~~l~~~g~~~-----------~~~~a~~Ll~~~l~~~~~~l~~--~---~~~~l~~~~~~~~~~~~~rr~   67 (506)
T PRK01544          4 SIKQILSDATDKLNKIGISS-----------PQLEARILLQHVINKPIEYLLI--N---LDEQLNEAEIEAFEKLLERRL   67 (506)
T ss_pred             cHHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHCcCHHHHhh--c---cCCCCCHHHHHHHHHHHHHHH
Confidence            47788999999998777632           3569999999999998876542  1   123456666667777888999


Q ss_pred             CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhc------------------C--CCCCCCcEEEecc
Q 026108          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD------------------N--DGLRDGFWVDLGT  204 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~------------------~--~~~~~~rVLDLGt  204 (243)
                      +|+|+|||+|+++|+|++|.|+++|||||||||.|++.+++.+...                  .  ...++.+|||+||
T Consensus        68 ~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~  147 (506)
T PRK01544         68 KHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGT  147 (506)
T ss_pred             cCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccC
Confidence            9999999999999999999999999999999999999998765210                  0  0112357999999


Q ss_pred             CCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       205 GSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      |||++++.+++.+ ++++|+|+|+|+.|+++|++|++.+
T Consensus       148 GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~  185 (506)
T PRK01544        148 GSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKY  185 (506)
T ss_pred             chhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc
Confidence            9999999999986 7899999999999999999998753

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1e-28  Score=223.09  Aligned_cols=156  Identities=31%  Similarity=0.364  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (243)
Q Consensus        65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~  144 (243)
                      ++.+|++|+.+++.++| ..           +..+++.++.+.++.++..+..  +   .+..+..+..+.+..+..|+.
T Consensus         2 ~~~~~l~~a~~~l~~~~-~~-----------~~~~~~~l~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~rr~   64 (280)
T COG2890           2 TIRQALREAVSRLSAAG-GT-----------PNLDAELLLLHLLGKPRDQLLA--H---PEAELSEEELERLRELLERRA   64 (280)
T ss_pred             cHHHHHHHHHHHHHhcC-CC-----------CcccHHHHHHHHhCCCHHHHhh--c---cccccCHHHHHHHHHHHHHHH
Confidence            68999999999999888 11           1336888999999987765431  1   222345444444445555559


Q ss_pred             CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      +|+|++||+|..+|++++|.|+++|+||||+||+|++.++..+ ...   .. +|||||||||||++++|+++ ++++|+
T Consensus        65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~-~~~---~~-~ilDlGTGSG~iai~la~~~-~~~~V~  138 (280)
T COG2890          65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALL-LQL---DK-RILDLGTGSGAIAIALAKEG-PDAEVI  138 (280)
T ss_pred             CCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhh-hhc---CC-cEEEecCChHHHHHHHHhhC-cCCeEE
Confidence            9999999999999999999999999999999999999987433 111   11 69999999999999999996 889999


Q ss_pred             EEeCCHHHHHHHHHHHHhC
Q 026108          225 AVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~~~  243 (243)
                      |+|||++|+++|++|+++|
T Consensus       139 a~Dis~~Al~~A~~Na~~~  157 (280)
T COG2890         139 AVDISPDALALARENAERN  157 (280)
T ss_pred             EEECCHHHHHHHHHHHHHc
Confidence            9999999999999999875

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.95  E-value=8.1e-28  Score=214.33  Aligned_cols=171  Identities=30%  Similarity=0.483  Sum_probs=137.5

Q ss_pred             cCC-ccccCChHHHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccc-cchh
Q 026108           54 LKP-PKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVR-LRIG  131 (243)
Q Consensus        54 ~r~-~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~-l~~~  131 (243)
                      .+| |.|+.....|.-|..|+. .++++|+.-           .+.+-.||+.|+++..-...    .+...+.+ ....
T Consensus        23 ~~P~p~hat~~sal~~~~~W~~-~l~~~~~e~-----------~k~~~~~i~shvL~~Kf~si----~ds~~~~pl~~~q   86 (328)
T KOG2904|consen   23 IRPTPSHATSLSALELLLPWTR-TLEQAGEES-----------SKLSYKWIVSHVLPDKFWSI----EDSIVDDPLVILQ   86 (328)
T ss_pred             CCCCCccCccchhhHhhchHHH-HHHHhcCch-----------hhhhhHHHHHhhhhhhhccc----cchhhccccchhH
Confidence            344 778888899999999986 566666541           24467899999998762111    11222223 3446


Q ss_pred             HHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHH
Q 026108          132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI  211 (243)
Q Consensus       132 ~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai  211 (243)
                      ++.+.++|.+|.. |+|+|||+|.++|.++.+.+.|+|||||||||.+++.+++.+ ......++..|||+|||||||++
T Consensus        87 l~~i~~~~~~R~~-r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~-~~~~~~~~~~ildlgtGSGaIsl  164 (328)
T KOG2904|consen   87 LESIRWACLQRYK-RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDAL-NNSEHSKHTHILDLGTGSGAISL  164 (328)
T ss_pred             HHHHHHHHHHHHh-cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHH-hhhhhcccceEEEecCCccHHHH
Confidence            7888888887775 999999999999999999999999999999999999999987 33334445679999999999999


Q ss_pred             HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       212 ~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+++.+ ++..|+|||.|+.|+.+|.+|++++
T Consensus       165 sll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~  195 (328)
T KOG2904|consen  165 SLLHGL-PQCTVTAIDVSKAAIKLAKENAQRL  195 (328)
T ss_pred             HHHhcC-CCceEEEEeccHHHHHHHHHHHHHH
Confidence            999998 7899999999999999999999874

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.95  E-value=6.4e-28  Score=220.41  Aligned_cols=171  Identities=27%  Similarity=0.289  Sum_probs=138.1

Q ss_pred             cccCChHHHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHH
Q 026108           58 KYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYG  137 (243)
Q Consensus        58 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  137 (243)
                      +++..++++.++++|+...+.++|+.+++..  .+   +..|+++|+++++++++..+.+  .   .+..++.+..+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~---~~~~a~~ll~~~l~~~~~~l~~--~---~~~~l~~~~~~~~~   77 (307)
T PRK11805          8 EAVNELHTIRDLLRWAVSRFNAAGLFFGHGT--DN---AWDEAVQLVLHALHLPLDIPEP--F---LDARLTPSEKARIL   77 (307)
T ss_pred             cchhhhhHHHHHHHHHHHHHHhcCCccCCCC--CC---HHHHHHHHHHHHHCcCHHHHhh--c---ccCCCCHHHHHHHH
Confidence            5677899999999999999988887655421  11   3569999999999998866532  1   12245555556666


Q ss_pred             HHHhhhc-CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHH-HhhhcCCCCCCCcEEEeccCCcHHHHHHHH
Q 026108          138 LWKQRIE-KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGAIAIGIAR  215 (243)
Q Consensus       138 ~~~~R~~-~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~-~l~~~~~~~~~~rVLDLGtGSG~iai~LA~  215 (243)
                      .+.+||. +|+|+|||+|+++|+|++|.|+++||||||+||.+++.++. ++ ...   ...+|||+|||+|++++.+++
T Consensus        78 ~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~-~~~---~~~~VLDlG~GsG~iai~la~  153 (307)
T PRK11805         78 ELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWL-EDP---PVTRILDLCTGSGCIAIACAY  153 (307)
T ss_pred             HHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHh-ccC---CCCEEEEEechhhHHHHHHHH
Confidence            7777876 79999999999999999999999999999999999887765 44 211   125799999999999999999


Q ss_pred             HhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          216 VLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       216 ~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+ ++++|+|+|+|+.|+++|++|++++
T Consensus       154 ~~-p~~~V~avDis~~al~~A~~n~~~~  180 (307)
T PRK11805        154 AF-PDAEVDAVDISPDALAVAEINIERH  180 (307)
T ss_pred             HC-CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            85 7899999999999999999998753

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.95  E-value=2e-27  Score=214.85  Aligned_cols=165  Identities=28%  Similarity=0.310  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhh
Q 026108           64 SDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRI  143 (243)
Q Consensus        64 ~~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~  143 (243)
                      +++.++++|+...+.++++.+.+.   .++  +..|++||+++++++++..+.+  +   .+..++.+..+.+..+.+||
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~--~~~~a~~ll~~~l~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~rr   71 (284)
T TIGR03533         2 HTIRDFLRWAVSRFNAAGLFFGHG---TDN--AWDEAVYLVLHALHLPLDILEP--F---LDARLTPSEKERILELIERR   71 (284)
T ss_pred             ccHHHHHHHHHHHHHhcCCcccCC---CCC--HHHHHHHHHHHHHCcCHHHHhh--c---ccCCCCHHHHHHHHHHHHHH
Confidence            568889999999998877654321   111  3569999999999998876542  1   12245555555666666777


Q ss_pred             c-CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHH-HhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCc
Q 026108          144 E-KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG  221 (243)
Q Consensus       144 ~-~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~-~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a  221 (243)
                      . +++|+|||+|+++|+|++|.|+++||||||+||.+++.++. ++ ..   .++.+|||+|||+|++++.+++.. +++
T Consensus        72 ~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~-~~---~~~~~vLDlG~GsG~i~~~la~~~-~~~  146 (284)
T TIGR03533        72 IEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWL-EP---EPVKRILDLCTGSGCIAIACAYAF-PEA  146 (284)
T ss_pred             HhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHh-cc---CCCCEEEEEeCchhHHHHHHHHHC-CCC
Confidence            5 79999999999999999999999999999999999988765 44 11   123579999999999999999985 788


Q ss_pred             EEEEEeCCHHHHHHHHHHHHhC
Q 026108          222 SIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       222 ~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +|+|+|+|+.|++.|++|++++
T Consensus       147 ~v~avDis~~al~~A~~n~~~~  168 (284)
T TIGR03533       147 EVDAVDISPDALAVAEINIERH  168 (284)
T ss_pred             EEEEEECCHHHHHHHHHHHHHc
Confidence            9999999999999999999753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.95  E-value=2.3e-27  Score=213.81  Aligned_cols=160  Identities=30%  Similarity=0.339  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (243)
Q Consensus        65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~  144 (243)
                      ++.++++|+...+.++|+.       .+   +..|+++|++|++++++..+..  +   .+..++.+..+.+..+.+||.
T Consensus         2 ~~~~~~~~~~~~l~~~~~~-------~~---~~~~a~~ll~~~l~~~~~~~~~--~---~~~~l~~~~~~~~~~~~~~r~   66 (284)
T TIGR00536         2 TIQEALRWASSALSRAIAR-------EN---PWLEALLLLLHDLGRERDLLLA--F---LTEELTPDEKERIFRLVLRRV   66 (284)
T ss_pred             cHHHHHHHHHHHHHHCCCC-------CC---HHHHHHHHHHHHHCcCHHHHhh--c---cCCCCCHHHHHHHHHHHHHHH
Confidence            4678899999999877652       01   3569999999999998876532  1   223456666667777788899


Q ss_pred             CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      +++|+|||+|.++|+|++|.|+++||||||+||.+++.++..+ ....  ...+|||+|||||++++.++..+ ++.+|+
T Consensus        67 ~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~-~~~~--~~~~vLDlG~GsG~i~l~la~~~-~~~~v~  142 (284)
T TIGR00536        67 KGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASL-ISQN--PILHILDLGTGSGCIALALAYEF-PNAEVI  142 (284)
T ss_pred             cCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHh-hhcC--CCCEEEEEeccHhHHHHHHHHHC-CCCEEE
Confidence            9999999999999999999999999999999999999988765 2111  12579999999999999999986 778999


Q ss_pred             EEeCCHHHHHHHHHHHHhC
Q 026108          225 AVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~~~  243 (243)
                      |+|+|++|+++|++|++++
T Consensus       143 avDis~~al~~a~~n~~~~  161 (284)
T TIGR00536       143 AVDISPDALAVAEENAEKN  161 (284)
T ss_pred             EEECCHHHHHHHHHHHHHc
Confidence            9999999999999999753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.93  E-value=1.7e-25  Score=211.31  Aligned_cols=137  Identities=28%  Similarity=0.339  Sum_probs=117.2

Q ss_pred             ccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCc
Q 026108           95 ILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRP  174 (243)
Q Consensus        95 ~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp  174 (243)
                      -+..|+++|++|++++++..+.+  +   .+..++.+..+.++.+.+||.+|+|+|||+|.++|+|++|.|++++|||||
T Consensus       162 ~p~~dA~~LL~~~l~~~r~~l~~--~---~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRp  236 (423)
T PRK14966        162 LPKNEARMLLQYASEYTRVQLLT--R---GGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRP  236 (423)
T ss_pred             ChHHHHHHHHHHHHCcCHHHHhh--C---CcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCc
Confidence            35679999999999998866532  1   122466666677788888999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       175 ~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +||.+++.++..+ .     ++.+|||+|||||++++.+++.. ++++|+|+|+|++|++.|++|++++
T Consensus       237 eTE~LVe~aL~~l-~-----~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~  298 (423)
T PRK14966        237 ETEHLVEAVLARL-P-----ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADL  298 (423)
T ss_pred             cHHHHHHHhhhcc-C-----CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc
Confidence            9999999988765 1     23579999999999999999875 7889999999999999999998753

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.91  E-value=5.9e-24  Score=189.10  Aligned_cols=121  Identities=27%  Similarity=0.348  Sum_probs=103.8

Q ss_pred             cHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCcc
Q 026108           96 LFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPE  175 (243)
Q Consensus        96 ~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~  175 (243)
                      ++.||+||++|+..                       ...++.+.+||.+|+|+|||+|.++|+|++|.+++++|+||++
T Consensus        13 ~~~~a~~l~~~~~~-----------------------~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~   69 (251)
T TIGR03704        13 AEDEAALLVDAART-----------------------PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRR   69 (251)
T ss_pred             HHHHHHHHHHhccC-----------------------HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCcc
Confidence            57799999999731                       2345666778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ||.+++.++.++ ...  ....+|||+|||+|++++.+++.+ ++.+|+|+|+|+.|++.|++|++.+
T Consensus        70 Te~Lv~~~l~~~-~~~--~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~  133 (251)
T TIGR03704        70 TEFLVDEAAALA-RPR--SGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA  133 (251)
T ss_pred             HHHHHHHHHHhh-ccc--CCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc
Confidence            999999998876 211  123479999999999999999886 7789999999999999999998753

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.88  E-value=2.8e-22  Score=177.78  Aligned_cols=151  Identities=31%  Similarity=0.333  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (243)
Q Consensus        65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~  144 (243)
                      ++.++++|+..++..                +..|+++|++++++.++..+.+  +   .+..++.+..+.+..+.+|+.
T Consensus         3 ~~~~~~~~~~~~l~~----------------~~~~~~~ll~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~   61 (275)
T PRK09328          3 TIAEALREATARLAS----------------PRLDAELLLAHVLGLSRTDLLL--N---PEEELTPEELERFRALVARRA   61 (275)
T ss_pred             cHHHHHHHHHHHHhC----------------cHHHHHHHHHHHHCcCHHHHhh--c---ccCCCCHHHHHHHHHHHHHHH
Confidence            467889999888853                1348999999999998765532  1   112334433355555666778


Q ss_pred             CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      +++|++|++|..+|++..|.+++++++|||+||.+++.+.... .   ..++.+|||+|||+|++++.++..+ ++.+|+
T Consensus        62 ~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~-~---~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~  136 (275)
T PRK09328         62 AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL-L---LKEPLRVLDLGTGSGAIALALAKER-PDAEVT  136 (275)
T ss_pred             cCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhc-c---ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEE
Confidence            9999999999999999999999999999999999999988544 1   1235689999999999999999986 789999


Q ss_pred             EEeCCHHHHHHHHHHHH
Q 026108          225 AVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~  241 (243)
                      |+|+|+.+++.|++|++
T Consensus       137 ~iDis~~~l~~a~~n~~  153 (275)
T PRK09328        137 AVDISPEALAVARRNAK  153 (275)
T ss_pred             EEECCHHHHHHHHHHHH
Confidence            99999999999999986

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.76  E-value=2.4e-18  Score=150.07  Aligned_cols=133  Identities=32%  Similarity=0.421  Sum_probs=109.3

Q ss_pred             HHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCccHHH
Q 026108           99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETEL  178 (243)
Q Consensus        99 Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TEl  178 (243)
                      |+++|+++++++.......    . .+..+..+..+.+....+|+..++|++|++|..+|++..|.+++++++|+|+++.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   75 (251)
T TIGR03534         1 DAELLLAHVLGKDRTDLLL----H-PEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEE   75 (251)
T ss_pred             CHHHHHHHHHCcCHHHHhh----c-ccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHH
Confidence            4689999999997654321    1 1223445555566666677789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++.+++.+ ..    .+.+|||+|||+|++++.++..+ ++.+|+|+|+|+.+++.|++|++.
T Consensus        76 l~~~~l~~~-~~----~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~  133 (251)
T TIGR03534        76 LVEAALERL-KK----GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR  133 (251)
T ss_pred             HHHHHHHhc-cc----CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            999988876 21    23579999999999999999985 778999999999999999999864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02672 methionine S-methyltransferase

Probab=99.68  E-value=1.6e-16  Score=164.52  Aligned_cols=87  Identities=25%  Similarity=0.296  Sum_probs=74.2

Q ss_pred             eeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026108          153 VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA  232 (243)
Q Consensus       153 ~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~A  232 (243)
                      .|.++|++++|.|+|+||||||+||.+++. +... . ....++.+|||||||||+|++.+++++ ++++|+|+|+|++|
T Consensus        79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~-~-~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~A  154 (1082)
T PLN02672         79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRH-P-DSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRA  154 (1082)
T ss_pred             CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhc-c-cccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHH
Confidence            478899999999999999999999999998 4332 1 111134579999999999999999986 77899999999999


Q ss_pred             HHHHHHHHHhC
Q 026108          233 AAVAAFNAQRI  243 (243)
Q Consensus       233 L~~Ar~Na~~~  243 (243)
                      +++|++|+++|
T Consensus       155 l~~A~~Na~~n  165 (1082)
T PLN02672        155 VKVAWINLYLN  165 (1082)
T ss_pred             HHHHHHHHHHc
Confidence            99999999863

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.39  E-value=1.1e-12  Score=109.79  Aligned_cols=74  Identities=36%  Similarity=0.539  Sum_probs=63.6

Q ss_pred             cccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       161 l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      ++|...++||.|+   +.|++|++.+...        +..+|||+|||+|++++.+++.. ++.+|+++|+|+.|++.|+
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~   72 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAK   72 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHH
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHH
Confidence            5688899999965   6788888876542        24579999999999999999985 8889999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +|++.|
T Consensus        73 ~n~~~n   78 (170)
T PF05175_consen   73 RNAERN   78 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999875

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=6.4e-12  Score=114.62  Aligned_cols=102  Identities=27%  Similarity=0.534  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHhhhcCCCcee---EEeeeccccc-------cccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCC
Q 026108          131 GLDELYGLWKQRIEKRKPFQ---YLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDG  197 (243)
Q Consensus       131 ~~~~~~~~~~~R~~~~~Pl~---yi~g~~~f~~-------l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~  197 (243)
                      ..++|...|++-+   .|+.   .++....|..       ..+.++||+-+-   +|.|.++++++.+.+ .     ++.
T Consensus        94 ~e~DW~~~wk~~~---~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~-~-----~g~  164 (300)
T COG2264          94 DEEDWEREWKKYF---HPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLL-K-----KGK  164 (300)
T ss_pred             ChHHHHHHHHhcC---CcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhh-c-----CCC
Confidence            3478888898655   5653   3444445542       336778888775   599999999988766 1     467


Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +|||+|||||.++|++++. |+ .+|+|+|++|.|++.|++|+++|
T Consensus       165 ~vlDvGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N  208 (300)
T COG2264         165 TVLDVGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLN  208 (300)
T ss_pred             EEEEecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHc
Confidence            8999999999999999984 54 58999999999999999999876

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.29  E-value=8.4e-12  Score=113.93  Aligned_cols=102  Identities=29%  Similarity=0.569  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHhhhcCCCcee---EEeeeccccc-------cccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCC
Q 026108          131 GLDELYGLWKQRIEKRKPFQ---YLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDG  197 (243)
Q Consensus       131 ~~~~~~~~~~~R~~~~~Pl~---yi~g~~~f~~-------l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~  197 (243)
                      +.++|.+.|++.+   +|+.   .++-...|..       ..+.++|++-+-   +|.|.++++.+.+.. .     ++.
T Consensus        93 ~~~dW~~~Wk~~~---~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~-~-----~g~  163 (295)
T PF06325_consen   93 EEEDWEEAWKKYF---KPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV-K-----PGK  163 (295)
T ss_dssp             -HHCHHHHHHHH------EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS-S-----TTS
T ss_pred             ccccchHHHHhcC---ccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhc-c-----CCC
Confidence            5578999998776   5552   1222333322       346678887775   599999999887765 1     356


Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +|||+|||||.++|+.++. |. .+|+|+|+++.|++.|++|++.|
T Consensus       164 ~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~N  207 (295)
T PF06325_consen  164 RVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAELN  207 (295)
T ss_dssp             EEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHHT
T ss_pred             EEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHHc
Confidence            8999999999999999984 54 58999999999999999999876

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.29  E-value=2.2e-11  Score=116.38  Aligned_cols=91  Identities=23%  Similarity=0.164  Sum_probs=77.1

Q ss_pred             CCCceeEEeee--------ccccccccccCCCcccC--CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHH
Q 026108          145 KRKPFQYLVGC--------EHWRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA  214 (243)
Q Consensus       145 ~~~Pl~yi~g~--------~~f~~l~f~v~~~vliP--Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA  214 (243)
                      .++|.+|+.|.        .+|+|+.|.++++.|+.  +..+|.+++.+++++ .   ..++.+|||+|||+|.+++.+|
T Consensus       241 ~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l-~---~~~~~~VLDlgcGtG~~sl~la  316 (443)
T PRK13168        241 KGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWL-D---PQPGDRVLDLFCGLGNFTLPLA  316 (443)
T ss_pred             CCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHh-c---CCCCCEEEEEeccCCHHHHHHH
Confidence            46899999886        24778999999999985  467899999999887 2   1235689999999999999999


Q ss_pred             HHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          215 RVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       215 ~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..   .+|+|+|+|++|++.|++|++.
T Consensus       317 ~~~---~~V~gvD~s~~al~~A~~n~~~  341 (443)
T PRK13168        317 RQA---AEVVGVEGVEAMVERARENARR  341 (443)
T ss_pred             HhC---CEEEEEeCCHHHHHHHHHHHHH
Confidence            863   6999999999999999999875

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.24  E-value=6e-11  Score=102.58  Aligned_cols=92  Identities=18%  Similarity=0.248  Sum_probs=72.3

Q ss_pred             CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      .|.+.-||+|.. |+|+.+.+.++--. ||.++.+.+.++.++. .  ..++.+|||||||||++++.++.+. . .+|+
T Consensus         8 ~~~~~mrIi~g~-~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~-~--~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~   80 (199)
T PRK10909          8 SGSGQIRIIGGQ-WRGRKLPVPDSPGL-RPTTDRVRETLFNWLA-P--VIVDARCLDCFAGSGALGLEALSRY-A-AGAT   80 (199)
T ss_pred             CCCCCEEEEeec-cCCCEeCCCCCCCc-CcCCHHHHHHHHHHHh-h--hcCCCEEEEcCCCccHHHHHHHHcC-C-CEEE
Confidence            344556898886 68999988554322 9999999999998872 1  1235689999999999999755542 3 6999


Q ss_pred             EEeCCHHHHHHHHHHHHhC
Q 026108          225 AVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++|+++++++.|++|++.+
T Consensus        81 ~vE~~~~a~~~a~~Nl~~~   99 (199)
T PRK10909         81 LLEMDRAVAQQLIKNLATL   99 (199)
T ss_pred             EEECCHHHHHHHHHHHHHh
Confidence            9999999999999998753

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.18  E-value=2.6e-11  Score=116.24  Aligned_cols=79  Identities=22%  Similarity=0.203  Sum_probs=68.1

Q ss_pred             eeE----EeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          149 FQY----LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       149 l~y----i~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      ++|    |+|...|+|.+|.+.++++    +|+.+++.+.  +      .++.+|||+|||+|++++.+++.+  +.+|+
T Consensus       228 ~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~--~------~~~~~vLDiGcG~G~~~~~la~~~--~~~v~  293 (475)
T PLN02336        228 VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD--L------KPGQKVLDVGCGIGGGDFYMAENF--DVHVV  293 (475)
T ss_pred             hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC--C------CCCCEEEEEeccCCHHHHHHHHhc--CCEEE
Confidence            999    9999999999999999987    6777776542  1      134689999999999999999874  57999


Q ss_pred             EEeCCHHHHHHHHHHHH
Q 026108          225 AVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~  241 (243)
                      |+|+|+++++.|++|+.
T Consensus       294 gvDiS~~~l~~A~~~~~  310 (475)
T PLN02336        294 GIDLSVNMISFALERAI  310 (475)
T ss_pred             EEECCHHHHHHHHHHhh
Confidence            99999999999999874

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.14  E-value=2.2e-10  Score=105.74  Aligned_cols=85  Identities=20%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             cccccc-ccCCCcccCC-ccHHHHHHHHHHHhhhcC----CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          158 WRDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDN----DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       158 f~~l~f-~v~~~vliPR-p~TElLv~~v~~~l~~~~----~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      ++|+++ .+.++-|+|. |.---.+.++.+++....    +..++.++||||||+|+|...++.+. ++++++|+||++.
T Consensus        71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~  149 (321)
T PRK11727         71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQ  149 (321)
T ss_pred             hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHH
Confidence            357774 6889999997 766666777777652111    11235689999999999999998875 7899999999999


Q ss_pred             HHHHHHHHHHhC
Q 026108          232 AAAVAAFNAQRI  243 (243)
Q Consensus       232 AL~~Ar~Na~~~  243 (243)
                      |++.|++|++.|
T Consensus       150 Al~~A~~Nv~~N  161 (321)
T PRK11727        150 ALASAQAIISAN  161 (321)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.09  E-value=3.2e-10  Score=86.94  Aligned_cols=45  Identities=31%  Similarity=0.580  Sum_probs=41.9

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+|||||||+|.+++.+++.. ++++|+|+|+|+++++.|++|+.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~   46 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAA   46 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHH
Confidence            5689999999999999999975 78999999999999999999983

...

>PRK14967 putative methyltransferase; Provisional

Probab=99.09  E-value=3.9e-10  Score=98.13  Aligned_cols=78  Identities=33%  Similarity=0.357  Sum_probs=64.6

Q ss_pred             ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      +-++.+.+.++++.|..+++++.+.+...-     ..++.+|||+|||+|.+++.+++. + ..+|+++|+|+.+++.|+
T Consensus         4 ~~~~~~~~~~g~~~p~~ds~~l~~~l~~~~-----~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~   76 (223)
T PRK14967          4 TPPDALLRAPGVYRPQEDTQLLADALAAEG-----LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSAR   76 (223)
T ss_pred             CCCceeecCCCCcCCCCcHHHHHHHHHhcc-----cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHH
Confidence            346788999999999999999888765421     123468999999999999999985 2 359999999999999999


Q ss_pred             HHHHh
Q 026108          238 FNAQR  242 (243)
Q Consensus       238 ~Na~~  242 (243)
                      +|++.
T Consensus        77 ~n~~~   81 (223)
T PRK14967         77 LNALL   81 (223)
T ss_pred             HHHHH
Confidence            99864

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.1e-10  Score=112.15  Aligned_cols=91  Identities=26%  Similarity=0.364  Sum_probs=77.7

Q ss_pred             CCceeEEeee----ccccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC
Q 026108          146 RKPFQYLVGC----EHWRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS  219 (243)
Q Consensus       146 ~~Pl~yi~g~----~~f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p  219 (243)
                      +.|++++-|+    ..+.|+.|.++++.|++-  +.+|.|...+-+|..    ...+..++|+|||||.|++++|+..  
T Consensus       332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~----l~~~k~llDv~CGTG~iglala~~~--  405 (534)
T KOG2187|consen  332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAG----LPADKTLLDVCCGTGTIGLALARGV--  405 (534)
T ss_pred             CCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhC----CCCCcEEEEEeecCCceehhhhccc--
Confidence            3677777664    467799999999999996  899999999999882    2234679999999999999999974  


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          220 KGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       220 ~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                       ..|+||+++++|++-|++||+.|
T Consensus       406 -~~ViGvEi~~~aV~dA~~nA~~N  428 (534)
T KOG2187|consen  406 -KRVIGVEISPDAVEDAEKNAQIN  428 (534)
T ss_pred             -cceeeeecChhhcchhhhcchhc
Confidence             79999999999999999999875

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.07  E-value=2.5e-10  Score=107.50  Aligned_cols=75  Identities=23%  Similarity=0.379  Sum_probs=61.3

Q ss_pred             ccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       160 ~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      ++.+...++||...   ..|+++.+.+..        ...++|||||||+|.+++.+++.. |+++|+++|+|+.|++.|
T Consensus       198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A  268 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS  268 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence            56777789999985   557777665321        123589999999999999999985 889999999999999999


Q ss_pred             HHHHHhC
Q 026108          237 AFNAQRI  243 (243)
Q Consensus       237 r~Na~~~  243 (243)
                      ++|++.|
T Consensus       269 ~~N~~~n  275 (378)
T PRK15001        269 RLNVETN  275 (378)
T ss_pred             HHHHHHc
Confidence            9998754

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.00  E-value=1.6e-09  Score=99.32  Aligned_cols=79  Identities=18%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             ccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108          158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (243)
Q Consensus       158 f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~  235 (243)
                      +.+..|.+.++.|++.  ..++.+.+.+.+++ ..   .++.+|||+|||+|.+++.+|+.   +.+|+|+|+|+.|++.
T Consensus       138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l-~~---~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~  210 (315)
T PRK03522        138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWV-RE---LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIAC  210 (315)
T ss_pred             ECCEEEEECCCeeeecCHHHHHHHHHHHHHHH-Hh---cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence            4567899999999886  45677888888877 21   13468999999999999999985   3799999999999999


Q ss_pred             HHHHHHhC
Q 026108          236 AAFNAQRI  243 (243)
Q Consensus       236 Ar~Na~~~  243 (243)
                      |++|++.+
T Consensus       211 A~~n~~~~  218 (315)
T PRK03522        211 AKQSAAEL  218 (315)
T ss_pred             HHHHHHHc
Confidence            99999753

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.00  E-value=2.3e-09  Score=95.07  Aligned_cols=105  Identities=26%  Similarity=0.428  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHhhhcCCCceeEEeeeccccc------cccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCCcEEE
Q 026108          131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRD------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVD  201 (243)
Q Consensus       131 ~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~------l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~rVLD  201 (243)
                      +.++|.+.|++.+..-+--..+.-...|..      ..+.++|++-+.   ++.|..+++.+....      .++.+|||
T Consensus        52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~------~~~~~VLD  125 (250)
T PRK00517         52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLV------LPGKTVLD  125 (250)
T ss_pred             CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhc------CCCCEEEE
Confidence            446888999877632111112333333432      234455655443   367777776665433      14568999


Q ss_pred             eccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       202 LGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +|||+|.+++.+++. ++ .+|+|+|+|+.+++.|++|++.+
T Consensus       126 iGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~  165 (250)
T PRK00517        126 VGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELN  165 (250)
T ss_pred             eCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHc
Confidence            999999999988774 44 47999999999999999998754

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.99  E-value=2.9e-09  Score=96.50  Aligned_cols=102  Identities=28%  Similarity=0.579  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHhhhcCCCceeE---Eeeecccc-------ccccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCC
Q 026108          131 GLDELYGLWKQRIEKRKPFQY---LVGCEHWR-------DLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDG  197 (243)
Q Consensus       131 ~~~~~~~~~~~R~~~~~Pl~y---i~g~~~f~-------~l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~  197 (243)
                      ..++|.+.|++..   .|+.+   ++-...|.       ...+.++|+..+.   +|.|.+..+.+....      .++.
T Consensus        91 ~~~dW~~~w~~~~---~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~------~~g~  161 (288)
T TIGR00406        91 FSKDWERAWKDNF---HPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD------LKDK  161 (288)
T ss_pred             chhhHHHHHHHhC---CCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhc------CCCC
Confidence            3578999999776   44432   22223332       2346678888764   477777766654433      1356


Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +|||+|||+|.+++.+++. + ..+|+|+|+|+.|++.|++|++.+
T Consensus       162 ~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n  205 (288)
T TIGR00406       162 NVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELN  205 (288)
T ss_pred             EEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHc
Confidence            8999999999999998874 3 369999999999999999998753

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.99  E-value=1.8e-09  Score=102.66  Aligned_cols=91  Identities=21%  Similarity=0.248  Sum_probs=71.6

Q ss_pred             CCceeEEeeecc----ccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC
Q 026108          146 RKPFQYLVGCEH----WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS  219 (243)
Q Consensus       146 ~~Pl~yi~g~~~----f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p  219 (243)
                      +++...+.|+..    +.+..|.++++.|++.  ..++.+++.+.+++ .   ..++.+|||+|||+|.+++.+|+..  
T Consensus       241 g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l-~---~~~~~~vLDl~cG~G~~sl~la~~~--  314 (431)
T TIGR00479       241 GEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEAL-E---LQGEELVVDAYCGVGTFTLPLAKQA--  314 (431)
T ss_pred             CCceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHh-c---cCCCCEEEEcCCCcCHHHHHHHHhC--
Confidence            345566666543    3377899999999974  56777888888776 2   1234689999999999999999863  


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          220 KGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       220 ~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                       .+|+|+|+|+.|++.|++|++.+
T Consensus       315 -~~V~~vE~~~~av~~a~~n~~~~  337 (431)
T TIGR00479       315 -KSVVGIEVVPESVEKAQQNAELN  337 (431)
T ss_pred             -CEEEEEEcCHHHHHHHHHHHHHh
Confidence             59999999999999999998753

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=9.8e-10  Score=100.18  Aligned_cols=75  Identities=24%  Similarity=0.341  Sum_probs=63.2

Q ss_pred             ccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       160 ~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      ++.|...|+||.-.   ..|++|++.+...        .+.+|||+|||.|.||+.+|+.. |+.+|+.+|+|..||+.|
T Consensus       128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~a  198 (300)
T COG2813         128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESA  198 (300)
T ss_pred             ceEEEeCCCCCcCCCcChHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHH
Confidence            56788899999964   7788887765331        23479999999999999999985 899999999999999999


Q ss_pred             HHHHHhC
Q 026108          237 AFNAQRI  243 (243)
Q Consensus       237 r~Na~~~  243 (243)
                      |+|++.|
T Consensus       199 r~Nl~~N  205 (300)
T COG2813         199 RKNLAAN  205 (300)
T ss_pred             HHhHHHc
Confidence            9999865

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.99  E-value=1.7e-09  Score=90.70  Aligned_cols=63  Identities=25%  Similarity=0.394  Sum_probs=51.9

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |++||+++-+|.+.+. ..       ++.+|||+|||+|.+++.++... +  +|+++|+|+++++.|++|++.
T Consensus         1 ~~~~~~d~~~l~~~l~-~~-------~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~   63 (179)
T TIGR00537         1 VYEPAEDSLLLEANLR-EL-------KPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKL   63 (179)
T ss_pred             CCCCCccHHHHHHHHH-hc-------CCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHH
Confidence            6899999977666542 22       34579999999999999999862 3  999999999999999999864

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.98  E-value=2e-09  Score=99.14  Aligned_cols=81  Identities=22%  Similarity=0.141  Sum_probs=65.6

Q ss_pred             ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      +++....+....+.+++.++.+++.+++++ ......++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|+
T Consensus       108 iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l-~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~  183 (315)
T PLN02585        108 IYGETDEVNKVQLDIRLGHAQTVEKVLLWL-AEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAE  183 (315)
T ss_pred             hcCCccccCceeeecccChHHHHHHHHHHH-HhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHH
Confidence            355556677778888999988899888887 3221234578999999999999999985   479999999999999999


Q ss_pred             HHHHh
Q 026108          238 FNAQR  242 (243)
Q Consensus       238 ~Na~~  242 (243)
                      +|++.
T Consensus       184 ~~~~~  188 (315)
T PLN02585        184 RRAKE  188 (315)
T ss_pred             HHHHh
Confidence            99753

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.97  E-value=3.2e-09  Score=90.91  Aligned_cols=86  Identities=17%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             EEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       151 yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      .|+|. .|.|..+.+.++.. -||.+..+.+.+..++. .  ..++.++||||||||.+++.++.+ |+ .+|++||+++
T Consensus        10 rIi~G-~~kg~~l~~p~~~~-~rpt~~~vrea~f~~l~-~--~~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~   82 (189)
T TIGR00095        10 IIIGG-WRGGRLLKLPPGGS-TRPTTRVVRELFFNILR-P--EIQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDR   82 (189)
T ss_pred             EEEeh-hhCCcccCCCCCCC-CCCchHHHHHHHHHHHH-H--hcCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCH
Confidence            45553 46678887766654 47999999888888772 1  234678999999999999999997 44 5899999999


Q ss_pred             HHHHHHHHHHHhC
Q 026108          231 LAAAVAAFNAQRI  243 (243)
Q Consensus       231 ~AL~~Ar~Na~~~  243 (243)
                      .|++.+++|++.+
T Consensus        83 ~a~~~~~~N~~~~   95 (189)
T TIGR00095        83 KANQTLKENLALL   95 (189)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998753

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.96  E-value=1.7e-09  Score=91.88  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+.+.+.+.+ .......+.+|||+|||+|.+++.+|... ++++|+|+|+|+++++.+++|+++
T Consensus        25 ~~~~~~~~d~i-~~~~~~~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~   88 (181)
T TIGR00138        25 EIWERHILDSL-KLLEYLDGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAE   88 (181)
T ss_pred             HHHHHHHHHHH-HHHHhcCCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH
Confidence            55555554433 11112246789999999999999999864 778999999999999999999875

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.96  E-value=1.7e-09  Score=93.61  Aligned_cols=86  Identities=19%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             EEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhc-CCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCC
Q 026108          151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN  229 (243)
Q Consensus       151 yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~-~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS  229 (243)
                      |+++...||+-+|   -..+++|..++.++...+.++... ....++.+|||+|||+|.++..++..+ ++.+|+|+|+|
T Consensus         1 ~~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS   76 (204)
T TIGR03587         1 MKTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEIN   76 (204)
T ss_pred             CcchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECC
Confidence            3566677777776   233888876776555444433110 011234679999999999999999875 67899999999


Q ss_pred             HHHHHHHHHHH
Q 026108          230 PLAAAVAAFNA  240 (243)
Q Consensus       230 ~~AL~~Ar~Na  240 (243)
                      ++|++.|++|.
T Consensus        77 ~~~l~~A~~~~   87 (204)
T TIGR03587        77 EYAVEKAKAYL   87 (204)
T ss_pred             HHHHHHHHhhC
Confidence            99999999874

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.94  E-value=3.2e-09  Score=99.66  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=63.3

Q ss_pred             ccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108          158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (243)
Q Consensus       158 f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~  235 (243)
                      +.|..|.++++.|++-  ...+.+.+.+.+++ ..   ..+.+|||||||+|.+++.+|..   +.+|+|||+|+.|++.
T Consensus       198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l-~~---~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~  270 (374)
T TIGR02085       198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWV-RE---IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIAC  270 (374)
T ss_pred             ECCEEEEECCCccccCCHHHHHHHHHHHHHHH-Hh---cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHH
Confidence            4467899999999874  55666677776665 21   13457999999999999999974   3799999999999999


Q ss_pred             HHHHHHhC
Q 026108          236 AAFNAQRI  243 (243)
Q Consensus       236 Ar~Na~~~  243 (243)
                      |++|++.+
T Consensus       271 a~~N~~~~  278 (374)
T TIGR02085       271 AQQSAQML  278 (374)
T ss_pred             HHHHHHHc
Confidence            99999753

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.91  E-value=3.1e-09  Score=98.91  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=60.9

Q ss_pred             ccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       160 ~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      ++.+...++||.+.   +.|+++.+.+...        ..++|||+|||+|.+++.+++.. |+.+|+++|+|+.|++.|
T Consensus       166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A  236 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESS  236 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence            45677889999974   5677776654321        23479999999999999999985 788999999999999999


Q ss_pred             HHHHHhC
Q 026108          237 AFNAQRI  243 (243)
Q Consensus       237 r~Na~~~  243 (243)
                      ++|++++
T Consensus       237 ~~nl~~n  243 (342)
T PRK09489        237 RATLAAN  243 (342)
T ss_pred             HHHHHHc
Confidence            9998764

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.90  E-value=4.1e-09  Score=85.99  Aligned_cols=48  Identities=29%  Similarity=0.412  Sum_probs=41.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.++.+.+++.+|+|+|+|+++++.|++++++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~   50 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE   50 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc
Confidence            356899999999999999996555789999999999999999998764

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.90  E-value=7.1e-09  Score=87.57  Aligned_cols=61  Identities=28%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+...++..+ .   ..++.+|||+|||+|.+++.+++.. ++.+|+++|+|+.+++.|++|+++
T Consensus        17 ~~~r~~~~~~l-~---~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~   77 (187)
T PRK08287         17 EEVRALALSKL-E---LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQR   77 (187)
T ss_pred             HHHHHHHHHhc-C---CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            33444455544 1   1245689999999999999999985 788999999999999999999875

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.89  E-value=6.9e-09  Score=88.89  Aligned_cols=47  Identities=21%  Similarity=0.141  Sum_probs=43.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +.+|||+|||+|.+++.+|+.. ++++|+|+|+|+++++.|++|++.+
T Consensus        46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~   92 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAEL   92 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHc
Confidence            5789999999999999999875 7899999999999999999998753

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=7.6e-09  Score=88.78  Aligned_cols=49  Identities=39%  Similarity=0.637  Sum_probs=43.5

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +...+..|+|||||+|.+++.++.. |+ ..|+|||++++|++++++|+.+
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~   90 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEE   90 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHh
Confidence            4556678999999999999999985 66 6999999999999999999974

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.85  E-value=7.3e-09  Score=92.45  Aligned_cols=74  Identities=23%  Similarity=0.319  Sum_probs=59.3

Q ss_pred             cccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          161 LVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       161 l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..+..++.++-+..|+-+|..++..        ...++|||||||+|++++++|++. ++++|+|||+++++.+.|++|+
T Consensus        18 ~~I~q~~~~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv   88 (248)
T COG4123          18 FFIIQDRCGFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNV   88 (248)
T ss_pred             eEEEeCCCccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHH
Confidence            3445566777777787777665422        125789999999999999999986 6699999999999999999999


Q ss_pred             HhC
Q 026108          241 QRI  243 (243)
Q Consensus       241 ~~~  243 (243)
                      +.+
T Consensus        89 ~ln   91 (248)
T COG4123          89 ALN   91 (248)
T ss_pred             HhC
Confidence            763

>PRK14968 putative methyltransferase; Provisional

Probab=98.85  E-value=1.1e-08  Score=85.04  Aligned_cols=66  Identities=30%  Similarity=0.482  Sum_probs=56.3

Q ss_pred             CCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       166 ~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++++.|+.++.++.+.+..        .++.+|||+|||+|.+++.++..   +.+|+|+|+|+++++.|++|++.
T Consensus         2 ~~~~~~p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~   67 (188)
T PRK14968          2 NDEVYEPAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKL   67 (188)
T ss_pred             CCcccCcchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHH
Confidence            57899999999988876542        13467999999999999999986   37999999999999999999854

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.7e-08  Score=96.68  Aligned_cols=77  Identities=18%  Similarity=0.222  Sum_probs=65.8

Q ss_pred             ccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          160 DLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       160 ~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      +..|.+.++.|++-  ..+|.|.+.+.+|+ ..   .++.++|||.||.|.+++.||+..   .+|+|||++++|++.|+
T Consensus       260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~-~~---~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~  332 (432)
T COG2265         260 GVSFQISPRSFFQVNPAVAEKLYETALEWL-EL---AGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQ  332 (432)
T ss_pred             ceEEEeCCCCceecCHHHHHHHHHHHHHHH-hh---cCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHH
Confidence            46777888888874  78888999999998 22   234689999999999999999763   79999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +||+.|
T Consensus       333 ~NA~~n  338 (432)
T COG2265         333 ENAAAN  338 (432)
T ss_pred             HHHHHc
Confidence            999875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.83  E-value=2.2e-08  Score=77.46  Aligned_cols=46  Identities=37%  Similarity=0.590  Sum_probs=42.1

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|.+++.+++++ ++.+|+++|+|+.+++.|++|++.
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~   65 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARR   65 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHH
Confidence            4589999999999999999986 668999999999999999999865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.81  E-value=5.7e-09  Score=97.35  Aligned_cols=76  Identities=22%  Similarity=0.265  Sum_probs=60.1

Q ss_pred             ccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          160 DLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       160 ~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      ++.|.++++.|++-  ..++.+++.+.+++ ..    .+..+|||+||+|.+++.||..+   .+|+|||+++.|++.|+
T Consensus       164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l-~~----~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~  235 (352)
T PF05958_consen  164 GLSFRISPGSFFQVNPEQNEKLYEQALEWL-DL----SKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDAR  235 (352)
T ss_dssp             TEEEEEETTS---SBHHHHHHHHHHHHHHC-TT-----TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHH
T ss_pred             ceEEEECCCcCccCcHHHHHHHHHHHHHHh-hc----CCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHH
Confidence            46788899999985  78888999999988 21    12369999999999999999864   69999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +|++.|
T Consensus       236 ~Na~~N  241 (352)
T PF05958_consen  236 ENAKLN  241 (352)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999865

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.81  E-value=2.2e-08  Score=85.25  Aligned_cols=47  Identities=26%  Similarity=0.458  Sum_probs=42.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.. ++.+|+++|+|+++++.|++|+++
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            45689999999999999999864 778999999999999999999865

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.80  E-value=2.5e-08  Score=93.14  Aligned_cols=75  Identities=16%  Similarity=0.300  Sum_probs=61.5

Q ss_pred             cccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       161 l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +.|.++++.|.+-  ..++.+++.+.+++ ..    .+.+|||||||+|.+++.+++..   .+|+|||++++|++.|++
T Consensus       166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~-~~----~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~  237 (353)
T TIGR02143       166 FIYRQVENSFTQPNAAVNIKMLEWACEVT-QG----SKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQY  237 (353)
T ss_pred             EEEEECCCCcccCCHHHHHHHHHHHHHHh-hc----CCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHH
Confidence            6788889998853  45678888888876 21    12369999999999999999874   599999999999999999


Q ss_pred             HHHhC
Q 026108          239 NAQRI  243 (243)
Q Consensus       239 Na~~~  243 (243)
                      |++.+
T Consensus       238 n~~~~  242 (353)
T TIGR02143       238 NIAAN  242 (353)
T ss_pred             HHHHc
Confidence            99754

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.80  E-value=1.6e-08  Score=94.67  Aligned_cols=75  Identities=20%  Similarity=0.347  Sum_probs=62.6

Q ss_pred             cccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       161 l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +.|.++++.|++-  ..+|.+++.+.+++ ..    .+.++||||||+|.+++.+++..   .+|+|||+|+.|++.|++
T Consensus       175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~-~~----~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~  246 (362)
T PRK05031        175 FIYRQVENSFTQPNAAVNEKMLEWALDAT-KG----SKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQY  246 (362)
T ss_pred             EEEEeCCCCeeccCHHHHHHHHHHHHHHh-hc----CCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHH
Confidence            6788899999874  56888899888877 21    12469999999999999999863   599999999999999999


Q ss_pred             HHHhC
Q 026108          239 NAQRI  243 (243)
Q Consensus       239 Na~~~  243 (243)
                      |++.+
T Consensus       247 N~~~~  251 (362)
T PRK05031        247 NIAAN  251 (362)
T ss_pred             HHHHh
Confidence            98753

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.77  E-value=4.5e-08  Score=84.32  Aligned_cols=60  Identities=27%  Similarity=0.344  Sum_probs=47.7

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..+.+.+ .   ..++.+|||+|||+|.++..+++..++.++|+++|+++++++.|++|+++
T Consensus        60 ~~~~~~~~l-~---~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~  119 (205)
T PRK13944         60 MVAMMCELI-E---PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER  119 (205)
T ss_pred             HHHHHHHhc-C---CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            445555544 1   22456899999999999999998764467999999999999999999865

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.77  E-value=3.6e-08  Score=85.27  Aligned_cols=60  Identities=25%  Similarity=0.381  Sum_probs=48.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..+++++ .   ..++.+|||+|||+|.+++.+|+..+++.+|+++|+++++++.|++|+++
T Consensus        65 ~~~~~~~~l-~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~  124 (215)
T TIGR00080        65 MVAMMTELL-E---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK  124 (215)
T ss_pred             HHHHHHHHh-C---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            445555555 1   22457899999999999999999864456899999999999999999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.76  E-value=2.1e-08  Score=85.59  Aligned_cols=81  Identities=23%  Similarity=0.334  Sum_probs=60.0

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|.|..+...++. .-||.+..+-+.+.+++. .. ...+.++|||+||||++|+.++.+ |. .+|+.||.++.|++..
T Consensus         7 ~~kgr~l~~p~~~-~~RPT~drvrealFniL~-~~-~~~g~~vLDLFaGSGalGlEALSR-GA-~~v~fVE~~~~a~~~i   81 (183)
T PF03602_consen    7 KYKGRKLKTPKGD-NTRPTTDRVREALFNILQ-PR-NLEGARVLDLFAGSGALGLEALSR-GA-KSVVFVEKNRKAIKII   81 (183)
T ss_dssp             TTTT-EEE-TT---TS-SSSHHHHHHHHHHHH-CH--HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHH
T ss_pred             ecCCCEecCCCCC-CcCCCcHHHHHHHHHHhc-cc-ccCCCeEEEcCCccCccHHHHHhc-CC-CeEEEEECCHHHHHHH
Confidence            4567777766653 348999999999999983 21 146789999999999999998887 44 6999999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|++.
T Consensus        82 ~~N~~~   87 (183)
T PF03602_consen   82 KKNLEK   87 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999974

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.72  E-value=6.8e-08  Score=82.56  Aligned_cols=48  Identities=25%  Similarity=0.529  Sum_probs=43.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+|+..++..+|+++|+++++++.|++|++.
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~   87 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK   87 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            567899999999999999998765667999999999999999999875

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.70  E-value=3.5e-08  Score=76.17  Aligned_cols=44  Identities=32%  Similarity=0.469  Sum_probs=40.4

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+|||+|||+|.+++.+++. + ..+++|+|+++.+++.|++|+..
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~   45 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPR   45 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHH
T ss_pred             CEEEEcCcchHHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHH
Confidence            47999999999999999997 3 58999999999999999999875

...

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.68  E-value=8.3e-08  Score=83.25  Aligned_cols=76  Identities=25%  Similarity=0.337  Sum_probs=54.5

Q ss_pred             ccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       160 ~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +..+.+..+..+-.|   .++..+++.+ .   ..++.+|||+|||+|.++..+++..+++++|+++|+++++++.|++|
T Consensus        48 d~~~~~~~g~~~~~p---~~~~~~~~~l-~---~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~  120 (212)
T PRK13942         48 DTPLEIGYGQTISAI---HMVAIMCELL-D---LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT  120 (212)
T ss_pred             CCCccCCCCCEeCcH---HHHHHHHHHc-C---CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence            444444444433222   2344444444 1   22457899999999999999998765567999999999999999999


Q ss_pred             HHh
Q 026108          240 AQR  242 (243)
Q Consensus       240 a~~  242 (243)
                      ++.
T Consensus       121 l~~  123 (212)
T PRK13942        121 LKK  123 (212)
T ss_pred             HHH
Confidence            874

>TIGR00740 methyltransferase, putative

Probab=98.67  E-value=7.9e-08  Score=84.18  Aligned_cols=48  Identities=21%  Similarity=0.219  Sum_probs=41.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~-~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+++.+ .|+++|+|+|+|+.+++.|++|++.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~  101 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA  101 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence            35689999999999999999864 2578999999999999999998753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.65  E-value=1.4e-07  Score=81.74  Aligned_cols=48  Identities=19%  Similarity=0.331  Sum_probs=42.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.++++.+|+|+|+|+.+++.|++|++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~   92 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD   92 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            456899999999999999998765678999999999999999998753

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.2e-07  Score=81.13  Aligned_cols=76  Identities=25%  Similarity=0.395  Sum_probs=62.2

Q ss_pred             CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+|+-|--||-+|++.+..-. .........-++|||||||++.-.|++..++++...++||++.|++..++.++.|
T Consensus        16 ~dVYEPaEDTFlLlDaLekd~-~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n   91 (209)
T KOG3191|consen   16 SDVYEPAEDTFLLLDALEKDA-AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN   91 (209)
T ss_pred             hhccCccchhhHHHHHHHHHH-HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc
Confidence            388999999999999876644 2212222456999999999999999999888899999999999999988887654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.63  E-value=1e-07  Score=84.26  Aligned_cols=48  Identities=23%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~-~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+++.+ .++++|+|+|+|+.+++.|++|++.
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~  104 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA  104 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence            35689999999999999988742 3678999999999999999999864

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.63  E-value=1.8e-07  Score=80.23  Aligned_cols=49  Identities=31%  Similarity=0.434  Sum_probs=44.8

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .++.+++|+|||||.+++.+|.. +|..+|+|+|.++++++..++|++++
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~f   81 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARF   81 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHh
Confidence            35678999999999999999965 69999999999999999999999874

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.61  E-value=2.8e-07  Score=79.08  Aligned_cols=86  Identities=20%  Similarity=0.330  Sum_probs=70.7

Q ss_pred             EEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       151 yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      +|+|. .|.|..+.+.++-- -||.+..+-+.+.+|+. .. ...+.++|||++|||++|+..+.+ |. ..|+.||.+.
T Consensus         3 RIi~G-~~kgr~L~~p~~~~-~RPT~drVREalFNil~-~~-~i~g~~~LDlFAGSGaLGlEAlSR-GA-~~~~~vE~~~   76 (187)
T COG0742           3 RIIGG-KYKGRKLKTPDGPG-TRPTTDRVREALFNILA-PD-EIEGARVLDLFAGSGALGLEALSR-GA-ARVVFVEKDR   76 (187)
T ss_pred             EEEec-cccCCcccCCCCCC-cCCCchHHHHHHHHhcc-cc-ccCCCEEEEecCCccHhHHHHHhC-CC-ceEEEEecCH
Confidence            45554 46788888777633 38999999999999982 11 356889999999999999999997 44 7999999999


Q ss_pred             HHHHHHHHHHHh
Q 026108          231 LAAAVAAFNAQR  242 (243)
Q Consensus       231 ~AL~~Ar~Na~~  242 (243)
                      .|+...++|++.
T Consensus        77 ~a~~~l~~N~~~   88 (187)
T COG0742          77 KAVKILKENLKA   88 (187)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.60  E-value=9.1e-08  Score=82.34  Aligned_cols=47  Identities=13%  Similarity=0.271  Sum_probs=42.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+++++.|++|++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~   86 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEE   86 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHH
Confidence            34679999999999999999985 778999999999999999999864

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.59  E-value=2.1e-07  Score=83.26  Aligned_cols=46  Identities=30%  Similarity=0.419  Sum_probs=40.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.+++.+++.++++++|+|+|+|+++++.|+++.
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~  118 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQ  118 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence            3568999999999999999987656689999999999999998764

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.59  E-value=7.1e-08  Score=85.26  Aligned_cols=48  Identities=27%  Similarity=0.476  Sum_probs=37.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++..+++++|+|+|+|+++|++|+++++.
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~   94 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR   94 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh
Confidence            456899999999999999998876778999999999999999998753

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.59  E-value=8.7e-08  Score=86.62  Aligned_cols=44  Identities=27%  Similarity=0.295  Sum_probs=39.7

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++|||+|||+|..++.+|+.   +.+|+|+|+|+.|++.+++|++.
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHH
Confidence            458999999999999999985   47999999999999999999864

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.58  E-value=1.6e-07  Score=80.28  Aligned_cols=44  Identities=25%  Similarity=0.197  Sum_probs=39.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|.+++.+|+.   +.+|+|+|+|+.|++.++++++.
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~   74 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAR   74 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHH
Confidence            468999999999999999985   47999999999999999988753

Part of a tellurite-reducing operon tehA and tehB

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.56  E-value=1.1e-07  Score=81.10  Aligned_cols=46  Identities=15%  Similarity=0.355  Sum_probs=42.1

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..++||||||+|.+++.+|+.. |+.+|+|+|+++++++.|++|+++
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~   62 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK   62 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH
Confidence            3579999999999999999986 889999999999999999998764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.56  E-value=2.1e-07  Score=86.69  Aligned_cols=69  Identities=25%  Similarity=0.244  Sum_probs=53.6

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.|++.++.+.+.+++.. ..  ...+.+|||+|||+|.+++.+++.+ ++.+|+++|+|+++++.|++|..
T Consensus        90 ~~~~~~~~e~~r~~~l~~~-~l--~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~  158 (340)
T PLN02490         90 IINPGHWTEDMRDDALEPA-DL--SDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP  158 (340)
T ss_pred             CeecCcchHHHHHHHHhhc-cc--CCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh
Confidence            4556777777777666543 11  1134689999999999999999876 56899999999999999998753

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.55  E-value=1.4e-07  Score=71.72  Aligned_cols=43  Identities=30%  Similarity=0.535  Sum_probs=34.6

Q ss_pred             EEEeccCCcHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          199 WVDLGTGSGAIAIGIARVL--GSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       199 VLDLGtGSG~iai~LA~~~--~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      |||+|||+|.....+++.+  ++..+++|+|+|+++++.|+++..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~   45 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS   45 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch
Confidence            7999999999999999875  344799999999999999999874

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.53  E-value=2.2e-07  Score=85.04  Aligned_cols=83  Identities=27%  Similarity=0.370  Sum_probs=48.2

Q ss_pred             ccccc-ccCCCcccCC-ccHHHHHHHHHHHhhhcCCC-CCCCcEEEeccCCcHH-HHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDNDG-LRDGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       159 ~~l~f-~v~~~vliPR-p~TElLv~~v~~~l~~~~~~-~~~~rVLDLGtGSG~i-ai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      +|+++ .+.++-|+|. |.---.+.++.+.+...... ....++||+|||.-|| .+..++.+  +++++|+||++.+++
T Consensus        63 fgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~  140 (299)
T PF05971_consen   63 FGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLE  140 (299)
T ss_dssp             H--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHH
T ss_pred             cCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHH
Confidence            46766 7889999998 66555667777766222111 1245799999999999 45555554  799999999999999


Q ss_pred             HHHHHHHhC
Q 026108          235 VAAFNAQRI  243 (243)
Q Consensus       235 ~Ar~Na~~~  243 (243)
                      .|++|+++|
T Consensus       141 ~A~~nv~~N  149 (299)
T PF05971_consen  141 SARENVERN  149 (299)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999876

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.53  E-value=1.7e-07  Score=83.37  Aligned_cols=47  Identities=21%  Similarity=0.420  Sum_probs=42.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||||-+++.+++..+ .++|+|+|+|+.+|++|++.+..
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~   97 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK   97 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc
Confidence            567899999999999999999974 78999999999999999987653

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.53  E-value=3.4e-07  Score=79.05  Aligned_cols=61  Identities=28%  Similarity=0.332  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+-+.+.++.++ .. ...++.+|||+|||+|.++..++..   +.+|+|+|+|+++++.|++++.
T Consensus        38 ~~~~~~~~~~~l-~~-~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~   98 (219)
T TIGR02021        38 RAAMRRKLLDWL-PK-DPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQ   98 (219)
T ss_pred             HHHHHHHHHHHH-hc-CCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHH
Confidence            334556666666 21 1224678999999999999999875   3699999999999999999875

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PHA03411 putative methyltransferase; Provisional

Probab=98.53  E-value=3.9e-07  Score=82.64  Aligned_cols=44  Identities=25%  Similarity=0.322  Sum_probs=39.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..+|||+|||+|.+++.++++. +..+|+|+|+|+.+++.|++|.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~  108 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL  108 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC
Confidence            4579999999999999998874 4579999999999999999984

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.53  E-value=2.5e-07  Score=81.83  Aligned_cols=44  Identities=34%  Similarity=0.350  Sum_probs=39.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++.+|||+|||+|.++..++..+ |+.+|+|+|+|+.+++.|+++
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~   72 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER   72 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc
Confidence            45789999999999999999986 788999999999999999764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.52  E-value=2.1e-07  Score=79.73  Aligned_cols=45  Identities=27%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+|+.   +.+|+|+|+|++|++.|+++++.
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~   74 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAA   74 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHH
Confidence            3468999999999999999985   47999999999999999998754

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.50  E-value=4.7e-07  Score=79.93  Aligned_cols=48  Identities=21%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +++|||+|||+|+.++.+|...+++++|+++|+++++++.|++|++++
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~  116 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA  116 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            568999999999999999987655789999999999999999998753

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.48  E-value=2e-07  Score=82.71  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=40.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+.+|||+|||-|.++..+|+.   +++|+|+|+|++++++|+..+.+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e  103 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALE  103 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhh
Confidence            5678999999999999999995   48999999999999999987654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.48  E-value=4.2e-07  Score=80.16  Aligned_cols=46  Identities=24%  Similarity=0.281  Sum_probs=41.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++..+ ++.+|+|+|+|+.+++.|+++..
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~   76 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP   76 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC
Confidence            45689999999999999999986 77899999999999999998753

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.47  E-value=7.4e-07  Score=76.75  Aligned_cols=61  Identities=28%  Similarity=0.335  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ...+.+..++ ......++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++...
T Consensus        47 ~~~~~~~~~l-~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~  107 (230)
T PRK07580         47 RMRDTVLSWL-PADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPE  107 (230)
T ss_pred             HHHHHHHHHH-HhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHh
Confidence            3445555555 2211224568999999999999999985   35799999999999999998753

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.46  E-value=5.8e-07  Score=86.10  Aligned_cols=70  Identities=21%  Similarity=0.332  Sum_probs=52.3

Q ss_pred             CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+.+....++..++..+++       ..++.+|||+|||+|..++.+++..+++++|+|+|+++.+++.+++|++++
T Consensus       229 ~G~~~~qd~~s~lv~~~l~-------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~  298 (444)
T PRK14902        229 DGLITIQDESSMLVAPALD-------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL  298 (444)
T ss_pred             CceEEEEChHHHHHHHHhC-------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            4555554444444433332       123568999999999999999997655689999999999999999999763

>PRK08317 hypothetical protein; Provisional

Probab=98.45  E-value=9.5e-07  Score=75.43  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      |..+.+.+.+...+    ...++.+|||+|||+|.+++.++..++++.+|+|+|+|+.+++.|++|
T Consensus         2 ~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317          2 PDFRRYRARTFELL----AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             chHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            44455566666654    122456899999999999999999865678999999999999999988

>PLN02244 tocopherol O-methyltransferase

Probab=98.43  E-value=8.5e-07  Score=82.27  Aligned_cols=62  Identities=26%  Similarity=0.245  Sum_probs=47.1

Q ss_pred             HHHHHHHHhhhc-CCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~-~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++.+++++... ....++.+|||+|||+|.++..+++.+  +++|+|+|+|+.+++.|+++++.
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~  163 (340)
T PLN02244        101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAA  163 (340)
T ss_pred             HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHh
Confidence            455555554110 011345789999999999999999975  57999999999999999998754

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.43  E-value=9.4e-07  Score=81.79  Aligned_cols=48  Identities=27%  Similarity=0.455  Sum_probs=42.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++..+....|+++|+++++++.|++|+++
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~  127 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR  127 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            456899999999999999999763345899999999999999999865

>TIGR03438 probable methyltransferase

Probab=98.43  E-value=6.2e-07  Score=81.80  Aligned_cols=65  Identities=17%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHH
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p-~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      |.+.++|.+.+..+. ..-+  ++.+|||||||+|..+..|+..+ + +.+|+|+|+|+++|+.|++++.
T Consensus        44 r~E~~il~~~~~~ia-~~~~--~~~~iLELGcGtG~~t~~Ll~~l-~~~~~~~~iDiS~~mL~~a~~~l~  109 (301)
T TIGR03438        44 RTEAAILERHADEIA-AATG--AGCELVELGSGSSRKTRLLLDAL-RQPARYVPIDISADALKESAAALA  109 (301)
T ss_pred             HHHHHHHHHHHHHHH-HhhC--CCCeEEecCCCcchhHHHHHHhh-ccCCeEEEEECCHHHHHHHHHHHH
Confidence            567777766665554 2111  34679999999999999999886 4 5799999999999999999864

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PHA03412 putative methyltransferase; Provisional

Probab=98.43  E-value=2.8e-07  Score=81.99  Aligned_cols=46  Identities=22%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~--p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+|||+|||||+++++++++..  +..+|+|||+++.|++.|++|..
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~   97 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP   97 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence            46899999999999999998631  24699999999999999999963

>PRK06202 hypothetical protein; Provisional

Probab=98.41  E-value=4.3e-07  Score=79.17  Aligned_cols=47  Identities=36%  Similarity=0.511  Sum_probs=39.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~---~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+++..   +++.+|+|+|+|+++++.|+++..
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~  109 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR  109 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence            34689999999999999988642   345799999999999999998753

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.41  E-value=6.1e-07  Score=79.94  Aligned_cols=48  Identities=35%  Similarity=0.482  Sum_probs=42.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+++..++..+|+|+|+|+.+++.|++|++.
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~  124 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK  124 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH
Confidence            456899999999999988888766667999999999999999999754

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.41  E-value=1.2e-06  Score=77.63  Aligned_cols=45  Identities=29%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+.+|||+|||+|.+++.++..   +.+|+|+|+|+++++.|++|++.
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~   88 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEA   88 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHh
Confidence            3468999999999999999985   37999999999999999998753

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.41  E-value=6.3e-07  Score=78.15  Aligned_cols=79  Identities=29%  Similarity=0.381  Sum_probs=56.2

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|.+..+.+..+..+..|.   ++..+++++ .   ..++.+|||+|||||+.+..||+..++...|++||+++..++.|
T Consensus        41 aY~d~~l~i~~~~~is~P~---~~a~~l~~L-~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A  113 (209)
T PF01135_consen   41 AYEDRPLPIGCGQTISAPS---MVARMLEAL-D---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERA  113 (209)
T ss_dssp             TTSSS-EEEETTEEE--HH---HHHHHHHHT-T---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHH
T ss_pred             CCCCCCeeecceeechHHH---HHHHHHHHH-h---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHH
Confidence            3345556556566555543   344555555 2   23567999999999999999999887777899999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|.+.
T Consensus       114 ~~~l~~  119 (209)
T PF01135_consen  114 RRNLAR  119 (209)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.40  E-value=1.3e-06  Score=75.12  Aligned_cols=45  Identities=20%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.++..+++..   .+|+++|+++++++.|++|+++
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~  122 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ  122 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH
Confidence            45789999999999999888863   4899999999999999999865

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.39  E-value=8.1e-07  Score=76.65  Aligned_cols=45  Identities=31%  Similarity=0.369  Sum_probs=37.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++++||||||.|..++.||+.   +..|+|+|+|+.|++.+++-+++
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~   74 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEE   74 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhh
Confidence            4678999999999999999995   58999999999999998876653

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.38  E-value=8.2e-07  Score=73.95  Aligned_cols=44  Identities=16%  Similarity=0.283  Sum_probs=39.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+.+|||+|||+|.++..++++   +.+|+|+|+++.+++.+++|+.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~   56 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFA   56 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhc
Confidence            3468999999999999999986   3699999999999999999874

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.38  E-value=8.5e-07  Score=77.37  Aligned_cols=41  Identities=12%  Similarity=-0.034  Sum_probs=36.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+|||+|||.|.-++.||.+   +.+|+|||+|+.|++.|.+
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~   74 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA   74 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH
Confidence            3568999999999999999985   5899999999999998643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.35  E-value=1.3e-06  Score=80.87  Aligned_cols=44  Identities=23%  Similarity=0.404  Sum_probs=38.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+|+.   +++|+|||+|+++++.|+++++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~  174 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHAD  174 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHH
Confidence            4568999999999999999863   5799999999999999998764

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.34  E-value=5.2e-07  Score=81.06  Aligned_cols=42  Identities=21%  Similarity=0.294  Sum_probs=38.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +.+|||+|||.|.+++.||+.   +++|+|||++++++++|++.+
T Consensus        90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~  131 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHK  131 (282)
T ss_pred             CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhh
Confidence            456999999999999999995   489999999999999999874

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.34  E-value=8.7e-07  Score=84.14  Aligned_cols=47  Identities=15%  Similarity=0.094  Sum_probs=40.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|.+++.++..  ...+|++||+|+.|++.|++|++.|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~N  266 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELN  266 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999987763  3359999999999999999999864

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.34  E-value=1.4e-06  Score=78.30  Aligned_cols=43  Identities=19%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..++.+.   .+|+|+|+|+++++.+++|.
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~   84 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETF   84 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhh
Confidence            45689999999999999999973   49999999999999999886

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.33  E-value=1.6e-06  Score=78.78  Aligned_cols=47  Identities=23%  Similarity=0.176  Sum_probs=42.6

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..++.+|||+|||-|.+++.+|+++  +.+|+|+++|++..+.|++.++
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~  116 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIA  116 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHH
Confidence            4467899999999999999999996  6899999999999999998665

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.31  E-value=3.3e-06  Score=79.79  Aligned_cols=45  Identities=20%  Similarity=0.176  Sum_probs=40.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.+++.+|+..  +.+|+|+|+|+++++.|++|++
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc
Confidence            45789999999999999999874  5799999999999999999874

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.31  E-value=1.1e-06  Score=77.15  Aligned_cols=44  Identities=34%  Similarity=0.351  Sum_probs=40.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ...+|.|||||.|..+-.|++++ |+++|+|+|-|++||+.|+..
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r   73 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR   73 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh
Confidence            34679999999999999999997 999999999999999999763

>PRK05785 hypothetical protein; Provisional

Probab=98.31  E-value=1e-06  Score=77.23  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=37.7

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +.+|||+|||+|.++..+++.+  +.+|+|+|+|+++++.|+++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc
Confidence            4689999999999999999874  47999999999999999875

>PRK04266 fibrillarin; Provisional

Probab=98.30  E-value=1.5e-06  Score=76.56  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=40.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.+++.++... +..+|+|+|+++.+++.+.++++
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~  117 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAE  117 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhh
Confidence            45689999999999999999986 46799999999999998877765

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.30  E-value=2e-06  Score=77.25  Aligned_cols=64  Identities=22%  Similarity=0.195  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHH
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~----iai~LA~~~~----p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +.+.+.+++.+.......++.+|+|+|||+|-    +++.++..+.    .+.+|+|+|+|+.||+.|++++
T Consensus        81 ~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       81 EALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             HHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            34555555543121112234689999999996    6777777642    1479999999999999999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.28  E-value=2.4e-06  Score=75.18  Aligned_cols=43  Identities=23%  Similarity=0.225  Sum_probs=37.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ...+|||+|||+|.++..++..   +.+|+|+|+|+++++.|++|.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC
Confidence            3467999999999999988864   479999999999999999875

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.28  E-value=2.1e-06  Score=76.89  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=43.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|..++.+|...+..+.|+|+|+++.+++.+++|++++
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~  119 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC  119 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence            4568999999999999999987644579999999999999999999764

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.28  E-value=1.8e-06  Score=63.18  Aligned_cols=41  Identities=22%  Similarity=0.389  Sum_probs=35.5

Q ss_pred             EEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       200 LDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ||+|||+|..+..+++.  ++.+|+++|+|+++++.++++...
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~   41 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN   41 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc
Confidence            79999999999999996  568999999999999999998653

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.27  E-value=1.8e-06  Score=82.80  Aligned_cols=72  Identities=19%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             ccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       164 ~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ...++.++....+..++-.++.       ..++.+|||+|||+|..++.++...+.+++|+|+|+|+.+++.+++|+++
T Consensus       226 ~~~~G~~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~  297 (445)
T PRK14904        226 FLKLGLVSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA  297 (445)
T ss_pred             HHhCcEEEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            3456666655444444433332       12456899999999999999998764457999999999999999999975

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.25  E-value=3.6e-06  Score=72.10  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=40.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..++... +..+|+++|+|+.+++.++++.
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~   78 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKL   78 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhc
Confidence            34689999999999999999985 7789999999999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.25  E-value=3.2e-06  Score=75.75  Aligned_cols=44  Identities=23%  Similarity=0.328  Sum_probs=37.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSK---GSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~---a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..+|||+|||+|.++..+++.+ +.   .+|+|+|+|+.|++.|+++.
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~-~~~~~~~v~giD~s~~~l~~A~~~~  132 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADAL-PEITTMQLFGLDISKVAIKYAAKRY  132 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhc-ccccCCeEEEECCCHHHHHHHHHhC
Confidence            4579999999999999998875 42   47999999999999998763

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.25  E-value=1.6e-06  Score=87.72  Aligned_cols=47  Identities=19%  Similarity=0.093  Sum_probs=41.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||||||+|.+++.+|+. | ..+|++||+|+.|++.|++|++.|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~n  584 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALN  584 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHh
Confidence            3568999999999999999985 3 347999999999999999999764

>PRK04148 hypothetical protein; Provisional

Probab=98.24  E-value=4e-06  Score=68.50  Aligned_cols=43  Identities=23%  Similarity=0.208  Sum_probs=37.3

Q ss_pred             CCCcEEEeccCCcH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~-iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+++|+|||+|. ++..|++.   +.+|+|+|+++.+++.|++|.
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~   59 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLG   59 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhC
Confidence            34689999999995 99999864   479999999999999998874

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.23  E-value=5.6e-06  Score=74.04  Aligned_cols=51  Identities=25%  Similarity=0.326  Sum_probs=43.6

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ..++.+||+-|||||+++.+||+..+|.++|+..|+.++..+.|++|++++
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~   88 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH   88 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence            346789999999999999999998889999999999999999999999864

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.23  E-value=4.2e-06  Score=79.14  Aligned_cols=46  Identities=22%  Similarity=0.098  Sum_probs=41.3

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+|||++||+|.+++.+|++. +..+|+++|+++.|++.+++|++.|
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N  104 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELN  104 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            479999999999999999985 3359999999999999999999764

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.22  E-value=7.1e-08  Score=72.79  Aligned_cols=41  Identities=22%  Similarity=0.358  Sum_probs=34.3

Q ss_pred             EEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       200 LDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ||+|||+|.++..++.++ +..+++|+|+|+.+++.|+++..
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~   41 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLA   41 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHH
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhh
Confidence            799999999999999986 88999999999999987776554

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.22  E-value=3.8e-06  Score=79.56  Aligned_cols=46  Identities=13%  Similarity=0.205  Sum_probs=42.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..+||||||+|.+.+.+|+.. |+..++|+|+++.+++.|.+++.+
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~  168 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL  168 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH
Confidence            4579999999999999999986 899999999999999999998865

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.21  E-value=4.9e-06  Score=75.58  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..+|||+|||+|.+++.+++++ |+.+|+++|. +.+++.|++|+++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~  194 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE  194 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHh
Confidence            34689999999999999999996 8899999998 7999999999864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.21  E-value=5.3e-06  Score=76.46  Aligned_cols=62  Identities=16%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..+.+...++.+. .   ..++.+|||+|||+|.+.+.++..   +.+|+|+|+++.+++.|++|+++
T Consensus       165 ~l~~~la~~~~~l~-~---~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~  226 (329)
T TIGR01177       165 SMDPKLARAMVNLA-R---VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEH  226 (329)
T ss_pred             CCCHHHHHHHHHHh-C---CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHH
Confidence            33444555555443 1   124568999999999999987763   47999999999999999999875

This family is found exclusively in the Archaea.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.21  E-value=3.4e-06  Score=80.57  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|..++.++... ++.+|+|+|+|+.+++.+++|++++
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~  291 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRL  291 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            46789999999999999999975 5579999999999999999999763

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.21  E-value=6.9e-06  Score=71.43  Aligned_cols=62  Identities=26%  Similarity=0.419  Sum_probs=50.9

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |++..+...+....       +.++||++|||+|+-++.+|..++++++|+.+|++++..++|++|+++
T Consensus        31 ~~~g~lL~~l~~~~-------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~   92 (205)
T PF01596_consen   31 PETGQLLQMLVRLT-------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK   92 (205)
T ss_dssp             HHHHHHHHHHHHHH-------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh
Confidence            45555556665544       346899999999999999999885679999999999999999999875

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.20  E-value=3.5e-06  Score=73.77  Aligned_cols=40  Identities=15%  Similarity=0.045  Sum_probs=35.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      ++.+|||+|||.|.-++.||.+   +.+|+|||+|+.|++.+.
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFF   76 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHH
Confidence            3568999999999999999985   589999999999999864

>PRK06922 hypothetical protein; Provisional

Probab=98.20  E-value=4.2e-06  Score=83.73  Aligned_cols=46  Identities=20%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|..+..++..+ |+.+|+|+|+|+.+++.|++|+.
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~  463 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQ  463 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhh
Confidence            45789999999999999999886 88999999999999999998864

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=2.2e-06  Score=71.21  Aligned_cols=49  Identities=24%  Similarity=0.420  Sum_probs=42.0

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..++.++|||||.|-+.++.+. + ....|+|+||+++||+.+++|++.
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm-~-~~e~vlGfDIdpeALEIf~rNaeE   93 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSM-P-KNESVLGFDIDPEALEIFTRNAEE   93 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhc-C-CCceEEeeecCHHHHHHHhhchHH
Confidence            345678899999999999987776 3 456999999999999999999975

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.18  E-value=4.3e-06  Score=80.15  Aligned_cols=48  Identities=23%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+|...+++++|+|+|+|+.+++.+++|+++
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r  284 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR  284 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            456899999999999999999765568999999999999999999876

>PLN02476 O-methyltransferase

Probab=98.18  E-value=7e-06  Score=74.61  Aligned_cols=63  Identities=17%  Similarity=0.315  Sum_probs=51.5

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .|++..+...+....       +.++|||+|||+|..++.+|...+++++|+++|+++++.+.|++|+++
T Consensus       103 ~~~~g~lL~~L~~~~-------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~  165 (278)
T PLN02476        103 SPDQAQLLAMLVQIL-------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL  165 (278)
T ss_pred             CHHHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            455555555555543       356899999999999999999775678999999999999999999975

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.18  E-value=5.8e-06  Score=74.05  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=39.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|..+..++..+  +.+|+|+|+|+.+++.|+++..
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~   96 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNS   96 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcC
Confidence            45689999999999999998864  5799999999999999998753

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=3.2e-06  Score=75.59  Aligned_cols=49  Identities=27%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .++.+|+|.|||||+++..||...++.++|+.+|+.++..+.|++|++.
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~  141 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE  141 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH
Confidence            3578999999999999999998888889999999999999999999975

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.16  E-value=9.6e-06  Score=69.64  Aligned_cols=47  Identities=26%  Similarity=0.452  Sum_probs=41.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|..+..++...+++.+|+++|+++.+++.|++|+.
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~   97 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR   97 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhc
Confidence            35689999999999999999985226899999999999999999864

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.16  E-value=6.4e-06  Score=78.59  Aligned_cols=48  Identities=15%  Similarity=0.218  Sum_probs=43.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|..++.++... ++++|+|+|+++.+++.+++|++++
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~  285 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRL  285 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHc
Confidence            45689999999999999999986 4689999999999999999999863

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.15  E-value=7.2e-06  Score=73.17  Aligned_cols=44  Identities=20%  Similarity=0.335  Sum_probs=39.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.+++.+++.   ..+|+|+|+++.+++.+++|++
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~   72 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEI   72 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhc
Confidence            4568999999999999999986   2699999999999999999864

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.14  E-value=6.7e-06  Score=71.37  Aligned_cols=75  Identities=27%  Similarity=0.342  Sum_probs=51.8

Q ss_pred             ccccccC--CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          160 DLVLSVE--EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       160 ~l~f~v~--~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      |..|.+|  .-.|.||-.+|..  .+.+.+      .++..|+|++||-|.+++.+|+. +....|+|+|++|.|++..+
T Consensus        72 G~~f~~D~~kvyfs~rl~~Er~--Ri~~~v------~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~  142 (200)
T PF02475_consen   72 GIRFKVDLSKVYFSPRLSTERR--RIANLV------KPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLK  142 (200)
T ss_dssp             TEEEEEETTTS---GGGHHHHH--HHHTC--------TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHH
T ss_pred             CEEEEEccceEEEccccHHHHH--HHHhcC------CcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHH
Confidence            5666654  4456688666653  333333      24568999999999999999995 35679999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +|++.|
T Consensus       143 ~Ni~lN  148 (200)
T PF02475_consen  143 ENIRLN  148 (200)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.14  E-value=1.5e-05  Score=72.21  Aligned_cols=48  Identities=21%  Similarity=0.160  Sum_probs=38.1

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..++.+|||||||.|.+++.+|+++  +++|+|+.+|++-.+.|++.+++
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~  107 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIRE  107 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHh
Confidence            4457899999999999999999997  58999999999999999988764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.13  E-value=7.1e-06  Score=69.13  Aligned_cols=68  Identities=16%  Similarity=0.255  Sum_probs=46.1

Q ss_pred             ccHHHHHHHHHHHhhh--cCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          174 PETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       174 p~TElLv~~v~~~l~~--~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      |-+..|.+++......  .....++.+||+||||+|..|+.+|+.. ...+|+++|.++ +++..+.|++.|
T Consensus        22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N   91 (173)
T PF10294_consen   22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELN   91 (173)
T ss_dssp             -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhc
Confidence            4555666666553100  1123356799999999999999999974 457999999999 999999999875

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.11  E-value=5.5e-06  Score=71.22  Aligned_cols=64  Identities=30%  Similarity=0.425  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhhhcCC-CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDND-GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~-~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+++++.+.+. ... .....+|||||||.|.+...|+++ +=....+|||.|+.|+++|+.-+++
T Consensus        49 ~riv~wl~d~~~-~~rv~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~  113 (227)
T KOG1271|consen   49 ERIVDWLKDLIV-ISRVSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAER  113 (227)
T ss_pred             HHHHHHHHhhhh-hhhhcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHh
Confidence            345666665542 111 112348999999999999999997 3445699999999999998877664

>PRK04457 spermidine synthase; Provisional

Probab=98.10  E-value=5.2e-06  Score=74.54  Aligned_cols=45  Identities=29%  Similarity=0.349  Sum_probs=41.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+|||||||+|.++..+++.+ |+.+|++||+++++++.|+++..
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~  111 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFE  111 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcC
Confidence            4679999999999999999986 88999999999999999999864

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.09  E-value=1.1e-05  Score=73.84  Aligned_cols=45  Identities=18%  Similarity=0.354  Sum_probs=39.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.++..++..   ..+|+|+|+|+++++.+++|++.
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~   80 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQN   80 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHh
Confidence            4568999999999999999886   26899999999999999998753

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.08  E-value=8.2e-06  Score=78.09  Aligned_cols=49  Identities=29%  Similarity=0.333  Sum_probs=43.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|..++.++...++.++|+|+|+++.+++.+++|++++
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~  300 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL  300 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence            4578999999999999999997645579999999999999999999763

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.07  E-value=1.7e-05  Score=67.30  Aligned_cols=66  Identities=24%  Similarity=0.208  Sum_probs=48.3

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHHHHh
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS---------IIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~---------V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |-+..+.+...++... .   ..++..++|-.||||.|.|..|... .+..         ++|+|+++++++.|++|++.
T Consensus         9 ~a~L~~~lA~~ll~la-~---~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~   83 (179)
T PF01170_consen    9 PAPLRPTLAAALLNLA-G---WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKA   83 (179)
T ss_dssp             STSS-HHHHHHHHHHT-T-----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHh-C---CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence            3455556666666554 1   1235679999999999999999875 5555         89999999999999999975

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.03  E-value=2.5e-05  Score=72.16  Aligned_cols=42  Identities=19%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      .++++|||+|||+|.+++.++.. ++ ..|+|+|.|+.++..++
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~  162 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFE  162 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHH
Confidence            35678999999999999999987 45 47999999999886544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=2.4e-05  Score=68.39  Aligned_cols=75  Identities=25%  Similarity=0.334  Sum_probs=56.6

Q ss_pred             ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      |.+..+-+..+..|-.|..   +-.+.+++    ...++.+||++|||||+.+..||+..   .+|+.+|+.++..+.|+
T Consensus        42 Y~d~~lpi~~gqtis~P~~---vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~  111 (209)
T COG2518          42 YEDRALPIGCGQTISAPHM---VARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQAR  111 (209)
T ss_pred             ccCCcccCCCCceecCcHH---HHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHH
Confidence            3455666667777755543   33344444    12256789999999999999999974   49999999999999999


Q ss_pred             HHHHh
Q 026108          238 FNAQR  242 (243)
Q Consensus       238 ~Na~~  242 (243)
                      +|.+.
T Consensus       112 ~~L~~  116 (209)
T COG2518         112 RNLET  116 (209)
T ss_pred             HHHHH
Confidence            99875

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.01  E-value=2e-05  Score=69.97  Aligned_cols=44  Identities=16%  Similarity=0.313  Sum_probs=38.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+++..   .+|+++|+++++++.+++|..
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~   72 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLS   72 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhC
Confidence            45689999999999999999974   469999999999999998863

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00452 methyltransferase, putative

Probab=98.01  E-value=2.2e-05  Score=72.47  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=35.4

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      .++++|||+|||+|.+++.++.. ++ ..|+|+|.|+.++..++
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~  161 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFE  161 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHH
Confidence            45678999999999999999886 34 48999999999987654

Known examples to date are restricted to the proteobacteria.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.96  E-value=3.5e-05  Score=67.85  Aligned_cols=62  Identities=23%  Similarity=0.307  Sum_probs=52.3

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |++-.+...+....       ..++||++||+.|.-++.+|..++.+++++.+|++++..+.|++|.++
T Consensus        45 ~e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~  106 (219)
T COG4122          45 PETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE  106 (219)
T ss_pred             hhHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            66666666665533       356899999999999999999984388999999999999999999875

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.96  E-value=5.9e-05  Score=68.85  Aligned_cols=47  Identities=21%  Similarity=0.173  Sum_probs=39.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++++|||++|-||.+++.++.. |. .+|+.||.|..|++.|++|++.|
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lN  169 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALN  169 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHT
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence            4578999999999999998874 32 48999999999999999999865

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.95  E-value=4e-05  Score=65.80  Aligned_cols=45  Identities=22%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+.+|||+|||+|.++..+++.   +.+|+++|+|+.+++.+++|+..
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~   89 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKK   89 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHH
Confidence            3568999999999999999875   35799999999999999998753

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN03075 nicotianamine synthase; Provisional

Probab=97.93  E-value=4.4e-05  Score=69.99  Aligned_cols=47  Identities=21%  Similarity=0.140  Sum_probs=37.6

Q ss_pred             CCCcEEEeccCCcHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~i-ai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+.+|+|+|||.|-+ ++.++....|+++++++|+|++|++.|+++++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~  170 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVS  170 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhh
Confidence            457899999997733 45444333488999999999999999999984

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.93  E-value=2.8e-05  Score=71.32  Aligned_cols=59  Identities=37%  Similarity=0.465  Sum_probs=47.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+.+++.+ .   ..++..++|.+||.|..+..+++.++++++|+|+|++++|++.|+++++
T Consensus         7 ll~Evl~~L-~---~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~   65 (296)
T PRK00050          7 LLDEVVDAL-A---IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK   65 (296)
T ss_pred             cHHHHHHhh-C---CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence            556666665 1   2245689999999999999999987447899999999999999998763

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.91  E-value=1.5e-05  Score=70.36  Aligned_cols=41  Identities=29%  Similarity=0.423  Sum_probs=36.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +..-|||+|||||..+-.|..   ++...+|+|||+.||++|.+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             CCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHH
Confidence            466899999999999988865   45899999999999999985

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.90  E-value=5e-05  Score=64.49  Aligned_cols=45  Identities=24%  Similarity=0.401  Sum_probs=40.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..+++.. +. .+++++|+++.+++.+++|.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~   84 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKS   84 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhc-CCCceEEEEECCHHHHHHHHHHh
Confidence            45789999999999999999986 54 69999999999999999875

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.89  E-value=4.5e-05  Score=61.27  Aligned_cols=38  Identities=21%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~  235 (243)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK   59 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh
Confidence            4678999999999999999775   3599999999999865

...

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.89  E-value=2.1e-05  Score=73.09  Aligned_cols=47  Identities=23%  Similarity=0.387  Sum_probs=40.3

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+++.|||+|||+|.+++..|+. |+ .+|+|||.|.-| +.|++.++.|
T Consensus        59 f~dK~VlDVGcGtGILS~F~akA-GA-~~V~aVe~S~ia-~~a~~iv~~N  105 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKA-GA-RKVYAVEASSIA-DFARKIVKDN  105 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHh-Cc-ceEEEEechHHH-HHHHHHHHhc
Confidence            45678999999999999999997 54 799999999877 8888877654

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.88  E-value=4.7e-05  Score=66.02  Aligned_cols=44  Identities=23%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|++|+.
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~   91 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHAL   91 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHH
Confidence            4568999999999999999875   3689999999999999999865

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.87  E-value=4.2e-05  Score=68.83  Aligned_cols=59  Identities=27%  Similarity=0.350  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC------cEEEEEeCCHHHHHHHHHHHH
Q 026108          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK------GSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~------a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++-+..+.++    .+.++.++||+|||||-|+..+.++. ..      .+|+.+|||+++|+++++.++
T Consensus        87 lWKd~~v~~L----~p~~~m~~lDvaGGTGDiaFril~~v-~s~~~~~~~~V~v~Dinp~mL~vgkqRa~  151 (296)
T KOG1540|consen   87 LWKDMFVSKL----GPGKGMKVLDVAGGTGDIAFRILRHV-KSQFGDRESKVTVLDINPHMLAVGKQRAK  151 (296)
T ss_pred             HHHHHhhhcc----CCCCCCeEEEecCCcchhHHHHHHhh-ccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence            3444455554    23356889999999999999999987 44      799999999999999998874

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.87  E-value=7.1e-05  Score=60.80  Aligned_cols=48  Identities=29%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~---~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +...|+|+|||-|.++..|+..+   .++.+|+|||.++..++.|++.+++
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~   75 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK   75 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence            45679999999999999999922   2578999999999999999887654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.85  E-value=2.3e-05  Score=70.02  Aligned_cols=46  Identities=26%  Similarity=0.417  Sum_probs=41.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..+||+||-+|.+++.+|+.|++ ..|+|+||++..++.|++|++.
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence            456999999999999999999965 6899999999999999999764

>PTZ00146 fibrillarin; Provisional

Probab=97.79  E-value=8.4e-05  Score=68.06  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=45.7

Q ss_pred             CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH----HHHHHH
Q 026108          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL----AAAVAA  237 (243)
Q Consensus       167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~----AL~~Ar  237 (243)
                      .+++.|..  --|...++.-+ ......++.+|||||||+|..+..+|...++...|+|||+|++    +++.|+
T Consensus       107 yR~w~p~r--SKlaa~i~~g~-~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak  178 (293)
T PTZ00146        107 YRVWNPFR--SKLAAAIIGGV-ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK  178 (293)
T ss_pred             eeeeCCcc--cHHHHHHHCCc-ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh
Confidence            45666642  12333333322 1122234568999999999999999998766679999999986    445554

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.79  E-value=4.2e-05  Score=74.76  Aligned_cols=72  Identities=17%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC--------CcEEEEEeCCHHHHHHHHHHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS--------KGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p--------~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .+-|...++.+++.+.... .........+|||.|||+|++.++++.++ +        ...++|+||++.++..|+.|+
T Consensus         6 fyTP~~ia~~mv~~~~~~~-~~~~~~~~~~ilDP~cGsG~fl~~~~~~~-~~~~~~~~~~~~i~g~DId~~a~~~a~~~l   83 (524)
T TIGR02987         6 FFTPPDIAKAMVANLVNEI-GKNDKSTKTKIIDPCCGDGRLIAALLKKN-EEINYFKEVELNIYFADIDKTLLKRAKKLL   83 (524)
T ss_pred             cCCcHHHHHHHHHHHhhhc-chhhcccceEEEeCCCCccHHHHHHHHHH-HhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence            4567778888887765533 11000134589999999999999999876 3        257999999999999999997


Q ss_pred             Hh
Q 026108          241 QR  242 (243)
Q Consensus       241 ~~  242 (243)
                      ..
T Consensus        84 ~~   85 (524)
T TIGR02987        84 GE   85 (524)
T ss_pred             hh
Confidence            54

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.79  E-value=2.8e-05  Score=67.45  Aligned_cols=36  Identities=33%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.+|||||||+|.++..+++..++..+|+|||+++
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            356899999999999999999865567999999986

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.78  E-value=9.5e-05  Score=66.14  Aligned_cols=62  Identities=16%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |++-.+...+....       +.++||++||+.|+-++.+|..++++++|+.+|++++..+.|++|.++
T Consensus        65 ~~~g~lL~~l~~~~-------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~  126 (247)
T PLN02589         65 ADEGQFLNMLLKLI-------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK  126 (247)
T ss_pred             HHHHHHHHHHHHHh-------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            45555555555543       346799999999999999999876688999999999999999999875

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.76  E-value=0.00011  Score=69.46  Aligned_cols=46  Identities=26%  Similarity=0.173  Sum_probs=41.1

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhC
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+|||+.||||..|+.++++. ++ .+|+++|++++|++.+++|++.|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~-~ga~~Vv~nD~n~~Av~~i~~N~~~N   92 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEI-EGVREVFANDINPKAVESIKNNVEYN   92 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhC-CCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            479999999999999999974 32 58999999999999999999764

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.75  E-value=6.2e-05  Score=70.25  Aligned_cols=74  Identities=27%  Similarity=0.347  Sum_probs=56.5

Q ss_pred             ccccccC--CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          160 DLVLSVE--EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       160 ~l~f~v~--~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      |..|.+|  .-.|.||-.+|-.  .+.+..      .++.+|+|+.+|-|.+++.+|+. + ...|+|+|++|.|++..+
T Consensus       159 G~~f~vD~~Kv~Fsprl~~ER~--Rva~~v------~~GE~V~DmFAGVGpfsi~~Ak~-g-~~~V~A~diNP~A~~~L~  228 (341)
T COG2520         159 GCRFKVDVAKVYFSPRLSTERA--RVAELV------KEGETVLDMFAGVGPFSIPIAKK-G-RPKVYAIDINPDAVEYLK  228 (341)
T ss_pred             CEEEEEchHHeEECCCchHHHH--HHHhhh------cCCCEEEEccCCcccchhhhhhc-C-CceEEEEecCHHHHHHHH
Confidence            5666665  4457788666653  233332      13568999999999999999996 3 345999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +|++.|
T Consensus       229 eNi~LN  234 (341)
T COG2520         229 ENIRLN  234 (341)
T ss_pred             HHHHhc
Confidence            999876

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.75  E-value=7.4e-05  Score=53.73  Aligned_cols=40  Identities=33%  Similarity=0.517  Sum_probs=35.2

Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +++|+|||+|.++..++. . ...+++++|+++.+++.++++
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~   40 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKA   40 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHH
Confidence            489999999999999988 3 568999999999999998843

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.73  E-value=4.2e-05  Score=64.64  Aligned_cols=38  Identities=34%  Similarity=0.555  Sum_probs=32.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA  232 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~A  232 (243)
                      ++.+|||+|||+|.++..++..+.+..+|+|+|+|+.+
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~   69 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK   69 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence            46789999999999999998876455789999999853

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.69  E-value=9.6e-05  Score=71.03  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.+++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~   77 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNES   77 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHH
Confidence            34689999999999999999863   599999999999988764

>PRK00811 spermidine synthase; Provisional

Probab=97.68  E-value=0.00011  Score=66.54  Aligned_cols=46  Identities=15%  Similarity=0.120  Sum_probs=39.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||||||+|.++..++++. ...+|++||+++++++.|+++..
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~  121 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLP  121 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhH
Confidence            35689999999999999998863 44699999999999999999864

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.67  E-value=0.0001  Score=65.15  Aligned_cols=41  Identities=10%  Similarity=-0.054  Sum_probs=36.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+||+.|||.|.-++.||..   +.+|+|+|+|+.|++.+.+
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~   83 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFS   83 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHH
Confidence            3568999999999999999985   4799999999999999865

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.65  E-value=3.7e-05  Score=68.35  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      -.++||||||||-.+..+-...   ...+|||||+.|++.|.+.
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK  166 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence            4689999999999999998764   6999999999999999764

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.63  E-value=0.00015  Score=68.93  Aligned_cols=47  Identities=23%  Similarity=0.164  Sum_probs=41.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++++|||++|-||.+++.+|.. |. .+|+.||+|..||++|++|++.|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g-GA-~~vt~VD~S~~al~~a~~N~~LN  263 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG-GA-SEVTSVDLSKRALEWARENAELN  263 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc-CC-CceEEEeccHHHHHHHHHHHHhc
Confidence            4778999999999999999984 32 39999999999999999999865

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.59  E-value=0.00018  Score=62.00  Aligned_cols=44  Identities=20%  Similarity=0.362  Sum_probs=38.7

Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+||||||.|-..+.+|... |+..++|+|++...+..|.+.+.+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~   63 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK   63 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH
T ss_pred             eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh
Confidence            69999999999999999996 999999999999999999887754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.56  E-value=9.6e-05  Score=64.11  Aligned_cols=44  Identities=23%  Similarity=0.230  Sum_probs=36.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      -.++||+|||.|.++..||.+.   .+++++|+|+.||+.|++..+.
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~   87 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG   87 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT
T ss_pred             cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC
Confidence            3579999999999999999985   6999999999999999987653

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.53  E-value=0.00016  Score=63.94  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=35.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV-AAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~-Ar~N  239 (243)
                      ++.++||+|||+|.++..+++. | ..+|+|||+++.++.. .++|
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~  118 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD  118 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC
Confidence            5668999999999999999986 3 3699999999987765 4443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.48  E-value=0.00021  Score=63.57  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=61.0

Q ss_pred             cccCCCcccCC-ccHHHHHHHHHHHhhhcCCCC--CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          163 LSVEEGVFIPR-PETELMVDLVSDVLVRDNDGL--RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       163 f~v~~~vliPR-p~TElLv~~v~~~l~~~~~~~--~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ..+.++.|.|- |.-.-.+..+.+++...++..  +..++||+|+|.-||--.+..+. -++..+|.||++.+++.|+.|
T Consensus        43 wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~i  121 (292)
T COG3129          43 WDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAI  121 (292)
T ss_pred             ecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHH
Confidence            44577888885 777777777777774333322  34589999999999976666553 468999999999999999999


Q ss_pred             HHhC
Q 026108          240 AQRI  243 (243)
Q Consensus       240 a~~~  243 (243)
                      +..|
T Consensus       122 i~~N  125 (292)
T COG3129         122 ISAN  125 (292)
T ss_pred             HHcC
Confidence            8764

>PLN02366 spermidine synthase

Probab=97.46  E-value=0.00088  Score=61.76  Aligned_cols=46  Identities=20%  Similarity=0.180  Sum_probs=39.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+++||+||||.|.++..+++. .+..+|+.||++++.+++|+++..
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~  136 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFP  136 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhh
Confidence            3578999999999999999986 234699999999999999999753

>TIGR00417 speE spermidine synthase

Probab=97.45  E-value=0.00044  Score=62.12  Aligned_cols=45  Identities=13%  Similarity=0.134  Sum_probs=39.1

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+|||||||+|.++..+++.. +..+|+++|+++++++.|+++..
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~  117 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLP  117 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhH
Confidence            4589999999999999888763 45799999999999999999763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.45  E-value=9.8e-05  Score=65.86  Aligned_cols=38  Identities=37%  Similarity=0.440  Sum_probs=34.7

Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      .++|+|||+|--++.+|..+   .+|+|+|+|+.+|++|++
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k   73 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKK   73 (261)
T ss_pred             eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhc
Confidence            69999999998888888875   699999999999999986

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.42  E-value=0.0001  Score=63.96  Aligned_cols=50  Identities=34%  Similarity=0.569  Sum_probs=43.7

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +...+++|||+|+|||..+|+.|+. |. ..|++.|+.+..+...+.|++.|
T Consensus        76 etVrgkrVLd~gagsgLvaIAaa~a-GA-~~v~a~d~~P~~~~ai~lNa~an  125 (218)
T COG3897          76 ETVRGKRVLDLGAGSGLVAIAAARA-GA-AEVVAADIDPWLEQAIRLNAAAN  125 (218)
T ss_pred             cccccceeeecccccChHHHHHHHh-hh-HHHHhcCCChHHHHHhhcchhhc
Confidence            3446789999999999999999996 44 79999999999999999998865

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.36  E-value=0.00056  Score=62.03  Aligned_cols=64  Identities=25%  Similarity=0.404  Sum_probs=44.2

Q ss_pred             ccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL------GSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       170 liPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~------~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.|+..++++++.+.        ..++.+|+|-+||+|.+.+.+.+.+      ....+++|+|+++.++.+|+.|+.
T Consensus        29 ~TP~~i~~l~~~~~~--------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~   98 (311)
T PF02384_consen   29 YTPREIVDLMVKLLN--------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL   98 (311)
T ss_dssp             ---HHHHHHHHHHHT--------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred             ehHHHHHHHHHhhhh--------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence            456665555555441        1134579999999999999888742      156899999999999999999874

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.34  E-value=0.00071  Score=68.71  Aligned_cols=69  Identities=20%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC---------------------------------
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---------------------------------  218 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~---------------------------------  218 (243)
                      |-|..|.|...++... ...  ..+..++|.+||||.|.|..|....                                 
T Consensus       170 ~Apl~etlAaa~l~~a-~w~--~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~  246 (702)
T PRK11783        170 EAPLKENLAAAILLRS-GWP--QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE  246 (702)
T ss_pred             CCCCcHHHHHHHHHHc-CCC--CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence            3477788888777643 211  1346799999999999999887310                                 


Q ss_pred             --------CCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          219 --------SKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       219 --------p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                              ...+++|+|+++.|++.|++|++.+
T Consensus       247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~  279 (702)
T PRK11783        247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRA  279 (702)
T ss_pred             HHhhcccccCceEEEEECCHHHHHHHHHHHHHc
Confidence                    1137999999999999999999763

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.32  E-value=0.00054  Score=63.10  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=34.1

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~  235 (243)
                      +.++++|||+|||+|..+..++.+ |+ ..|+|+|-++..+..
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~Q  153 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQ  153 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHH
Confidence            456789999999999999999987 45 589999998765543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK03612 spermidine synthase; Provisional

Probab=97.31  E-value=0.00034  Score=68.65  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=38.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++++|||+|||+|.++..++++ ++..+|++||+++++++.|++|
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~  340 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTS  340 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhC
Confidence            4568999999999999998875 2337999999999999999995

>PRK01581 speE spermidine synthase; Validated

Probab=97.25  E-value=0.00079  Score=63.55  Aligned_cols=43  Identities=19%  Similarity=0.095  Sum_probs=37.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      .+.+||++|||.|..+..+.+. ++..+|++||++++++++|++
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHh
Confidence            3568999999999988888875 355799999999999999996

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.25  E-value=0.00046  Score=60.53  Aligned_cols=40  Identities=28%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      .+.+||+.|||.|.-.+.||.+   +.+|+|+|+|+.|++.|.
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~   76 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAF   76 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHH
T ss_pred             CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHH
Confidence            3568999999999999999985   489999999999999984

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.19  E-value=0.00059  Score=63.76  Aligned_cols=46  Identities=22%  Similarity=0.257  Sum_probs=41.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++..|||=.||||.|.|.+...   +++|+|+|++..+++-|+.|.+.+
T Consensus       197 ~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y  242 (347)
T COG1041         197 RGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYY  242 (347)
T ss_pred             cCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhh
Confidence            4568999999999999998874   589999999999999999999764

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.16  E-value=0.0012  Score=57.44  Aligned_cols=47  Identities=19%  Similarity=0.283  Sum_probs=36.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..++|||||.|...+.+|... +-.+++|||+.+...+.|+.+.++
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~   88 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEE   88 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHH
Confidence            45689999999999999998876 434699999999999999887653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.12  E-value=0.0009  Score=58.98  Aligned_cols=47  Identities=19%  Similarity=0.105  Sum_probs=35.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +-++.|-|||+|.+.--++...+.. ..|+|.||++++|++|++|...
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L   99 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL   99 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence            4579999999999976666543222 4899999999999999999753

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.10  E-value=0.0012  Score=58.54  Aligned_cols=63  Identities=27%  Similarity=0.307  Sum_probs=51.0

Q ss_pred             cCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       171 iPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .|.++++.+...+....       ....|+|..||.|--+|-.|..+   ..|++|||+|.-+..|++|++-|
T Consensus        77 Tpe~ia~~iA~~v~~~~-------~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiY  139 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACM-------NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVY  139 (263)
T ss_pred             ccHHHHHHHHHHHHHhc-------CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceee
Confidence            35677888877776543       22459999999999999999874   69999999999999999999753

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.94  E-value=0.0039  Score=56.36  Aligned_cols=61  Identities=23%  Similarity=0.170  Sum_probs=43.5

Q ss_pred             HHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       180 v~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +..++.-+....+...+.+|||+|+|.|.-..++...++.-.+++++|.|+.++++++.=+
T Consensus        18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~   78 (274)
T PF09243_consen   18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL   78 (274)
T ss_pred             HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence            3344443422223445678999999999987777776633458999999999999988744

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.88  E-value=0.0029  Score=61.59  Aligned_cols=49  Identities=20%  Similarity=0.293  Sum_probs=44.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|+|.|.=+..+|..++....|+++|+++.-++..++|++++
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~  161 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC  161 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            5678999999999999999998755679999999999999999999863

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.003  Score=55.54  Aligned_cols=48  Identities=23%  Similarity=0.461  Sum_probs=40.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.++||+|+|||.++..+|...++. ..++|||.-++.++.+++|+.+
T Consensus        82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k  130 (237)
T KOG1661|consen   82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDK  130 (237)
T ss_pred             cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHh
Confidence            46789999999999999888655443 3459999999999999999875

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.81  E-value=0.0025  Score=56.41  Aligned_cols=45  Identities=13%  Similarity=0.275  Sum_probs=40.4

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+||||||.|...+.+|++. |+..++|||+....+..|.+-+.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~   94 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKE   94 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHH
Confidence            469999999999999999995 999999999999999888776654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.73  E-value=0.0042  Score=60.13  Aligned_cols=44  Identities=25%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             CCcEEEeccCCcHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~---~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +..|+|+|||+|.+....++.   .+...+|+|||.|+.|+...++.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~  233 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKR  233 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHH
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHH
Confidence            467999999999998776653   11236999999999999776554

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=96.70  E-value=0.0018  Score=56.27  Aligned_cols=42  Identities=31%  Similarity=0.512  Sum_probs=37.5

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..+.|||+|||.++...|+.  . -+|+|++.+|.-.++|.+|+.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A-~rViAiE~dPk~a~~a~eN~~   75 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--A-ERVIAIEKDPKRARLAEENLH   75 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--h-ceEEEEecCcHHHHHhhhcCC
Confidence            45899999999999999886  3 599999999999999999963

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.68  E-value=0.0035  Score=58.76  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=37.3

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +..++.|||+|||||+++...|.. |. .+|++||.|. +.+.|++-++
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqA-GA-~~vYAvEAS~-MAqyA~~Lv~  220 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQA-GA-KKVYAVEASE-MAQYARKLVA  220 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHh-Cc-ceEEEEehhH-HHHHHHHHHh
Confidence            445678999999999999999986 44 6999999985 6677776544

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.66  E-value=0.0076  Score=50.90  Aligned_cols=59  Identities=15%  Similarity=0.240  Sum_probs=42.1

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      |-+--..|++.++... ..    ++..|||-.+|||.-++++.. +  +-+.+|+|++++.+++|++
T Consensus       173 ~~~kP~~l~~~lI~~~-t~----~gdiVlDpF~GSGTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  173 PTQKPVELIERLIKAS-TN----PGDIVLDPFAGSGTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             TT-S-HHHHHHHHHHH-S-----TT-EEEETT-TTTHHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred             eecCCHHHHHHHHHhh-hc----cceeeehhhhccChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence            4444455777777665 21    456899999999999988766 3  4689999999999999975

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.0071  Score=54.61  Aligned_cols=42  Identities=17%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +..||++|+|.|+++..|++..   .+|+|+|+++..++..++..
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~   72 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERF   72 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhc
Confidence            5689999999999999999973   68999999999999887764

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.62  E-value=0.0015  Score=58.39  Aligned_cols=87  Identities=15%  Similarity=0.273  Sum_probs=58.8

Q ss_pred             eEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC--cEEEEEe
Q 026108          150 QYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVD  227 (243)
Q Consensus       150 ~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~--a~V~avD  227 (243)
                      .|..-...+|+.-+..++.-|.+  +-+.|...+-.+. .. ......+||++|||.|....-+.+.. ++  ..|+++|
T Consensus        30 ~y~~~~~k~wD~fy~~~~~rFfk--dR~wL~~Efpel~-~~-~~~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acD  104 (264)
T KOG2361|consen   30 KYEREASKYWDTFYKIHENRFFK--DRNWLLREFPELL-PV-DEKSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACD  104 (264)
T ss_pred             hhhcchhhhhhhhhhhccccccc--hhHHHHHhhHHhh-Cc-cccChhhheeeccCCCcccchhhhcC-CCCCeEEEEcC
Confidence            35544555566555566666643  3344444444444 11 11122379999999999988888864 66  8999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026108          228 LNPLAAAVAAFNAQ  241 (243)
Q Consensus       228 iS~~AL~~Ar~Na~  241 (243)
                      .|+.|+++-++|.+
T Consensus       105 fsp~Ai~~vk~~~~  118 (264)
T KOG2361|consen  105 FSPRAIELVKKSSG  118 (264)
T ss_pred             CChHHHHHHHhccc
Confidence            99999999998864

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.62  E-value=0.0096  Score=52.86  Aligned_cols=61  Identities=18%  Similarity=0.321  Sum_probs=49.2

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      |+.-.+++.+++.+       .++++||||+=+|+-+++.|..+.++++|+++|+++++.+++.+-.+
T Consensus        59 ~d~g~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k  119 (237)
T KOG1663|consen   59 PDKGQFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK  119 (237)
T ss_pred             hHHHHHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH
Confidence            34445566666655       35689999999999999999999778999999999999999866443

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=96.62  E-value=0.0028  Score=58.92  Aligned_cols=82  Identities=17%  Similarity=0.265  Sum_probs=62.2

Q ss_pred             ccccccCCCcccCC-ccHHHHHHHHHHHhhhcCCCCCCC--cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          160 DLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       160 ~l~f~v~~~vliPR-p~TElLv~~v~~~l~~~~~~~~~~--rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      |+...+.++.|+|+ |.---.+.++-+++ ...+..++.  +-+|||||.-||--++..+. -++..+|+|+++-.+..|
T Consensus        65 gl~veiP~grLcPtVPnR~nYihwI~DLL-ss~q~~k~~i~~GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a  142 (419)
T KOG2912|consen   65 GLSVEIPLGRLCPTVPNRLNYIHWIEDLL-SSQQSDKSTIRRGIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYA  142 (419)
T ss_pred             CceEecCccccCCCCccchhhHHHHHHHh-hcccCCCcceeeeeeccCchhhhHHhhhchh-ccceeeeeeccccccchh
Confidence            56777889999998 76666777777777 333322222  24899999999977766554 468999999999999999


Q ss_pred             HHHHHhC
Q 026108          237 AFNAQRI  243 (243)
Q Consensus       237 r~Na~~~  243 (243)
                      ..|+.+|
T Consensus       143 ~snV~qn  149 (419)
T KOG2912|consen  143 KSNVEQN  149 (419)
T ss_pred             hcccccc
Confidence            9998764

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.57  E-value=0.003  Score=55.19  Aligned_cols=41  Identities=34%  Similarity=0.345  Sum_probs=35.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ..+|+|||.|+|.+++.+++++ |+.+++..|. |+.++.+++
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~  141 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE  141 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH
T ss_pred             ccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc
Confidence            3579999999999999999997 9999999999 888887765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.51  E-value=0.0082  Score=56.91  Aligned_cols=65  Identities=25%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC--------------------------------
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--------------------------------  220 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~--------------------------------  220 (243)
                      -|.-|.|...++... ...   ++..++|--||||.|.|..|... ++                                
T Consensus       173 ApLketLAaAil~la-gw~---~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~  247 (381)
T COG0116         173 APLKETLAAAILLLA-GWK---PDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER  247 (381)
T ss_pred             CCchHHHHHHHHHHc-CCC---CCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence            377788877776543 221   23469999999999999999863 32                                


Q ss_pred             c-------EEEEEeCCHHHHHHHHHHHHh
Q 026108          221 G-------SIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       221 a-------~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +       .++|+|+++.+++.|+.|+++
T Consensus       248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~  276 (381)
T COG0116         248 ARRGKELPIIYGSDIDPRHIEGAKANARA  276 (381)
T ss_pred             HhhcCccceEEEecCCHHHHHHHHHHHHh
Confidence            2       277999999999999999975

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.50  E-value=0.014  Score=53.27  Aligned_cols=90  Identities=20%  Similarity=0.336  Sum_probs=62.2

Q ss_pred             CceeEEeeeccccccccccCCCc--ccCCccHHHHHH---------------HHHHHhhhcCCCCCCCcEEEeccCCcHH
Q 026108          147 KPFQYLVGCEHWRDLVLSVEEGV--FIPRPETELMVD---------------LVSDVLVRDNDGLRDGFWVDLGTGSGAI  209 (243)
Q Consensus       147 ~Pl~yi~g~~~f~~l~f~v~~~v--liPRp~TElLv~---------------~v~~~l~~~~~~~~~~rVLDLGtGSG~i  209 (243)
                      -|..-|+|+.  +|-.+..+.+-  .+-+|.-|++.-               .++..+    ...++.+|++-|||||.+
T Consensus        46 ~~h~~iIGK~--~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L----~i~PGsvV~EsGTGSGSl  119 (314)
T KOG2915|consen   46 LPHSDIIGKP--YGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSML----EIRPGSVVLESGTGSGSL  119 (314)
T ss_pred             cchhheecCC--ccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHh----cCCCCCEEEecCCCcchH
Confidence            4555667753  35555556552  333455555432               222333    233577999999999999


Q ss_pred             HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          210 AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       210 ai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.++++..+|.++++-.|+...-.+.|++..++
T Consensus       120 ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~  152 (314)
T KOG2915|consen  120 SHAIARAVAPTGHLYTFEFHETRAEKALEEFRE  152 (314)
T ss_pred             HHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH
Confidence            999999999999999999988877777776554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.36  E-value=0.013  Score=52.46  Aligned_cols=55  Identities=22%  Similarity=0.289  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +++.+.+.+ .   ..++..|+|+|.|.|.++..|++..   .+|+++|+++..++..++..
T Consensus        18 ~~~~Iv~~~-~---~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~   72 (262)
T PF00398_consen   18 IADKIVDAL-D---LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERF   72 (262)
T ss_dssp             HHHHHHHHH-T---CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHC
T ss_pred             HHHHHHHhc-C---CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHh
Confidence            456666655 2   1145689999999999999999872   79999999999999888754

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.32  E-value=0.007  Score=56.38  Aligned_cols=44  Identities=14%  Similarity=0.054  Sum_probs=31.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||||||-|--..-..+.  .-..++|+||+.++|+.|++..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry  105 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERY  105 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999977655555443  2369999999999999999866

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.31  E-value=0.028  Score=48.16  Aligned_cols=63  Identities=17%  Similarity=0.031  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHhhhcCC-CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          175 ETELMVDLVSDVLVRDND-GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       175 ~TElLv~~v~~~l~~~~~-~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ..+++..++.+-+..... .....+++|+|||.|.=||.+|-.+ |+.+|+.+|-+..=+..-++
T Consensus        27 ~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~   90 (184)
T PF02527_consen   27 PEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKE   90 (184)
T ss_dssp             HHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHH
Confidence            345555566654421111 1112279999999999999999986 99999999999866655443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.23  E-value=0.019  Score=52.95  Aligned_cols=60  Identities=28%  Similarity=0.392  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .|.+.+++.+ .   ..+++.++|.=+|.|-.+..+++.+ ++++|+|+|.+++|++.|+++.+.
T Consensus         7 Vll~Evl~~L-~---~~~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006         7 VLLDEVVEGL-N---IKPDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             hhHHHHHHhc-C---cCCCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhh
Confidence            3566677766 2   2245689999999999999999987 458999999999999999987653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.22  E-value=0.0095  Score=58.43  Aligned_cols=45  Identities=20%  Similarity=0.211  Sum_probs=39.6

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ...+||||||.|-+.+.+|... |+..++|+|++...+..|.+.+.
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~  392 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAG  392 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHH
Confidence            4579999999999999999996 99999999999988887766554

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.19  E-value=0.017  Score=53.57  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=50.8

Q ss_pred             CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH
Q 026108          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~---p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      |..+--|.|.++|-+...++. ..-  ..+..++|||||+|.=...|...+.   .....+++|||.++|+.+.+++.
T Consensus        51 pEYYptr~E~~iL~~~~~~Ia-~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        51 PEYYLTNDEIEILKKHSSDIA-ASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             CccCChHHHHHHHHHHHHHHH-Hhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence            333333678888877766655 221  1345799999999997665555441   23579999999999999998876

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK10742 putative methyltransferase; Provisional

Probab=96.17  E-value=0.018  Score=51.68  Aligned_cols=42  Identities=29%  Similarity=0.249  Sum_probs=38.7

Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +|||+.+|+|..++.+|..   +++|+++|.|+.+..+.++|+++
T Consensus        91 ~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~r  132 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLAR  132 (250)
T ss_pred             EEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHH
Confidence            7999999999999999986   47899999999999999999875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=96.12  E-value=0.0081  Score=51.98  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARV  216 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~  216 (243)
                      ++.+|||||||.|.+...|.++
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~   34 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE   34 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh
Confidence            3578999999999999999886

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK11524 putative methyltransferase; Provisional

Probab=96.05  E-value=0.028  Score=50.90  Aligned_cols=58  Identities=10%  Similarity=-0.005  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      -+.|++.++... .    .++..|||-++|||.-++++.+ +  +-+.+|+|++++.+++|++.++
T Consensus       194 P~~L~erlI~~~-S----~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        194 PEALLKRIILAS-S----NPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             hHHHHHHHHHHh-C----CCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHH
Confidence            345666666554 1    2467899999999998887766 3  4699999999999999998764

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=95.96  E-value=0.029  Score=50.94  Aligned_cols=61  Identities=25%  Similarity=0.245  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCc----HHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHH
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG----AIAIGIARVLG----SKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG----~iai~LA~~~~----p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +.+.+.+++.+...... ..-+|+-.||+||    .||+.|...++    ...+|+|+|||..+|+.|++
T Consensus        79 ~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          79 EELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             HHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            44566666644221111 3568999999999    57888888752    14799999999999999975

>PLN02823 spermine synthase

Probab=95.94  E-value=0.015  Score=54.25  Aligned_cols=45  Identities=13%  Similarity=0.164  Sum_probs=39.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .+++||-||+|.|..+..+.+.. +..+|++||++++.+++|+++.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~  147 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHL  147 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhc
Confidence            34689999999999999888753 4578999999999999999875

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=95.92  E-value=0.024  Score=49.88  Aligned_cols=64  Identities=22%  Similarity=0.149  Sum_probs=46.3

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCC--CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLR--DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~--~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      +|-..|++..++.+.+. .....+  +.+++|+|+|.|.=|+-+|-.+ |+.+|+.+|-...=+..-+
T Consensus        43 ~~~~~e~~~rHilDSl~-~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~  108 (215)
T COG0357          43 IRDPEELWQRHILDSLV-LLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLR  108 (215)
T ss_pred             CCCHHHHHHHHHHHHhh-hhhcccccCCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHH
Confidence            45556777777777652 112222  4789999999999999999765 8899999998775444433

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.89  E-value=0.016  Score=50.02  Aligned_cols=62  Identities=24%  Similarity=0.189  Sum_probs=36.5

Q ss_pred             HHHHHHHHHH-HhhhcCCCCCCCcEEEeccCCcH----HHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHH
Q 026108          176 TELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLG---S-KGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       176 TElLv~~v~~-~l~~~~~~~~~~rVLDLGtGSG~----iai~LA~~~~---p-~a~V~avDiS~~AL~~Ar~  238 (243)
                      -+.+.+.+++ .+ ......+..+|+..||+||-    +|+.+.....   + ..+|+|+|||+.+|+.|++
T Consensus        12 f~~l~~~vlp~~~-~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   12 FEALRDEVLPPLL-ARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             HHHHHHHHH--------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             HHHHHHHHHHhhc-cccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            3456666663 33 21122245689999999995    4555555210   1 3699999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK13699 putative methylase; Provisional

Probab=95.82  E-value=0.043  Score=48.34  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      |-+--..|.+.++... .    .++..|||-.||||..+++..+.   +-+.+|+|++++..+.|.+.++
T Consensus       145 p~~kP~~l~~~~i~~~-s----~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~  206 (227)
T PRK13699        145 PTEKPVTSLQPLIESF-T----HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLA  206 (227)
T ss_pred             CCCCcHHHHHHHHHHh-C----CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHH
Confidence            4333334556555543 1    24568999999999999987763   4689999999999999988765

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.67  E-value=0.042  Score=49.93  Aligned_cols=49  Identities=24%  Similarity=0.381  Sum_probs=43.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|+|.|-=+..+|...+..+.|+|.|+++.-+...++|++++
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~  133 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL  133 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc
Confidence            4568999999999999999998755689999999999999999998864

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.64  E-value=0.019  Score=54.21  Aligned_cols=47  Identities=17%  Similarity=0.087  Sum_probs=42.7

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ..+|+|--+|||.=||..|.+. +..+|+.-||||+|++++++|++.|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N   99 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLN   99 (380)
T ss_pred             CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhc
Confidence            4679999999999999999997 4449999999999999999999875

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=95.58  E-value=0.046  Score=49.94  Aligned_cols=43  Identities=16%  Similarity=0.392  Sum_probs=37.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +...||++|-|+|.++..|...   +++|+|+|+++.+++.-.+..
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv  100 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRV  100 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHh
Confidence            4567999999999999999875   489999999999998776654

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=95.54  E-value=0.038  Score=49.96  Aligned_cols=39  Identities=23%  Similarity=0.393  Sum_probs=34.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      ...++||||.|.|-++..++..+   .+|+++|+|+.|...-
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL  132 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRL  132 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHH
Confidence            45679999999999999999987   5899999999986543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.52  E-value=0.04  Score=40.36  Aligned_cols=40  Identities=35%  Similarity=0.548  Sum_probs=30.5

Q ss_pred             EEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHH
Q 026108          199 WVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       199 VLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++|+|||+|... .++... .. ..++++|+++.+++.++.+.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~   92 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARA   92 (257)
T ss_pred             eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhh
Confidence            999999999987 444432 22 48999999999999865543

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.35  E-value=0.043  Score=48.47  Aligned_cols=46  Identities=15%  Similarity=0.197  Sum_probs=41.9

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+++|+||--|.+++.|-+. ++...++++|+++..++.|.+|++++
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~   63 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKN   63 (226)
T ss_pred             CceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhc
Confidence            35999999999999999997 58789999999999999999998764

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=0.039  Score=46.39  Aligned_cols=60  Identities=38%  Similarity=0.541  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       175 ~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .||. ++.++.++ ..   .+.++.+|||+|.|.|-++.|++ | -..-+|+|.++-.+..++-.+-
T Consensus        57 tteQ-v~nVLSll-~~---n~~GklvDlGSGDGRiVlaaar~-g-~~~a~GvELNpwLVaysrl~a~  116 (199)
T KOG4058|consen   57 TTEQ-VENVLSLL-RG---NPKGKLVDLGSGDGRIVLAAARC-G-LRPAVGVELNPWLVAYSRLHAW  116 (199)
T ss_pred             cHHH-HHHHHHHc-cC---CCCCcEEeccCCCceeehhhhhh-C-CCcCCceeccHHHHHHHHHHHH
Confidence            3444 55667666 22   24467999999999999999986 3 3578999999999999886653

>PHA01634 hypothetical protein

Probab=95.20  E-value=0.048  Score=44.74  Aligned_cols=46  Identities=9%  Similarity=-0.036  Sum_probs=41.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++++|+|+|.+-|--+|..+.+ |+ ..|++++.++...+..++|.+.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~-GA-K~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLR-GA-SFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhc-Cc-cEEEEeccCHHHHHHHHHHhhh
Confidence            5678999999999999999986 44 6999999999999999999864

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=94.93  E-value=0.019  Score=47.87  Aligned_cols=36  Identities=31%  Similarity=0.474  Sum_probs=29.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      +.++|||||+.|..+-.+.++.++.++|+|||+.+.
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            468999999999999999987434689999999764

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=94.93  E-value=0.053  Score=49.63  Aligned_cols=44  Identities=20%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             CCcEEEeccCCcH----HHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGA----IAIGIARVLG---SKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~----iai~LA~~~~---p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      .-+|+..||+||-    ||+.+....+   .+.+|+|+|||+.+|+.|++-
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            3689999999995    5555555321   136899999999999999874

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.54  E-value=0.075  Score=50.40  Aligned_cols=48  Identities=23%  Similarity=0.155  Sum_probs=39.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +.++||.=+|||.=||..+++++...+|++-|+|++|++..++|++.|
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N   97 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN   97 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence            357999999999999999999633468999999999999999999865

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.39  E-value=0.062  Score=42.55  Aligned_cols=32  Identities=22%  Similarity=0.185  Sum_probs=26.6

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ....+|||||.|.+.-.|.++   +....|+|.-.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            456999999999999988876   47889999754

; GO: 0008168 methyltransferase activity

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=94.38  E-value=0.15  Score=44.54  Aligned_cols=42  Identities=14%  Similarity=0.084  Sum_probs=36.2

Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +||+||+|||-.+..+|.++ |+.+-.-.|.++..+..-+..+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~   69 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWI   69 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHH
Confidence            59999999999999999998 8899999999998875554433

The function of this family is unknown.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=94.36  E-value=0.019  Score=51.53  Aligned_cols=42  Identities=29%  Similarity=0.322  Sum_probs=37.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~N  239 (243)
                      ++.+|||-|+|-|..+|..+++   ++ +|+-+|.++..|++|..|
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lN  176 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLN  176 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccC
Confidence            4679999999999999999886   35 999999999999999877

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.18  E-value=0.073  Score=51.65  Aligned_cols=44  Identities=25%  Similarity=0.404  Sum_probs=38.0

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..|||+|||+|-+++.+++. |. -.|+|+|.-..+.+.|++-..+
T Consensus        68 v~vLdigtGTGLLSmMAvra-ga-D~vtA~EvfkPM~d~arkI~~k  111 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRA-GA-DSVTACEVFKPMVDLARKIMHK  111 (636)
T ss_pred             EEEEEccCCccHHHHHHHHh-cC-CeEEeehhhchHHHHHHHHHhc
Confidence            46999999999999999887 44 4799999999999999986554

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=94.18  E-value=0.051  Score=45.94  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=18.1

Q ss_pred             CCcEEEeccCCcHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARV  216 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~  216 (243)
                      +.+|||+|||+|.++..++..
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~   34 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDE   34 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhc
Confidence            457999999999999988764

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=94.15  E-value=0.2  Score=42.93  Aligned_cols=61  Identities=20%  Similarity=0.249  Sum_probs=43.9

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      |....+.+.....+    ....+..||++|.|+|.|+-++.++.-+...++++|.|++.+..-.+
T Consensus        31 PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~   91 (194)
T COG3963          31 PSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ   91 (194)
T ss_pred             CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH
Confidence            34445566555544    12235579999999999999887764356799999999998876554

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.06  E-value=0.045  Score=48.18  Aligned_cols=45  Identities=16%  Similarity=0.271  Sum_probs=39.4

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+.|||||-|-+.+.|+-.+ |+.-+.|.||-...-+.-++.++.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~A  106 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQA  106 (249)
T ss_pred             ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHH
Confidence            459999999999999999987 999999999998888877776653

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=93.86  E-value=0.086  Score=46.60  Aligned_cols=44  Identities=23%  Similarity=0.206  Sum_probs=35.7

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+|++|||+|.---..-..  |...|+++|-++.+-+.|.+.++.
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E  121 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAE  121 (252)
T ss_pred             cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhh
Confidence            34899999999876554332  678999999999999999887764

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=93.86  E-value=0.11  Score=46.63  Aligned_cols=60  Identities=15%  Similarity=0.163  Sum_probs=41.5

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      |+-+.+.+.+..++      ....+|+|||||-==+++..... .+++.++|+||+..+++....-.
T Consensus        90 ~~Ld~fY~~if~~~------~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l  149 (251)
T PF07091_consen   90 PNLDEFYDEIFGRI------PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFL  149 (251)
T ss_dssp             GGHHHHHHHHCCCS---------SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhcC------CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHH
Confidence            44455555555543      12467999999998888877665 37789999999999999876543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=93.85  E-value=0.18  Score=47.41  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p-~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|.+-|-=+..+|..... +..|+|+|+|+.=++..++|+++.
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl  205 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL  205 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence            5678999999999998888887522 356799999999999999999873

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=93.81  E-value=0.095  Score=48.56  Aligned_cols=58  Identities=26%  Similarity=0.366  Sum_probs=42.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      |++.+++++ .   ..+++.++|.=-|.|-.+.++.+.+ ++++|+|+|.+++|++.|+++.+
T Consensus         8 ll~Evl~~L-~---~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~   65 (310)
T PF01795_consen    8 LLKEVLEAL-N---PKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLK   65 (310)
T ss_dssp             THHHHHHHH-T-----TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTC
T ss_pred             cHHHHHHhh-C---cCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHh
Confidence            566677766 2   2245689999999999999999987 66999999999999999987754

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=93.79  E-value=0.35  Score=44.59  Aligned_cols=47  Identities=17%  Similarity=0.223  Sum_probs=39.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~--a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+.+|||++||.|..-+-..... |.  .+|...|.|+.+++..++-++.
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g~~li~~  183 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKGRALIAE  183 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            45689999999999988777765 54  6999999999999999887654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK00536 speE spermidine synthase; Provisional

Probab=93.20  E-value=0.43  Score=43.21  Aligned_cols=87  Identities=3%  Similarity=-0.200  Sum_probs=55.7

Q ss_pred             CceeEE-eeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEE
Q 026108          147 KPFQYL-VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA  225 (243)
Q Consensus       147 ~Pl~yi-~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~a  225 (243)
                      -|.|-| +-+...+|.-+.+| ++.. -...|.+....+-.. .-.....+++||=+|.|-|..+-.+.++  +. +|+.
T Consensus        26 S~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHp-pl~~h~~pk~VLIiGGGDGg~~REvLkh--~~-~v~m   99 (262)
T PRK00536         26 SEHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHM-GGCTKKELKEVLIVDGFDLELAHQLFKY--DT-HVDF   99 (262)
T ss_pred             CCCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHH-HHhhCCCCCeEEEEcCCchHHHHHHHCc--CC-eeEE
Confidence            455543 22334457777777 5543 222233333322221 1011224578999999999999999986  54 9999


Q ss_pred             EeCCHHHHHHHHHH
Q 026108          226 VDLNPLAAAVAAFN  239 (243)
Q Consensus       226 vDiS~~AL~~Ar~N  239 (243)
                      |||+++.++.+++-
T Consensus       100 VeID~~Vv~~~k~~  113 (262)
T PRK00536        100 VQADEKILDSFISF  113 (262)
T ss_pred             EECCHHHHHHHHHH
Confidence            99999999999983

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=92.88  E-value=0.18  Score=49.34  Aligned_cols=66  Identities=24%  Similarity=0.310  Sum_probs=51.6

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHh
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p---~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+.||...+++++.+..        .+..+|.|-+||||.+-+..+..++.   +...+|.|+++....+|+.|.-.
T Consensus       168 fyTP~~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l  236 (489)
T COG0286         168 FYTPREVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL  236 (489)
T ss_pred             cCChHHHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH
Confidence            46788888888776543        12347999999999998888877632   26799999999999999999754

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=92.41  E-value=0.17  Score=47.71  Aligned_cols=35  Identities=29%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      .++.++|||||++|-.+-.|+++   +++|+|||..+-
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l  244 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPM  244 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhc
Confidence            35678999999999999999886   469999997763

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=91.89  E-value=0.26  Score=43.83  Aligned_cols=45  Identities=20%  Similarity=0.210  Sum_probs=36.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++++||=||-|.|..+-.+.+.. +..+|++||+++..++.|++-.
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f  120 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYF  120 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHT
T ss_pred             CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhc
Confidence            45789999999999999998763 4579999999999999998753

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=91.87  E-value=0.099  Score=48.40  Aligned_cols=46  Identities=24%  Similarity=0.332  Sum_probs=39.5

Q ss_pred             CCcEEEeccCCcHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          196 DGFWVDLGTGSGAIAI-GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai-~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +..|+||..|-|++.+ .+.+. |+ ..|+|+|.+|.+++--++|++.|
T Consensus       195 ~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N  241 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEAN  241 (351)
T ss_pred             cchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhc
Confidence            4569999999999999 66664 33 69999999999999999999865

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=91.37  E-value=0.62  Score=44.59  Aligned_cols=40  Identities=20%  Similarity=0.129  Sum_probs=34.8

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ..++|+|.|-|.++-.++-.+  +..|+|||-|..+.+.|++
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            459999999999999999875  6899999999888777764

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=91.09  E-value=0.34  Score=43.60  Aligned_cols=41  Identities=27%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ..+||+||+|+|..|+.+|...  .++|+..|... .++.-+.|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~  127 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFN  127 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHh
Confidence            3469999999999999999864  58999999854 44444444

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=91.05  E-value=0.97  Score=41.25  Aligned_cols=67  Identities=24%  Similarity=0.278  Sum_probs=36.7

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +..+.|++.-...+ .......+.+|+=||+|. ..-+|.+++..++++.|+++|++++|++.|++=++
T Consensus       100 ~nY~~L~~lE~~~l-~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~  167 (276)
T PF03059_consen  100 PNYEKLVRLEYAAL-RIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA  167 (276)
T ss_dssp             HHHHHHHHHHHH-H-TT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Confidence            44555655444444 111111245899999994 44477777665567899999999999999987443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.98  E-value=0.43  Score=42.21  Aligned_cols=46  Identities=22%  Similarity=0.254  Sum_probs=35.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p-------~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+|+++|.|+|.++.-+...+..       ..+++.||+|+...+.-++++.
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~   71 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS   71 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence            368999999999999998887632       2489999999988877777653

; PDB: 4F3N_A 1ZKD_B.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=90.96  E-value=0.35  Score=42.25  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN  229 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS  229 (243)
                      ++.+|||+||-.|..+.-.-++.+|++.|.|||+-
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            35689999999999999888888899999999974

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=90.63  E-value=1.4  Score=39.26  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHH
Q 026108          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP----LAAAVAAF  238 (243)
Q Consensus       168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~----~AL~~Ar~  238 (243)
                      +++.|.  .--|...++.-+ ......++.+||-||..||.-.-.++...++++.|+|||.|+    +.+++|++
T Consensus        49 R~W~P~--RSKLaAai~~Gl-~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~  120 (229)
T PF01269_consen   49 RVWNPF--RSKLAAAILKGL-ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK  120 (229)
T ss_dssp             EEE-TT--T-HHHHHHHTT--S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             eecCch--hhHHHHHHHcCc-cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc
Confidence            355554  223444444333 212233467899999999999999999988789999999999    45566654

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=90.63  E-value=0.96  Score=41.36  Aligned_cols=43  Identities=19%  Similarity=0.235  Sum_probs=39.0

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++||=||-|.|..+-.+.++. +-.+++.|||+++.+++|++-.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l  120 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYL  120 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhc
Confidence            589999999999999999984 6789999999999999999743

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.46  E-value=0.37  Score=42.13  Aligned_cols=37  Identities=38%  Similarity=0.562  Sum_probs=32.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      ++.+|+|||+-.|-.+..+++..+++..|+|||+.|-
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~   81 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM   81 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc
Confidence            3568999999999999999999877677999999873

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=89.92  E-value=1.5  Score=40.67  Aligned_cols=60  Identities=27%  Similarity=0.417  Sum_probs=47.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |.+.+++.+ .   ..+++..+|.==|-|-.+-++...+++.+.++|+|.++.|++.|++....
T Consensus        11 Ll~E~i~~L-~---~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~   70 (314)
T COG0275          11 LLNEVVELL-A---PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE   70 (314)
T ss_pred             HHHHHHHhc-c---cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence            555666665 2   22457899999999999999999985567899999999999999987643

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=89.40  E-value=0.45  Score=43.50  Aligned_cols=37  Identities=19%  Similarity=0.069  Sum_probs=31.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA  233 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL  233 (243)
                      .+++|||||||+|.-+|.+...  ....|+..|.|.+-+
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVL  152 (282)
T ss_pred             cCceeEecCCcccccchhhhhh--ccceeeeEecchhhe
Confidence            5678999999999999999886  237999999998776

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=87.80  E-value=0.29  Score=47.29  Aligned_cols=45  Identities=24%  Similarity=0.209  Sum_probs=40.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +..|.|++||-|-+++.++++   +..|++=|.+++++++-+.|+..|
T Consensus       250 gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lN  294 (495)
T KOG2078|consen  250 GEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLN  294 (495)
T ss_pred             cchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhcccc
Confidence            456999999999999999986   489999999999999999998654

>PRK10458 DNA cytosine methylase; Provisional

Probab=87.08  E-value=2.9  Score=40.95  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..+++||+||.|-+.+.+-.. | .--|.++|+++.|.+.=+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHc
Confidence            458999999999999988653 2 346789999999999988884

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=87.08  E-value=1.1  Score=39.59  Aligned_cols=32  Identities=22%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             HHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHH
Q 026108          180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA  214 (243)
Q Consensus       180 v~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA  214 (243)
                      ++.+++|+ ...  .+...|.|+|||.+.||.++.
T Consensus        60 vd~iI~~l-~~~--~~~~viaD~GCGdA~la~~~~   91 (219)
T PF05148_consen   60 VDVIIEWL-KKR--PKSLVIADFGCGDAKLAKAVP   91 (219)
T ss_dssp             HHHHHHHH-CTS---TTS-EEEES-TT-HHHHH--
T ss_pred             HHHHHHHH-Hhc--CCCEEEEECCCchHHHHHhcc
Confidence            46666666 221  234579999999999997664

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=86.70  E-value=0.8  Score=43.03  Aligned_cols=43  Identities=23%  Similarity=0.346  Sum_probs=35.2

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..++|||||-|-=.+-.-+. |- ..++|+||.+..++.|++..+
T Consensus       119 ~~~~~LgCGKGGDLlKw~kA-gI-~~~igiDIAevSI~qa~~RYr  161 (389)
T KOG1975|consen  119 DDVLDLGCGKGGDLLKWDKA-GI-GEYIGIDIAEVSINQARKRYR  161 (389)
T ss_pred             cccceeccCCcccHhHhhhh-cc-cceEeeehhhccHHHHHHHHH
Confidence            45899999999887776654 23 589999999999999998654

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=86.40  E-value=4.1  Score=38.65  Aligned_cols=66  Identities=20%  Similarity=0.196  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHh---C----CCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---G----SKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~---~----p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      -|++..++++.+ ..........+++||.|.|.++--+.+..   .    ...++.-||+|++..+.-+++.+.
T Consensus        59 Gella~~~~~~w-q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          59 GELLAEQFLQLW-QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             HHHHHHHHHHHH-HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            455566666655 22233234579999999999987776643   1    246899999999988887777653

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=86.19  E-value=0.16  Score=45.00  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=34.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +.++||||.|.|-|+..++-.+   .+|+|.|.|..+...-++
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK  152 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence            4689999999999999999876   589999999998876543

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=85.81  E-value=1.1  Score=39.10  Aligned_cols=52  Identities=15%  Similarity=0.316  Sum_probs=34.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      +++++.+.+ ...   +..+++|+.||+|++++.++..   ..+|+.-|+++..+...+
T Consensus         8 l~~~I~~~i-p~~---~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen    8 LAKWIIELI-PKN---KHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWK   59 (260)
T ss_dssp             GHHHHHHHS--S----S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHc-CCC---CCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHH
Confidence            455566655 211   3568999999999999998763   369999999998887766

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.69  E-value=1.6  Score=40.99  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=38.7

Q ss_pred             CCCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       194 ~~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ..+.+||=+|+| .|-+++..|+.+|. .+|+.+|+++..|++|++
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK  212 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH
Confidence            356789999999 58889999999854 799999999999999997

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=85.64  E-value=0.99  Score=41.04  Aligned_cols=41  Identities=27%  Similarity=0.452  Sum_probs=27.8

Q ss_pred             cEEEeccCC---cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          198 FWVDLGTGS---GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       198 rVLDLGtGS---G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      .+||||||-   |.. -.+|++..|+++|+-||++|.++..++.-
T Consensus        71 QFLDlGsGlPT~~nv-HevAq~~~P~aRVVYVD~DPvv~ah~ral  114 (267)
T PF04672_consen   71 QFLDLGSGLPTAGNV-HEVAQRVAPDARVVYVDNDPVVLAHARAL  114 (267)
T ss_dssp             EEEEET--S--SS-H-HHHHHHH-TT-EEEEEESSHHHHHCCHHH
T ss_pred             eEEEcccCCCCCCCH-hHHHHhhCCCceEEEECCCchHHHHHHhh
Confidence            599999994   343 34555556999999999999999877764

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=85.43  E-value=0.89  Score=40.16  Aligned_cols=43  Identities=16%  Similarity=0.036  Sum_probs=32.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..+.||.|+|-|.++-.+....  -.+|..||.++..++.|++..
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l   98 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYL   98 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHT
T ss_pred             cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHh
Confidence            4689999999999997654432  259999999999999999754

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=83.10  E-value=1.8  Score=38.77  Aligned_cols=61  Identities=15%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      ..-+++|-.- -|...+.. . .  -..++..+||+|+-||-++-.+..+ |. .+|+|+|+.-.-+.
T Consensus        56 ~~~yVSRG~~-KL~~ale~-F-~--l~~k~kv~LDiGsSTGGFTd~lLq~-gA-k~VyavDVG~~Ql~  116 (245)
T COG1189          56 EQPYVSRGGL-KLEKALEE-F-E--LDVKGKVVLDIGSSTGGFTDVLLQR-GA-KHVYAVDVGYGQLH  116 (245)
T ss_pred             CcCccccHHH-HHHHHHHh-c-C--cCCCCCEEEEecCCCccHHHHHHHc-CC-cEEEEEEccCCccC
Confidence            5556666332 33333222 2 1  1335778999999999999998886 44 69999998764443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=82.75  E-value=1.6  Score=41.00  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=34.1

Q ss_pred             CCCcEEEecc-CCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGT-GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGt-GSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++.+|+=.|. |.|.+++-+|+..  +++|+++|+|++-++.|++=
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh
Confidence            3555555554 5788999999986  49999999999999998873

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=82.44  E-value=0.64  Score=35.06  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=5.9

Q ss_pred             EEeccCCcHHHHHHHHHhCCCc--EEEEEeCCHH
Q 026108          200 VDLGTGSGAIAIGIARVLGSKG--SIIAVDLNPL  231 (243)
Q Consensus       200 LDLGtGSG~iai~LA~~~~p~a--~V~avDiS~~  231 (243)
                      |++||..|..++.+++.+.++.  +++++|..+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~   34 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG   34 (106)
T ss_dssp             --------------------------EEEESS--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc
Confidence            6899999999988888663333  7999999994

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=82.37  E-value=2.4  Score=38.29  Aligned_cols=40  Identities=18%  Similarity=0.114  Sum_probs=34.4

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ..++|||||-|++.-.+-.+ + -.+++.+|.|-.+++.++.
T Consensus        74 p~a~diGcs~G~v~rhl~~e-~-vekli~~DtS~~M~~s~~~  113 (325)
T KOG2940|consen   74 PTAFDIGCSLGAVKRHLRGE-G-VEKLIMMDTSYDMIKSCRD  113 (325)
T ss_pred             cceeecccchhhhhHHHHhc-c-hhheeeeecchHHHHHhhc
Confidence            35999999999999988776 3 3689999999999998875

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=81.09  E-value=2.9  Score=40.48  Aligned_cols=51  Identities=22%  Similarity=0.203  Sum_probs=43.2

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +.++.||||+|+-.|-=+..+|......+.|+|-|.+..-+..-+.|+.++
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl  289 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL  289 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh
Confidence            446789999999999887777776655689999999999999999998764

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=80.58  E-value=4.3  Score=38.65  Aligned_cols=41  Identities=32%  Similarity=0.400  Sum_probs=31.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+||-| |++||-++.+... +| .+|+|||+|+.-+.+.+-
T Consensus        35 ~~d~vl~I-tSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleL   75 (380)
T PF11899_consen   35 PDDRVLTI-TSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLEL   75 (380)
T ss_pred             CCCeEEEE-ccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHH
Confidence            45679998 6778888888776 46 799999999977666543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.04  E-value=1.1  Score=38.35  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=44.1

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      |..|.|.-.++.-.    ....+.+||+||.| +|--++.+|... +...|..+|-++++++.-++-.
T Consensus        12 pseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~   74 (201)
T KOG3201|consen   12 PSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIR   74 (201)
T ss_pred             ccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHH
Confidence            55566655544321    12245789999999 555578888876 7789999999999998776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	5e-23
2b3t_A	276	Protein methyltransferase HEMK; translation termin	3e-22
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	1e-21
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	6e-21
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	4e-12
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	4e-09
3lpm_A	259	Putative methyltransferase; structural genomics, p	8e-08
2h00_A	254	Methyltransferase 10 domain containing protein; st	2e-07
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	2e-06
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	8e-06
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	9e-06
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	1e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	2e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-05
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	2e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	3e-05
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-05
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	4e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	5e-05
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	5e-05
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	6e-05
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	7e-05
3ocj_A	305	Putative exported protein; structural genomics, PS	8e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-04
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	2e-04
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	3e-04
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	4e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	8e-04

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 93.4 bits (233), Expect = 5e-23
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 8/103 (7%)

Query: 141 QRIEKRKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
           ++     P  Y++G  E    L   VEEGVF+PRPETE +V+L  +++ R          
Sbjct: 73  EKRASGYPLHYILGEKEFM-GLSFLVEEGVFVPRPETEELVELALELI-RKYGIKT---V 127

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            D+GTGSGAI + +A+   +     A D++  A  +A  NA+R
Sbjct: 128 ADIGTGSGAIGVSVAKFSDAIV--FATDVSSKAVEIARKNAER 168

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 91.4 bits (228), Expect = 3e-22
 Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
            R    +P  +L G   +  L L V     IPRP+TE +V+     L       R    +
Sbjct: 60  TRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL--PEQPCR---IL 114

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           DLGTG+GAIA+ +A        IIAVD  P A ++A  NAQ 
Sbjct: 115 DLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQH 155

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 88.8 bits (221), Expect = 1e-21
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
             R + R  +   +    +  L +       +  P +     +     +R  +       
Sbjct: 10  SNR-QARILYNKAIAKALF-GLDIEYHPKGLVTTPISRY---IFLKTFLRGGEVA----- 59

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           +++GTG  A+   +A        + A +++      A  N +R
Sbjct: 60  LEIGTGHTAMMALMAEKF-FNCKVTATEVDEEFFEYARRNIER 101

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 86.4 bits (215), Expect = 6e-21
 Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222
             V     IPRP+TE++V+     L R   G R    +D+GTGSG IA+ IA       S
Sbjct: 1   FEVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTR---VIDVGTGSGCIAVSIALAC-PGVS 56

Query: 223 IIAVDLNPLAAAVAAFNAQR 242
           + AVDL+  A AVA  NA+R
Sbjct: 57  VTAVDLSMDALAVARRNAER 76

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228
            + P  +T  ++D +        +GL     +DLGT +G I   + +    + ++++ DL
Sbjct: 3   WYEPGEDTYTLMDALER------EGLEMKIVLDLGTSTGVITEQLRK----RNTVVSTDL 52

Query: 229 NPLAAAVAAFNAQR 242
           N  A          
Sbjct: 53  NIRALESHRGGNLV 66

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLG 203
              K  + ++     + L    + GVF         VD  + +LV +    +D   +DLG
Sbjct: 9   SDVKIVEDILRG---KKLKFKTDSGVFSYG-----KVDKGTKILVENVVVDKDDDILDLG 60

Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            G G I I +A       S    D+N  A  +A  N + 
Sbjct: 61  CGYGVIGIALAD---EVKSTTMADINRRAIKLAKENIKL 96

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV 216
              +L +     VF    +  L+              +R G  +DL +G+G I + ++  
Sbjct: 18  LAENLRIIQSPSVFSFSIDAVLLAKFSYL-------PIRKGKIIDLCSGNGIIPLLLSTR 70

Query: 217 LGSKGSIIAVDLNPLAAAVAAFNAQR 242
             +K  I+ V++    A +A  +   
Sbjct: 71  --TKAKIVGVEIQERLADMAKRSVAY 94

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 156 EHWRDLVLSVEEGVFIPRPETE-LMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGI 213
           E +  L + +     IP        +  V D++   +          D+GTG+  I   +
Sbjct: 25  EDF-GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 83

Query: 214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
              L +    +A +++ +    A  N ++
Sbjct: 84  GATL-NGWYFLATEVDDMCFNYAKKNVEQ 111

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 137 GLWKQRIEKRKPF--QYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL 194
           GL+  R+EK+  F  +   G      L +    GVF         +D+ S +L+      
Sbjct: 141 GLYFGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRD-----GLDVGSQLLLSTLTPH 195

Query: 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
             G  +D+G G+G +++  AR    K  +   D++  A   +      
Sbjct: 196 TKGKVLDVGCGAGVLSVAFAR-HSPKIRLTLCDVSAPAVEASRATLAA 242

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           GL++G  V D+GTG+G     +++++G KG + A+D+       A     +
Sbjct: 34  GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            D+GTGSG +AI  A  LG+K S++A D++  +   A  NA  
Sbjct: 65  ADVGTGSGILAIA-AHKLGAK-SVLATDISDESMTAAEENAAL 105

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
            D  +     VF  R       D+ +   ++      +G  VDLG G+G I + +     
Sbjct: 191 TDWTIHNHANVF-SRTGL----DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP 245

Query: 219 SKGSIIAVDLNPLAAAVAAFNAQR 242
            +  ++ VD +P+A A +  N + 
Sbjct: 246 -QAKVVFVDESPMAVASSRLNVET 268

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           VD   G+G     +A ++G  G +   D+   A A        
Sbjct: 27  VDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD 69

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231
                  ++++ +D  +     +      D GTG+G +A G + +LG++ S+ A D++P 
Sbjct: 34  ASTAAYFLIEIYNDGNIGGRSVI------DAGTGNGILACG-SYLLGAE-SVTAFDIDPD 85

Query: 232 AAAVAAFNAQRI 243
           A   A  N   +
Sbjct: 86  AIETAKRNCGGV 97

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 200 VDLGTGSGAIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            DLG G+GA  + +A R+  ++  +   + +   A  A  + + 
Sbjct: 41  ADLGAGAGAAGMAVAARLEKAE--VTLYERSQEMAEFARRSLEL 82

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           +DLGTGSG +AI  A  LG K   + VD++P+    A  NA+R
Sbjct: 125 LDLGTGSGVLAIA-AEKLGGK--ALGVDIDPMVLPQAEANAKR 164

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 185 DVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
             LV     +     + D G G G + + +  +L        +D      A A    + 
Sbjct: 11  SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 171 IPRPETELMVDLVSDVLVR--------DNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKG 221
           +P    +++ D+  +VL +          DG  +G  V DLG G+G      ++++G  G
Sbjct: 50  VPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHG 109

Query: 222 SIIAVDLNPLAAAVAAFNAQR 242
            +I VD+      VA    + 
Sbjct: 110 KVIGVDMLDNQLEVARKYVEY 130

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            L        D+G GSG + + IA+       + A+D    A  V   N  +
Sbjct: 32  NLNKDDVVV-DVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAK 79

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           G+  G  +D+G+G GA++I +A+      SI A+D +     +A  N   
Sbjct: 41  GITAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIAD 88

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           +D+G+    + I + + +G     IA ++       A  N   
Sbjct: 26  LDVGSDHAYLPIFLLQ-MGYCDFAIAGEVVNGPYQSALKNVSE 67

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 5/43 (11%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            D+G+    +     +   +    IA ++       A    + 
Sbjct: 26  ADIGSDHAYLPCFAVK-NQTASFAIAGEVVDGPFQSAQKQVRS 67

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
                     D+G G+G + + +A        + A+D NP A +    N QR
Sbjct: 30  EPGKNDVAV-DVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQR 77

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 42.0 bits (98), Expect = 8e-05
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 1/93 (1%)

Query: 151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAI 209
            LV  +     +  +E   +   P      +            LR G  V  +  G  + 
Sbjct: 73  RLVTHQPGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSE 132

Query: 210 AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
            + +         ++ +D +P A   A   A  
Sbjct: 133 LLALDYSACPGVQLVGIDYDPEALDGATRLAAG 165

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
               G  V + G G GA  + +A+       I ++D++P +   A  N ++
Sbjct: 34  VYPPGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEK 83

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           +D+G+    + I +    G   S IA ++       A  N + 
Sbjct: 20  LDVGSDHAYLPIELVE-RGQIKSAIAGEVVEGPYQSAVKNVEA 61

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 160 DLVLSVEEGVFIPRP-ETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVL 217
           D +++++    I  P ++  +  ++          +++G  + D G GSGA+   +AR +
Sbjct: 84  DEIMNMKRRTQIVYPKDSSFIAMML---------DVKEGDRIIDTGVGSGAMCAVLARAV 134

Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQR 242
           GS G + A +     A +A  N  +
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTK 159

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241
            ++ G  + ++G G G ++  +A  +GS G +  +D+            Q
Sbjct: 40  QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQ 89

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
           D+G G+G   + +A  +   G I  +DL P    +   NA +
Sbjct: 52  DIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVK 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.93
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.91
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.5
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.48
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.42
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.41
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.37
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.3
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.29
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.29
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.28
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.23
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.16
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.13
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.13
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.11
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.11
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.11
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.09
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.06
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.05
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.04
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.04
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.04
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.01
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.98
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.98
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.96
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.94
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.94
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.93
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.92
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.91
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.9
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.88
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.87
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.86
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.85
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.85
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.85
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.84
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.84
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.84
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.84
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.84
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.83
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.83
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.83
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.81
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.81
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.8
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.8
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.8
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.79
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.79
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.79
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.78
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.78
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.77
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.76
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.75
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.74
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.74
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.74
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.73
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.73
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.73
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.72
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.72
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.72
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.72
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.72
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.71
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.71
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.7
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.7
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.7
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.7
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.7
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.7
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.69
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.69
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.69
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.68
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.67
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.67
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.67
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.67
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.66
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.65
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.65
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.64
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.64
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.64
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.64
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.63
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.63
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.63
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.63
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.62
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.62
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.62
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.61
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.61
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.61
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.61
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.6
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.6
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.6
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.6
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.59
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.59
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.58
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.58
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.57
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.57
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.56
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.56
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.56
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.55
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.55
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.55
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.53
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.53
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.53
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.52
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.52
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.52
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.52
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.52
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.52
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.51
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.51
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.51
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.5
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.5
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.5
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.5
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.5
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.5
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.49
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.49
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.49
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.48
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.48
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.47
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.47
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.47
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.45
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.45
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.45
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.45
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.45
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.45
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.44
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.44
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.44
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.44
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.43
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.43
2o07_A	304	Spermidine synthase; structural genomics, structur	98.43
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.42
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.42
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.41
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.41
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.4
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.4
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.4
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.4
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.39
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.39
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.39
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.39
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.38
3ocj_A	305	Putative exported protein; structural genomics, PS	98.38
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.38
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.37
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.37
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.37
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.37
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.37
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.37
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.37
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.36
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.36
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.36
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.36
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.35
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.35
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.35
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.35
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.34
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.34
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.34
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.33
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.33
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.33
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.32
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.32
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.32
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.31
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.31
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.31
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.3
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.3
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.29
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.29
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.29
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.29
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.29
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.28
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.28
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.28
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.27
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.27
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.27
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.26
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.26
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.25
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.25
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.23
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.22
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.21
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.21
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.2
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.2
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.2
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.19
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.18
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.18
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.18
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.16
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.16
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.16
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.15
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.13
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.12
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.1
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.08
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.06
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.05
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.04
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.04
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.04
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.04
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.03
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.01
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.99
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.99
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.98
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.98
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.95
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.91
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.86
3lkd_A	542	Type I restriction-modification system methyltrans	97.85
3khk_A	544	Type I restriction-modification system methylation	97.8
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.77
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.77
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.76
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.75
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.71
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.62
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.62
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.61
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.49
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.39
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.37
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.28
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.28
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.22
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.21
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.17
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.09
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.07
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.05
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.93
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.69
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.65
3ufb_A	530	Type I restriction-modification system methyltran	96.61
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.56
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.37
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.36
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.14
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.13
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.6
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	95.0
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	94.87
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	94.32
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	93.81
2oo3_A	283	Protein involved in catabolism of external DNA; st	93.81
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	93.37
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	93.3
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	93.01
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	92.21
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	90.82
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	90.38
3me5_A	482	Cytosine-specific methyltransferase; structural ge	90.05
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	89.87
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	89.66
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	89.24
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	89.23
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	88.23
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	88.08
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	87.83
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	86.9
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	86.86
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	86.04
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	85.06
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	83.81
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	83.55
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	83.0
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	82.65
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	82.22
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	81.23
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	80.78
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	80.05

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.93  E-value=1e-25  Score=201.24  Aligned_cols=155  Identities=26%  Similarity=0.296  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (243)
Q Consensus        65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~  144 (243)
                      ++.+|++|+.+++.++ ..        +   +..|+++|+++++++++..+.+...   .+..++.   +.+..+.+||.
T Consensus        15 ~~~~~~~~~~~~l~~~-~~--------~---~~~~a~~ll~~~~~~~~~~l~~~~~---~~~~~~~---~~~~~~~~~r~   76 (284)
T 1nv8_A           15 KIWSLIRDCSGKLEGV-TE--------T---SVLEVLLIVSRVLGIRKEDLFLKDL---GVSPTEE---KRILELVEKRA   76 (284)
T ss_dssp             CHHHHHHHHHHHTTTT-CS--------C---HHHHHHHHHHHHHTCCGGGGCCSSC---CCCHHHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhc-cC--------C---hHHHHHHHHHHHcCCCHHHHHhccc---cccccCH---HHHHHHHHHHH
Confidence            4889999999999654 21        1   3568999999999998876542110   0112222   44555566778


Q ss_pred             CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      +++|++|++|..+|+++.|.+++++|+|||+||.+++.+++++...    ++.+|||+|||+|++++.+++.  ++++|+
T Consensus        77 ~~~p~~yi~g~~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~----~~~~vLDlG~GsG~~~~~la~~--~~~~v~  150 (284)
T 1nv8_A           77 SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY----GIKTVADIGTGSGAIGVSVAKF--SDAIVF  150 (284)
T ss_dssp             TTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH----TCCEEEEESCTTSHHHHHHHHH--SSCEEE
T ss_pred             CCCCCeEEeeeeEECCeEEEeCCCceecChhHHHHHHHHHHHhccc----CCCEEEEEeCchhHHHHHHHHC--CCCEEE
Confidence            9999999999999999999999999999999999999999877211    2457999999999999999997  678999


Q ss_pred             EEeCCHHHHHHHHHHHHhC
Q 026108          225 AVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~~~  243 (243)
                      |+|+|++|+++|++|++++
T Consensus       151 ~vDis~~al~~A~~n~~~~  169 (284)
T 1nv8_A          151 ATDVSSKAVEIARKNAERH  169 (284)
T ss_dssp             EEESCHHHHHHHHHHHHHT
T ss_pred             EEECCHHHHHHHHHHHHHc
Confidence            9999999999999998753

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.91  E-value=2.6e-24  Score=189.42  Aligned_cols=154  Identities=28%  Similarity=0.296  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (243)
Q Consensus        65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~  144 (243)
                      ++.+|++|+.+.+  ++..           .+..||++|++++++.++..+..  .   .+..++.+..+.++.+.+|+.
T Consensus         2 ~~~~~~~~~~~~l--~~~~-----------~~~~~a~~ll~~~~~~~~~~l~~--~---~~~~~~~~~~~~~~~~~~~~~   63 (276)
T 2b3t_A            2 EYQHWLREAISQL--QASE-----------SPRRDAEILLEHVTGRGRTFILA--F---GETQLTDEQCQQLDALLTRRR   63 (276)
T ss_dssp             BHHHHHHHHHHTT--TTSS-----------CHHHHHHHHHHHHHTCCHHHHHH--T---TTCBCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHh--cCCC-----------CcHHHHHHHHHHHhCCCHHHHHh--c---cCCCCCHHHHHHHHHHHHHHH
Confidence            4788999999887  2221           14678999999999998765432  1   112355555666677778888


Q ss_pred             CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      +++|++|++|..+||+..|.+++++|+|||+||.+++.+++.+ .    .++.+|||+|||+|++++.+++.+ ++.+|+
T Consensus        64 ~~~p~~~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~-~----~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~  137 (276)
T 2b3t_A           64 DGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL-P----EQPCRILDLGTGTGAIALALASER-PDCEII  137 (276)
T ss_dssp             TTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHS-C----SSCCEEEEETCTTSHHHHHHHHHC-TTSEEE
T ss_pred             cCCChhHeeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhc-c----cCCCEEEEecCCccHHHHHHHHhC-CCCEEE
Confidence            9999999999999999999999999999999999999998876 2    235689999999999999999886 788999


Q ss_pred             EEeCCHHHHHHHHHHHHh
Q 026108          225 AVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~~  242 (243)
                      |+|+|+.+++.|++|+++
T Consensus       138 ~vD~s~~~l~~a~~n~~~  155 (276)
T 2b3t_A          138 AVDRMPDAVSLAQRNAQH  155 (276)
T ss_dssp             EECSSHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHH
Confidence            999999999999999864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.50  E-value=8.3e-14  Score=130.83  Aligned_cols=92  Identities=21%  Similarity=0.212  Sum_probs=80.9

Q ss_pred             CCCceeEEeeecccc---ccccccCCCcccC--CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC
Q 026108          145 KRKPFQYLVGCEHWR---DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS  219 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~---~l~f~v~~~vliP--Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p  219 (243)
                      .++|++|+.|...|+   |+.|.+++++|++  ++.++.+++.+++++ .   ..++.+|||+|||+|.+++.+|+.   
T Consensus       235 ~~~~~~~l~g~~~~~~~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l-~---~~~~~~VLDlgcG~G~~~~~la~~---  307 (433)
T 1uwv_A          235 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL-D---VQPEDRVLDLFCGMGNFTLPLATQ---  307 (433)
T ss_dssp             SSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHH-T---CCTTCEEEEESCTTTTTHHHHHTT---
T ss_pred             CCCeEEEEeCCCcEEEECCEEEEECcccccccCHHHHHHHHHHHHHhh-c---CCCCCEEEECCCCCCHHHHHHHhh---
Confidence            678999999998888   9999999999999  578999999999887 2   223568999999999999999985   


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          220 KGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       220 ~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ..+|+|+|+|++|++.|++|++.+
T Consensus       308 ~~~V~gvD~s~~al~~A~~n~~~~  331 (433)
T 1uwv_A          308 AASVVGVEGVPALVEKGQQNARLN  331 (433)
T ss_dssp             SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHc
Confidence            379999999999999999999753

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.48  E-value=4.4e-14  Score=116.81  Aligned_cols=76  Identities=41%  Similarity=0.500  Sum_probs=55.4

Q ss_pred             cccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       163 f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |.+++++++|||+++.+++.+++.+ ..  ..++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+++.|++|++.
T Consensus         1 f~~~~~~~~p~~~~~~~~~~~~~~l-~~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~   76 (215)
T 4dzr_A            1 FEVGPDCLIPRPDTEVLVEEAIRFL-KR--MPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAER   76 (215)
T ss_dssp             CBCSGGGGSCCHHHHHHHHHHHHHH-TT--CCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------
T ss_pred             CcCCCCccCCCccHHHHHHHHHHHh-hh--cCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH
Confidence            6789999999999999999999887 22  1245789999999999999999985 788999999999999999999764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.42  E-value=5.8e-14  Score=124.25  Aligned_cols=87  Identities=13%  Similarity=0.067  Sum_probs=62.2

Q ss_pred             Hhhh---cCCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHH
Q 026108          140 KQRI---EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV  216 (243)
Q Consensus       140 ~~R~---~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~  216 (243)
                      ..|+   .+++|++|++|...|||..+.         |+++.+++.+.... .   ..++.+|||||||+|++++.+++.
T Consensus        34 ~~~~g~~~~~~~~~~i~g~~~~~g~~~~---------~~~~~l~~~l~~~~-~---~~~~~~vLDlG~G~G~~~~~~a~~  100 (281)
T 3bzb_A           34 QSPAGAPLQCSVQVQTTQEHPLWTSHVW---------SGARALADTLCWQP-E---LIAGKTVCELGAGAGLVSIVAFLA  100 (281)
T ss_dssp             ECCSSCC-CCEEEEECC--------------------CHHHHHHHHHHHCG-G---GTTTCEEEETTCTTSHHHHHHHHT
T ss_pred             HhhccccccCCeEEEECCCCCCCCceee---------cHHHHHHHHHHhcc-h---hcCCCeEEEecccccHHHHHHHHc
Confidence            3566   678899999999999987764         78999999887754 1   124568999999999999999985


Q ss_pred             hCCCcEEEEEeC-CHHHHHHHHHHHH
Q 026108          217 LGSKGSIIAVDL-NPLAAAVAAFNAQ  241 (243)
Q Consensus       217 ~~p~a~V~avDi-S~~AL~~Ar~Na~  241 (243)
                       + ..+|+|+|+ |+.+++.|++|++
T Consensus       101 -~-~~~v~~~D~s~~~~~~~a~~n~~  124 (281)
T 3bzb_A          101 -G-ADQVVATDYPDPEILNSLESNIR  124 (281)
T ss_dssp             -T-CSEEEEEECSCHHHHHHHHHHHH
T ss_pred             -C-CCEEEEEeCCCHHHHHHHHHHHH
Confidence             3 359999999 8999999999983

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.41  E-value=3.2e-13  Score=116.33  Aligned_cols=83  Identities=16%  Similarity=0.109  Sum_probs=68.5

Q ss_pred             cccccccccCCCcccCC----ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026108          157 HWRDLVLSVEEGVFIPR----PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA  232 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPR----p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~A  232 (243)
                      .|++..|.+.+++|+|+    ++++.+++.++..+ ... ..++.+|||+|||+|.+++.++... ++.+|+|+|+|+.+
T Consensus        25 ~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~-~~~-~~~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~  101 (254)
T 2h00_A           25 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ-DSD-KSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMC  101 (254)
T ss_dssp             HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCC-CGG-GCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHH
T ss_pred             HcCCeeeecCccccCCCccchHHHHHHHHHHHhhc-ccc-CCCCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHH
Confidence            56788999999999998    78888877776644 110 0135689999999999999999886 67899999999999


Q ss_pred             HHHHHHHHHh
Q 026108          233 AAVAAFNAQR  242 (243)
Q Consensus       233 L~~Ar~Na~~  242 (243)
                      ++.|++|++.
T Consensus       102 ~~~a~~~~~~  111 (254)
T 2h00_A          102 FNYAKKNVEQ  111 (254)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.37  E-value=3.1e-13  Score=118.08  Aligned_cols=89  Identities=16%  Similarity=-0.010  Sum_probs=64.3

Q ss_pred             HHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHH
Q 026108          135 LYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA  214 (243)
Q Consensus       135 ~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA  214 (243)
                      .+..+..++.+++|++|+++...||+..|..+..+++|++.                  .++.+|||+|||+|++++.+|
T Consensus        38 ~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~~------------------~~~~~vLDiG~G~G~~~i~la   99 (249)
T 3g89_A           38 RLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLW------------------QGPLRVLDLGTGAGFPGLPLK   99 (249)
T ss_dssp             HHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSCC------------------CSSCEEEEETCTTTTTHHHHH
T ss_pred             HHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhccccc------------------CCCCEEEEEcCCCCHHHHHHH
Confidence            33444456688999999999999998888777777776531                  134689999999999999999


Q ss_pred             HHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          215 RVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       215 ~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+ ++++|+|+|+|+++++.|++|+++
T Consensus       100 ~~~-~~~~v~~vD~s~~~~~~a~~~~~~  126 (249)
T 3g89_A          100 IVR-PELELVLVDATRKKVAFVERAIEV  126 (249)
T ss_dssp             HHC-TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            986 889999999999999999999875

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.30  E-value=1.1e-12  Score=125.09  Aligned_cols=99  Identities=14%  Similarity=0.129  Sum_probs=67.8

Q ss_pred             HHHHHhhhcCCCceeEEe----------eeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccC
Q 026108          136 YGLWKQRIEKRKPFQYLV----------GCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTG  205 (243)
Q Consensus       136 ~~~~~~R~~~~~Pl~yi~----------g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtG  205 (243)
                      +..+.+++.+++|++|++          +...|++..+. ++.++++++.++.+.+.+++.+ ..   .++.+|||+|||
T Consensus        94 ~~~ll~~~~~~~pl~~i~~~r~~~~~~~~~~~~y~~~~~-~~~~L~d~~~t~~~~~~il~~l-~~---~~~~~VLDiGcG  168 (480)
T 3b3j_A           94 FYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQ-QQNMMQDYVRTGTYQRAILQNH-TD---FKDKIVLDVGCG  168 (480)
T ss_dssp             --------------------------CCEEEEGGGCSCH-HHHHHHHHHHHHHHHHHHHHTG-GG---TTTCEEEEESCS
T ss_pred             HHHHHHHHHcCCcHHHHHhhhhhhhchhhHHHHHhhhcc-chhhhcChHhHHHHHHHHHHhh-hh---cCCCEEEEecCc
Confidence            344556677899999999          66677777666 8889999999999999888766 22   245689999999


Q ss_pred             CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       206 SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +|.+++.+|+.  +..+|+|+|+|+ +++.|++|++.
T Consensus       169 tG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~  202 (480)
T 3b3j_A          169 SGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKS  202 (480)
T ss_dssp             TTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHH
T ss_pred             ccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHH
Confidence            99999999884  457999999998 99999999875

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.29  E-value=1e-11  Score=100.95  Aligned_cols=80  Identities=23%  Similarity=0.257  Sum_probs=68.1

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|++..|.+.++. ++||.++.+.+.+.+++ ..  ..++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|
T Consensus        10 ~~~~~~~~~~~~~-~~rp~~~~~~~~~~~~l-~~--~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a   83 (187)
T 2fhp_A           10 EYGGRRLKALDGD-NTRPTTDKVKESIFNMI-GP--YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVI   83 (187)
T ss_dssp             TTTTCBCCCCCCC-SSCCCCHHHHHHHHHHH-CS--CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHH
T ss_pred             cccCccccCCCCC-CcCcCHHHHHHHHHHHH-Hh--hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHH
Confidence            6778999998876 89999999999998887 21  124568999999999999998884  457999999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|++.
T Consensus        84 ~~~~~~   89 (187)
T 2fhp_A           84 KENIAI   89 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.29  E-value=5.2e-12  Score=106.68  Aligned_cols=78  Identities=13%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             ccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       156 ~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      ..|++..|.+++++++|+++++.+.   +...     ..++.+|||+||| +|.+++.+++..  +.+|+|+|+|+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~p~~~~~~l~---~~~~-----~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~   93 (230)
T 3evz_A           24 KALFGLDIEYHPKGLVTTPISRYIF---LKTF-----LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFE   93 (230)
T ss_dssp             HHHHCCCCCCCTTSCCCCHHHHHHH---HHTT-----CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHH
T ss_pred             HHhcCCceecCCCeEeCCCchhhhH---hHhh-----cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHH
Confidence            3467889999999999999998773   1111     1145789999999 999999999974  589999999999999


Q ss_pred             HHHHHHHhC
Q 026108          235 VAAFNAQRI  243 (243)
Q Consensus       235 ~Ar~Na~~~  243 (243)
                      .|++|++.+
T Consensus        94 ~a~~~~~~~  102 (230)
T 3evz_A           94 YARRNIERN  102 (230)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998753

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.28  E-value=8.6e-12  Score=102.80  Aligned_cols=81  Identities=22%  Similarity=0.211  Sum_probs=63.7

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|.|..+.+.+  ..+||.++.+.+.+.+++... ...++.+|||+|||+|.+++.++..  +..+|+|+|+|+++++.|
T Consensus         9 ~~~g~~l~~~~--~~~rp~~~~~~~~l~~~l~~~-~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a   83 (189)
T 3p9n_A            9 VAGGRRIAVPP--RGTRPTTDRVRESLFNIVTAR-RDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVI   83 (189)
T ss_dssp             TTTTCEEECCS--CCC---CHHHHHHHHHHHHHH-SCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHH
T ss_pred             ccCCcEecCCC--CCCccCcHHHHHHHHHHHHhc-cCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHH
Confidence            46788888777  778999999999988887321 1135678999999999999988875  446999999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|++.
T Consensus        84 ~~~~~~   89 (189)
T 3p9n_A           84 ARNIEA   89 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.23  E-value=1e-11  Score=113.49  Aligned_cols=91  Identities=15%  Similarity=0.122  Sum_probs=74.7

Q ss_pred             cCCCceeEE-eeeccccccccccCCCcccCCcc----HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC
Q 026108          144 EKRKPFQYL-VGCEHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG  218 (243)
Q Consensus       144 ~~~~Pl~yi-~g~~~f~~l~f~v~~~vliPRp~----TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~  218 (243)
                      ..+.|.||| +++..|+|..|.++..+.+++++    +|+++...+..      ...+.+|||||||+|.+++.+++.. 
T Consensus        70 ~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~------~~~~~~VLdIG~G~G~~a~~la~~~-  142 (334)
T 1xj5_A           70 QGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCS------IPNPKKVLVIGGGDGGVLREVARHA-  142 (334)
T ss_dssp             EEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTT------SSCCCEEEEETCSSSHHHHHHTTCT-
T ss_pred             EeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhh------CCCCCEEEEECCCccHHHHHHHHcC-
Confidence            356899999 99999999999999999999876    55555432211      1235689999999999999999874 


Q ss_pred             CCcEEEEEeCCHHHHHHHHHHHH
Q 026108          219 SKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       219 p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +..+|++||+|+.++++|++|+.
T Consensus       143 ~~~~V~~VDis~~~l~~Ar~~~~  165 (334)
T 1xj5_A          143 SIEQIDMCEIDKMVVDVSKQFFP  165 (334)
T ss_dssp             TCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHH
Confidence            66899999999999999999975

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.16  E-value=4.5e-11  Score=104.55  Aligned_cols=94  Identities=20%  Similarity=0.174  Sum_probs=70.9

Q ss_pred             CceeEEeeeccccccccccCCC--cccCCccHHHHHHHHHHHh-----------hhcCCCCCCCcEEEeccCCcHHHHHH
Q 026108          147 KPFQYLVGCEHWRDLVLSVEEG--VFIPRPETELMVDLVSDVL-----------VRDNDGLRDGFWVDLGTGSGAIAIGI  213 (243)
Q Consensus       147 ~Pl~yi~g~~~f~~l~f~v~~~--vliPRp~TElLv~~v~~~l-----------~~~~~~~~~~rVLDLGtGSG~iai~L  213 (243)
                      .|..+++|.  ++|..|.+..+  ++++||+++.+.+.+....           .......++.+|||+|||+|.+++.+
T Consensus        53 ~~~~~i~g~--~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l  130 (277)
T 1o54_A           53 IDLNEVFEK--GPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVL  130 (277)
T ss_dssp             EEHHHHTTS--CTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHH
T ss_pred             EEHHHhcCC--CCCcEEEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHH
Confidence            455666665  35777888777  8899999998875432210           01112234568999999999999999


Q ss_pred             HHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       214 A~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.++++.+|+++|+|+.+++.|++|++.
T Consensus       131 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~  159 (277)
T 1o54_A          131 ARAVGSSGKVFAYEKREEFAKLAESNLTK  159 (277)
T ss_dssp             HHHTTTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHhCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            99855778999999999999999999864

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.13  E-value=6.2e-11  Score=94.69  Aligned_cols=78  Identities=27%  Similarity=0.327  Sum_probs=64.2

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|++..+.+.++   +||.++.+.+.+..++....  .++.+|||+|||+|.+++.+++. ++  +|+|+|+|+.+++.|
T Consensus         8 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~-~~--~v~~vD~~~~~~~~a   79 (171)
T 1ws6_A            8 KARGVALKVPAS---ARPSPVRLRKALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAASE-GW--EAVLVEKDPEAVRLL   79 (171)
T ss_dssp             GGTTCEECCCTT---CCCCCHHHHHHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHHT-TC--EEEEECCCHHHHHHH
T ss_pred             ccCCeEecCCCC---CCCCHHHHHHHHHHHHHhhc--cCCCeEEEeCCCcCHHHHHHHHC-CC--eEEEEeCCHHHHHHH
Confidence            467899999998   78888888888888772211  13568999999999999999986 33  599999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|++.
T Consensus        80 ~~~~~~   85 (171)
T 1ws6_A           80 KENVRR   85 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.13  E-value=1.3e-10  Score=96.36  Aligned_cols=68  Identities=21%  Similarity=0.243  Sum_probs=53.1

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ||+++.+++.+++.+. .....++.+|||+|||+|.+++.++..+ ++.+|+|+|+|+.+++.|++|++.
T Consensus        44 ~~~~~~~~~~~~~~l~-~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~  111 (207)
T 1jsx_A           44 RDPNEMLVRHILDSIV-VAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHE  111 (207)
T ss_dssp             ----CHHHHHHHHHHH-HGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhh-hhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            8888888888888762 2111135689999999999999999986 778999999999999999999864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.11  E-value=7.6e-11  Score=98.93  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             eeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeC
Q 026108          149 FQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL  228 (243)
Q Consensus       149 l~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDi  228 (243)
                      +.++.|  .|++..+.+.++ ..+||.++.+.+.+..++...   .++.+|||+|||+|.+++.++.. +. .+|+|+|+
T Consensus        14 ~~ii~g--~~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~---~~~~~vLDlgcG~G~~~~~l~~~-~~-~~V~~vD~   85 (202)
T 2fpo_A           14 IRIIGG--QWRGRKLPVPDS-PGLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSR-YA-AGATLIEM   85 (202)
T ss_dssp             EECCSG--GGTTCEEECCCC-------CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECS
T ss_pred             EEEEEE--EEcCcEecCCCC-CCCCCCHHHHHHHHHHHHHhh---cCCCeEEEeCCCcCHHHHHHHhc-CC-CEEEEEEC
Confidence            334444  467888887664 567899999988888877211   13468999999999999988775 22 59999999


Q ss_pred             CHHHHHHHHHHHHh
Q 026108          229 NPLAAAVAAFNAQR  242 (243)
Q Consensus       229 S~~AL~~Ar~Na~~  242 (243)
                      |+.+++.|++|++.
T Consensus        86 s~~~l~~a~~~~~~   99 (202)
T 2fpo_A           86 DRAVSQQLIKNLAT   99 (202)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999865

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.11  E-value=1.6e-10  Score=93.64  Aligned_cols=71  Identities=23%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +...++||.++.+.+.+.+++ ..  ..++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|++|++.
T Consensus         6 p~~~~~rp~~~~~~~~~~~~l-~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~   76 (177)
T 2esr_A            6 LDGKITRPTSDKVRGAIFNMI-GP--YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIM   76 (177)
T ss_dssp             ------------CHHHHHHHH-CS--CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCcCHHHHHHHHHHHH-Hh--hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHH
Confidence            455778999999999998887 21  224578999999999999999986  447999999999999999999864

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.11  E-value=9.4e-11  Score=106.18  Aligned_cols=91  Identities=14%  Similarity=0.173  Sum_probs=72.8

Q ss_pred             CCCceeEEeee-ccccccccccCCCcccCCcc----HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC
Q 026108          145 KRKPFQYLVGC-EHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS  219 (243)
Q Consensus       145 ~~~Pl~yi~g~-~~f~~l~f~v~~~vliPRp~----TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p  219 (243)
                      .+-|.|||.+. ..++|..+.++..+.+|+++    +|.++...+...      ..+.+|||+|||+|.+++.+++.. +
T Consensus        67 ~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~-~  139 (321)
T 2pt6_A           67 TKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVS------KEPKNVLVVGGGDGGIIRELCKYK-S  139 (321)
T ss_dssp             EECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTCT-T
T ss_pred             EECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcC------CCCCEEEEEcCCccHHHHHHHHcC-C
Confidence            45789999886 36778999999999999988    565554332211      134689999999999999999864 5


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHh
Q 026108          220 KGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       220 ~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+|+++|+|+++++.|++|+..
T Consensus       140 ~~~v~~vDis~~~l~~ar~~~~~  162 (321)
T 2pt6_A          140 VENIDICEIDETVIEVSKIYFKN  162 (321)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHh
Confidence            68999999999999999999753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.09  E-value=9.8e-11  Score=98.38  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             ccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       160 ~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ...+...+.+++|+|++. ..++. ..+ .    .++.+|||||||+|.+++.+|+.. |+.+|+|+|+|+.+++.|++|
T Consensus        13 ~~~~~~~~~~~~~~p~~~-~~~~~-~~f-~----~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~   84 (214)
T 1yzh_A           13 TELLEANPQYVVLNPLEA-KAKWR-DLF-G----NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDK   84 (214)
T ss_dssp             HHHHHTCTTTEECCGGGT-TTTHH-HHH-T----SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHhCCCEEecChhhc-ccCHH-HHc-C----CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHH
Confidence            344556678889998762 22222 223 1    135689999999999999999985 789999999999999999999


Q ss_pred             HHh
Q 026108          240 AQR  242 (243)
Q Consensus       240 a~~  242 (243)
                      ++.
T Consensus        85 ~~~   87 (214)
T 1yzh_A           85 VLE   87 (214)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.06  E-value=1.5e-10  Score=97.08  Aligned_cols=80  Identities=19%  Similarity=0.187  Sum_probs=57.1

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|.|..+.+.++ ...||.++.+.+.+.+++...   .++.+|||+|||+|.+++.++.. +. .+|+|+|+|+++++.|
T Consensus        19 ~~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~---~~~~~vLDlGcGtG~~~~~~~~~-~~-~~v~gvD~s~~~l~~a   92 (201)
T 2ift_A           19 LWRGRKLPVLNS-EGLRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSR-QA-KKVTFLELDKTVANQL   92 (201)
T ss_dssp             TTTTCEEECC----------CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHH
T ss_pred             eeCCcEecCCCC-CCcCcCHHHHHHHHHHHHHHh---cCCCeEEEcCCccCHHHHHHHHc-cC-CEEEEEECCHHHHHHH
Confidence            567888887665 456888888888887776221   13468999999999999987775 23 6999999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|++.
T Consensus        93 ~~~~~~   98 (201)
T 2ift_A           93 KKNLQT   98 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.05  E-value=1.7e-10  Score=100.22  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=43.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||||++++.+|+. ++..+|+|+|+++.|++.|++|+++|
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~   62 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAH   62 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999999997 47789999999999999999999865

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.04  E-value=2.5e-10  Score=96.62  Aligned_cols=73  Identities=18%  Similarity=0.260  Sum_probs=55.5

Q ss_pred             ccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          162 VLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       162 ~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+.-.+.+++++|++ ...++. ... .    .++.+|||||||+|.+++.+|+.. |+.+|+|+|+|+.+++.|++|++
T Consensus        12 ~~~~~~~~~~~~~~~-~~~~~~-~~f-~----~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~   83 (213)
T 2fca_A           12 FLAENADIAISNPAD-YKGKWN-TVF-G----NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVK   83 (213)
T ss_dssp             HHHHTTTTBCSCGGG-GTTCHH-HHH-T----SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHhCccEEecCccc-cCCCHH-HHc-C----CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHH
Confidence            334456777888765 323332 222 1    134679999999999999999985 88999999999999999999986


Q ss_pred             h
Q 026108          242 R  242 (243)
Q Consensus       242 ~  242 (243)
                      +
T Consensus        84 ~   84 (213)
T 2fca_A           84 D   84 (213)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.04  E-value=2.1e-10  Score=100.11  Aligned_cols=48  Identities=17%  Similarity=0.115  Sum_probs=43.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|+|+|||||++++++|+. ++..+|+|+|+++.|++.|++|++++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~   68 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEH   68 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999999997 47779999999999999999999864

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.04  E-value=2e-10  Score=101.04  Aligned_cols=48  Identities=10%  Similarity=0.022  Sum_probs=43.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|++++++|+. ++..+|+|+|+++.|++.|++|++++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~   68 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSS   68 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999999997 47779999999999999999999864

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.01  E-value=4e-10  Score=92.05  Aligned_cols=58  Identities=26%  Similarity=0.401  Sum_probs=48.3

Q ss_pred             CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (243)
Q Consensus       168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~  235 (243)
                      .|++|||+++.+++.+ +..     ..++.+|||+|||+|.+++.+++.   . +|+|+|+|+.+++.
T Consensus         2 ~v~~P~~~~~~l~~~l-~~~-----~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~   59 (170)
T 3q87_B            2 DWYEPGEDTYTLMDAL-ERE-----GLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES   59 (170)
T ss_dssp             CSCCCCHHHHHHHHHH-HHH-----TCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT
T ss_pred             cccCcCccHHHHHHHH-Hhh-----cCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc
Confidence            5899999999999984 332     013568999999999999999885   2 99999999999975

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.98  E-value=1.4e-09  Score=99.83  Aligned_cols=75  Identities=20%  Similarity=0.341  Sum_probs=62.2

Q ss_pred             cccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       161 l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +.|.++++.|++-  ..++.+++.+.+++ ..    .+.+|||+|||+|.+++.+|+..   .+|+|+|+|++|++.|++
T Consensus       182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~-~~----~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~  253 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAAMNIQMLEWALDVT-KG----SKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQY  253 (369)
T ss_dssp             CEEEEETTSCCCSBHHHHHHHHHHHHHHT-TT----CCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHH
T ss_pred             EEEEECCCCeecCCHHHHHHHHHHHHHHh-hc----CCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHH
Confidence            5677889999975  55688888888876 21    24579999999999999999752   699999999999999999


Q ss_pred             HHHhC
Q 026108          239 NAQRI  243 (243)
Q Consensus       239 Na~~~  243 (243)
                      |++.|
T Consensus       254 n~~~n  258 (369)
T 3bt7_A          254 NIAAN  258 (369)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99764

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.98  E-value=2.6e-09  Score=92.88  Aligned_cols=101  Identities=28%  Similarity=0.466  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHhhhcCCCcee----EEeee---ccccccccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCCcEE
Q 026108          131 GLDELYGLWKQRIEKRKPFQ----YLVGC---EHWRDLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV  200 (243)
Q Consensus       131 ~~~~~~~~~~~R~~~~~Pl~----yi~g~---~~f~~l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~rVL  200 (243)
                      +.++|.+.|++..   .|+.    .+...   ....+..+.++|+..+.   ++.+.++.+.+...+      .++.+||
T Consensus        55 ~~~dw~~~~~~~~---~p~~~~~~~i~~~w~~~~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~------~~~~~VL  125 (254)
T 2nxc_A           55 GDEDWLEAWRRDL---KPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL------RPGDKVL  125 (254)
T ss_dssp             CHHHHHHHHHHHC---CCEEETTEEEECTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHC------CTTCEEE
T ss_pred             ChhHHHHHHHhhC---CCEEEecEEEeCCCCCCCCCceEEEECCCccccCCCCHHHHHHHHHHHHhc------CCCCEEE
Confidence            4478888998776   3442    22221   01234457778887664   466777766655433      1356899


Q ss_pred             EeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       201 DLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      |+|||+|.+++.+++. +  .+|+|+|+|+.+++.|++|++.+
T Consensus       126 DiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~  165 (254)
T 2nxc_A          126 DLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRN  165 (254)
T ss_dssp             EETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHT
T ss_pred             EecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHc
Confidence            9999999999999885 3  39999999999999999998753

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.96  E-value=1.3e-09  Score=101.06  Aligned_cols=78  Identities=22%  Similarity=0.374  Sum_probs=64.7

Q ss_pred             cccccCCCccc---CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          161 LVLSVEEGVFI---PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       161 l~f~v~~~vli---PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      +.|...+++|.   +++.++.+.+.+.+.+ .. ...++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|+
T Consensus       198 ~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l-~~-~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~  272 (381)
T 3dmg_A          198 YTFHHLPGVFSAGKVDPASLLLLEALQERL-GP-EGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQ  272 (381)
T ss_dssp             EEEEECTTCTTTTSCCHHHHHHHHHHHHHH-CT-TTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHH
T ss_pred             EEEEeCCCceeCCCCCHHHHHHHHHHHHhh-cc-cCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHH
Confidence            46788999999   5689999999887765 11 1224568999999999999999986   379999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +|++.+
T Consensus       273 ~n~~~~  278 (381)
T 3dmg_A          273 KGLEAN  278 (381)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            998753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.94  E-value=1.7e-09  Score=95.22  Aligned_cols=76  Identities=16%  Similarity=0.091  Sum_probs=60.5

Q ss_pred             cccccccCCCc--ccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          159 RDLVLSVEEGV--FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       159 ~~l~f~v~~~v--liPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|..|.++++.  +.++..+|.+..  ...+      .++.+|||+|||+|.+++.+|+.. +..+|+|+|+|+.|++.|
T Consensus        89 ~g~~f~~~~~~~f~~~~~~~e~~~~--~~~~------~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a  159 (272)
T 3a27_A           89 YGCLFKLDVAKIMWSQGNIEERKRM--AFIS------NENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYL  159 (272)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHH--HTSC------CTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHH
T ss_pred             CCEEEEEechhEEECCCchHHHHHH--HHhc------CCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHH
Confidence            57889999888  566766666542  2222      245689999999999999999985 567999999999999999


Q ss_pred             HHHHHhC
Q 026108          237 AFNAQRI  243 (243)
Q Consensus       237 r~Na~~~  243 (243)
                      ++|++.+
T Consensus       160 ~~n~~~n  166 (272)
T 3a27_A          160 CENIKLN  166 (272)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999764

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.94  E-value=6.6e-10  Score=102.16  Aligned_cols=73  Identities=23%  Similarity=0.392  Sum_probs=55.1

Q ss_pred             cccCCccHHHHHHHHHHHhhhcC---------CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDN---------DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~---------~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ..+|+++++.+.+.....+..-.         ...++.+|||+|||+|.+++.+++.++++.+|+|+|+|+.+++.|++|
T Consensus        48 ~~~p~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~  127 (383)
T 4fsd_A           48 AAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKY  127 (383)
T ss_dssp             --CCHHHHHHHHTSCHHHHHHCCSCCCCCSCGGGGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHhhHHHHHHhcCCCCccccccCCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            37889999888763322221100         022467899999999999999999876778999999999999999998


Q ss_pred             HH
Q 026108          240 AQ  241 (243)
Q Consensus       240 a~  241 (243)
                      ++
T Consensus       128 ~~  129 (383)
T 4fsd_A          128 VE  129 (383)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.93  E-value=1.8e-09  Score=92.35  Aligned_cols=71  Identities=14%  Similarity=0.071  Sum_probs=53.8

Q ss_pred             cCCccHHHHHHHHHHHhhhcC--CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          171 IPRPETELMVDLVSDVLVRDN--DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       171 iPRp~TElLv~~v~~~l~~~~--~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+++..+.+.+.+.+.+....  ...++.+|||+|||+|.+++.+|... ++.+|+|+|+|+++++.|++|+++
T Consensus        44 ~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~  116 (240)
T 1xdz_A           44 SITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEA  116 (240)
T ss_dssp             SCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            356667777766665441110  11135689999999999999999864 778999999999999999999864

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.92  E-value=3.4e-09  Score=93.10  Aligned_cols=48  Identities=23%  Similarity=0.273  Sum_probs=42.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~-p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||||||+|.+++.+++.++ ++++|+|||+|+.+|+.|++|++.
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~  118 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA  118 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            467899999999999999998752 467999999999999999999764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.91  E-value=2.2e-09  Score=91.68  Aligned_cols=62  Identities=15%  Similarity=0.027  Sum_probs=52.0

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |.-+.+.+.+..++    +  ...+|||||||+|-+++.++... |+++|+|+|+|+.|+++|++|+++
T Consensus        34 p~ld~fY~~~~~~l----~--~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~   95 (200)
T 3fzg_A           34 ATLNDFYTYVFGNI----K--HVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGK   95 (200)
T ss_dssp             GGHHHHHHHHHHHS----C--CCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHhhc----C--CCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHh
Confidence            55556666666665    1  35689999999999999999874 889999999999999999999975

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.90  E-value=6.5e-09  Score=83.34  Aligned_cols=62  Identities=26%  Similarity=0.267  Sum_probs=50.8

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.++.+.+.+...+ .   ..++.+|||+|||+|.+++.+++   ++.+|+|+|+|+.+++.|++|++.
T Consensus        18 ~~~~~~~~~~~~~~-~---~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~   79 (183)
T 2yxd_A           18 ITKEEIRAVSIGKL-N---LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAK   79 (183)
T ss_dssp             CCCHHHHHHHHHHH-C---CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHc-C---CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHH
Confidence            55666777777766 2   22456899999999999999987   358999999999999999999864

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.88  E-value=6.2e-09  Score=84.08  Aligned_cols=85  Identities=25%  Similarity=0.273  Sum_probs=60.6

Q ss_pred             CceeEEeeeccccccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEE
Q 026108          147 KPFQYLVGCEHWRDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI  223 (243)
Q Consensus       147 ~Pl~yi~g~~~f~~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V  223 (243)
                      ....++.+...-..+.+...++++.|+   ..++.+++    .+ .   ..++.+|||+|||+|.+++.+++.   +.+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~-~---~~~~~~vLdiG~G~G~~~~~~~~~---~~~v   77 (194)
T 1dus_A            9 SDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVE----NV-V---VDKDDDILDLGCGYGVIGIALADE---VKST   77 (194)
T ss_dssp             CCEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHH----HC-C---CCTTCEEEEETCTTSHHHHHHGGG---SSEE
T ss_pred             ccccEEeeecCCCceEEEeCCCcCCccccchHHHHHHH----Hc-c---cCCCCeEEEeCCCCCHHHHHHHHc---CCeE
Confidence            334555553322334556678888887   34444443    33 1   124568999999999999999885   4799


Q ss_pred             EEEeCCHHHHHHHHHHHHh
Q 026108          224 IAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       224 ~avDiS~~AL~~Ar~Na~~  242 (243)
                      +|+|+|+.+++.|++|++.
T Consensus        78 ~~~D~~~~~~~~a~~~~~~   96 (194)
T 1dus_A           78 TMADINRRAIKLAKENIKL   96 (194)
T ss_dssp             EEEESCHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHH
Confidence            9999999999999999864

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.87  E-value=3.1e-09  Score=98.16  Aligned_cols=74  Identities=24%  Similarity=0.372  Sum_probs=58.1

Q ss_pred             ccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       160 ~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      ++.+...+++|.+.   ..++++    ++++    ....+.+|||+|||+|.+++.+++.. |+.+|+|+|+|+.+++.|
T Consensus       192 ~~~~~~~pg~Fs~~~~d~~~~~l----l~~l----~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~A  262 (375)
T 4dcm_A          192 DWTIHNHANVFSRTGLDIGARFF----MQHL----PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS  262 (375)
T ss_dssp             TEEEEECTTCTTCSSCCHHHHHH----HHTC----CCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHH
T ss_pred             ceEEEeCCCcccCCcccHHHHHH----HHhC----cccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHH
Confidence            45677789999984   333344    3333    11234689999999999999999985 789999999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|++.
T Consensus       263 r~n~~~  268 (375)
T 4dcm_A          263 RLNVET  268 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.86  E-value=7.3e-09  Score=85.92  Aligned_cols=47  Identities=26%  Similarity=0.422  Sum_probs=42.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.. +..+|+|+|+|+++++.|++|+++
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~   86 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKK   86 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            45789999999999999999984 788999999999999999999864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.85  E-value=2.9e-09  Score=89.86  Aligned_cols=62  Identities=21%  Similarity=0.307  Sum_probs=49.9

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++..++..+....       ++.+|||+|||+|..++.+|+.++++++|+++|+|+.+++.|++|+++
T Consensus        44 ~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  105 (221)
T 3u81_A           44 DAKGQIMDAVIREY-------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF  105 (221)
T ss_dssp             HHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-------CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHH
Confidence            55555555555433       346899999999999999999764578999999999999999999864

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.85  E-value=6.4e-09  Score=83.53  Aligned_cols=47  Identities=23%  Similarity=0.261  Sum_probs=42.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+.+++.|++|++.
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~   71 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAIN   71 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHH
Confidence            45689999999999999999986 779999999999999999999865

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.85  E-value=4.7e-09  Score=85.50  Aligned_cols=45  Identities=18%  Similarity=0.181  Sum_probs=40.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+|+.   +.+|+|+|+|+++++.|++|++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~   66 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSD   66 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHH
Confidence            4678999999999999999985   47999999999999999999864

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.84  E-value=4.7e-09  Score=90.17  Aligned_cols=47  Identities=26%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHH--hCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARV--LGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~--~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.++..  . ++.+|+|+|+|+.+++.|++|+..
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~   99 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLAL   99 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHH
Confidence            3568999999999999999987  4 567999999999999999999864

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.84  E-value=6.1e-09  Score=87.08  Aligned_cols=65  Identities=18%  Similarity=0.178  Sum_probs=52.1

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      |.+..+...+.+.+.+ ...   ++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++|++
T Consensus        10 p~~~~~~~~~~l~~~l-~~~---~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~   74 (217)
T 3jwh_A           10 PISLNQQRMNGVVAAL-KQS---NARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLD   74 (217)
T ss_dssp             -CCHHHHHHHHHHHHH-HHT---TCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHH-Hhc---CCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHH
Confidence            4456666677777766 221   35689999999999999999974 66899999999999999999975

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.84  E-value=9.9e-09  Score=96.46  Aligned_cols=85  Identities=21%  Similarity=0.226  Sum_probs=67.5

Q ss_pred             ceeEEeeec----cccccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCc
Q 026108          148 PFQYLVGCE----HWRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG  221 (243)
Q Consensus       148 Pl~yi~g~~----~f~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a  221 (243)
                      ....+.|..    .+.|+.|.++++.|++.  ..++.+.+.+.+ + .     ++.+|||+|||+|.+++.+|+.   ..
T Consensus       244 ~~~~l~G~~~i~e~~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~-~-----~~~~VLDlgcG~G~~sl~la~~---~~  313 (425)
T 2jjq_A          244 DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-L-V-----EGEKILDMYSGVGTFGIYLAKR---GF  313 (425)
T ss_dssp             EEEEEEECSCEEEEETTEEEEECTTSCCCSBHHHHHHHHHHHHH-H-C-----CSSEEEEETCTTTHHHHHHHHT---TC
T ss_pred             eEEEEECCCeEEEEECCEEEEEccccccccCHHHHHHHHHHhhc-c-C-----CCCEEEEeeccchHHHHHHHHc---CC
Confidence            334455543    34688999999999974  567777777766 4 1     3468999999999999999985   36


Q ss_pred             EEEEEeCCHHHHHHHHHHHHh
Q 026108          222 SIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       222 ~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +|+|+|+|++|++.|++|++.
T Consensus       314 ~V~gvD~s~~ai~~A~~n~~~  334 (425)
T 2jjq_A          314 NVKGFDSNEFAIEMARRNVEI  334 (425)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHH
Confidence            999999999999999999874

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.84  E-value=5.4e-09  Score=90.53  Aligned_cols=83  Identities=20%  Similarity=0.278  Sum_probs=60.8

Q ss_pred             CCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCC-CCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       146 ~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~-~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      ++.+.++.+.    ++.+..++..+-+..++.++..+    +    ... ++.+|||+|||+|.+++.+|... + .+|+
T Consensus        11 ~e~~d~~~~~----~~~i~q~~~~~~~~~d~~ll~~~----~----~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~   76 (259)
T 3lpm_A           11 DERLDYLLAE----NLRIIQSPSVFSFSIDAVLLAKF----S----YLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIV   76 (259)
T ss_dssp             TCEEEEETTT----TEEEEEBTTTBCCCHHHHHHHHH----C----CCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEE
T ss_pred             CCeeccccCC----CEEEEeCCCCccCcHHHHHHHHH----h----cCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEE
Confidence            4455555442    45566677777766665554433    2    112 35689999999999999999873 4 4999


Q ss_pred             EEeCCHHHHHHHHHHHHh
Q 026108          225 AVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~~  242 (243)
                      |+|+++.+++.|++|++.
T Consensus        77 gvDi~~~~~~~a~~n~~~   94 (259)
T 3lpm_A           77 GVEIQERLADMAKRSVAY   94 (259)
T ss_dssp             EECCSHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHH
Confidence            999999999999999875

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.84  E-value=7.8e-09  Score=88.39  Aligned_cols=67  Identities=12%  Similarity=0.126  Sum_probs=53.9

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..|++..+...+....    +..++.+|||+|||+|..++.+|+.++++++|+++|+|+++++.|++|+++
T Consensus        37 i~~~~~~~l~~l~~~~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  103 (221)
T 3dr5_A           37 PDEMTGQLLTTLAATT----NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE  103 (221)
T ss_dssp             CCHHHHHHHHHHHHHS----CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh----CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            4577777777666543    111234899999999999999999875578999999999999999999875

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.83  E-value=9.2e-09  Score=95.10  Aligned_cols=75  Identities=12%  Similarity=0.027  Sum_probs=55.9

Q ss_pred             cccccccCCC-----cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026108          159 RDLVLSVEEG-----VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA  233 (243)
Q Consensus       159 ~~l~f~v~~~-----vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL  233 (243)
                      .|+.|.+++.     .|++  ++......+..++      .++.+|||+|||+|.+++.+|+. + ..+|+|||+|+.|+
T Consensus       179 ~g~~f~v~~~~~~~t~ff~--~~~~~~~~~~~~~------~~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~~al  248 (385)
T 2b78_A          179 NGISYNVFLNDGLMTGIFL--DQRQVRNELINGS------AAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKRSR  248 (385)
T ss_dssp             TTEEEEECSSSSSCCSSCG--GGHHHHHHHHHTT------TBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTTHH
T ss_pred             CCEEEEEeccccccCCcCC--cHHHHHHHHHHHh------cCCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCHHHH
Confidence            5788988887     6663  3333333333332      13568999999999999999985 2 24999999999999


Q ss_pred             HHHHHHHHhC
Q 026108          234 AVAAFNAQRI  243 (243)
Q Consensus       234 ~~Ar~Na~~~  243 (243)
                      +.|++|++.|
T Consensus       249 ~~A~~N~~~n  258 (385)
T 2b78_A          249 ALSLAHFEAN  258 (385)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999999764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.83  E-value=5.4e-09  Score=85.96  Aligned_cols=48  Identities=21%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.++++++|+|+|+|+.+++.|++|++.
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   69 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD   69 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            456899999999999999999875667999999999999999999865

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.83  E-value=5.4e-09  Score=89.21  Aligned_cols=46  Identities=13%  Similarity=0.285  Sum_probs=42.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||||||+|.+++.+|+.. |+.+|+|||+|+.+++.|++|+++
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~   80 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHE   80 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHH
Confidence            4579999999999999999985 889999999999999999999864

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.81  E-value=1.6e-08  Score=86.17  Aligned_cols=65  Identities=29%  Similarity=0.244  Sum_probs=52.6

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+|.++..++.++..+ .   ..++.+|||+|||+|.+++.+++.+  +.+|+|+|+|+.+++.|++|++.
T Consensus        17 ~~~~~~~~~~~l~~~~-~---~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~   81 (256)
T 1nkv_A           17 HNPFTEEKYATLGRVL-R---MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEE   81 (256)
T ss_dssp             SSSCCHHHHHHHHHHT-C---CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhc-C---CCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHh
Confidence            4466666777777665 1   2245789999999999999999975  47999999999999999999864

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.81  E-value=1.3e-08  Score=85.71  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=60.5

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC----CCcEEEEEeCCHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLA  232 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~----p~a~V~avDiS~~A  232 (243)
                      .|++..+.+..+..++.|...   ..+++.+ .. ...++.+|||+|||+|.+++.+++..+    ++.+|+++|+|+.+
T Consensus        47 ~y~d~~~~~~~~~~~~~p~~~---~~~~~~l-~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~  121 (227)
T 2pbf_A           47 PYIDTPVYISHGVTISAPHMH---ALSLKRL-IN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDL  121 (227)
T ss_dssp             TTSSSCEEEETTEEECCHHHH---HHHHHHH-TT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHH
T ss_pred             cCCCCccccCCCCccCChHHH---HHHHHHH-Hh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHH
Confidence            556777777777777776543   3344444 11 122457899999999999999999864    45799999999999


Q ss_pred             HHHHHHHHHh
Q 026108          233 AAVAAFNAQR  242 (243)
Q Consensus       233 L~~Ar~Na~~  242 (243)
                      ++.|++|++.
T Consensus       122 ~~~a~~~~~~  131 (227)
T 2pbf_A          122 VNFSLENIKR  131 (227)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999754

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.80  E-value=1.1e-08  Score=93.06  Aligned_cols=78  Identities=15%  Similarity=0.033  Sum_probs=58.6

Q ss_pred             cccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108          159 RDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (243)
Q Consensus       159 ~~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~  235 (243)
                      .|..|.+++..+...   ++++...+.+.+.+ ..  ..++.+|||+|||+|.+++.+|+.   +++|++||+|+.|++.
T Consensus       117 ~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~-~~--~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~  190 (332)
T 2igt_A          117 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAV-ET--ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGW  190 (332)
T ss_dssp             TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHH-HH--SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred             CCEEEEEecCccccceechHHHHHHHHHHHHH-Hh--cCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHH
Confidence            356666666554442   57777666666665 21  113468999999999999999985   3599999999999999


Q ss_pred             HHHHHHh
Q 026108          236 AAFNAQR  242 (243)
Q Consensus       236 Ar~Na~~  242 (243)
                      |++|++.
T Consensus       191 a~~n~~~  197 (332)
T 2igt_A          191 AKENQVL  197 (332)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.80  E-value=1.6e-08  Score=83.83  Aligned_cols=61  Identities=26%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+..+.+.+...+      .++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|++|++.
T Consensus        45 ~~~~~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~  105 (205)
T 3grz_A           45 QTTQLAMLGIERAM------VKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAAL  105 (205)
T ss_dssp             HHHHHHHHHHHHHC------SSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhc------cCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHH
Confidence            45555555554433      13568999999999999999874  457999999999999999999864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.80  E-value=1.6e-08  Score=81.52  Aligned_cols=65  Identities=26%  Similarity=0.422  Sum_probs=53.4

Q ss_pred             cCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       171 iPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +||+..+.+...+...+ .   ..++.+|||+|||+|.+++.+++..   .+|+|+|+|+.+++.|++|++.
T Consensus        13 ~~~~~~~~~~~~~~~~~-~---~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~   77 (192)
T 1l3i_A           13 VPGPTAMEVRCLIMCLA-E---PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQR   77 (192)
T ss_dssp             SCCCCCHHHHHHHHHHH-C---CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHhc-C---CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHH
Confidence            56677777777777765 2   2245789999999999999999862   7999999999999999999764

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.79  E-value=1.2e-08  Score=86.39  Aligned_cols=64  Identities=23%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ...+|+|+++.+++.++... .    .++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|
T Consensus        26 ~~~~~~~~~~~l~~~~~~~~-~----~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~   89 (226)
T 3m33_A           26 ARVLSGPDPELTFDLWLSRL-L----TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN   89 (226)
T ss_dssp             CCEESSSCTTHHHHHHHHHH-C----CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHhc-C----CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh
Confidence            45678899999988877644 1    14578999999999999999986   37999999999999999988

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.79  E-value=1.9e-08  Score=84.56  Aligned_cols=45  Identities=20%  Similarity=0.300  Sum_probs=40.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+|+.   +.+|+|+|+|+++++.|++|+++
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~   99 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDT   99 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHH
Confidence            4578999999999999999986   47999999999999999999865

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.78  E-value=1.2e-08  Score=85.93  Aligned_cols=65  Identities=15%  Similarity=0.186  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+...++..+ ......++.+|||+|||+|.+++.+++.++++.+|+|+|+|+.+++.+++|+++
T Consensus        56 ~~~~~~i~~~l-~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~  120 (227)
T 1g8a_A           56 SKLGAAIMNGL-KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE  120 (227)
T ss_dssp             CHHHHHHHTTC-CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS
T ss_pred             hhHHHHHHhhH-HhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc
Confidence            34445554433 211223456899999999999999999876668999999999999999999864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.78  E-value=1.4e-08  Score=89.56  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=53.9

Q ss_pred             cccccccCC--CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          159 RDLVLSVEE--GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       159 ~~l~f~v~~--~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|..|.++.  ..|.|+...+  ...+...+      .++.+|||+|||+|.+++.+|+.. +. +|+|+|+|+.|++.|
T Consensus        95 ~g~~f~~d~~~~~f~~~~~~~--~~~l~~~~------~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a  164 (278)
T 2frn_A           95 NGIKYKLDVAKIMFSPANVKE--RVRMAKVA------KPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFL  164 (278)
T ss_dssp             TTEEEEEETTTSCCCGGGHHH--HHHHHHHC------CTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHH
T ss_pred             CCEEEEEEccceeEcCCcHHH--HHHHHHhC------CCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHH
Confidence            466777754  4456662222  22233333      135689999999999999999973 43 899999999999999


Q ss_pred             HHHHHhC
Q 026108          237 AFNAQRI  243 (243)
Q Consensus       237 r~Na~~~  243 (243)
                      ++|++.+
T Consensus       165 ~~n~~~n  171 (278)
T 2frn_A          165 VENIHLN  171 (278)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998753

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.77  E-value=1.3e-08  Score=86.44  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=42.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+|+.+ +..+|+|+|+|+.+++.|++|++.
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~  120 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE  120 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCEEEEEcccCCHHHHHHHHHc-CCcEEEEEECCHHHHHHHHHHhhc
Confidence            45689999999999999999986 467999999999999999999864

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.76  E-value=1.1e-08  Score=91.28  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             cccccc--CCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          160 DLVLSV--EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       160 ~l~f~v--~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      |..|.+  ....|.|+..+|..  .+.+.+      .++.+|||+|||+|.+++.+|+.  ..++|+|+|+|+.|++.++
T Consensus        96 G~~~~~D~~k~~f~~~~~~er~--ri~~~~------~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~  165 (278)
T 3k6r_A           96 GIKYKLDVAKIMFSPANVKERV--RMAKVA------KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLV  165 (278)
T ss_dssp             TEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHH
T ss_pred             CEEEEEeccceEEcCCcHHHHH--HHHHhc------CCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHH
Confidence            455554  45578888777653  344433      14578999999999999999986  3479999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +|++.|
T Consensus       166 ~N~~~N  171 (278)
T 3k6r_A          166 ENIHLN  171 (278)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.75  E-value=2.8e-08  Score=84.74  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=42.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|..++.+|+.. ++.+|+++|+|+.+++.|++|+++
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~  117 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLAT  117 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            4689999999999999999964 678999999999999999999864

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.74  E-value=2.1e-08  Score=87.42  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=50.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |...++.-+ ......++.+|||+|||+|..+..+|+..|++++|+|+|+|+++++.+++|+++
T Consensus        62 laa~i~~gl-~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~  124 (233)
T 4df3_A           62 LAAALLKGL-IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD  124 (233)
T ss_dssp             HHHHHHTTC-SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT
T ss_pred             HHHHHHhch-hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh
Confidence            334444433 223344678999999999999999999989999999999999999999998764

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.74  E-value=3.8e-08  Score=83.31  Aligned_cols=65  Identities=15%  Similarity=0.105  Sum_probs=50.8

Q ss_pred             ccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       170 liPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+..+....++..++...       ++.+|||+|||+|..++.+++.+ ++.+|+++|+|+.+++.|++|+++
T Consensus        36 ~~~~~~~~~~l~~~~~~~-------~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~  100 (233)
T 2gpy_A           36 PIMDLLGMESLLHLLKMA-------APARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKA  100 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhcc-------CCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            344555544544444422       34689999999999999999986 678999999999999999999764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.74  E-value=2.6e-08  Score=83.50  Aligned_cols=62  Identities=24%  Similarity=0.390  Sum_probs=49.5

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +....++..+....       ++.+|||+|||+|..++.+|+.++++.+|+++|+|+.+++.|++|++.
T Consensus        50 ~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  111 (225)
T 3tr6_A           50 PEQAQLLALLVKLM-------QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK  111 (225)
T ss_dssp             HHHHHHHHHHHHHH-------TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            44555555555433       346899999999999999999863378999999999999999999864

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.73  E-value=2.9e-08  Score=82.78  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=51.1

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+.+..++..+....       ++.+|||+|||+|..++.+++.++++.+|+++|+|+.+++.|++|+++
T Consensus        40 ~~~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  103 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIK-------QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD  103 (210)
T ss_dssp             CCHHHHHHHHHHHHHH-------CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhh-------CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            4566666666655433       345899999999999999999863278999999999999999999763

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.73  E-value=1.7e-08  Score=84.31  Aligned_cols=63  Identities=21%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +..+...+.+.+.+ ..   .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++|+.
T Consensus        12 ~~~~~~~~~l~~~l-~~---~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~   74 (219)
T 3jwg_A           12 NLNQQRLGTVVAVL-KS---VNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLK   74 (219)
T ss_dssp             CHHHHHHHHHHHHH-HH---TTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHH-hh---cCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHH
Confidence            44555566666665 22   135689999999999999999874 66899999999999999999874

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.73  E-value=2.9e-08  Score=83.25  Aligned_cols=47  Identities=28%  Similarity=0.350  Sum_probs=42.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|..++.+|+.++++++|+++|+++.+++.|++|+++
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  105 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER  105 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            46899999999999999999863378999999999999999999864

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.72  E-value=1.1e-08  Score=89.13  Aligned_cols=47  Identities=26%  Similarity=0.299  Sum_probs=43.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.++.+. ++.+|+|||+++++++.|++|++.
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~   82 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLEL   82 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHh
Confidence            35689999999999999999985 778999999999999999999864

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.72  E-value=4.7e-08  Score=80.89  Aligned_cols=46  Identities=26%  Similarity=0.421  Sum_probs=40.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++. +. .+|+|+|+|+.+++.|++|++.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~~   94 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLL-GA-KEVICVEVDKEAVDVLIENLGE   94 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHTGG
T ss_pred             CcCEEEEeeCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHH
Confidence            4578999999999999999986 33 5899999999999999999864

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.72  E-value=1.4e-08  Score=87.34  Aligned_cols=47  Identities=13%  Similarity=0.247  Sum_probs=42.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+|+.. ++.+|+|||+|+.+++.|++|++.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~   95 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIA   95 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHH
Confidence            35689999999999999999985 778999999999999999999764

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.72  E-value=2.2e-08  Score=84.93  Aligned_cols=45  Identities=31%  Similarity=0.353  Sum_probs=40.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~  122 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEV  122 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHH
Confidence            3568999999999999999985   37999999999999999999864

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.72  E-value=3.1e-08  Score=91.82  Aligned_cols=48  Identities=15%  Similarity=0.023  Sum_probs=43.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|.+++.+|++. +..+|+++|++++|++.|++|++.|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n   94 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLN   94 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHh
Confidence            35689999999999999999986 5578999999999999999999763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.71  E-value=1.2e-08  Score=92.40  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=55.2

Q ss_pred             cccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       161 l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      +.+...+++|.+.   ..++.+.+    .+ .   ...+.+|||+|||+|.+++.+++.. ++.+|+++|+|+.+++.|+
T Consensus       167 ~~~~~~~gvf~~~~~d~~~~~ll~----~l-~---~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~  237 (343)
T 2pjd_A          167 LTVKTLPGVFSRDGLDVGSQLLLS----TL-T---PHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASR  237 (343)
T ss_dssp             EEEEECTTCTTSSSCCHHHHHHHH----HS-C---TTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHH
T ss_pred             eEEEecCCccCCCCCcHHHHHHHH----hc-C---cCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence            4456678888854   22444443    33 1   1134589999999999999999984 7789999999999999999


Q ss_pred             HHHHh
Q 026108          238 FNAQR  242 (243)
Q Consensus       238 ~Na~~  242 (243)
                      +|++.
T Consensus       238 ~~~~~  242 (343)
T 2pjd_A          238 ATLAA  242 (343)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99865

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.71  E-value=2.1e-08  Score=88.74  Aligned_cols=45  Identities=9%  Similarity=-0.023  Sum_probs=40.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||||||+|.+++.+|+.   +++|+|+|+|+.+++.|++|++.
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~   89 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALAD   89 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSS
T ss_pred             CcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHh
Confidence            4678999999999999999985   37999999999999999999754

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.70  E-value=1.5e-08  Score=89.65  Aligned_cols=47  Identities=21%  Similarity=0.308  Sum_probs=41.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+|..+ +..+|+|||+|+.+++.|++|++.
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHh
Confidence            45789999999999999999987 668999999999999999998753

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.70  E-value=3.8e-08  Score=82.81  Aligned_cols=60  Identities=13%  Similarity=0.173  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+.+.+...+ .  ...++.+|||+|||+|.++..++..+ |+.+|+|+|+|+.+++.|++++.
T Consensus        30 ~~~~~~~~~~-~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~   89 (234)
T 3dtn_A           30 DFYGVSVSIA-S--VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFR   89 (234)
T ss_dssp             HHHHHHHHTC-C--CSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHh-h--cCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhc
Confidence            3445555554 2  12345789999999999999999985 78999999999999999999865

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.70  E-value=2.1e-08  Score=84.03  Aligned_cols=44  Identities=7%  Similarity=-0.117  Sum_probs=39.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|..+..||+.   +.+|+|||+|+.|++.|+++++
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~   65 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERG   65 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHcc
Confidence            4578999999999999999986   3699999999999999998753

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.70  E-value=1.8e-08  Score=90.72  Aligned_cols=59  Identities=20%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++.+++++ .   ..++.+|||+|||+|.+++.+++.+ ++++|+|+|+|++|++.|++|++.
T Consensus        14 Ll~e~l~~L-~---~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~   72 (301)
T 1m6y_A           14 MVREVIEFL-K---PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKE   72 (301)
T ss_dssp             THHHHHHHH-C---CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGG
T ss_pred             HHHHHHHhc-C---CCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh
Confidence            556666666 2   2245789999999999999999986 678999999999999999999864

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.70  E-value=5.4e-08  Score=82.42  Aligned_cols=73  Identities=21%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             CCcccCCccHHHHHHHHHHHh------------hhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          167 EGVFIPRPETELMVDLVSDVL------------VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       167 ~~vliPRp~TElLv~~v~~~l------------~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      +.+++|+|+++.+.+.+....            .......++.+|||+|||+|.+++.+++.   +.+|+++|+|+++++
T Consensus        51 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~  127 (248)
T 2yvl_A           51 NGFEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYK  127 (248)
T ss_dssp             TTEEEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHH
T ss_pred             EEEEEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHH
Confidence            678899999988875443211            00011224578999999999999999996   379999999999999


Q ss_pred             HHHHHHHh
Q 026108          235 VAAFNAQR  242 (243)
Q Consensus       235 ~Ar~Na~~  242 (243)
                      .|++|.+.
T Consensus       128 ~a~~~~~~  135 (248)
T 2yvl_A          128 TAQKNLKK  135 (248)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=4.3e-08  Score=84.66  Aligned_cols=47  Identities=28%  Similarity=0.311  Sum_probs=42.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|..++.+|+.++++++|+++|+|+++++.|++|+++
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~  110 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL  110 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            46899999999999999999873378999999999999999999864

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.69  E-value=4.2e-08  Score=88.91  Aligned_cols=67  Identities=24%  Similarity=0.188  Sum_probs=54.2

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.|..+.+...++... .   ..++.+|||+|||+|.+++.+|...+++.+|+|+|+|+.+++.|++|+++
T Consensus       184 ~a~l~~~la~~l~~~~-~---~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~  250 (354)
T 3tma_A          184 RGSLTPVLAQALLRLA-D---ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA  250 (354)
T ss_dssp             SCSCCHHHHHHHHHHT-T---CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHh-C---CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH
Confidence            4466677777776655 2   22456899999999999999999754678999999999999999999875

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.69  E-value=1.6e-08  Score=87.22  Aligned_cols=45  Identities=11%  Similarity=0.286  Sum_probs=41.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+|||||||+|.+++.+|+.+ |+..|+|+|+|+.+++.|++|++
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~   91 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIR   91 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHH
Confidence            4579999999999999999985 88999999999999999999875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.69  E-value=5.4e-08  Score=87.03  Aligned_cols=62  Identities=23%  Similarity=0.336  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+.+.++..+ .   ..++.+|||+|||+|.+++.+++..+.+.+|+|+|+|+++++.|++|++.
T Consensus        61 ~~~~~~l~~~l-~---~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~  122 (317)
T 1dl5_A           61 PSLMALFMEWV-G---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER  122 (317)
T ss_dssp             HHHHHHHHHHT-T---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-C---CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            34555666555 1   22467899999999999999999862247899999999999999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.68  E-value=5.7e-08  Score=82.69  Aligned_cols=64  Identities=22%  Similarity=0.295  Sum_probs=50.3

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |..+.....++..+ .  ...++.+|||+|||+|.+++.+++.. + .+|+|+|+|+.+++.|++|++.
T Consensus        28 ~~~~~~~~~~l~~l-~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~   91 (257)
T 3f4k_A           28 PGSPEATRKAVSFI-N--ELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVK   91 (257)
T ss_dssp             SCCHHHHHHHHTTS-C--CCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH-h--cCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHH
Confidence            44555666666654 1  12245689999999999999999985 4 4999999999999999999764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.67  E-value=5e-08  Score=80.32  Aligned_cols=60  Identities=25%  Similarity=0.369  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ...+.+.+.+.+ .   . ++.+|||+|||+|.++..+++.  ++.+|+|+|+|+.+++.|++|++.
T Consensus        29 ~~~~~~~~~~~~-~---~-~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~   88 (219)
T 3dlc_A           29 YPIIAENIINRF-G---I-TAGTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIAD   88 (219)
T ss_dssp             HHHHHHHHHHHH-C---C-CEEEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhc-C---C-CCCEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHh
Confidence            444566666655 1   1 2238999999999999999997  568999999999999999999764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.67  E-value=5.6e-08  Score=87.28  Aligned_cols=48  Identities=21%  Similarity=0.411  Sum_probs=43.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++..+++.+|+|+|+++.+++.|++|++.
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~  152 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH  152 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            456899999999999999999766778999999999999999999863

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.67  E-value=5.2e-08  Score=84.45  Aligned_cols=63  Identities=13%  Similarity=0.229  Sum_probs=51.0

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+++..++..+....       ++.+|||+|||+|..++.+|+.++++++|+++|+|+++++.|++|+++
T Consensus        64 ~~~~~~ll~~l~~~~-------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~  126 (247)
T 1sui_A           64 SADEGQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK  126 (247)
T ss_dssp             CHHHHHHHHHHHHHT-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh-------CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            456666666555432       346899999999999999999873378999999999999999999864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.67  E-value=4.5e-08  Score=88.49  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHhhhcCCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHH
Q 026108          130 IGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAI  209 (243)
Q Consensus       130 ~~~~~~~~~~~~R~~~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~i  209 (243)
                      +.....++.+.+|... +|.+|               ...+.|+....++...+ ..+ ..  ..++.+|||+|||||.+
T Consensus        85 ~~~g~~ye~~~~~~~~-~~~~~---------------g~~~TP~~i~~~~~~ll-~~l-~~--~~~~~~VlDp~cGsG~~  144 (344)
T 2f8l_A           85 EEIRKGLQLALLKGMK-HGIQV---------------NHQMTPDSIGFIVAYLL-EKV-IQ--KKKNVSILDPACGTANL  144 (344)
T ss_dssp             HHHHHHHHHHHHHHTS-SSCCG---------------GGCCCCHHHHHHHHHHH-HHH-HT--TCSEEEEEETTCTTSHH
T ss_pred             hHHHHHHHHHHHHHhh-ccccc---------------CcCCChHHHHHHHHHHH-HHh-cC--CCCCCEEEeCCCCccHH
Confidence            3456677777766654 66554               11244665555544433 322 11  11346899999999999


Q ss_pred             HHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHHHHh
Q 026108          210 AIGIARVLGSK-----GSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       210 ai~LA~~~~p~-----a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+++.+ +.     .+|+|+|+++.++++|+.|+..
T Consensus       145 l~~~~~~~-~~~~~~~~~v~GiDi~~~~~~~a~~n~~~  181 (344)
T 2f8l_A          145 LTTVINQL-ELKGDVDVHASGVDVDDLLISLALVGADL  181 (344)
T ss_dssp             HHHHHHHH-HTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHhcCCCceEEEEECCHHHHHHHHHHHHh
Confidence            99999886 43     7999999999999999999863

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.66  E-value=6.5e-08  Score=82.71  Aligned_cols=48  Identities=27%  Similarity=0.464  Sum_probs=43.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.++++.+|+++|+|+++++.|++|++.
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~  140 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW  140 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHH
Confidence            467899999999999999999866789999999999999999999864

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.65  E-value=6.3e-08  Score=82.10  Aligned_cols=48  Identities=19%  Similarity=0.266  Sum_probs=42.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.++++.+|+|+|+|+.+++.+.+|+++
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~  124 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK  124 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc
Confidence            456899999999999999999875668999999999988888887764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.65  E-value=6.1e-08  Score=82.06  Aligned_cols=46  Identities=22%  Similarity=0.214  Sum_probs=39.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+|+.. ++.+|+|+|+|+.+++.+.++++
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~-~~~~V~gvD~s~~~l~~~~~~a~  102 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVR  102 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcCCHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHh
Confidence            46789999999999999999986 46799999999998876666554

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.65  E-value=2.8e-08  Score=86.75  Aligned_cols=43  Identities=7%  Similarity=-0.114  Sum_probs=38.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|..+..||+.   +.+|+|||+|+.|++.|+++.
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~  110 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQ  110 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhc
Confidence            4568999999999999999985   479999999999999998764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.64  E-value=9.3e-08  Score=82.07  Aligned_cols=63  Identities=16%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+++..++..+....       ++.+|||+|||+|..++.+|+.++++.+|+++|+|+++++.|++|+++
T Consensus        55 ~~~~~~~l~~l~~~~-------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~  117 (237)
T 3c3y_A           55 SPLAGQLMSFVLKLV-------NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK  117 (237)
T ss_dssp             CHHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh-------CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            345555555544432       346899999999999999999874478999999999999999999864

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.64  E-value=1e-07  Score=81.02  Aligned_cols=45  Identities=22%  Similarity=0.250  Sum_probs=40.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|++.
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~   85 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKE   85 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHh
Confidence            4568999999999999999985   47999999999999999999764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.64  E-value=8.2e-08  Score=79.60  Aligned_cols=57  Identities=19%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..+...+ .   ..++.+|||+|||+|.+++.+++.   +.+|+++|+|+.+++.|++|++.
T Consensus        65 ~~~~~~~~l-~---~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~  121 (210)
T 3lbf_A           65 MVARMTELL-E---LTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKN  121 (210)
T ss_dssp             HHHHHHHHT-T---CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-C---CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHH
Confidence            444455544 1   224678999999999999999996   37999999999999999999864

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.64  E-value=1.2e-08  Score=87.89  Aligned_cols=63  Identities=21%  Similarity=0.273  Sum_probs=51.4

Q ss_pred             CcccCC-ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHH
Q 026108          168 GVFIPR-PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       168 ~vliPR-p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~---~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      ++.+++ |+++.++..++...       ++.+|||||||+|.+++.+|+.   ++++++|+|||+|+++++.|+
T Consensus        60 ~~~~~~~p~~~~~l~~~l~~~-------~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~  126 (236)
T 2bm8_A           60 GLRMLKDPDTQAVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA  126 (236)
T ss_dssp             TEECCSCHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG
T ss_pred             cccccCCHHHHHHHHHHHHhc-------CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh
Confidence            566777 88888777766644       2458999999999999999987   347789999999999988775

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.63  E-value=1.3e-07  Score=80.62  Aligned_cols=47  Identities=21%  Similarity=0.229  Sum_probs=42.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|..++.+++.++++.+|+++|+|+.+++.|++|++.
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  107 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE  107 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            46899999999999999999863368999999999999999999754

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.63  E-value=9.9e-08  Score=83.83  Aligned_cols=48  Identities=25%  Similarity=0.350  Sum_probs=42.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+.++.+|+|+|+|+.+++.|++|++.
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~   83 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG   83 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            457899999999999999998643678999999999999999999764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.63  E-value=5.7e-08  Score=80.21  Aligned_cols=45  Identities=31%  Similarity=0.382  Sum_probs=39.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.+++.+++.  +..+|+|+|+|+.+++.|++|++
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~   95 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG   95 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC
Confidence            4568999999999999999985  33589999999999999999863

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.63  E-value=7.4e-08  Score=80.92  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=42.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|..++.+|+.++++.+|+++|+|+.+++.|++|++.
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  116 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ  116 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            46899999999999999999763368999999999999999999864

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.62  E-value=7.5e-08  Score=82.99  Aligned_cols=64  Identities=16%  Similarity=0.221  Sum_probs=49.6

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |........++..+ .  ...++.+|||+|||+|.+++.+++.  ++.+|+|+|+|+.+++.|++|++.
T Consensus        28 ~~~~~~~~~~l~~l-~--~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~   91 (267)
T 3kkz_A           28 PGSPEVTLKALSFI-D--NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQ   91 (267)
T ss_dssp             SCCHHHHHHHHTTC-C--CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc-c--cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHH
Confidence            33444555555554 1  1234678999999999999999986  567999999999999999999754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.62  E-value=6.3e-08  Score=80.49  Aligned_cols=48  Identities=23%  Similarity=0.340  Sum_probs=42.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.++..+++..+++.+|+|+|+|+.+++.|++|++.
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~   84 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK   84 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            456899999999999999999865678999999999999999999753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.62  E-value=1.5e-07  Score=78.21  Aligned_cols=47  Identities=23%  Similarity=0.319  Sum_probs=42.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.+++.+++..+++.+|+++|+|+.+++.|++|++
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~  123 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR  123 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45689999999999999999986555899999999999999999875

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.61  E-value=1.2e-07  Score=89.36  Aligned_cols=58  Identities=22%  Similarity=0.329  Sum_probs=45.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+..++..+    ...++.+|||||||+|.+++.+|... +..+|+|||+|+.++++|++|++
T Consensus       161 ~i~~il~~l----~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e  218 (438)
T 3uwp_A          161 LVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDR  218 (438)
T ss_dssp             HHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHH
Confidence            445555544    22356789999999999999999875 44479999999999999999864

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.61  E-value=1.6e-08  Score=87.40  Aligned_cols=62  Identities=23%  Similarity=0.278  Sum_probs=49.8

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++..++..+....       ++.+|||+|||+|..++.+|+.++++++|+++|+|+++++.|++|+++
T Consensus        46 ~~~~~~l~~l~~~~-------~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~  107 (242)
T 3r3h_A           46 PEQAQFMQMLIRLT-------RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE  107 (242)
T ss_dssp             HHHHHHHHHHHHHH-------TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHH
T ss_pred             HHHHHHHHHHHhhc-------CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            45555555555433       346899999999999999999864478999999999999999999864

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.61  E-value=1.3e-07  Score=88.01  Aligned_cols=44  Identities=27%  Similarity=0.172  Sum_probs=40.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|.+++.+|+.   ++.|+|+|+|+.|++.|++|++.
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~  258 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALR  258 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHH
Confidence            678999999999999999985   35699999999999999999875

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.61  E-value=1.1e-08  Score=90.98  Aligned_cols=45  Identities=22%  Similarity=0.223  Sum_probs=38.7

Q ss_pred             CCcEEEeccCCcH----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGA----IAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~----iai~LA~~~~p---~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +.+|||+|||||.    +++.|+..++.   +.+|+|+|+|++||+.|++|+
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            3589999999999    88888887532   469999999999999999985

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.60  E-value=2.9e-08  Score=82.97  Aligned_cols=45  Identities=24%  Similarity=0.314  Sum_probs=38.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.+++.+++.+ |+.+|+|+|+|+.+++.+.+++
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a   71 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKA   71 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence            45689999999999999999985 8899999999999888644443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.60  E-value=1.1e-07  Score=87.84  Aligned_cols=74  Identities=14%  Similarity=0.056  Sum_probs=53.6

Q ss_pred             cccccccCCC-----cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026108          159 RDLVLSVEEG-----VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA  233 (243)
Q Consensus       159 ~~l~f~v~~~-----vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL  233 (243)
                      .|..|.+++.     .|...  .......+..+.       ++.+|||+|||+|.+++.+|+. + ..+|+|+|+|+.|+
T Consensus       188 ~g~~f~v~~~~~~~tgff~~--~~~~~~~l~~~~-------~~~~VLDl~cG~G~~sl~la~~-g-~~~V~~vD~s~~al  256 (396)
T 3c0k_A          188 HGMKLLVDIQHGHKTGYYLD--QRDSRLATRRYV-------ENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEAL  256 (396)
T ss_dssp             TTEEEEECTTTSSTTSSCGG--GHHHHHHHHHHC-------TTCEEEEESCTTCSHHHHHHHT-T-CSEEEEEESCHHHH
T ss_pred             CCEEEEEeccccccCCcCcC--HHHHHHHHHHhh-------CCCeEEEeeccCCHHHHHHHHC-C-CCEEEEEECCHHHH
Confidence            4677888775     44442  111122222221       3568999999999999999985 3 36999999999999


Q ss_pred             HHHHHHHHhC
Q 026108          234 AVAAFNAQRI  243 (243)
Q Consensus       234 ~~Ar~Na~~~  243 (243)
                      +.|++|++.|
T Consensus       257 ~~a~~n~~~n  266 (396)
T 3c0k_A          257 DIARQNVELN  266 (396)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999999754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.60  E-value=7.1e-08  Score=86.04  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=61.5

Q ss_pred             CceeEEeee-ccccccccccCCCcccCCccH----HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCc
Q 026108          147 KPFQYLVGC-EHWRDLVLSVEEGVFIPRPET----ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG  221 (243)
Q Consensus       147 ~Pl~yi~g~-~~f~~l~f~v~~~vliPRp~T----ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a  221 (243)
                      -|.|+|.-. ...+|..+.++..+.+++.+.    |.++...+- .  .   ..+.+|||||||+|.+++.+++.. +..
T Consensus        43 s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~-~--~---~~~~~VLdiG~G~G~~~~~l~~~~-~~~  115 (296)
T 1inl_A           43 SDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMF-L--H---PNPKKVLIIGGGDGGTLREVLKHD-SVE  115 (296)
T ss_dssp             CSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHH-H--S---SSCCEEEEEECTTCHHHHHHTTST-TCS
T ss_pred             CCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHh-c--C---CCCCEEEEEcCCcCHHHHHHHhcC-CCC
Confidence            455554332 223467788887666676653    444432221 1  1   134689999999999999999874 568


Q ss_pred             EEEEEeCCHHHHHHHHHHHH
Q 026108          222 SIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       222 ~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +|++||+|+.+++.|++|+.
T Consensus       116 ~v~~vDid~~~~~~a~~~~~  135 (296)
T 1inl_A          116 KAILCEVDGLVIEAARKYLK  135 (296)
T ss_dssp             EEEEEESCHHHHHHHHHHCH
T ss_pred             EEEEEECCHHHHHHHHHHhH
Confidence            99999999999999999974

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.60  E-value=2.9e-07  Score=80.89  Aligned_cols=46  Identities=15%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+ + .+|+|+|+|+.+++.|++|++.
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvD~s~~~~~~a~~~~~~  117 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEY-D-VNVIGLTLSENQYAHDKAMFDE  117 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-C-CEEEEEECCHHHHHHHHHHHHH
T ss_pred             CcCEEEEeeccCcHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHh
Confidence            46789999999999999999986 3 7999999999999999999764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.59  E-value=1.4e-07  Score=80.56  Aligned_cols=63  Identities=29%  Similarity=0.352  Sum_probs=49.8

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .|.+..++..+....       ++.+|||+|||+|..++.+|+.++++.+|+++|+|+++++.|++|+++
T Consensus        57 ~~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~  119 (232)
T 3cbg_A           57 SPEQAQFLGLLISLT-------GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK  119 (232)
T ss_dssp             CHHHHHHHHHHHHHH-------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc-------CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            455555555554433       345899999999999999999863368999999999999999999753

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.59  E-value=1.4e-07  Score=80.27  Aligned_cols=48  Identities=29%  Similarity=0.392  Sum_probs=43.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.++++.+|+++|+|+.+++.|++|++.
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~  143 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA  143 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            456899999999999999999866678999999999999999999754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.58  E-value=9.2e-08  Score=81.37  Aligned_cols=61  Identities=11%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       175 ~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ......+.+++.+    ...++.+|||+|||+|.+++.+++.+  +.+|+|+|+|+.+++.|++++.
T Consensus        39 ~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~   99 (266)
T 3ujc_A           39 GGLEATKKILSDI----ELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVS   99 (266)
T ss_dssp             THHHHHHHHTTTC----CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCC
T ss_pred             chHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhh
Confidence            3334455555544    22345689999999999999999986  4799999999999999998864

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.58  E-value=8.5e-08  Score=81.45  Aligned_cols=46  Identities=15%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.  ...+|+|+|+|+.+++.|++|++.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~  105 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPR  105 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGG
T ss_pred             CCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHh
Confidence            3568999999999999999774  235999999999999999999854

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.57  E-value=8.9e-08  Score=83.33  Aligned_cols=60  Identities=18%  Similarity=0.114  Sum_probs=47.7

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..++.+.+.+...+ ...   ++.+|||+|||+|.+++.++..   +.+|+|+|+|+.+++.|++|+
T Consensus        40 ~~~~~~~~~l~~~l-~~~---~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~   99 (293)
T 3thr_A           40 SRTAEYKAWLLGLL-RQH---GCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKER   99 (293)
T ss_dssp             CBCHHHHHHHHHHH-HHT---TCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHh-ccc---CCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhh
Confidence            34455666666665 221   3568999999999999999986   369999999999999999886

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.57  E-value=1.6e-07  Score=79.73  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=47.0

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..+.+.+ .   ..++.+|||+|||+|.+++.+++.. + .+|+++|+|+.+++.|++|++.
T Consensus        79 ~~~~~~~~l-~---~~~~~~vLdiG~G~G~~~~~la~~~-~-~~v~~vD~~~~~~~~a~~~~~~  136 (235)
T 1jg1_A           79 MVAIMLEIA-N---LKPGMNILEVGTGSGWNAALISEIV-K-TDVYTIERIPELVEFAKRNLER  136 (235)
T ss_dssp             HHHHHHHHH-T---CCTTCCEEEECCTTSHHHHHHHHHH-C-SCEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-C---CCCCCEEEEEeCCcCHHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHH
Confidence            455555555 1   2245689999999999999999986 5 7999999999999999999764

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.56  E-value=1e-07  Score=86.41  Aligned_cols=73  Identities=25%  Similarity=0.274  Sum_probs=55.1

Q ss_pred             cccccccCCCc--ccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          159 RDLVLSVEEGV--FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       159 ~~l~f~v~~~v--liPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|..|.+++..  +.++..++.+  .+...+      .++.+|||+|||+|.+++. |+.   ..+|+|+|+|+.|++.|
T Consensus       165 ~g~~f~~d~~~~~~~~~~~~er~--~i~~~~------~~~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a  232 (336)
T 2yx1_A          165 NGYRLWVDIAKVYFSPRLGGERA--RIMKKV------SLNDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELL  232 (336)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHH
T ss_pred             CCEEEEEehHHhccCCccHHHHH--HHHHhc------CCCCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHH
Confidence            46677777654  4455556665  344433      1356899999999999999 872   47999999999999999


Q ss_pred             HHHHHhC
Q 026108          237 AFNAQRI  243 (243)
Q Consensus       237 r~Na~~~  243 (243)
                      ++|++.|
T Consensus       233 ~~n~~~n  239 (336)
T 2yx1_A          233 KKNIKLN  239 (336)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.56  E-value=1.3e-07  Score=79.44  Aligned_cols=48  Identities=25%  Similarity=0.417  Sum_probs=42.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.++..+++.+++..+|+++|+|+.+++.|++|+++
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~  124 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK  124 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            457899999999999999999865667999999999999999999764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.56  E-value=1.8e-07  Score=80.96  Aligned_cols=48  Identities=25%  Similarity=0.394  Sum_probs=43.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.++++.+|+++|+|+++++.|++|++.
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~  146 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG  146 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            456899999999999999999766678999999999999999999853

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.55  E-value=1.8e-07  Score=88.30  Aligned_cols=47  Identities=15%  Similarity=0.201  Sum_probs=41.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH-------HHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA-------AFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A-------r~Na~~  242 (243)
                      ++.+|||||||+|.+++.+|+.. +..+|+|||+|+.+++.|       ++|++.
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~  295 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKL  295 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH
Confidence            46789999999999999999986 556899999999999999       888754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.55  E-value=1.9e-07  Score=77.70  Aligned_cols=44  Identities=20%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|.++..+++.. +  +|+|+|+|+.+++.|++|++.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~   82 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKS   82 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHH
T ss_pred             CCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHh
Confidence            5689999999999999999863 3  999999999999999999753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.55  E-value=1.1e-07  Score=86.01  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=61.9

Q ss_pred             CceeEEeeec-cccccccccCCCcccCCcc----HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCc
Q 026108          147 KPFQYLVGCE-HWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG  221 (243)
Q Consensus       147 ~Pl~yi~g~~-~f~~l~f~v~~~vliPRp~----TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a  221 (243)
                      -|.|+|.-.. ..+|..+.++..+.+++++    +|.++...+..   . +  .+.+|||||||+|.+++.+++.. +..
T Consensus        61 s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~---~-~--~~~~VLdIG~G~G~~~~~l~~~~-~~~  133 (314)
T 2b2c_A           61 SKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFA---H-P--DPKRVLIIGGGDGGILREVLKHE-SVE  133 (314)
T ss_dssp             CSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHH---S-S--SCCEEEEESCTTSHHHHHHTTCT-TCC
T ss_pred             CCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhh---C-C--CCCEEEEEcCCcCHHHHHHHHcC-CCC
Confidence            4555554321 2235667777666666655    55554432211   1 1  34689999999999999999874 678


Q ss_pred             EEEEEeCCHHHHHHHHHHHH
Q 026108          222 SIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       222 ~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +|++||+|+.+++.|++|+.
T Consensus       134 ~v~~vDid~~~i~~Ar~~~~  153 (314)
T 2b2c_A          134 KVTMCEIDEMVIDVAKKFLP  153 (314)
T ss_dssp             EEEEECSCHHHHHHHHHHCT
T ss_pred             EEEEEECCHHHHHHHHHHHH
Confidence            99999999999999999974

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.53  E-value=1.7e-07  Score=81.89  Aligned_cols=47  Identities=19%  Similarity=0.167  Sum_probs=42.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p-~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+ + +++|+|+|+|+.+++.|++|+..
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~~v~gvD~s~~~~~~a~~~~~~   69 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLL-PEGSKYTGIDSGETLLAEARELFRL   69 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTS-CTTCEEEEEESCHHHHHHHHHHHHS
T ss_pred             CCCeEEEecCCCCHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHh
Confidence            46789999999999999999986 5 58999999999999999999763

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.53  E-value=2.2e-08  Score=85.76  Aligned_cols=46  Identities=22%  Similarity=0.171  Sum_probs=37.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCC-HHHHHHH---HHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN-PLAAAVA---AFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS-~~AL~~A---r~Na~  241 (243)
                      ++.+|||||||+|.+++.+|+.. ++.+|+|||+| +.+++.|   ++|++
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~   73 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPS   73 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGG
T ss_pred             CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            35689999999999999999864 78999999999 5566665   77654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.53  E-value=1.5e-07  Score=82.17  Aligned_cols=48  Identities=23%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.++++.+|+|+|+|+.+++.|++|+++
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~  157 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE  157 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            457899999999999999999744678999999999999999999865

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.52  E-value=3.4e-07  Score=78.66  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+.+.+++.+    ...++.+|||+|||+|.+++.+++..  +.+|+|+|+|+.+++.|+++++.
T Consensus        47 ~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~  106 (273)
T 3bus_A           47 DRLTDEMIALL----DVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATA  106 (273)
T ss_dssp             HHHHHHHHHHS----CCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHh
Confidence            34445555544    22346789999999999999999874  58999999999999999998753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.52  E-value=1.9e-07  Score=85.75  Aligned_cols=63  Identities=24%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |..+.+...++... .    .++.+|||+|||+|.+++.+|... +.++|+|+|+|+.+++.|++|++.
T Consensus       201 ~l~~~la~~l~~~~-~----~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~  263 (373)
T 3tm4_A          201 HLKASIANAMIELA-E----LDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALA  263 (373)
T ss_dssp             CCCHHHHHHHHHHH-T----CCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHhh-c----CCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHH
Confidence            44556666655543 1    135679999999999999999973 556999999999999999999875

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.52  E-value=2.7e-07  Score=81.76  Aligned_cols=46  Identities=24%  Similarity=0.282  Sum_probs=41.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+  +.+|+|+|+|+.+++.|++|++.
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~  162 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARE  162 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH
Confidence            46789999999999999999975  47999999999999999999864

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.52  E-value=1.1e-07  Score=91.96  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=40.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||.|.++..||+.   +++|+|||+|+.+|++|+..+..
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~  110 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEE  110 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHh
Confidence            3568999999999999999985   48999999999999999998764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.52  E-value=1.3e-07  Score=81.19  Aligned_cols=46  Identities=15%  Similarity=0.063  Sum_probs=40.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++++|||||||+|.++..+++.. + .+|++||+|+++++.|+++++.
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~-~-~~v~~id~~~~~~~~a~~~~~~  105 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPR  105 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSC-E-EEEEEEECCHHHHHHHHHHGGG
T ss_pred             CCCeEEEECCCccHHHHHHHHhC-C-cEEEEEeCCHHHHHHHHHHHhh
Confidence            46789999999999999998863 4 6999999999999999998764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.52  E-value=6.4e-08  Score=81.12  Aligned_cols=44  Identities=20%  Similarity=0.244  Sum_probs=38.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++...   .+|+|+|+|+.+++.|+++..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~   85 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK   85 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC
T ss_pred             CCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhh
Confidence            35679999999999999999862   489999999999999998753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.51  E-value=2.9e-07  Score=91.58  Aligned_cols=47  Identities=17%  Similarity=0.117  Sum_probs=41.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|.+++.+|+. +. .+|++||+|+.|++.|++|++.|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga-~~V~aVD~s~~al~~a~~N~~~n  585 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GA-RSTTTVDMSRTYLEWAERNLRLN  585 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence            3568999999999999999985 33 57999999999999999999764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.51  E-value=3.6e-07  Score=76.78  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +++.+.+.+ .   ..++.+|||+|||+|.++..++...   .+|+|+|+|+.+++.|++|...
T Consensus        58 ~~~~~~~~~-~---~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~  114 (231)
T 1vbf_A           58 LGIFMLDEL-D---LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY  114 (231)
T ss_dssp             HHHHHHHHT-T---CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHHHhc-C---CCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhh
Confidence            455555554 1   2245689999999999999999872   7999999999999999999754

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.51  E-value=1.4e-07  Score=78.28  Aligned_cols=45  Identities=20%  Similarity=0.251  Sum_probs=40.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.++..++...   .+|+|+|+|+.+++.|++|+..
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~   95 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKR   95 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhccc
Confidence            45689999999999999999863   6999999999999999998753

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.50  E-value=2.2e-07  Score=80.39  Aligned_cols=56  Identities=9%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+.+.+.+    ...++.+|||+|||+|.++..++...   .+|+|+|+|+++++.|++|++
T Consensus        18 ~~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~   73 (244)
T 1qam_A           18 NIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV   73 (244)
T ss_dssp             HHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHhC----CCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhc
Confidence            445555544    12245689999999999999999872   799999999999999999874

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.50  E-value=2.1e-07  Score=80.13  Aligned_cols=48  Identities=19%  Similarity=0.303  Sum_probs=42.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH------HHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL------AAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~------AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++..+++.+|+|+|+|+.      +++.|++|++.
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~   96 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA   96 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh
Confidence            4678999999999999999998656689999999997      99999998753

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.50  E-value=1.7e-07  Score=82.25  Aligned_cols=58  Identities=12%  Similarity=0.080  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ......++..+ .   . ++.+|||||||+|.++..+++.   +.+|+|+|+|+.+++.|++|+..
T Consensus        69 ~~~~~~~~~~~-~---~-~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~  126 (299)
T 3g2m_A           69 TSEAREFATRT-G---P-VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAE  126 (299)
T ss_dssp             HHHHHHHHHHH-C---C-CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHhh-C---C-CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhh
Confidence            33445555555 1   1 2348999999999999999985   47999999999999999998764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.50  E-value=2.9e-07  Score=79.33  Aligned_cols=47  Identities=21%  Similarity=0.316  Sum_probs=42.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.|++|+..
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~   83 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEK   83 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            46789999999999999999984 789999999999999999999754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.50  E-value=9.3e-07  Score=76.74  Aligned_cols=46  Identities=15%  Similarity=0.147  Sum_probs=40.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++..  +.+|+|+|+|+.+++.|+++++.
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~  109 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVAN  109 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHT
T ss_pred             CcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHh
Confidence            45789999999999999999776  36999999999999999998753

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.50  E-value=2.8e-07  Score=78.95  Aligned_cols=65  Identities=17%  Similarity=0.195  Sum_probs=46.6

Q ss_pred             CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       167 ~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+..+..+.+.+++.+.        ..++.+|||+|||+|.++..++...   .+|+|+|+|+.+++.|+++++.
T Consensus        17 s~~~~~~~~~~~l~~~l~--------~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~   81 (260)
T 1vl5_A           17 SQIHAKGSDLAKLMQIAA--------LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG   81 (260)
T ss_dssp             ------CCCHHHHHHHHT--------CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CccccCHHHHHHHHHHhC--------CCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHh
Confidence            344455566665555431        1145689999999999999999863   4999999999999999998753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.49  E-value=1.9e-07  Score=88.92  Aligned_cols=48  Identities=21%  Similarity=0.260  Sum_probs=43.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+|..++..++|+|+|+|+.+++.+++|+++
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r  148 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER  148 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            467899999999999999999874447999999999999999999975

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.49  E-value=3.5e-07  Score=74.41  Aligned_cols=44  Identities=25%  Similarity=0.228  Sum_probs=39.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|++|++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~   75 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKS   75 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHH
Confidence            4568999999999999999985   4699999999999999999875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.49  E-value=2.9e-07  Score=77.62  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=53.6

Q ss_pred             ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC-----CcEEEEEeCCHHH
Q 026108          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----KGSIIAVDLNPLA  232 (243)
Q Consensus       158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p-----~a~V~avDiS~~A  232 (243)
                      |.+..+.+..+..+..|.   +...+++++ .. ...++.+|||+|||+|.++..+++..+.     ..+|+++|+++++
T Consensus        52 y~d~~~~~~~~~~~~~p~---~~~~~~~~l-~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~  126 (227)
T 1r18_A           52 YMDAPQPIGGGVTISAPH---MHAFALEYL-RD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAEL  126 (227)
T ss_dssp             TBSSCEEEETTEEECCHH---HHHHHHHHT-TT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHH
T ss_pred             ccCCCcccCCCCccCChH---HHHHHHHHH-Hh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHH
Confidence            334444444444444443   233444444 11 1224568999999999999999997521     2599999999999


Q ss_pred             HHHHHHHHHh
Q 026108          233 AAVAAFNAQR  242 (243)
Q Consensus       233 L~~Ar~Na~~  242 (243)
                      ++.|++|+++
T Consensus       127 ~~~a~~~~~~  136 (227)
T 1r18_A          127 VRRSKANLNT  136 (227)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999753

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.48  E-value=2e-07  Score=81.05  Aligned_cols=45  Identities=18%  Similarity=0.169  Sum_probs=40.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|++.
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~  164 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEK  164 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHH
Confidence            4568999999999999999986   36999999999999999999864

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.48  E-value=5.8e-08  Score=86.62  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      |.-+.+...+...+    +  ...+|||||||+|-+++.++... +.++|+|+||++.+++++++|+..+
T Consensus       117 p~lD~fY~~i~~~i----~--~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~  179 (281)
T 3lcv_B          117 PHLDEFYRELFRHL----P--RPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRL  179 (281)
T ss_dssp             GGHHHHHHHHGGGS----C--CCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHhcc----C--CCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            44444555555544    1  24689999999999999999874 8899999999999999999998763

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.47  E-value=2e-07  Score=81.82  Aligned_cols=56  Identities=13%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +++.+++.+    ...++.+|||+|||+|.++..+++.   +.+|+|+|+|+++++.+++|++
T Consensus        17 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~   72 (255)
T 3tqs_A           17 VLQKIVSAI----HPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYN   72 (255)
T ss_dssp             HHHHHHHHH----CCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHT
T ss_pred             HHHHHHHhc----CCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHh
Confidence            345555555    1224568999999999999999986   2799999999999999999975

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.47  E-value=3.7e-07  Score=77.58  Aligned_cols=44  Identities=23%  Similarity=0.095  Sum_probs=40.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++.+|||+|||+|.++..++..+ |+.+|+|+|+|+.+++.|++|
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~   76 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR   76 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh
Confidence            45689999999999999999987 778999999999999999987

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.47  E-value=1.1e-07  Score=87.39  Aligned_cols=68  Identities=24%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+..+..++.+.+.+....    ...++.+|||+|||+|.+++.+++. + ..+|+|+|+| .+++.|++|++.
T Consensus        40 ~~l~d~~r~~~~~~~i~~~~----~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~a~~~~~~  107 (376)
T 3r0q_C           40 DMLSDRVRMDAYFNAVFQNK----HHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMADHARALVKA  107 (376)
T ss_dssp             HHHTCHHHHHHHHHHHHTTT----TTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS-TTHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHHHHhcc----ccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH-HHHHHHHHHHHH
Confidence            34444555666666665433    2235678999999999999999986 3 2599999999 999999999865

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.45  E-value=4.8e-07  Score=91.61  Aligned_cols=71  Identities=30%  Similarity=0.399  Sum_probs=54.9

Q ss_pred             CCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       166 ~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..+.+.| |.++..++.+++.+ ...   ++.+|||+|||+|.+++.+++..++..+|+|||+|+.+++.|+++++
T Consensus       697 e~gtFsP-PL~eqRle~LLelL-~~~---~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa  767 (950)
T 3htx_A          697 EAAFFKP-PLSKQRVEYALKHI-RES---SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLH  767 (950)
T ss_dssp             CCCCSSS-CHHHHHHHHHHHHH-HHS---CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhCcCCc-hHHHHHHHHHHHHh-ccc---CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhh
Confidence            3444554 66677777777776 221   45789999999999999999863244799999999999999998654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.45  E-value=4.8e-07  Score=81.62  Aligned_cols=46  Identities=20%  Similarity=0.173  Sum_probs=39.0

Q ss_pred             CCCcEEEeccCCcHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIA-IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~ia-i~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.++ +.+|+.  ++++|+|+|+|+++++.|++|+++
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~--~ga~V~gIDis~~~l~~Ar~~~~~  168 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHV--YGMRVNVVEIEPDIAELSRKVIEG  168 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHT--TCCEEEEEESSHHHHHHHHHHHHH
T ss_pred             CcCEEEEECCCccHHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHh
Confidence            5679999999998765 556653  679999999999999999999864

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.45  E-value=5.5e-07  Score=78.23  Aligned_cols=58  Identities=16%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      +...++..+ ......++.+|||+|||+|..+..+|...+++++|+|+|+|+.+++...
T Consensus        61 la~~ll~~l-~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~  118 (232)
T 3id6_C           61 LAGAILKGL-KTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELL  118 (232)
T ss_dssp             HHHHHHTTC-SCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHhhh-hhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH
Confidence            344444444 2222345679999999999999999998777889999999998865443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.45  E-value=2.6e-07  Score=85.55  Aligned_cols=64  Identities=23%  Similarity=0.137  Sum_probs=51.2

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC---------------------------------
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK---------------------------------  220 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~---------------------------------  220 (243)
                      |..|.+...++...    ...++.+|||+|||||.+++.+|... .+                                 
T Consensus       178 pl~e~lAa~ll~~~----~~~~~~~vlDp~CGSGt~lieaa~~~-~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~  252 (385)
T 3ldu_A          178 PIRETLAAGLIYLT----PWKAGRVLVDPMCGSGTILIEAAMIG-INMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKI  252 (385)
T ss_dssp             CCCHHHHHHHHHTS----CCCTTSCEEETTCTTCHHHHHHHHHH-TTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHhh----CCCCCCeEEEcCCCCCHHHHHHHHHH-hhhCCCcccccchhhcccCCHHHHHHHHHHHHHHh
Confidence            66777887776654    12235679999999999999999863 32                                 


Q ss_pred             -----cEEEEEeCCHHHHHHHHHHHHh
Q 026108          221 -----GSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       221 -----a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                           .+|+|+|+|+.|++.|++|++.
T Consensus       253 ~~~~~~~V~GvDid~~ai~~Ar~Na~~  279 (385)
T 3ldu_A          253 DNESKFKIYGYDIDEESIDIARENAEI  279 (385)
T ss_dssp             CCSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             hccCCceEEEEECCHHHHHHHHHHHHH
Confidence                 5799999999999999999875

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.45  E-value=3.2e-07  Score=80.48  Aligned_cols=48  Identities=23%  Similarity=0.464  Sum_probs=42.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|..++.+|..+ ++ .+|+|+|+|+.+++.+++|++++
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~-~~~~~v~avD~~~~~l~~~~~~~~~~  131 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLM-KNKGTIVAVEISKTRTKALKSNINRM  131 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHT-TTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CcCEEEEeCCCccHHHHHHHHHc-CCCCEEEEECCCHHHHHHHHHHHHHh
Confidence            45689999999999999999976 44 89999999999999999998753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.45  E-value=1.3e-06  Score=77.07  Aligned_cols=46  Identities=15%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+  +.+|+|+|+|+++++.|+++++.
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~  135 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLAS  135 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHT
T ss_pred             CcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh
Confidence            46789999999999999999986  47999999999999999998753

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.44  E-value=2e-07  Score=79.07  Aligned_cols=46  Identities=20%  Similarity=0.105  Sum_probs=40.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++..  ..+|+|+|+|+.+++.|++|+..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~  124 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGE  124 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhh
Confidence            35789999999999999998863  46999999999999999998753

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.44  E-value=1.9e-07  Score=86.72  Aligned_cols=46  Identities=24%  Similarity=0.266  Sum_probs=39.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++++|||||||+|.+++.+|+. |+ .+|+|||.|+ +++.|++|++.|
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~a-GA-~~V~ave~s~-~~~~a~~~~~~n  128 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQA-GA-RRVYAVEASA-IWQQAREVVRFN  128 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECST-THHHHHHHHHHT
T ss_pred             CCCEEEEeCCCccHHHHHHHHh-CC-CEEEEEeChH-HHHHHHHHHHHc
Confidence            4678999999999999998885 44 5899999996 789999998764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.44  E-value=3.2e-07  Score=82.39  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=43.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+|..++++++|+|+|+|+.+++.+++|+++
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~  165 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR  165 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence            456899999999999999999864458999999999999999999875

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.44  E-value=4.5e-07  Score=84.34  Aligned_cols=66  Identities=26%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC--------------------------------
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--------------------------------  220 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~--------------------------------  220 (243)
                      -|..|.+...++... .   ..++..+||.|||||.++|.+|... .+                                
T Consensus       183 Apl~e~lAa~ll~l~-~---~~~~~~vlDp~CGSGt~~ieaa~~~-~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~  257 (393)
T 3k0b_A          183 APIKETMAAALVLLT-S---WHPDRPFYDPVCGSGTIPIEAALIG-QNIAPGFNREFVSETWDWMPKQVWADARQEAEDL  257 (393)
T ss_dssp             CSCCHHHHHHHHHHS-C---CCTTSCEEETTCTTSHHHHHHHHHH-TTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHh-C---CCCCCeEEEcCCCCCHHHHHHHHHh-cCcCCCccccchhhccccCCHHHHHHHHHHHHHh
Confidence            366777887777654 1   1234679999999999999999864 33                                


Q ss_pred             ------cEEEEEeCCHHHHHHHHHHHHhC
Q 026108          221 ------GSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       221 ------a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                            .+|+|+|+|+.|++.|++|++.+
T Consensus       258 ~~~~~~~~V~GvDid~~al~~Ar~Na~~~  286 (393)
T 3k0b_A          258 ANYDQPLNIIGGDIDARLIEIAKQNAVEA  286 (393)
T ss_dssp             CCTTCCCCEEEEESCHHHHHHHHHHHHHT
T ss_pred             hcccCCceEEEEECCHHHHHHHHHHHHHc
Confidence                  46999999999999999999753

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.43  E-value=1.1e-07  Score=82.52  Aligned_cols=47  Identities=15%  Similarity=0.109  Sum_probs=38.5

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .++.+|||||||+|.+++.++.. + ..+|+|+|+|+.+++.|+++++.
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~-~-~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACD-S-FQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG-T-EEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCceEEEeCCCccHHHHHHHHh-h-hcceeeccccHHHHHHHHHHHhc
Confidence            35678999999999988877654 2 24799999999999999998643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.43  E-value=3.4e-07  Score=77.63  Aligned_cols=61  Identities=18%  Similarity=0.052  Sum_probs=46.6

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++..+.+.+.+...+ ..  ..++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|++|
T Consensus        22 ~~~~~~~~~~~~~~l-~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           22 RGSRELVKARLRRYI-PY--FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             TCCHHHHHHHHGGGG-GG--TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHH-hh--hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh
Confidence            344555666665555 21  123568999999999999999986   36899999999999999876

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.43  E-value=4.4e-07  Score=81.40  Aligned_cols=46  Identities=13%  Similarity=0.147  Sum_probs=41.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+.+|||||||+|.+++.+++.. +..+|++||+|+++++.|++|+.
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~  140 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLP  140 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhH
Confidence            35689999999999999999873 66899999999999999999864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.42  E-value=3e-07  Score=76.55  Aligned_cols=45  Identities=31%  Similarity=0.437  Sum_probs=40.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.++..   +.+|+|+|+|+.+++.|++|+..
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~   74 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARS   74 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHh
Confidence            3568999999999999999986   47999999999999999998753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.42  E-value=7.6e-07  Score=75.41  Aligned_cols=45  Identities=16%  Similarity=0.065  Sum_probs=40.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++...  ..+|+|+|+|+.+++.|++|+.
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~  137 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELA  137 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhc
Confidence            46789999999999999999874  4689999999999999999875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.41  E-value=5.1e-07  Score=80.33  Aligned_cols=57  Identities=21%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             HHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHH
Q 026108          180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       180 v~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p-~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+++.+ .   ..++.+|||+|||+|.++..|++.... +++|+|+|+|+++++.|++|.
T Consensus        31 ~~~iv~~~-~---~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~   88 (279)
T 3uzu_A           31 IDAIVAAI-R---PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF   88 (279)
T ss_dssp             HHHHHHHH-C---CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHhc-C---CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc
Confidence            45555554 1   224568999999999999999997511 144999999999999999983

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.41  E-value=5.5e-07  Score=83.59  Aligned_cols=66  Identities=24%  Similarity=0.222  Sum_probs=52.1

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCC--------------------------------
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--------------------------------  220 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~--------------------------------  220 (243)
                      -|..|.|...++... ..   .++..++|.|||||.++|.+|... .+                                
T Consensus       176 Apl~e~LAaall~l~-~~---~~~~~llDp~CGSGt~lIEAa~~a-~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~  250 (384)
T 3ldg_A          176 APIKENMAAAIILLS-NW---FPDKPFVDPTCGSGTFCIEAAMIG-MNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQ  250 (384)
T ss_dssp             CCCCHHHHHHHHHHT-TC---CTTSCEEETTCTTSHHHHHHHHHH-TTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHh-CC---CCCCeEEEeCCcCCHHHHHHHHHh-cCcCCCccccchhhhhccCCHHHHHHHHHHHHHh
Confidence            366777887777654 21   234679999999999999999864 33                                


Q ss_pred             ------cEEEEEeCCHHHHHHHHHHHHhC
Q 026108          221 ------GSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       221 ------a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                            .+|+|+|+|+.|++.|++|++.+
T Consensus       251 ~~~~~~~~v~GvDid~~al~~Ar~Na~~~  279 (384)
T 3ldg_A          251 ADYDIQLDISGFDFDGRMVEIARKNAREV  279 (384)
T ss_dssp             CCTTCCCCEEEEESCHHHHHHHHHHHHHT
T ss_pred             hhccCCceEEEEECCHHHHHHHHHHHHHc
Confidence                  46999999999999999999753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.40  E-value=3.8e-07  Score=81.37  Aligned_cols=56  Identities=11%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +++.+++.+ .   ..++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|++|++
T Consensus        30 i~~~i~~~~-~---~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~   85 (299)
T 2h1r_A           30 ILDKIIYAA-K---IKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCL   85 (299)
T ss_dssp             HHHHHHHHH-C---CCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-C---CCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHH
Confidence            345555544 1   224568999999999999999975   3699999999999999999975

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.40  E-value=1.9e-07  Score=81.68  Aligned_cols=59  Identities=12%  Similarity=0.089  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..+.+..++ .. ...++.+|||||||+|..++.++..  .+.+|+|+|+|+.+++.|+++++
T Consensus        57 ~~~~l~~~l-~~-~~~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           57 KLRCLAQTF-AT-GEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             HHHHHHHHH-HT-SCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHHHh-CC-CCCCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHh
Confidence            344455544 21 1224578999999999976655553  35799999999999999998654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.40  E-value=6.2e-07  Score=79.41  Aligned_cols=56  Identities=16%  Similarity=0.295  Sum_probs=45.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +++.+++.+    ...++.+|||+|||+|.++..++...   .+|+|+|+|+.+++.|++|++
T Consensus        16 i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~   71 (285)
T 1zq9_A           16 IINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQ   71 (285)
T ss_dssp             HHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHT
T ss_pred             HHHHHHHhc----CCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHH
Confidence            455555554    12245689999999999999999872   699999999999999999875

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.40  E-value=5e-07  Score=81.93  Aligned_cols=45  Identities=22%  Similarity=0.323  Sum_probs=39.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++. + ..+|+|+|+|+ +++.|++|++.
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~  108 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRL  108 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHH
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHH
Confidence            4568999999999999999986 3 36999999996 99999999864

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.39  E-value=2.9e-07  Score=85.85  Aligned_cols=47  Identities=21%  Similarity=-0.016  Sum_probs=42.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhC
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +.+|||+|||+|.+++.+|++. .+ .+|+++|+++.|++.+++|++.|
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~-~ga~~V~avDi~~~av~~~~~N~~~N  100 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLET-SCVEKAYANDISSKAIEIMKENFKLN  100 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHC-SCEEEEEEECSCHHHHHHHHHHHHHT
T ss_pred             CCEEEECCCcccHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            4689999999999999999974 34 68999999999999999999875

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.39  E-value=1.2e-07  Score=81.85  Aligned_cols=45  Identities=16%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+.+|||||||+|.++..+++. +. .+|+|+|+|+.+++.|++|..
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g~-~~V~gvDis~~ml~~a~~~~~   81 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-GA-KLVYALDVGTNQLAWKIRSDE   81 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TC-SEEEEECSSCCCCCHHHHTCT
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-CC-CEEEEEcCCHHHHHHHHHhCc
Confidence            4568999999999999999986 33 599999999999999888643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.39  E-value=6.3e-07  Score=73.59  Aligned_cols=41  Identities=29%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             cEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       198 rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~   72 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQ   72 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHH
Confidence            8999999999999999875   3699999999999999999875

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.39  E-value=3.4e-07  Score=77.61  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=38.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..+++.. +  +|+|+|+|+.+++.|++|+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~-~--~v~gvD~s~~~~~~a~~~~   98 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFF-P--RVIGLDVSKSALEIAAKEN   98 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHS-S--CEEEEESCHHHHHHHHHHS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhC-C--CEEEEECCHHHHHHHHHhC
Confidence            45689999999999999999974 3  9999999999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.38  E-value=9.3e-07  Score=76.77  Aligned_cols=44  Identities=27%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|+++++.
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~  112 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEA  112 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHh
Confidence            568999999999999999985   47999999999999999998753

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.38  E-value=1.6e-07  Score=82.91  Aligned_cols=48  Identities=13%  Similarity=0.036  Sum_probs=41.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+|....++.+|+|+|+|+.+++.|++|++.
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~  165 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG  165 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh
Confidence            456899999999999999962223788999999999999999999864

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.38  E-value=4.1e-07  Score=83.81  Aligned_cols=47  Identities=30%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|.+++.+|+. + ..+|+|+|+|+.+++.|++|++.|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n  263 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLN  263 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHc
Confidence            3568999999999999999985 2 359999999999999999999754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.37  E-value=3.8e-07  Score=74.92  Aligned_cols=45  Identities=18%  Similarity=0.200  Sum_probs=39.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.+++.+++. ++ .+|+|+|+|+.+++.|++|+.
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~   86 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYA   86 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhcc
Confidence            3568999999999999999986 34 399999999999999999864

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.37  E-value=3.2e-07  Score=82.06  Aligned_cols=44  Identities=16%  Similarity=-0.011  Sum_probs=36.7

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+|||||||+|.....++..  ..++|+|+|+|+.+|+.|++++.
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~   92 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYN   92 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHH
Confidence            578999999999766666654  34799999999999999998764

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.37  E-value=2.1e-07  Score=81.76  Aligned_cols=44  Identities=18%  Similarity=0.150  Sum_probs=39.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH-------HHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP-------LAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~-------~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|.+++.+|+.   +.+|+|+|+|+       ++++.|++|++.
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~  134 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPET  134 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHH
T ss_pred             cCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHh
Confidence            457999999999999999985   36999999999       999999998754

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.37  E-value=4.9e-07  Score=74.89  Aligned_cols=43  Identities=26%  Similarity=0.186  Sum_probs=38.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc
Confidence            3568999999999999999985   479999999999999999985

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.37  E-value=2.6e-07  Score=78.01  Aligned_cols=44  Identities=20%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|.++..++.   ++.+|+|+|+|+.+++.|++|+..
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~  110 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGS  110 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhc
Confidence            45899999999999999976   358999999999999999999753

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.37  E-value=7.2e-07  Score=75.80  Aligned_cols=44  Identities=27%  Similarity=0.335  Sum_probs=39.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++...   .+|+|+|+|+.+++.|++|++
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~   64 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQ   64 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHH
Confidence            46789999999999999999863   599999999999999999875

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.37  E-value=7.9e-07  Score=74.49  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+.+.+.+...+ ... ..++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|++|+..
T Consensus        20 ~~~~~~~~~~~l-~~~-~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~   81 (246)
T 1y8c_A           20 YKKWSDFIIEKC-VEN-NLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRS   81 (246)
T ss_dssp             HHHHHHHHHHHH-HTT-TCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHh-CCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhh
Confidence            344556666655 221 124578999999999999999886   36999999999999999998753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.36  E-value=7.7e-07  Score=75.72  Aligned_cols=44  Identities=25%  Similarity=0.283  Sum_probs=39.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..+++. ++ .+|+|+|+|+.+++.|++++
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~   87 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEH-GA-KKVLGIDLSERMLTEAKRKT   87 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHhh
Confidence            5678999999999999999986 33 39999999999999999885

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.36  E-value=4.7e-07  Score=82.32  Aligned_cols=45  Identities=18%  Similarity=0.336  Sum_probs=39.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.  +..+|+|+|+| ++++.|++|++.
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~  110 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKA  110 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHH
T ss_pred             CCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHH
Confidence            3568999999999999999986  34699999999 599999999875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.36  E-value=4.2e-07  Score=74.75  Aligned_cols=45  Identities=16%  Similarity=0.122  Sum_probs=37.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.+++.++..  ++.+|+|+|+|+.+++.|++|++
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~   67 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSR   67 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHH
Confidence            3568999999999986555544  45799999999999999999875

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.36  E-value=5.3e-07  Score=79.99  Aligned_cols=55  Identities=13%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +++.+++.+ .   ..++ +|||+|||+|.++..+++.   +.+|+|+|+|+++++.+++|+.
T Consensus        35 i~~~Iv~~~-~---~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~   89 (271)
T 3fut_A           35 HLRRIVEAA-R---PFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS   89 (271)
T ss_dssp             HHHHHHHHH-C---CCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHHhc-C---CCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC
Confidence            345555554 1   2245 8999999999999999986   2799999999999999999864

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.35  E-value=2.9e-07  Score=86.35  Aligned_cols=44  Identities=25%  Similarity=0.145  Sum_probs=40.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||||||+|..++.+|+.   +.+|+|||+|+.+++.|++|++.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~  137 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPL  137 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHH
Confidence            578999999999999999875   37999999999999999999874

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.35  E-value=4.1e-07  Score=83.61  Aligned_cols=46  Identities=26%  Similarity=0.141  Sum_probs=41.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|.+++.+|..   ..+|+|+|+|+.+++.|++|++.|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n  254 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLN  254 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999999986   379999999999999999998754

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.35  E-value=9.5e-07  Score=74.15  Aligned_cols=56  Identities=21%  Similarity=0.236  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+.+.+...+    .  ++.+|||+|||+|.++..+++.    .+|+|+|+|+.+++.|++|+..
T Consensus        21 ~~~~~~~~~~~----~--~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~   76 (243)
T 3d2l_A           21 PEWVAWVLEQV----E--PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAME   76 (243)
T ss_dssp             HHHHHHHHHHS----C--TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc----C--CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhh
Confidence            34555555544    1  2468999999999999998763    6999999999999999999753

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.35  E-value=8.5e-07  Score=79.64  Aligned_cols=56  Identities=13%  Similarity=0.247  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +++.+++.+    ...++.+|||+|||+|.++..+++.   ..+|+|||+|+++++.|++|++
T Consensus        38 i~~~Iv~~l----~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~   93 (295)
T 3gru_A           38 FVNKAVESA----NLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKE   93 (295)
T ss_dssp             HHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH
T ss_pred             HHHHHHHhc----CCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc
Confidence            455555554    1224568999999999999999986   3799999999999999999874

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.34  E-value=2.8e-07  Score=79.50  Aligned_cols=55  Identities=18%  Similarity=0.305  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      .+.+.+.+.+ .   ..++.+|||+|||+|.+++.++.   ++.+|+|+|+|+.+++.|+++
T Consensus        21 ~~~~~l~~~~-~---~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~   75 (261)
T 3ege_A           21 RIVNAIINLL-N---LPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVH   75 (261)
T ss_dssp             HHHHHHHHHH-C---CCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCC
T ss_pred             HHHHHHHHHh-C---CCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhc
Confidence            4566666665 1   22457899999999999999987   458999999999999887654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.34  E-value=8.4e-07  Score=79.95  Aligned_cols=49  Identities=24%  Similarity=0.262  Sum_probs=44.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|..++.+|..+++.++|+|+|+++.+++.+++|++++
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~  150 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA  150 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            4578999999999999999997655689999999999999999999863

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.34  E-value=6.3e-07  Score=77.51  Aligned_cols=46  Identities=26%  Similarity=0.366  Sum_probs=40.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|++|+..
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~  109 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARN  109 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHh
Confidence            4568999999999999998886  346999999999999999998754

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.33  E-value=5.6e-07  Score=85.42  Aligned_cols=48  Identities=21%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+|..++..++|+|+|+|+.+++.+++|+++
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r  152 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER  152 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            467899999999999999999874457999999999999999999975

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.33  E-value=9.6e-07  Score=75.93  Aligned_cols=45  Identities=22%  Similarity=0.292  Sum_probs=40.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC
Confidence            45689999999999999999975 6789999999999999999874

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.33  E-value=1e-06  Score=79.94  Aligned_cols=60  Identities=22%  Similarity=0.250  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+.+.+...+ .   ..++.+|||+|||+|.+++.+++.  +..+|+|+|+|+ +++.|++|++.
T Consensus        35 ~~~y~~~i~~~l-~---~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~   94 (348)
T 2y1w_A           35 TGTYQRAILQNH-T---DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKS   94 (348)
T ss_dssp             HHHHHHHHHHTG-G---GTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-c---cCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHH
Confidence            334455555544 1   124578999999999999999985  346999999996 78999998764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.32  E-value=6.3e-07  Score=73.63  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=37.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|++|.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~   83 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH   83 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC
Confidence            467999999999999999985   369999999999999999874

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.32  E-value=9.8e-07  Score=76.96  Aligned_cols=45  Identities=24%  Similarity=0.272  Sum_probs=40.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+++.+  +.+|+|+|+|+.+++.|+++++
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~  126 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNN  126 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHH
Confidence            45789999999999999999986  4699999999999999999874

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.32  E-value=9.2e-07  Score=75.81  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=38.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++..
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~   93 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP   93 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC
Confidence            468999999999999999886   3699999999999999999753

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.31  E-value=6.5e-07  Score=74.36  Aligned_cols=44  Identities=11%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|++++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~   88 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP   88 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC
Confidence            3568999999999999999985   4799999999999999999853

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.31  E-value=4e-07  Score=79.48  Aligned_cols=55  Identities=11%  Similarity=0.151  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +++.+.+.+ .   ..++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.+++|
T Consensus        19 i~~~iv~~~-~---~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           19 VLKKIAEEL-N---IEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             HHHHHHHHT-T---CCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS
T ss_pred             HHHHHHHhc-C---CCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc
Confidence            455555554 1   224568999999999999999985  347999999999999999876

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.31  E-value=6.2e-07  Score=82.11  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=41.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+| |+|.+++.+++. +++.+|+|+|+|+.+++.|++|+++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~  217 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANE  217 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH
Confidence            457899999 999999999987 4667999999999999999999874

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.30  E-value=8.1e-07  Score=79.99  Aligned_cols=45  Identities=22%  Similarity=0.351  Sum_probs=38.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.  +..+|+|+|+| .+++.|++|++.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~   82 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVEL   82 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHH
T ss_pred             CCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHH
Confidence            3568999999999999999985  33699999999 699999999864

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.30  E-value=5.5e-07  Score=79.44  Aligned_cols=46  Identities=15%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+.+|||||||+|.++..+++.. +..+|++||++++++++|++|..
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~  120 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLP  120 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhH
Confidence            35689999999999999999863 55799999999999999999873

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.29  E-value=4.1e-07  Score=77.42  Aligned_cols=46  Identities=15%  Similarity=0.090  Sum_probs=39.9

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .++.+|||+|||+|.+++.++... . .+|+|+|+|+.+++.|+++++
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHh
Confidence            356789999999999999998762 3 599999999999999998874

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.29  E-value=2e-06  Score=71.90  Aligned_cols=43  Identities=14%  Similarity=0.179  Sum_probs=38.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|+++.
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC
Confidence            35689999999999999999985   39999999999999999874

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.29  E-value=1.2e-06  Score=77.33  Aligned_cols=44  Identities=16%  Similarity=0.108  Sum_probs=39.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+.+|||||||+|-+++.++    ++.+++|+|||+.+++++++|+..
T Consensus       105 ~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~  148 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFARE  148 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHh
Confidence            45789999999999999886    458999999999999999999865

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.29  E-value=7.1e-07  Score=73.71  Aligned_cols=41  Identities=22%  Similarity=0.170  Sum_probs=37.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|+++
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT
T ss_pred             CCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh
Confidence            468999999999999999885   46999999999999999986

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.29  E-value=1.8e-06  Score=77.03  Aligned_cols=45  Identities=13%  Similarity=0.085  Sum_probs=40.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||||||+|.++..+++.. +..+|++||+|+.+++.|++|+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~  139 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHF  139 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHh
Confidence            35689999999999999999863 5679999999999999999986

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.28  E-value=7e-07  Score=78.19  Aligned_cols=56  Identities=14%  Similarity=0.181  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +++.+++.+ .   ..++.+|||+|||+|.++. +++ . ...+|+|+|+|+++++.+++|.+
T Consensus         9 i~~~iv~~~-~---~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~   64 (252)
T 1qyr_A            9 VIDSIVSAI-N---PQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             HHHHHHHHH-C---CCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTT
T ss_pred             HHHHHHHhc-C---CCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhc
Confidence            455555554 1   2245679999999999999 654 2 33349999999999999998764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.28  E-value=1.2e-06  Score=73.58  Aligned_cols=53  Identities=13%  Similarity=0.280  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +.+.+...+ .     ++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|++|.
T Consensus        43 ~~~~l~~~~-~-----~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~   95 (242)
T 3l8d_A           43 IIPFFEQYV-K-----KEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG   95 (242)
T ss_dssp             HHHHHHHHS-C-----TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT
T ss_pred             HHHHHHHHc-C-----CCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc
Confidence            455555544 1     3568999999999999999986   469999999999999999874

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.28  E-value=1.2e-06  Score=73.44  Aligned_cols=45  Identities=24%  Similarity=0.194  Sum_probs=39.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.|+++..
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~   87 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH-GA-SYVLGLDLSEKMLARARAAGP   87 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHTSC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC-CC-CeEEEEcCCHHHHHHHHHhcc
Confidence            4568999999999999999986 22 399999999999999998753

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.27  E-value=1.8e-06  Score=71.08  Aligned_cols=41  Identities=20%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~   86 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR   86 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh
Confidence            3468999999999999999987   3799999999999999986

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.27  E-value=8.5e-07  Score=84.53  Aligned_cols=48  Identities=19%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.+|..++++++|+|+|+|+.+++.+++|+++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r  164 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR  164 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            456899999999999999999864458999999999999999999875

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.27  E-value=3e-07  Score=80.58  Aligned_cols=51  Identities=25%  Similarity=0.302  Sum_probs=40.5

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +++.+....    +  .+.+|||||||+|.++..|+..   +.+|+|||+|+.+++.|++
T Consensus        29 l~~~l~~~~----~--~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~   79 (257)
T 4hg2_A           29 LFRWLGEVA----P--ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR   79 (257)
T ss_dssp             HHHHHHHHS----S--CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC
T ss_pred             HHHHHHHhc----C--CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh
Confidence            455555543    1  2468999999999999999986   3699999999999998765

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.26  E-value=1.7e-06  Score=75.00  Aligned_cols=43  Identities=28%  Similarity=0.377  Sum_probs=38.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..++.   ++.+|+|+|+|+.+++.|+++.
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~   99 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY   99 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC
Confidence            456899999999999999998   3579999999999999999874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.26  E-value=1.7e-06  Score=76.51  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=39.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|+++..
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~   78 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYE   78 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHH
Confidence            3568999999999999999884  46899999999999999999864

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.25  E-value=1.6e-06  Score=73.61  Aligned_cols=43  Identities=23%  Similarity=0.346  Sum_probs=38.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|+
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~   81 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI   81 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh
Confidence            4568999999999999999885   479999999999999999985

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.25  E-value=1.6e-06  Score=69.79  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=39.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|++|..
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~   89 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP   89 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC
Confidence            3568999999999999999985   3699999999999999999853

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.23  E-value=7e-07  Score=71.33  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=37.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|+++
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh
Confidence            35689999999999999999874   4999999999999999987

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.23  E-value=2.8e-06  Score=75.49  Aligned_cols=60  Identities=20%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       175 ~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      -.+.|++.++... .    .++..|||+|||||.+++++++.   +.+++|+|+++++++.|++|++.
T Consensus       220 ~p~~l~~~~i~~~-~----~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          220 FPLELAERLVRMF-S----FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             SCHHHHHHHHHHH-C----CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHH
Confidence            3345666666655 1    24568999999999999998874   47999999999999999999864

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.22  E-value=1.3e-06  Score=75.05  Aligned_cols=44  Identities=20%  Similarity=0.164  Sum_probs=39.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|+++..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC
Confidence            4568999999999999999875   3699999999999999998853

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.21  E-value=1.1e-06  Score=77.46  Aligned_cols=44  Identities=14%  Similarity=0.159  Sum_probs=39.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .+.+|||||||+|.++..+++.  +..+|++||+|+.+++.|++|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH
Confidence            3568999999999999999986  5579999999999999999987

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.21  E-value=3.6e-06  Score=75.71  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=41.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+ ++.+++++|+ +.+++.|++|++.
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~  228 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKD  228 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHH
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHh
Confidence            45689999999999999999985 8899999999 9999999999764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.20  E-value=2.3e-06  Score=77.24  Aligned_cols=46  Identities=22%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.+ |+.+++++|+ +.+++.|++|+..
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~  227 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFAD  227 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHh
Confidence            45789999999999999999986 8889999999 9999999998754

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.20  E-value=2.3e-06  Score=75.62  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=41.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||||||+|.++..+++.. +..+|++||+|+.+++.|++|..
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~  123 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFK  123 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhH
Confidence            45789999999999999999863 66899999999999999999864

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.20  E-value=4.3e-06  Score=74.05  Aligned_cols=45  Identities=24%  Similarity=0.252  Sum_probs=41.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +..+|||+|||+|.++..+++.+ |+.+|+++|+| .+++.|++|+.
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~  209 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENAR  209 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHH
Confidence            45789999999999999999986 78899999999 99999999875

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.19  E-value=2e-06  Score=75.67  Aligned_cols=44  Identities=18%  Similarity=0.262  Sum_probs=39.1

Q ss_pred             CcEEEeccCC---cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          197 GFWVDLGTGS---GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       197 ~rVLDLGtGS---G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+|||||||+   |.+...+++.. |+++|+++|+|+.+++.|++++.
T Consensus        79 ~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~  125 (274)
T 2qe6_A           79 SQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLA  125 (274)
T ss_dssp             CEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcC
Confidence            5799999999   99887777764 88999999999999999999874

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.18  E-value=1.3e-06  Score=78.36  Aligned_cols=46  Identities=17%  Similarity=0.147  Sum_probs=41.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+.+|||||||+|.++..+++.. +..+|++||+|+.+++.|++|..
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~  122 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMP  122 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhH
Confidence            34689999999999999999874 56899999999999999999864

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.18  E-value=3.2e-06  Score=76.33  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..+|||+|||+|.++..+++.+ |+.+|+++|+ +.+++.|++|++.
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~  235 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE  235 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHH
T ss_pred             CCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHh
Confidence            45689999999999999999986 8889999999 9999999998754

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.18  E-value=4.8e-06  Score=78.22  Aligned_cols=47  Identities=21%  Similarity=0.280  Sum_probs=42.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~-a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.++..+ ++ ++|+|+|+|+.+++.+++|+++
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~-~~~~~v~a~D~s~~~l~~~~~~~~~  306 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELM-KNKGKIYAFDVDKMRMKRLKDFVKR  306 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHT-TTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCccHHHHHHHHHc-CCCCEEEEEcCCHHHHHHHHHHHHH
Confidence            45689999999999999999986 44 7999999999999999999875

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.16  E-value=3.6e-06  Score=73.72  Aligned_cols=46  Identities=17%  Similarity=0.109  Sum_probs=35.9

Q ss_pred             CCCcEEEeccCCcHHHHHH----HHHhCCCcEE--EEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGI----ARVLGSKGSI--IAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~L----A~~~~p~a~V--~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..+    +..+ ++..|  +|+|+|+++++.|+++++
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~  103 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVA  103 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHH
Confidence            3568999999999876543    3333 55654  999999999999999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.16  E-value=2.9e-06  Score=77.07  Aligned_cols=45  Identities=18%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+|||+|||+|.+++.+++.+ |+.+|+++|+ +.+++.|++|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~  224 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAG  224 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHh
Confidence            4689999999999999999986 8899999999 9999999998753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.16  E-value=3.9e-06  Score=83.39  Aligned_cols=67  Identities=18%  Similarity=0.063  Sum_probs=52.7

Q ss_pred             CccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHh-----------------------------------
Q 026108          173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL-----------------------------------  217 (243)
Q Consensus       173 Rp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~-----------------------------------  217 (243)
                      -|..|.|...++... ..   .++..+||.|||||.++|.+|...                                   
T Consensus       172 apl~e~LAa~ll~~~-~~---~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~  247 (703)
T 3v97_A          172 APIKETLAAAIVMRS-GW---QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR  247 (703)
T ss_dssp             CSSCHHHHHHHHHHT-TC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhh-CC---CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence            477788888877755 21   234679999999999999998752                                   


Q ss_pred             ------CCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          218 ------GSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       218 ------~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                            .+..+|+|+|+++.|++.|++|++++
T Consensus       248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~a  279 (703)
T 3v97_A          248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLA  279 (703)
T ss_dssp             HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHT
T ss_pred             hhhccccCCccEEEEECCHHHHHHHHHHHHHc
Confidence                  02258999999999999999999763

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.15  E-value=3.8e-06  Score=78.36  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=42.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|..++.++... ++++|+|+|+|+.+++.+++|+++
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~  292 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKR  292 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHH
T ss_pred             CcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHH
Confidence            45689999999999999999985 668999999999999999999875

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.13  E-value=2.7e-06  Score=77.23  Aligned_cols=44  Identities=20%  Similarity=0.111  Sum_probs=40.7

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+|||||||+|.++..+++.+ |+.+|++||+++++++.|++|..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~  134 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFD  134 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSC
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcc
Confidence            489999999999999999976 78899999999999999999864

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.12  E-value=1.6e-06  Score=71.05  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCC--CcEEEEEeCCHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGS--KGSIIAVDLNPL  231 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p--~a~V~avDiS~~  231 (243)
                      ++.+|||||||+|.+++.+++.+ +  +.+|+|+|+|+.
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~-~~~~~~v~gvD~s~~   59 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERT-KNYKNKIIGIDKKIM   59 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHT-TTSCEEEEEEESSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHc-CCCCceEEEEeCCcc
Confidence            34689999999999999999986 5  689999999973

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.10  E-value=9.9e-06  Score=73.73  Aligned_cols=46  Identities=17%  Similarity=0.138  Sum_probs=41.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..+|||+|||+|.+++.+++.+ |+.+++++|+ +.+++.|++++..
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~  247 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTG  247 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH
T ss_pred             cCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhh
Confidence            45789999999999999999986 8899999999 9999999998753

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.08  E-value=1.8e-06  Score=79.07  Aligned_cols=41  Identities=15%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      +.+|||+|||+|.+++.++++++++.+|+|+|+++.+++.|
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a   80 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP   80 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence            45899999999999999998764568999999999988765

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.05  E-value=1.4e-05  Score=65.85  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..+      +. +|+|+|+|+.+++.|++|.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l------~~~~v~~vD~s~~~~~~a~~~~   76 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL------PYPQKVGVEPSEAMLAVGRRRA   76 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC------CCSEEEEECCCHHHHHHHHHHC
T ss_pred             CCCeEEEECCCCCHhHHhC------CCCeEEEEeCCHHHHHHHHHhC
Confidence            4678999999999998876      24 9999999999999999874

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.04  E-value=3.9e-06  Score=69.32  Aligned_cols=43  Identities=23%  Similarity=0.216  Sum_probs=38.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..++..  + .+|+|+|+|+.+++.|++|.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~   74 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL   74 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC
Confidence            4568999999999999999885  3 79999999999999998764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.04  E-value=3.5e-06  Score=68.59  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=31.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCC--------cEEEEEeCCHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSK--------GSIIAVDLNPL  231 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~--------a~V~avDiS~~  231 (243)
                      ++.+|||+|||+|.+++.+++.+++.        .+|+|+|+|+.
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            45789999999999999999986332        79999999974

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.04  E-value=2.4e-06  Score=76.66  Aligned_cols=42  Identities=17%  Similarity=0.171  Sum_probs=36.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      .+.+|||+|||+|.++..+++.  ...+|+|||+|+.+|+.+.+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHH
T ss_pred             cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHH
Confidence            4568999999999999999885  33699999999999998654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.04  E-value=6.8e-06  Score=72.42  Aligned_cols=42  Identities=26%  Similarity=0.199  Sum_probs=36.8

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+|||+|||+|..++.+|..   +++|+++|+++.+.+++++|++
T Consensus        90 ~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~  131 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLA  131 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHH
Confidence            68999999999999999996   3589999999988777777754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.03  E-value=1.8e-07  Score=80.53  Aligned_cols=44  Identities=14%  Similarity=0.345  Sum_probs=38.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|.++..++.. +  .+|+|+|+|+++++.|++|++
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~-~--~~v~~id~~~~~~~~a~~~~~   72 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKI-S--KQVTSIELDSHLFNLSSEKLK   72 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH-S--SEEEESSSSCSSSSSSSCTTT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHhc
Confidence            4568999999999999999987 2  799999999999999888753

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.01  E-value=8.9e-06  Score=72.51  Aligned_cols=45  Identities=27%  Similarity=0.216  Sum_probs=41.2

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+|||+|||+|.+++.+++.+ |+.+++++|+ +.+++.|++++..
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~  214 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLD  214 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH
T ss_pred             CCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhh
Confidence            4689999999999999999986 8899999999 9999999998753

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.99  E-value=7e-06  Score=73.55  Aligned_cols=45  Identities=20%  Similarity=0.154  Sum_probs=41.1

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|+++++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~  224 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHA  224 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHh
Confidence            5789999999999999999986 8899999999 8899999998764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.99  E-value=5.6e-06  Score=65.02  Aligned_cols=38  Identities=37%  Similarity=0.485  Sum_probs=33.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA  233 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL  233 (243)
                      ++.+|||+|||+|.++..+++.++++.+|+|+|+|+ ++
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~   59 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD   59 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc
Confidence            456899999999999999999865668999999998 54

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.98  E-value=8e-06  Score=76.48  Aligned_cols=65  Identities=25%  Similarity=0.360  Sum_probs=48.1

Q ss_pred             ccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC------------CCcEEEEEeCCHHHHHHHH
Q 026108          170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG------------SKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       170 liPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~------------p~a~V~avDiS~~AL~~Ar  237 (243)
                      +.|++..+++++    .+ .   ...+.+|||.|||||.+.+.+++.+.            .+.+++|+|+++.++++|+
T Consensus       154 yTP~~v~~~mv~----~l-~---~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~  225 (445)
T 2okc_A          154 FTPRPLIQAMVD----CI-N---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS  225 (445)
T ss_dssp             CCCHHHHHHHHH----HH-C---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             cCcHHHHHHHHH----Hh-C---CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHH
Confidence            456655555544    33 1   12346899999999999999987631            2358999999999999999


Q ss_pred             HHHHh
Q 026108          238 FNAQR  242 (243)
Q Consensus       238 ~Na~~  242 (243)
                      .|+..
T Consensus       226 ~nl~l  230 (445)
T 2okc_A          226 MNLYL  230 (445)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.98  E-value=8.1e-06  Score=74.98  Aligned_cols=42  Identities=21%  Similarity=0.216  Sum_probs=37.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++.+|||+|||+|.++..++..   +.+|+|+|+|+.+++.|+++
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc
Confidence            4678999999999999999985   36999999999999999875

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.95  E-value=1e-05  Score=71.95  Aligned_cols=43  Identities=26%  Similarity=0.281  Sum_probs=40.0

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++|+.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~  211 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLS  211 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTH
T ss_pred             CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHh
Confidence            689999999999999999986 8889999999 999999999864

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.91  E-value=3e-05  Score=67.53  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +.|++.++... .    .++..|||.+||||..++++++.   +.+++|+|+++.+++.|++|++.+
T Consensus       199 ~~l~~~~i~~~-~----~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          199 RDLIERIIRAS-S----NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             HHHHHHHHHHH-C----CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhc
Confidence            45666666654 1    24568999999999999998774   479999999999999999998753

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.86  E-value=2.3e-05  Score=75.67  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=49.3

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC-----------------CcEEEEEeCCHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----------------KGSIIAVDLNPL  231 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p-----------------~a~V~avDiS~~  231 (243)
                      .+.|++..+++++.+.        ..++.+|+|.|||||.+.+.+++.+..                 ..+++|+|+++.
T Consensus       151 fyTP~~iv~~mv~~l~--------p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~  222 (541)
T 2ar0_A          151 YFTPRPLIKTIIHLLK--------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  222 (541)
T ss_dssp             CCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             eeCCHHHHHHHHHHhc--------cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence            4567766666554431        123568999999999999999876421                 137999999999


Q ss_pred             HHHHHHHHHHh
Q 026108          232 AAAVAAFNAQR  242 (243)
Q Consensus       232 AL~~Ar~Na~~  242 (243)
                      ++++|+.|+..
T Consensus       223 ~~~lA~~nl~l  233 (541)
T 2ar0_A          223 TRRLALMNCLL  233 (541)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999999754

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.85  E-value=1.6e-05  Score=76.97  Aligned_cols=70  Identities=19%  Similarity=0.205  Sum_probs=54.3

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~--p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+.|++.++++++.+....    .+..+.+|+|.|||||.+.+.+++.+.  ...+++|+|+++.++++|+.|+..
T Consensus       199 fyTP~~Vv~lmv~ll~~~~----~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l  270 (542)
T 3lkd_A          199 FYTPQPVAKLMTQIAFLGR----EDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL  270 (542)
T ss_dssp             CCCCHHHHHHHHHHHHTTC----TTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ecccHHHHHHHHHHHhccc----CCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH
Confidence            4668888888777654321    122456899999999999999988751  246899999999999999999754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.80  E-value=1.6e-05  Score=76.90  Aligned_cols=64  Identities=22%  Similarity=0.344  Sum_probs=49.7

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC---------------CcEEEEEeCCHHHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---------------KGSIIAVDLNPLAA  233 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p---------------~a~V~avDiS~~AL  233 (243)
                      .+.|++.++++++.+..         ...+|+|.|||||.+.+.+++.+ .               ..+++|+|+++.++
T Consensus       227 fyTP~~Vv~lmv~ll~p---------~~~~VlDPaCGSG~fLi~a~~~l-~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~  296 (544)
T 3khk_A          227 YYTPKSIVTLIVEMLEP---------YKGRVYDPAMGSGGFFVSSDKFI-EKHANVKHYNASEQKKQISVYGQESNPTTW  296 (544)
T ss_dssp             TCCCHHHHHHHHHHHCC---------CSEEEEESSCTTCHHHHHHHHHH-HHHHHHHTSCHHHHGGGEEEEECCCCHHHH
T ss_pred             EeCCHHHHHHHHHHHhc---------CCCeEeCcccCcCcHHHHHHHHH-HHhccccccchHHHhhhceEEEEeCCHHHH
Confidence            35688777777765421         12389999999999999887653 1               46899999999999


Q ss_pred             HHHHHHHHh
Q 026108          234 AVAAFNAQR  242 (243)
Q Consensus       234 ~~Ar~Na~~  242 (243)
                      ++|+.|+..
T Consensus       297 ~lA~~Nl~l  305 (544)
T 3khk_A          297 KLAAMNMVI  305 (544)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999864

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.77  E-value=1.9e-05  Score=64.48  Aligned_cols=60  Identities=17%  Similarity=0.156  Sum_probs=42.4

Q ss_pred             CCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCc-HHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          167 EGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG-AIAIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       167 ~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG-~iai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      ..-++|+  -.-|.|++.+.+..      ..+.+|||+|||+| .+|..||..  .+..|+++|+++.|++
T Consensus        11 ~~~~~~~~~~m~e~LaeYI~~~~------~~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           11 SSGLVPRGSHMWNDLAVYIIRCS------GPGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHS------CSSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSSTT
T ss_pred             cCCcccchhhHHHHHHHHHHhcC------CCCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCccccc
Confidence            3446676  22344555554432      13468999999999 699999985  3589999999998764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.77  E-value=1.1e-05  Score=70.87  Aligned_cols=43  Identities=7%  Similarity=-0.246  Sum_probs=38.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .+.+|||||||+|.++..+++.  + .+|++||+++++++.|++|.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~  114 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFF  114 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTS
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHH
Confidence            3468999999999999999885  4 79999999999999998875

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.76  E-value=2.5e-05  Score=78.96  Aligned_cols=70  Identities=14%  Similarity=0.108  Sum_probs=50.9

Q ss_pred             ccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC--CCcEEEEEeCCHHHHHHH--HHHHH
Q 026108          170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVA--AFNAQ  241 (243)
Q Consensus       170 liPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~--p~a~V~avDiS~~AL~~A--r~Na~  241 (243)
                      +.|+...+++++.+...+ . ....++.+|||.|||||.+.+.+++.++  ...+++|+|+++.+++.|  +.|+.
T Consensus       298 YTP~eLA~lMVeLA~ill-~-~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~  371 (878)
T 3s1s_A          298 PTDIELGKVLSIISQHIL-G-RPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLL  371 (878)
T ss_dssp             SCCHHHHHHHHHHHHHHH-C-SCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHhhhc-c-ccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHH
Confidence            456666677666533323 1 1112356899999999999999998752  135899999999999999  87764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.75  E-value=1.3e-05  Score=66.79  Aligned_cols=34  Identities=18%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      ++.+|||||||+|.++..+++.   +++|+|+|+++.
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~   58 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEM   58 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCC
T ss_pred             CCCEEEEEeecCCHHHHHHHHc---CCcEEEEecccc
Confidence            4578999999999999999985   479999999973

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.71  E-value=2.8e-05  Score=69.43  Aligned_cols=44  Identities=20%  Similarity=0.349  Sum_probs=34.8

Q ss_pred             CcEEEeccCC---cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          197 GFWVDLGTGS---GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       197 ~rVLDLGtGS---G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .+|||||||.   |.+.. ++.+..|+++|++||.|+.+|+.|++++.
T Consensus        80 ~q~LDLGcG~pT~~~~~~-la~~~~P~arVv~VD~sp~mLa~Ar~~l~  126 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHE-IAQSVAPESRVVYVDNDPIVLTLSQGLLA  126 (277)
T ss_dssp             CEEEEESCCSCCSSCHHH-HHHHHCTTCEEEEEECCHHHHHTTHHHHC
T ss_pred             CEEEEeCCCCCcccHHHH-HHHHHCCCCEEEEEeCChHHHHHHHHHhc
Confidence            4799999996   44443 44433488999999999999999998764

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.62  E-value=3e-05  Score=69.80  Aligned_cols=41  Identities=27%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ..+|||+|||+|.++..+++.+ |+.+|+++|+ +.+++.|++
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~  229 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG  229 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC
T ss_pred             CceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc
Confidence            4689999999999999999986 8889999999 999887754

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.62  E-value=3.4e-05  Score=70.28  Aligned_cols=42  Identities=31%  Similarity=0.282  Sum_probs=37.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ...+|||+|||+|.+++.+++.+ |+.+++++|+ +.+++.|++
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~  244 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA  244 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh
Confidence            35689999999999999999986 8899999999 888887654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.61  E-value=4.2e-05  Score=63.78  Aligned_cols=37  Identities=27%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +.+|||+|||+|.++..++.     .  +|+|+|+.+++.|++|
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~-----~--~~vD~s~~~~~~a~~~   84 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKI-----K--IGVEPSERMAEIARKR   84 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTC-----C--EEEESCHHHHHHHHHT
T ss_pred             CCcEEEeCCCCCHHHHHHHH-----H--hccCCCHHHHHHHHhc
Confidence            46799999999999887753     2  9999999999999875

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.49  E-value=0.00011  Score=66.80  Aligned_cols=42  Identities=31%  Similarity=0.313  Sum_probs=37.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ...+|||+|||+|.+++.+++.+ |+.+++++|+ +.+++.|++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~  242 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ  242 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh
Confidence            35689999999999999999986 8899999999 888877654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.39  E-value=9.1e-05  Score=67.20  Aligned_cols=42  Identities=29%  Similarity=0.137  Sum_probs=37.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~  250 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP  250 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh
Confidence            35689999999999999999986 8899999999 999887654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.37  E-value=0.0002  Score=64.90  Aligned_cols=44  Identities=25%  Similarity=0.277  Sum_probs=39.8

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..+|+|+|||+|.+++.+++++ |+.+++..|. |..++.|+++++
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~  223 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFS  223 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSC
T ss_pred             CCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhh
Confidence            4589999999999999999997 9999999998 889999998864

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.28  E-value=0.00013  Score=65.75  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=35.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      ..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|+
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~  233 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLT  233 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCC
T ss_pred             CCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcc
Confidence            4689999999999999999986 8889999999 78887654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.28  E-value=0.00049  Score=61.58  Aligned_cols=53  Identities=30%  Similarity=0.346  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      |.+.+++.+ .   ..+++.++|.+||.|..+..+++.   +++|+|+|.+++|++.|++
T Consensus        10 Ll~e~le~L-~---~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           10 LYQEALDLL-A---VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             THHHHHHHH-T---CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhh-C---CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh
Confidence            455566655 1   224568999999999999999986   4799999999999999987

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.22  E-value=7.6e-05  Score=66.00  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=28.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.+|||||||+|.++..+++.    .+|+|||+|+
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~  113 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT  113 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch
Confidence            4568999999999999999874    5899999998

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.21  E-value=8.1e-05  Score=65.38  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=28.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.+|||||||+|.++..+++.    .+|+|||+++
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~  105 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT  105 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch
Confidence            4568999999999999998874    6899999998

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.17  E-value=0.00039  Score=62.42  Aligned_cols=38  Identities=21%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      +..+|||+|||+|.+++.+++.+ |+.+++++|++ ..+.
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~  221 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVA  221 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHT
T ss_pred             CCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhh
Confidence            45689999999999999999986 88999999994 4443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.09  E-value=0.00044  Score=64.95  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=31.8

Q ss_pred             CCCcEEEeccC------CcHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026108          195 RDGFWVDLGTG------SGAIAIGIARVLGSKGSIIAVDLNPLA  232 (243)
Q Consensus       195 ~~~rVLDLGtG------SG~iai~LA~~~~p~a~V~avDiS~~A  232 (243)
                      ++.+|||||||      +|..++.+++++.|+++|+|+|+|+.+
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m  259 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS  259 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence            35689999999      777788888765578999999999986

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.07  E-value=0.00086  Score=66.08  Aligned_cols=46  Identities=28%  Similarity=0.307  Sum_probs=33.1

Q ss_pred             CCcEEEeccCCcHH---HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAI---AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~i---ai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ...|+|+|||+|.+   ++.++++.+...+|+|||.|+.|. +|+++++.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~  406 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQF  406 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHH
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHh
Confidence            45799999999999   555555432223799999998655 67776654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.05  E-value=0.00031  Score=57.88  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      ++.+|||+|||+|.++..++      .+|+|+|+|+.
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~   97 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR------NPVHCFDLASL   97 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC------SCEEEEESSCS
T ss_pred             CCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC
Confidence            34679999999999987662      58999999875

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.93  E-value=0.0011  Score=60.81  Aligned_cols=55  Identities=33%  Similarity=0.450  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      |.+.+++.+ .   ..+++.++|..+|.|-.+..+++.++++++|+|+|++++|++.|+
T Consensus        45 Ll~Evl~~L-~---i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           45 LLDEAVNGL-N---IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             TTHHHHHHT-C---CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             cHHHHHHhh-C---CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            455566665 1   224678999999999999999988778899999999999999884

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.69  E-value=0.0046  Score=52.49  Aligned_cols=43  Identities=12%  Similarity=0.125  Sum_probs=37.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+||++||  |.-++.+|+.  ++++|+.||.+++..+.|++|.++
T Consensus        31 a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~   73 (202)
T 3cvo_A           31 AEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAA   73 (202)
T ss_dssp             CSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            357999998  4788888873  468999999999999999999875

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.65  E-value=0.0006  Score=60.98  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=26.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL  228 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDi  228 (243)
                      ++.+|||||||+|.++..+|+.    .+|+|||+
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~  111 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL----KNVREVKG  111 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS----TTEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc----CCEEEEec
Confidence            3568999999999999999874    48999999

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.61  E-value=0.0026  Score=61.07  Aligned_cols=65  Identities=20%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS------------KGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p------------~a~V~avDiS~~AL~~A  236 (243)
                      .+-||+..+++++.+.        +..+.+|+|-+||||.+.+.+.+++..            ...++|+|+++.+..+|
T Consensus       199 fyTP~~Vv~lmv~l~~--------p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la  270 (530)
T 3ufb_A          199 FYTPRPVVRFMVEVMD--------PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV  270 (530)
T ss_dssp             CCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred             ECCcHHHHHHHHHhhc--------cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence            3568876666665432        123558999999999999888764411            24699999999999999


Q ss_pred             HHHHH
Q 026108          237 AFNAQ  241 (243)
Q Consensus       237 r~Na~  241 (243)
                      +.|..
T Consensus       271 ~mNl~  275 (530)
T 3ufb_A          271 QMNLL  275 (530)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.56  E-value=0.0022  Score=58.95  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=42.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|+|.|-=+..+|... .+..|+|+|+|+.-++..++|+++
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r  194 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHS  194 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHH
Confidence            56789999999999999999864 667899999999999999999875

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.37  E-value=0.0057  Score=54.84  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..|++.++... .    .++..|||-.||||..++++.+.   +.+.+|+|+++.++++|++++++
T Consensus       239 ~~l~~~~i~~~-~----~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          239 AKLPEFFIRML-T----EPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             THHHHHHHHHH-C----CTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            34666666544 1    24567999999999999987763   47999999999999999988753

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.36  E-value=0.002  Score=57.47  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=26.7

Q ss_pred             CCCcEEEeccCC------cHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          195 RDGFWVDLGTGS------GAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       195 ~~~rVLDLGtGS------G~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      ++.+||||||||      |.  ..+++..+++++|+|+|+|+.
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC
Confidence            456899999955      76  445666544689999999975

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.14  E-value=0.012  Score=52.96  Aligned_cols=64  Identities=17%  Similarity=0.100  Sum_probs=48.2

Q ss_pred             cCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH---HHHHHHHHHHHh
Q 026108          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP---LAAAVAAFNAQR  242 (243)
Q Consensus       171 iPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~---~AL~~Ar~Na~~  242 (243)
                      .|-+-...|++.++... .    .++..|||-.||||..++++...   +.+.+|+|+++   ..+++|++++++
T Consensus       223 ~~~~kp~~l~~~~i~~~-~----~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          223 HPTQKPAAVIERLVRAL-S----HPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             CTTCCCHHHHHHHHHHH-S----CTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHh-C----CCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHH
Confidence            34444455677777655 2    24568999999999999988774   47999999999   999999988753

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.13  E-value=0.0049  Score=61.46  Aligned_cols=44  Identities=25%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             CCcEEEeccCCcHHHHH---HHHHhC---------CCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIG---IARVLG---------SKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~---LA~~~~---------p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ...|||+|||+|.+...   +++..+         ...+|+|||.|+.|+...++.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~  465 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYM  465 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHH
Confidence            35799999999999643   333221         124999999999888665544

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.60  E-value=0.024  Score=52.44  Aligned_cols=48  Identities=15%  Similarity=0.155  Sum_probs=41.1

Q ss_pred             CCCcEEEeccCCcHHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA-~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..++|+|++.|..++.++ +..++.++|+++|.++.+.+..++|++.
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            45689999999999999988 4442237999999999999999999875

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=95.00  E-value=0.022  Score=49.66  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=28.7

Q ss_pred             CCcEEEeccCCcHHHHHHHHHh------CCC-----cEEEEEeCCH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVL------GSK-----GSIIAVDLNP  230 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~------~p~-----a~V~avDiS~  230 (243)
                      ..+|||+|+|+|..++.+++.+      +|+     .+++++|..+
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  106 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence            4689999999999999887653      453     5899999876

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=94.87  E-value=0.051  Score=49.71  Aligned_cols=43  Identities=9%  Similarity=-0.067  Sum_probs=36.7

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +..|||+|.|.|.++..|+... ...+|+++|+++..+...++.
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~  101 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAK  101 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHh
Confidence            4679999999999999999864 336899999999998887764

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=94.32  E-value=0.059  Score=47.95  Aligned_cols=45  Identities=13%  Similarity=0.051  Sum_probs=36.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~-V~avDiS~~AL~~Ar~Na  240 (243)
                      ...+++||+||.|.+++.+... |-... |.++|+++.|++.-+.|.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~   60 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH   60 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC
Confidence            3458999999999999998774 33223 699999999999988884

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=93.81  E-value=0.16  Score=45.32  Aligned_cols=45  Identities=18%  Similarity=0.207  Sum_probs=39.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .+++||=||-|.|.++-.+++.. +..+|+.|||+++.+++|++-.
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~l  127 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYL  127 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcC
Confidence            35689999999999999999863 5679999999999999998753

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=93.81  E-value=0.0093  Score=53.22  Aligned_cols=42  Identities=17%  Similarity=0.104  Sum_probs=37.4

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..+||+.+|||.+++.+.+.   +.+++.||.++.+++.-++|++
T Consensus        93 ~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~  134 (283)
T 2oo3_A           93 NSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPH  134 (283)
T ss_dssp             SSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCC
T ss_pred             CCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhC
Confidence            45899999999999998773   3799999999999999999975

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=93.37  E-value=0.12  Score=45.77  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=28.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhC----CCcEEEEEeCC
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLN  229 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~----p~a~V~avDiS  229 (243)
                      +++||++||..|.-++.+|..+.    ++.+|+++|..
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dtf  144 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSF  144 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECS
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECC
Confidence            56899999999999999987652    36799999964

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=93.30  E-value=0.045  Score=48.73  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      ++.+|||||||.|-.+..++.+. +-..|+|+|++.+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d  125 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQ  125 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccC
Confidence            45689999999999999988764 4468999999743

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=93.01  E-value=0.054  Score=48.15  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=28.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.+|||||||.|-.+..++.+. +...|+|+|++-
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGv  108 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGR  108 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEec
Confidence            35689999999999999888763 345788888873

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=92.21  E-value=0.1  Score=48.27  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.++|||||+.|-.+..++++   +++|+|||+.+
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~  243 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP  243 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh
Confidence            4678999999999999999885   47999999764

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=90.82  E-value=0.33  Score=44.85  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++++||=||-|.|..+-.+.+.  +..+|+.|||+++.+++|++.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh--~~~~V~~VEIDp~VVe~ar~y  247 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL--KPKMVTMVEIDQMVIDGCKKY  247 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT--CCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhc--CCceeEEEccCHHHHHHHHhh
Confidence            3578999999999999999885  447999999999999999975

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=90.38  E-value=0.19  Score=45.31  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=28.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.+||||||+.|-.+..++...+ ...|+|+|+-.
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~  128 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGG  128 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCS
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCC
Confidence            456899999999999998888753 34799999864

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=90.05  E-value=0.3  Score=46.38  Aligned_cols=42  Identities=24%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..+++||+||.|-+.+.+...   +. -|.++|+++.|++.-+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~a---G~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI---GGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT---TEEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHhc
Confidence            357999999999999988653   34 4899999999999998885

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=89.87  E-value=0.18  Score=44.28  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=28.9

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.+|+||||+.|-.+..++...+ ..+|+|+|+-.
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~  112 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGG  112 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCS
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCC
Confidence            456899999999999998888753 35899999853

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=89.66  E-value=0.41  Score=43.32  Aligned_cols=43  Identities=26%  Similarity=0.222  Sum_probs=36.1

Q ss_pred             CCCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~  238 (243)
                      .++.+||-+|+|. |.+++.+|+..  ++ +|+++|.|++.++.+++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLL--GAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence            3567899999987 88888999986  45 99999999999888864

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=89.24  E-value=1.2  Score=41.19  Aligned_cols=64  Identities=20%  Similarity=0.245  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHH
Q 026108          176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG------SKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       176 TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~------p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .|+|..++..+. ...+...+-.|+++|.|+|.++.-+.+.+.      ...+++.||+|+...+.-++++
T Consensus        62 Ge~la~~~~~~w-~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           62 GELLGLWSASVW-KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             HHHHHHHHHHHH-HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-HHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            345555555543 222222344699999999999877765431      2358999999998777555543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=89.23  E-value=0.22  Score=44.72  Aligned_cols=35  Identities=26%  Similarity=0.191  Sum_probs=29.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.+||||||+.|-.+..+++.. +-..|+|+|+..
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~  115 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGI  115 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecc
Confidence            46789999999999999999754 345899999864

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=88.23  E-value=0.73  Score=41.12  Aligned_cols=44  Identities=30%  Similarity=0.285  Sum_probs=36.2

Q ss_pred             CCCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~N  239 (243)
                      .++.+||-+|+|. |.+++.+|+..  ++ +|+++|.+++-++.|++.
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~--Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc
Confidence            3567899999886 88888888876  35 799999999999988753

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=88.08  E-value=0.67  Score=42.78  Aligned_cols=34  Identities=26%  Similarity=0.068  Sum_probs=27.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHH-------------h---CCCcEEEEEeCC
Q 026108          196 DGFWVDLGTGSGAIAIGIARV-------------L---GSKGSIIAVDLN  229 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~-------------~---~p~a~V~avDiS  229 (243)
                      ..+|+|||||+|..++.+...             .   .|..+|+..|.-
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp  102 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF  102 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence            467999999999999988876             1   156789999976

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=87.83  E-value=0.94  Score=39.82  Aligned_cols=43  Identities=26%  Similarity=0.303  Sum_probs=36.6

Q ss_pred             CCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      .++.+||-.|+|. |.+++.+|+..  +++|+++|.+++-++.+++
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH
Confidence            3567899999986 89999999975  5799999999999998875

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=86.90  E-value=0.63  Score=42.72  Aligned_cols=35  Identities=29%  Similarity=0.210  Sum_probs=25.8

Q ss_pred             CCcEEEeccCCcHHHHHHHH--------Hh------CCCcEEEEEeCCH
Q 026108          196 DGFWVDLGTGSGAIAIGIAR--------VL------GSKGSIIAVDLNP  230 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~--------~~------~p~a~V~avDiS~  230 (243)
                      ..+|+|||||+|..++.+..        ++      .|..+|+..|.-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~  101 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPS  101 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCc
Confidence            46899999999999998733        21      1567888888643

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=86.86  E-value=0.98  Score=40.08  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             CCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+||-+|+|. |.+++.+|+.+  ++ +|+++|.+++-++.+++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            567899999875 77888888875  46 99999999998888875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=86.04  E-value=1.1  Score=40.27  Aligned_cols=43  Identities=33%  Similarity=0.286  Sum_probs=35.3

Q ss_pred             CCCCcEEEeccCC-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a-~V~avDiS~~AL~~Ar~  238 (243)
                      .++.+||-+|+|. |.+++.+|+..  ++ +|+++|.+++-++.|++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~--Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLL--GAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC--CCCeEEEEcCCHHHHHHHHH
Confidence            3567899999876 78888889875  45 89999999999998875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=85.06  E-value=1.4  Score=38.86  Aligned_cols=44  Identities=16%  Similarity=0.143  Sum_probs=35.0

Q ss_pred             CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+||-+|+|. |.+++.+|+...|+++|+++|.|++-++.+++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            567899999864 67777888875225799999999999888875

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=83.81  E-value=1.7  Score=38.40  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+||-+|+|. |.+++.+|+..  +++|+++|.+++.++.+++
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence            467899999875 77778888875  5789999999999988875

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=83.55  E-value=1.4  Score=45.57  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..+++||+||.|-+++.+... |-.-.|.|+|+++.|++.-+.|.
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~  583 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNN  583 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHC
T ss_pred             CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC
Confidence            457999999999999998775 21125789999999999988884

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=83.00  E-value=2  Score=37.68  Aligned_cols=43  Identities=35%  Similarity=0.420  Sum_probs=35.6

Q ss_pred             CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+||=+|+|. |.+++.+|+.. .+++|+++|.+++-++.+++
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH
Confidence            467899999875 77888888876 35799999999999998875

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=82.65  E-value=1.8  Score=42.87  Aligned_cols=45  Identities=29%  Similarity=0.421  Sum_probs=35.3

Q ss_pred             CCcEEEeccCCcHHHHHHHHHh---CCC-cEEEEEeCCHHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVL---GSK-GSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~---~p~-a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ..+|+||.||.|-+++.+-...   +.+ --|.|+|+++.|++.=+.|.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            4579999999999988886641   000 25789999999999998884

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=82.22  E-value=1.3  Score=39.65  Aligned_cols=42  Identities=17%  Similarity=0.207  Sum_probs=34.6

Q ss_pred             CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+||-+|+|. |.+++.+|+..  +++|+++|.+++-++.+++
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            567899999875 77788888875  5789999999988888865

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=81.23  E-value=2.3  Score=37.77  Aligned_cols=43  Identities=19%  Similarity=0.106  Sum_probs=35.1

Q ss_pred             CCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      .++.+||=+|+|. |..++.+|+..  +++|+++|.+++-++.+++
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH
Confidence            3567899999775 77788888875  5799999999999888865

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=80.78  E-value=1.3  Score=39.16  Aligned_cols=43  Identities=16%  Similarity=0.081  Sum_probs=35.2

Q ss_pred             CCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      .++.+||=+|+|. |.+++.+|+..  +++|+++|.+++-++.+++
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh
Confidence            3567899999875 77788888875  5799999999988888875

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=80.05  E-value=0.18  Score=44.47  Aligned_cols=22  Identities=36%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARV  216 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~  216 (243)
                      ++.+|+||||+-|-.+..++..
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~   94 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATM   94 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTS
T ss_pred             CCCEEEEcCCCCCHHHHHHhhh
Confidence            4678999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	7e-08
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	5e-06
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	8e-06
d2ih2a1	223	c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina	2e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	3e-04
d2f8la1	328	c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {	4e-04

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 7e-08
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGI 213
           E +  L + +     IP     L      + L+   D+D       +D+GTG+  I   +
Sbjct: 21  EDF-GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 79

Query: 214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
              L +    +A +++ +    A  N ++
Sbjct: 80  GATL-NGWYFLATEVDDMCFNYAKKNVEQ 107

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 21/116 (18%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 130 IGLDELYGL-WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRP-ETELMVDLVSDVL 187
           +   ++ G    Q +      QY++      D V+ ++ G  I  P +  +++ ++    
Sbjct: 39  VPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMM---- 94

Query: 188 VRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
                 +  G  V + G+GSG +++ +++ +GS+G +I+ ++      +A  N + 
Sbjct: 95  -----DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.5 bits (102), Expect = 8e-06
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 193 GLRDG-FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236
           GLR G   +++G GSG ++  I   L  KG++  V+ +      A
Sbjct: 82  GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKA 126

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 8/66 (12%)

Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228
           V  P    + MV L          G R    ++     G          G+    + V++
Sbjct: 1   VETPPEVVDFMVSLA-----EAPRGGR---VLEPACAHGPFLRAFREAHGTAYRFVGVEI 52

Query: 229 NPLAAA 234
           +P A  
Sbjct: 53  DPKALD 58

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 129 RIGLDELYGL-WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVL 187
            I  D + GL     ++      +LV      D V+S+  G  +  P+    +    D+ 
Sbjct: 36  SIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDI- 94

Query: 188 VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242
                G R    ++ G GSGA+ + + R +G  G +I+ +     A  A  N   
Sbjct: 95  ---FPGAR---VLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG 143

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 13/98 (13%)

Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEG-VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDL 202
           E RK  Q  +     + +   ++      P     ++  L+   +++    +     +D 
Sbjct: 73  EIRKGLQLALL----KGMKHGIQVNHQMTPDSIGFIVAYLLEK-VIQKKKNVS---ILDP 124

Query: 203 GTGSGAIAIGI----ARVLGSKGSIIAVDLNPLAAAVA 236
             G+  +   +                VD++ L  ++A
Sbjct: 125 ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLA 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	100.0
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.97
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.73
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.32
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.27
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.26
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.12
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.04
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.04
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.03
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.01
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.98
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.97
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.96
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.95
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.94
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.89
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.83
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.83
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.83
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.82
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.82
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.82
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.82
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.82
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.8
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.8
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.8
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.79
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.79
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.78
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.77
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.77
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.75
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.74
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.73
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.72
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.7
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.67
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.65
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.63
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.62
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.61
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.59
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.58
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.55
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.53
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.5
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.49
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.48
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.48
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.48
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.47
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.46
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.44
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.43
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.42
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.4
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.39
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.39
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.37
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.34
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.31
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.28
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.27
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.24
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.24
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.16
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.1
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.08
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.03
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.94
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.92
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.83
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.75
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.46
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.3
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.21
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.17
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.99
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.94
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.92
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.85
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.76
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.7
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.58
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.55
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.42
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.25
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.22
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.18
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.07
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	95.94
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.87
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.82
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	95.34
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.07
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	94.6
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	94.57
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	94.53
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	94.35
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	94.29
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	94.17
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.6
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.58
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.26
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.79
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.72
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	89.03
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	88.53
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.25
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.12
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.07
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.51
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.28
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	83.96
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	82.88

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-34  Score=257.76  Aligned_cols=154  Identities=28%  Similarity=0.307  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhcC
Q 026108           66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK  145 (243)
Q Consensus        66 l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~~  145 (243)
                      .++|+++|.+++.+++.             ++.||+||++|++++++..+.+  +   .+..++.+..+.+..+..||.+
T Consensus         2 ~~~~l~~~~~~l~~~~~-------------p~~da~~ll~~~l~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~rr~~   63 (274)
T d2b3ta1           2 YQHWLREAISQLQASES-------------PRRDAEILLEHVTGRGRTFILA--F---GETQLTDEQCQQLDALLTRRRD   63 (274)
T ss_dssp             HHHHHHHHHHTTTTSSC-------------HHHHHHHHHHHHHTCCHHHHHH--T---TTCBCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhCcCHHHHhh--C---CCCCCCHHHHHHHHHHHHHHhc
Confidence            57899999999975433             4779999999999999876532  1   2234666666777788888899


Q ss_pred             CCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEE
Q 026108          146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA  225 (243)
Q Consensus       146 ~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~a  225 (243)
                      |+|+|||+|+.+|+|++|.|+++||||||+||.|++.++... .    .++.+|||||||||||++++|+.+ |+++|+|
T Consensus        64 g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~-~----~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~a  137 (274)
T d2b3ta1          64 GEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL-P----EQPCRILDLGTGTGAIALALASER-PDCEIIA  137 (274)
T ss_dssp             TCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHS-C----SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEE
T ss_pred             CcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhh-c----ccccceeeeehhhhHHHHHHHhhC-Ccceeee
Confidence            999999999999999999999999999999999999988765 2    135689999999999999999996 8999999


Q ss_pred             EeCCHHHHHHHHHHHHhC
Q 026108          226 VDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       226 vDiS~~AL~~Ar~Na~~~  243 (243)
                      +|+|+.|+++|++|+++|
T Consensus       138 vDis~~Al~~A~~Na~~~  155 (274)
T d2b3ta1         138 VDRMPDAVSLAQRNAQHL  155 (274)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             ccchhHHHhHHHHHHHHh
Confidence            999999999999999864

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=5.2e-31  Score=233.74  Aligned_cols=155  Identities=26%  Similarity=0.332  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCCcccHHHHHHHHHhccCCCCCCcccccCCCccccccchhHHHHHHHHHhhhc
Q 026108           65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE  144 (243)
Q Consensus        65 ~l~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~Ea~~Ll~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~R~~  144 (243)
                      +|.++++.+...++.. ..        +   +..|+++|++|++++++..+.+  +    +..+..+..+.+..|.+||.
T Consensus         2 ~i~~l~~~~~~~l~~~-~e--------~---~~lda~lll~~~l~~~~~~l~~--~----~~~l~~~~~~~~~~~i~rR~   63 (271)
T d1nv8a_           2 KIWSLIRDCSGKLEGV-TE--------T---SVLEVLLIVSRVLGIRKEDLFL--K----DLGVSPTEEKRILELVEKRA   63 (271)
T ss_dssp             CHHHHHHHHHHHTTTT-CS--------C---HHHHHHHHHHHHHTCCGGGGCC--S----SCCCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcC-CC--------C---HHHHHHHHHHHHHCcCHHHHhh--C----CCCCCHHHHHHHHHHHHHhh
Confidence            5789999999888521 11        1   5679999999999999876542  1    22466666677778888889


Q ss_pred             CCCceeEEeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEE
Q 026108          145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII  224 (243)
Q Consensus       145 ~~~Pl~yi~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~  224 (243)
                      +|+|+|||+|+++|||++|.|+++||||||+||+|++.+++... ..   ...+++|+||||||+++++|+ . ++++|+
T Consensus        64 ~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~-~~---~~~~vld~g~GsG~i~~~la~-~-~~~~v~  137 (271)
T d1nv8a_          64 SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIR-KY---GIKTVADIGTGSGAIGVSVAK-F-SDAIVF  137 (271)
T ss_dssp             TTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHH-HH---TCCEEEEESCTTSHHHHHHHH-H-SSCEEE
T ss_pred             CCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhc-cc---cccEEEEeeeeeehhhhhhhh-c-ccceee
Confidence            99999999999999999999999999999999999999998773 22   235799999999999999986 4 789999


Q ss_pred             EEeCCHHHHHHHHHHHHhC
Q 026108          225 AVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       225 avDiS~~AL~~Ar~Na~~~  243 (243)
                      |+|+|++|+++|++|+++|
T Consensus       138 a~Dis~~Al~~A~~Na~~~  156 (271)
T d1nv8a_         138 ATDVSSKAVEIARKNAERH  156 (271)
T ss_dssp             EEESCHHHHHHHHHHHHHT
T ss_pred             echhhhhHHHHHHHHHHHc
Confidence            9999999999999999875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.7e-18  Score=149.16  Aligned_cols=86  Identities=17%  Similarity=0.125  Sum_probs=69.6

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcC--CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN--DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~--~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      +|||++|.|++++|||||+++..+...+..+....  ...+..++||||||||||++.||+++ ++++|+|+|+|++|++
T Consensus        21 ~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~   99 (250)
T d2h00a1          21 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFN   99 (250)
T ss_dssp             HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHH
T ss_pred             HHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHH
Confidence            47899999999999999888776544433321111  11234589999999999999999997 8999999999999999


Q ss_pred             HHHHHHHhC
Q 026108          235 VAAFNAQRI  243 (243)
Q Consensus       235 ~Ar~Na~~~  243 (243)
                      +|++|+++|
T Consensus       100 ~A~~N~~~n  108 (250)
T d2h00a1         100 YAKKNVEQN  108 (250)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=3.1e-12  Score=110.84  Aligned_cols=99  Identities=28%  Similarity=0.533  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHhhhcCCCcee----EEeeecccc-----ccccccCCCcccC---CccHHHHHHHHHHHhhhcCCCCCCCc
Q 026108          131 GLDELYGLWKQRIEKRKPFQ----YLVGCEHWR-----DLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGF  198 (243)
Q Consensus       131 ~~~~~~~~~~~R~~~~~Pl~----yi~g~~~f~-----~l~f~v~~~vliP---Rp~TElLv~~v~~~l~~~~~~~~~~r  198 (243)
                      +.++|.+.|++.+   +|+.    ++.  ..|.     ...+.++|++-+-   +|.|.++++.+.+..      .++.+
T Consensus        55 ~~~dW~~~w~~~~---~p~~~~~~~v~--~~~~~~~~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~------~~g~~  123 (254)
T d2nxca1          55 GDEDWLEAWRRDL---KPALAPPFVVL--APWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL------RPGDK  123 (254)
T ss_dssp             CHHHHHHHHHHHC---CCEEETTEEEE--CTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHC------CTTCE
T ss_pred             CcchHHHHHHhhC---CCEEECCEEEE--eccccCCCcceEEEEccccccCccccchhhHHHHHHHhhc------CccCE
Confidence            4578999999876   5652    122  1232     3456677777663   589999999887654      14678


Q ss_pred             EEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       199 VLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      |||+|||||.+++.+++.   +++|+|+|+|+.|++.|++|+++|
T Consensus       124 VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n  165 (254)
T d2nxca1         124 VLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRN  165 (254)
T ss_dssp             EEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHT
T ss_pred             EEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHc
Confidence            999999999999998874   379999999999999999999865

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.27  E-value=5e-12  Score=103.44  Aligned_cols=69  Identities=25%  Similarity=0.361  Sum_probs=57.6

Q ss_pred             CcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       168 ~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +.-+|.|..+.+...++.++    ...++.+|||+|||+|.+++.+|+.   ..+|+|+|+|+++++.|++|++++
T Consensus        10 ~~~~~~~t~~eir~~il~~l----~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~   78 (186)
T d1l3ia_          10 NPSVPGPTAMEVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRH   78 (186)
T ss_dssp             CTTSCCCCCHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCChHHHHHHHHHhc----CCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHc
Confidence            34457788888888888776    2335779999999999999999875   369999999999999999999764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=4.4e-12  Score=103.31  Aligned_cols=82  Identities=26%  Similarity=0.308  Sum_probs=66.4

Q ss_pred             EeeeccccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHH
Q 026108          152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL  231 (243)
Q Consensus       152 i~g~~~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~  231 (243)
                      |+| -.|.|..+.+...+   ||.++.+.+.+.+|+...  ..++.+|||+|||+|.+++.++.+   +++|+++|+|+.
T Consensus         4 i~~-g~~kg~~l~~~~~~---Rpt~~~v~e~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~   74 (171)
T d1ws6a1           4 ILG-GKARGVALKVPASA---RPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPE   74 (171)
T ss_dssp             CCS-GGGTTCEECCCTTC---CCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHH
T ss_pred             Eec-ccccCCEeCCCCCC---CCCcHHHHHHHHHHhhcc--ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHH
Confidence            444 35778888775543   899999999998888322  224678999999999999998875   378999999999


Q ss_pred             HHHHHHHHHHh
Q 026108          232 AAAVAAFNAQR  242 (243)
Q Consensus       232 AL~~Ar~Na~~  242 (243)
                      |++.+++|++.
T Consensus        75 a~~~~~~N~~~   85 (171)
T d1ws6a1          75 AVRLLKENVRR   85 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHhhhhHHHHh
Confidence            99999999975

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.12  E-value=4.1e-11  Score=98.37  Aligned_cols=72  Identities=31%  Similarity=0.351  Sum_probs=57.0

Q ss_pred             cccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       161 l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      ..|...++||.+.   +.|++|++.+.        ..++.+|||+|||+|.+++.+|+..   .+|+++|+|+.|++.|+
T Consensus        23 ~~~~t~~gvF~~~~~d~~t~lLi~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~   91 (194)
T d1dusa_          23 LKFKTDSGVFSYGKVDKGTKILVENVV--------VDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAK   91 (194)
T ss_dssp             EEEEEETTSTTTTSCCHHHHHHHHHCC--------CCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHH
T ss_pred             EEEEcCCCccCCCCcCHHHHHHHHhCC--------cCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHH
Confidence            3566788898875   45667665421        2246789999999999999999863   58999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +|++.+
T Consensus        92 ~n~~~~   97 (194)
T d1dusa_          92 ENIKLN   97 (194)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=2.1e-10  Score=95.41  Aligned_cols=50  Identities=24%  Similarity=0.414  Sum_probs=42.9

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +..++.+|||+|||+|++++.++.. |+ .+|+|+|+|+.+++.|++|++.+
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~-g~-~~v~~vdi~~~~~~~a~~N~~~~   92 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLL-GA-KEVICVEVDKEAVDVLIENLGEF   92 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHTGGG
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHc-CC-CEEEEEcCcHHHHHHHHHHHHHc
Confidence            3446789999999999999998875 33 59999999999999999998753

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.1e-10  Score=95.72  Aligned_cols=81  Identities=19%  Similarity=0.241  Sum_probs=61.6

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|.|..+.+.++. .-||.++.+.+.+..++...   ..+.+|||||||||++|+.++.+ |. .+|++||++++|++.+
T Consensus         9 ~~kg~~l~~~~~~-~~RPt~~~vre~lfn~l~~~---~~~~~vLDlfaGsG~~giealsr-Ga-~~v~~VE~~~~a~~~~   82 (183)
T d2fpoa1           9 QWRGRKLPVPDSP-GLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSR-YA-AGATLIEMDRAVSQQL   82 (183)
T ss_dssp             GGTTCEEECCCC-------CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHH
T ss_pred             ccCCCEecCCCCC-CcCcCcHHHHHHHHhhhhcc---cchhhhhhhhccccceeeeEEec-Cc-ceeEEEEEeechhhHH
Confidence            4667777766654 34999999999998887321   24578999999999999998886 44 5999999999999999


Q ss_pred             HHHHHhC
Q 026108          237 AFNAQRI  243 (243)
Q Consensus       237 r~Na~~~  243 (243)
                      ++|++.+
T Consensus        83 k~N~~~~   89 (183)
T d2fpoa1          83 IKNLATL   89 (183)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhhc
Confidence            9999753

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=3.7e-10  Score=100.44  Aligned_cols=89  Identities=21%  Similarity=0.213  Sum_probs=71.9

Q ss_pred             ceeEEeeeccc---cccccccCCCcccCC--ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcE
Q 026108          148 PFQYLVGCEHW---RDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS  222 (243)
Q Consensus       148 Pl~yi~g~~~f---~~l~f~v~~~vliPR--p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~  222 (243)
                      .+..+.|...+   .|+.|.++++.|++-  ..++.+++.+.+++ .   ..++.+||||+||+|.+++.||+..   .+
T Consensus       164 ~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~-~---~~~~~~vlDLycG~G~fsl~La~~~---~~  236 (358)
T d1uwva2         164 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL-D---VQPEDRVLDLFCGMGNFTLPLATQA---AS  236 (358)
T ss_dssp             CCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHH-T---CCTTCEEEEESCTTTTTHHHHHTTS---SE
T ss_pred             eEEeecCCceEEecCCEEEEECCchhhccchhhhhHHHHHHHHhh-c---cCCCceEEEecccccccchhccccc---cE
Confidence            34445554322   467899999999984  67888999999988 2   2245689999999999999999863   79


Q ss_pred             EEEEeCCHHHHHHHHHHHHhC
Q 026108          223 IIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       223 V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      |+|+|+++.|++.|++|++.|
T Consensus       237 V~gvE~~~~ai~~A~~na~~n  257 (358)
T d1uwva2         237 VVGVEGVPALVEKGQQNARLN  257 (358)
T ss_dssp             EEEEESCHHHHHHHHHHHHHT
T ss_pred             EEeccCcHHHHHHHHHhHHhc
Confidence            999999999999999999865

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.01  E-value=5.3e-10  Score=91.70  Aligned_cols=80  Identities=24%  Similarity=0.282  Sum_probs=64.8

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|.|..+...++. .-||.+..+-+.+..++ .  ...++.+|||||||||++|+.++.+ |. .+|++||.+++|++.+
T Consensus         7 ~~kg~~l~~~~~~-~~RPt~~~vrealFn~l-~--~~~~~~~vLDlfaGsG~~g~ea~sr-Ga-~~v~~ve~~~~a~~~~   80 (182)
T d2fhpa1           7 EYGGRRLKALDGD-NTRPTTDKVKESIFNMI-G--PYFDGGMALDLYSGSGGLAIEAVSR-GM-DKSICIEKNFAALKVI   80 (182)
T ss_dssp             TTTTCBCCCCCCC-SSCCCCHHHHHHHHHHH-C--SCCSSCEEEETTCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHH
T ss_pred             ccCCCEecCCCCC-CcCcCcHHHHHHHHHHH-H--HhcCCCEEEEcccccccccceeeec-ch-hHHHHHHHHHHHHHHH
Confidence            3567766654443 33999999999999988 2  2335789999999999999999986 44 5899999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|++.
T Consensus        81 ~~N~~~   86 (182)
T d2fhpa1          81 KENIAI   86 (182)
T ss_dssp             HHHHHH
T ss_pred             HHHhhh
Confidence            999874

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.98  E-value=7.3e-10  Score=92.08  Aligned_cols=48  Identities=21%  Similarity=0.221  Sum_probs=42.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~-~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||||||+|.+++.+++.+ .++++|+|+|+|+++++.|+++++.
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~   87 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA   87 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh
Confidence            45689999999999999999853 2678999999999999999998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.97  E-value=4e-10  Score=89.69  Aligned_cols=45  Identities=7%  Similarity=-0.102  Sum_probs=40.9

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .++.+|||+|||+|..++.||++   +.+|+|+|+|+.+++.|+++++
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~   63 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERG   63 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhc
Confidence            35779999999999999999986   4899999999999999999874

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=8.9e-10  Score=92.69  Aligned_cols=63  Identities=29%  Similarity=0.229  Sum_probs=50.9

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |.++..++.+.+.+    ...++.+|||+|||+|.++..++++.  +++|+|||+|+.+++.|++|++.
T Consensus        16 p~~~~~~~~l~~~~----~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~   78 (245)
T d1nkva_          16 PFTEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEE   78 (245)
T ss_dssp             SCCHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHc----CCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHH
Confidence            45555666666655    22356799999999999999999874  47999999999999999999765

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.95  E-value=4.8e-10  Score=93.54  Aligned_cols=49  Identities=31%  Similarity=0.419  Sum_probs=42.2

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +...+++|||+|||||.+++.++.. |+ .+|+|||+|++|++.|++|++.
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~-ga-~~V~~vDid~~a~~~ar~N~~~   93 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLL-GA-ESVTAFDIDPDAIETAKRNCGG   93 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT-TB-SEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHc-CC-CcccccccCHHHHHHHHHcccc
Confidence            3446789999999999999998885 34 5899999999999999999763

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.94  E-value=1.2e-09  Score=86.61  Aligned_cols=57  Identities=25%  Similarity=0.260  Sum_probs=46.6

Q ss_pred             HHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          182 LVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       182 ~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      .+..++ .  ...++.+|||+|||||.+++.++.+ |+ .+|++||+++.|++.+++|++.+
T Consensus         4 ~~fn~l-~--~~~~g~~vlDl~~GtG~~~iea~~r-ga-~~v~~ve~~~~a~~~~~~n~~~~   60 (152)
T d2esra1           4 AIFNMI-G--PYFNGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMT   60 (152)
T ss_dssp             HHHHHH-C--SCCCSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTT
T ss_pred             HHHHHH-H--hhCCCCeEEEcCCccCHHHHHHHHh-Cc-ceeeeehhchhhhhhhhhhhhhc
Confidence            344555 1  2346789999999999999998886 45 59999999999999999999864

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=2.5e-09  Score=89.16  Aligned_cols=45  Identities=22%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..+|||+|||+|.+++.+++.   +.+|+|||+|+.+++.|++|+..
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~   85 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKE   85 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCccchhhccc---ceEEEEEeecccccccccccccc
Confidence            4568999999999999999985   36999999999999999999764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.83  E-value=3e-09  Score=91.62  Aligned_cols=50  Identities=22%  Similarity=0.179  Sum_probs=46.0

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..++.+|||+|||||.+++.+|+..+++++|+++|+++++++.|++|+++
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~  132 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE  132 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            44678999999999999999999877889999999999999999999875

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.83  E-value=3.2e-09  Score=88.49  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=40.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||||||+|.++..+++..   .+|+|||+|+.+++.|+++++.
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~   60 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQE   60 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcc
Confidence            56789999999999999999863   6999999999999999999763

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.83  E-value=3.2e-09  Score=87.40  Aligned_cols=45  Identities=24%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||||||+|.+++.+++.   +.+|+|+|+|+++++.|+++++.
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~   59 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEG   59 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccc
Confidence            4578999999999999999986   26999999999999999999764

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=1.6e-09  Score=88.65  Aligned_cols=80  Identities=19%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~A  236 (243)
                      .|.|..+.+..+.. -||.+..+-+.+.+++..   ...+.+||||+||||++|+.++.+ |+ .+|+.||.+..++++.
T Consensus         9 ~~kg~~l~~~~~~~-~RPt~~~vrealFn~l~~---~~~~~~vLDlFaGsG~~glEalSR-GA-~~v~fVE~~~~a~~~i   82 (183)
T d2ifta1           9 LWRGRKLPVLNSEG-LRPTGDRVKETLFNWLMP---YIHQSECLDGFAGSGSLGFEALSR-QA-KKVTFLELDKTVANQL   82 (183)
T ss_dssp             TTTTCEEECC----------CHHHHHHHHHHHH---HHTTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHH
T ss_pred             ccCCCEecCCCCCC-cCcCcHHHHHHHHHHhhh---hcccceEeecccCccceeeeeeee-cc-eeeEEeecccchhhhH
Confidence            35677776665543 599999999999998832   124578999999999999999997 55 5999999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      ++|++.
T Consensus        83 k~Ni~~   88 (183)
T d2ifta1          83 KKNLQT   88 (183)
T ss_dssp             HHHHHH
T ss_pred             hhHHhh
Confidence            999975

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=2.7e-09  Score=87.00  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=39.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||||||+|.+++.+|+.   +.+|+|+|+|+++++.|++++.
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~   80 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAK   80 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhc
Confidence            4568999999999999999984   4799999999999999999875

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=4.9e-09  Score=90.82  Aligned_cols=51  Identities=29%  Similarity=0.361  Sum_probs=46.4

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ..++.+|||+|||||.+++.+|+..+++++|+++|+++++++.|++|++++
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~  151 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW  151 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh
Confidence            346789999999999999999998878899999999999999999999763

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.1e-09  Score=88.73  Aligned_cols=57  Identities=14%  Similarity=0.039  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       178 lLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      .|++.+...+ .   ..++.+|||+|||+|..++.||+.   +.+|+|||+|+.||+.|+++..
T Consensus        32 ~l~~~~~~~l-~---~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~   88 (229)
T d2bzga1          32 LLKKHLDTFL-K---GKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQN   88 (229)
T ss_dssp             HHHHHHHHHH-T---TCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHHhc-C---CCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhh
Confidence            4556555554 1   224679999999999999999985   4799999999999999988754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=7e-09  Score=86.61  Aligned_cols=60  Identities=23%  Similarity=0.367  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..+++.+    ...++.+|||+|||+|.++..+|+.++++..|+++|+++++++.|++|++.
T Consensus        63 ~~a~~l~~l----~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~  122 (213)
T d1dl5a1          63 LMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER  122 (213)
T ss_dssp             HHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             hhHHHHHhh----hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhh
Confidence            344455554    233567999999999999999999887788999999999999999999875

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.80  E-value=4.5e-09  Score=88.03  Aligned_cols=61  Identities=20%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..++.+.+.+ ... ..++++|||+|||+|.+++.+++.   +.+|+|||+|+.+|+.|++++..
T Consensus        21 ~~~~~~~~~~~-~~~-~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~   81 (246)
T d1y8ca_          21 KKWSDFIIEKC-VEN-NLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRS   81 (246)
T ss_dssp             HHHHHHHHHHH-HTT-TCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHh-CCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccc
Confidence            33445555544 222 224568999999999999999986   36999999999999999998753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=6e-09  Score=90.40  Aligned_cols=50  Identities=24%  Similarity=0.361  Sum_probs=46.3

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..++.+|||+|||||.+++.||+..+|+++|+++|+++++++.|++|+++
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~  143 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG  143 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhh
Confidence            34678999999999999999999988999999999999999999999874

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=3.3e-09  Score=91.55  Aligned_cols=44  Identities=18%  Similarity=0.069  Sum_probs=39.5

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+|||+|||+|.+++.||+.   +.+|+|+|+|+.+|+.|++|+..
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~  100 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWN  100 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHh
Confidence            468999999999999999985   47999999999999999998753

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.79  E-value=5.5e-09  Score=88.56  Aligned_cols=50  Identities=20%  Similarity=0.226  Sum_probs=44.4

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..++.+|||||||+|..+..+|... +++.|+|||+|+.+++.|++++++
T Consensus        71 ~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~  120 (230)
T d1g8sa_          71 PIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE  120 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhh
Confidence            34457899999999999999999974 889999999999999999998764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.79  E-value=4.9e-09  Score=87.53  Aligned_cols=49  Identities=20%  Similarity=0.159  Sum_probs=44.1

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..++.+|||||||+|..+..+|... ++.+|+|||+|+.+++.|++++++
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~  102 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE  102 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhc
Confidence            3457899999999999999999987 678999999999999999998865

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.78  E-value=9e-09  Score=88.22  Aligned_cols=47  Identities=23%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..++.+|||+|||+|.+++.||+++  +++|+|||+|+.+++.|+++++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~  111 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNN  111 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccc
Confidence            3356899999999999999999875  5799999999999999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=6.7e-09  Score=87.57  Aligned_cols=80  Identities=21%  Similarity=0.285  Sum_probs=59.3

Q ss_pred             ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      |.+..+.+..+..+..|-.   +-.+++.+ . ....++.+|||+|||+|..+..+|+..++.++|+++|+++++++.|+
T Consensus        44 Y~D~~l~i~~~~~is~P~~---~a~~le~L-~-~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          44 YMDSPQSIGFQATISAPHM---HAYALELL-F-DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             TSSSCEEEETTEEECCHHH---HHHHHHHT-T-TTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCccccchhhhhhhHH---HHHHHHHH-h-hccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            4455666666666655543   33444443 1 11235678999999999999999998777889999999999999999


Q ss_pred             HHHHh
Q 026108          238 FNAQR  242 (243)
Q Consensus       238 ~Na~~  242 (243)
                      +|+++
T Consensus       119 ~~l~~  123 (224)
T d1i1na_         119 NNVRK  123 (224)
T ss_dssp             HHHHH
T ss_pred             Hhccc
Confidence            99864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7e-09  Score=92.38  Aligned_cols=49  Identities=20%  Similarity=0.382  Sum_probs=45.8

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .++.+|||+|||||++++.||+..+++++|+++|+++++++.|++|+++
T Consensus        97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~  145 (324)
T d2b25a1          97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH  145 (324)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHH
Confidence            3678999999999999999999988899999999999999999999875

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.75  E-value=9e-09  Score=88.79  Aligned_cols=74  Identities=22%  Similarity=0.293  Sum_probs=56.7

Q ss_pred             ccccccC--CCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          160 DLVLSVE--EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       160 ~l~f~v~--~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      |+.|.++  ...|.|+..+|..  .+...+      .++.+|||+|||+|.+++.+|+.  ..++|+|+|+|+.|++.++
T Consensus        78 g~~~~~d~~~~~f~~~~~~er~--ri~~~~------~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~  147 (260)
T d2frna1          78 GIKYKLDVAKIMFSPANVKERV--RMAKVA------KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLV  147 (260)
T ss_dssp             TEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHH
T ss_pred             CeeEEeccccccEecCCHHHHH--HHHhhc------CCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHH
Confidence            5555555  4567888666543  233333      14678999999999999999986  3479999999999999999


Q ss_pred             HHHHhC
Q 026108          238 FNAQRI  243 (243)
Q Consensus       238 ~Na~~~  243 (243)
                      +|++.|
T Consensus       148 ~N~~~n  153 (260)
T d2frna1         148 ENIHLN  153 (260)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999865

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.74  E-value=7e-09  Score=84.43  Aligned_cols=45  Identities=27%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+++|||||||+|..++.++++   +.+|+|||+|+.+++.|+++++.
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~   74 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAA   74 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhh
Confidence            3468999999999999999986   37999999999999999988764

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.73  E-value=1.1e-08  Score=86.70  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=46.5

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ...++.+|||||||+|..+..+|+..|++++|+|+|+|+.+++.|++|+++
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~  120 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE  120 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh
Confidence            344678999999999999999999988889999999999999999999864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.72  E-value=1.2e-08  Score=88.07  Aligned_cols=48  Identities=19%  Similarity=0.151  Sum_probs=42.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|||+|.+++.+++.++.+.+|+|+|+|+.+++.|++|++.
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~   74 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL   74 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc
Confidence            467899999999999999998764468999999999999999999764

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.70  E-value=1.7e-08  Score=89.33  Aligned_cols=79  Identities=15%  Similarity=0.029  Sum_probs=56.6

Q ss_pred             cccccccCCCcccCC---ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108          159 RDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (243)
Q Consensus       159 ~~l~f~v~~~vliPR---p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~  235 (243)
                      .|+.|.++...+---   +|....-.++.+.+ ..  ..++.+|||||||||.+++.+|..   +++|++||+|+.|++.
T Consensus        96 ~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~-~~--~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~  169 (309)
T d2igta1          96 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAV-ET--ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGW  169 (309)
T ss_dssp             TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHH-HH--SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred             eEEEEEEeccCCCccccccchhHHHHHHHHHH-hh--ccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHH
Confidence            477777765443321   44444444444444 21  124678999999999999999874   4799999999999999


Q ss_pred             HHHHHHhC
Q 026108          236 AAFNAQRI  243 (243)
Q Consensus       236 Ar~Na~~~  243 (243)
                      |++|++.|
T Consensus       170 a~~N~~ln  177 (309)
T d2igta1         170 AKENQVLA  177 (309)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhhhhh
Confidence            99999753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.3e-08  Score=93.12  Aligned_cols=49  Identities=14%  Similarity=0.185  Sum_probs=43.4

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..++.++||||||+|.+.+.+|.++ +.++|+|||+|+.+++.|++|++.
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHH
Confidence            3456789999999999999999987 556999999999999999999864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.65  E-value=1.1e-08  Score=84.16  Aligned_cols=44  Identities=20%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||+|||+|..+..+++.   +++|+|+|+|+.+++.|++|..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~   85 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV   85 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccccc
Confidence            3568999999999999999875   4799999999999999999853

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.4e-08  Score=85.63  Aligned_cols=45  Identities=22%  Similarity=0.292  Sum_probs=41.0

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++.
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~  128 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY  128 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc
Confidence            46789999999999999999985 8899999999999999998864

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.7e-08  Score=83.47  Aligned_cols=46  Identities=20%  Similarity=0.109  Sum_probs=39.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +..+|||||||+|.++..++... . .+|+|||+|+.+|+.|+++++.
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~ak~~~~~  105 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPL-F-REVDMVDITEDFLVQAKTYLGE  105 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-C-SEEEEEESCHHHHHHHHHHTGG
T ss_pred             CCCEEEEeccCCCHhhHHHHHhc-C-CEEEEeecCHHHhhcccccccc
Confidence            45689999999999999887653 3 5999999999999999998753

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.61  E-value=2.3e-08  Score=84.33  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=39.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++.+|||||||+|..+..+++.  ...+|+|||+|+++++.|++++.
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~   68 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRAR   68 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHH
T ss_pred             CcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHH
Confidence            4578999999999999999886  23689999999999999998764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.59  E-value=1.4e-07  Score=81.72  Aligned_cols=48  Identities=15%  Similarity=0.068  Sum_probs=42.6

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..++.+|||||||.|.+++.++++.  +.+|+|+|+|++.++.|++++++
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~   97 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLAS   97 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHh
Confidence            4457899999999999999999885  47999999999999999998764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.8e-08  Score=82.22  Aligned_cols=46  Identities=15%  Similarity=0.080  Sum_probs=40.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++++|||+|||+|..+..+++.  ...+|+|||+|+.+++.|+++++.
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGG
T ss_pred             CCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhh
Confidence            4578999999999999999985  236899999999999999999764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.55  E-value=3.1e-08  Score=82.19  Aligned_cols=44  Identities=20%  Similarity=0.204  Sum_probs=38.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ++++|||||||+|.++..+++.   +.+|+|||+|+++++.|+++..
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~   63 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK   63 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc
Confidence            4568999999999999999875   3689999999999999998753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.1e-08  Score=83.70  Aligned_cols=47  Identities=17%  Similarity=0.122  Sum_probs=40.0

Q ss_pred             CCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       194 ~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .++.+|||||||+|.+++.++..  ...+|+|+|+|+.+++.|++|++.
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhh
Confidence            35678999999999998888765  235899999999999999999864

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.50  E-value=9.3e-08  Score=79.46  Aligned_cols=45  Identities=20%  Similarity=0.320  Sum_probs=41.8

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..|||||||+|...+.+|+.. |+..++|||+++.++..|.+++++
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~   75 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKD   75 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHH
Confidence            469999999999999999985 999999999999999999998865

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=5.5e-08  Score=85.87  Aligned_cols=46  Identities=26%  Similarity=0.141  Sum_probs=41.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++++|||+|||+|.+++.+|..   .++|+++|+|+.+++.|++|+++|
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~n  190 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLN  190 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHc
Confidence            4678999999999999999864   379999999999999999999875

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.6e-07  Score=82.90  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=47.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+..+++.+    ...++.+|||||||+|.+++.+|+.. +..+|+|||+|+.+++.|+++.+.
T Consensus       139 ~~~~~~~~~----~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~  197 (328)
T d1nw3a_         139 LVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDRE  197 (328)
T ss_dssp             HHHHHHHHS----CCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc----CCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH
Confidence            445555544    22346789999999999999999986 556899999999999999998653

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.48  E-value=1.9e-07  Score=78.35  Aligned_cols=76  Identities=22%  Similarity=0.281  Sum_probs=58.4

Q ss_pred             ccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 026108          158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA  237 (243)
Q Consensus       158 f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar  237 (243)
                      |.+..+.++.+..+..|..   +..+++.+    ...++.+|||+|||||..+..+|+..  +.+|+++|++++.++.|+
T Consensus        48 Y~D~~l~i~~g~~is~P~~---~a~ml~~L----~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~  118 (215)
T d1jg1a_          48 HIDEPLPIPAGQTVSAPHM---VAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAK  118 (215)
T ss_dssp             TSSSCEECSTTCEECCHHH---HHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHH
T ss_pred             cccCCcccchhhhhhhhhh---HHHHHHhh----ccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHH
Confidence            3456666777777777654   33344444    12356789999999999999999875  468999999999999999


Q ss_pred             HHHHh
Q 026108          238 FNAQR  242 (243)
Q Consensus       238 ~Na~~  242 (243)
                      +|+++
T Consensus       119 ~~l~~  123 (215)
T d1jg1a_         119 RNLER  123 (215)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.48  E-value=8.5e-08  Score=83.89  Aligned_cols=70  Identities=16%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~----p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.||+.++++++.+..++ .   ..++.+|||.|||+|.+.+.+..++.    ...+++|+|+++.++++|+.|+..
T Consensus        95 ~~TP~~i~~~m~~l~~~~~-~---~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~  168 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVI-Q---KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL  168 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHH-T---TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             EECcHHHHHHHHHHHHHHh-C---CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH
Confidence            4679999999998877766 2   22346799999999999999876541    234899999999999999999753

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.47  E-value=8.8e-08  Score=84.59  Aligned_cols=47  Identities=30%  Similarity=0.278  Sum_probs=42.1

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|.+++.+|+. |+ .+|+++|+|+.+++.|++|++.|
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~-ga-~~V~~vD~s~~al~~a~~N~~~n  191 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIA-GA-DEVIGIDKSPRAIETAKENAKLN  191 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCeeecccCcccchhhhhhhc-CC-cEEEeecCCHHHHHHHHHHHHHc
Confidence            4678999999999999999986 33 59999999999999999999875

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=5.8e-07  Score=78.16  Aligned_cols=49  Identities=14%  Similarity=0.098  Sum_probs=43.4

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ...++.+|||||||.|..++.+|++.  +++|+|+++|++-++.|++.+++
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~  107 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVAN  107 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHh
Confidence            34467899999999999999999986  48999999999999999998754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.44  E-value=1.7e-07  Score=79.15  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             cccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       163 f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.+.++..+..|....   .+++.+    ...++.+|||+|||||.++..||+..   .+|+++|+++++++.|++|...
T Consensus        45 l~i~~g~~~~~p~~~a---~ml~~L----~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~  114 (224)
T d1vbfa_          45 LPILPGINTTALNLGI---FMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY  114 (224)
T ss_dssp             EEEETTEEECCHHHHH---HHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT
T ss_pred             cccCCCCceehhhhHH---HHHHHh----hhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc
Confidence            3344555565554422   234444    22356789999999999999999863   6999999999999999999764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=6.8e-07  Score=77.93  Aligned_cols=49  Identities=14%  Similarity=0.047  Sum_probs=43.1

Q ss_pred             CCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       192 ~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ...++.+|||||||.|.+++.+|+++  +++|+|+++|++.++.|++.++.
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~  106 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDE  106 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHh
Confidence            34467899999999999999999887  47999999999999999988764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=2.3e-07  Score=76.45  Aligned_cols=59  Identities=20%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |.+.+++++ .   ..++..++|++||+|-++..++..+ |+++|+|+|.+++|++.|+++.+.
T Consensus        11 ll~evi~~l-~---~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~   69 (192)
T d1m6ya2          11 MVREVIEFL-K---PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKE   69 (192)
T ss_dssp             THHHHHHHH-C---CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGG
T ss_pred             HHHHHHHhh-C---CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcc
Confidence            556667777 2   2356789999999999999999987 889999999999999999998764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.5e-07  Score=80.45  Aligned_cols=43  Identities=21%  Similarity=0.421  Sum_probs=35.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++++|||||||+|.+++.+|+. |+ .+|+|+|.|+.++..++.+
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~-Ga-~~V~aid~s~~~~~a~~~~   77 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSEILYQAMDII   77 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESSTHHHHHHHHH
T ss_pred             CcCEEEEECCCCCHHHHHHHHc-CC-CEEEEEeCHHHHHHHHHHH
Confidence            5678999999999999999986 44 5999999999887544433

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.39  E-value=3.4e-07  Score=77.80  Aligned_cols=45  Identities=16%  Similarity=0.067  Sum_probs=39.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ...+|||+|||+|.++..++... . .+|++||+|+.+++.|+++..
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~-~-~~v~~vD~s~~~l~~a~~~~~  137 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKL-Y-ATTDLLEPVKHMLEEAKRELA  137 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-C-SEEEEEESCHHHHHHHHHHTT
T ss_pred             CCCeEEEecccCChhhHHHHhhc-C-ceEEEEcCCHHHHHhhhcccc
Confidence            45789999999999999888764 3 589999999999999998864

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.39  E-value=3e-07  Score=81.13  Aligned_cols=47  Identities=17%  Similarity=0.104  Sum_probs=41.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|||+|.+++.+|.. |. .+|++||+|+.+++.|++|++.|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~-ga-~~V~~vD~s~~a~~~a~~N~~~n  190 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMG-GA-MATTSVDLAKRSRALSLAHFEAN  190 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT-TB-SEEEEEESCTTHHHHHHHHHHHT
T ss_pred             CCCceeecCCCCcHHHHHHHhC-CC-ceEEEecCCHHHHHHHHHHHHHh
Confidence            4678999999999999998874 33 58999999999999999999865

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.37  E-value=2e-07  Score=78.45  Aligned_cols=80  Identities=19%  Similarity=0.266  Sum_probs=55.9

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC-----CcEEEEEeCCHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----KGSIIAVDLNPL  231 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p-----~a~V~avDiS~~  231 (243)
                      .|.+..+.+..+..+-.|..   .-.+++.+ . ....++.+|||+|||||+.+..+|+..++     ..+|+++|++++
T Consensus        47 aY~D~~lpi~~~~~is~P~~---~a~~l~~L-~-~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~  121 (223)
T d1r18a_          47 PYMDAPQPIGGGVTISAPHM---HAFALEYL-R-DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE  121 (223)
T ss_dssp             TTBSSCEEEETTEEECCHHH---HHHHHHHT-T-TTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH
T ss_pred             ccCCCCccccCCceeehhhh---HHHHHHHH-h-hccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHH
Confidence            34556666666666655543   22334333 1 11225678999999999999999987532     248999999999


Q ss_pred             HHHHHHHHHH
Q 026108          232 AAAVAAFNAQ  241 (243)
Q Consensus       232 AL~~Ar~Na~  241 (243)
                      .++.|++|..
T Consensus       122 l~~~a~~~l~  131 (223)
T d1r18a_         122 LVRRSKANLN  131 (223)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            9999999975

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.34  E-value=3.2e-07  Score=76.07  Aligned_cols=45  Identities=22%  Similarity=0.330  Sum_probs=41.2

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..|||||||+|...+.+|+.. |+..++|+|+++.++..|.+++++
T Consensus        33 plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~   77 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLE   77 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhh
Confidence            469999999999999999986 999999999999999999887754

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=2.8e-07  Score=80.55  Aligned_cols=45  Identities=20%  Similarity=0.438  Sum_probs=36.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++++|||||||+|.+++.+|+. |+ .+|+|+|.|+.+ ..|++|++.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-Ga-~~V~avd~s~~~-~~a~~~~~~   77 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-GA-RKVIGIECSSIS-DYAVKIVKA   77 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECSTTH-HHHHHHHHH
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-CC-CEEEEEcCcHHH-hhhhhHHHH
Confidence            4578999999999999999985 44 589999999754 677777654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.7e-07  Score=75.88  Aligned_cols=46  Identities=17%  Similarity=0.091  Sum_probs=37.7

Q ss_pred             CcEEEeccCCcHHHHHHHHHh-----CCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVL-----GSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~-----~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+|||+|||+|.++..++..+     +....++|||+|+.+++.|+++++.
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~   92 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK   92 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTT
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhh
Confidence            479999999999988887653     1134789999999999999998753

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=5e-07  Score=79.23  Aligned_cols=45  Identities=24%  Similarity=0.426  Sum_probs=37.5

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++++|||||||+|.+++.+|+. |+ .+|+|+|.|+ +++.|+++++.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~-Ga-~~V~avd~s~-~~~~a~~~~~~   82 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKH-GA-KHVIGVDMSS-IIEMAKELVEL   82 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CC-SEEEEEESST-HHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCCHHHHHHHHh-CC-CEEEEEeCCH-HHHHHHHHHHH
Confidence            4578999999999999999885 43 5999999997 56788887764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.24  E-value=5.9e-07  Score=75.76  Aligned_cols=45  Identities=22%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .++|||+|||+|.+++.+++++ |+.+++++|+ +++++.|++++..
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~  125 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKD  125 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHH
Confidence            4689999999999999999986 8999999998 6789999998764

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=1.3e-06  Score=72.69  Aligned_cols=62  Identities=21%  Similarity=0.292  Sum_probs=50.9

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |+.-.+...++...       ++++|||+|||+|..++.+|..++++++|+++|++++.++.|++|+++
T Consensus        42 ~~~G~lL~~lv~~~-------kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~  103 (214)
T d2cl5a1          42 DAKGQIMDAVIREY-------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF  103 (214)
T ss_dssp             HHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-------CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHH
Confidence            55555555555544       346899999999999999999875678999999999999999999864

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.16  E-value=1.6e-06  Score=73.50  Aligned_cols=45  Identities=22%  Similarity=0.126  Sum_probs=40.7

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ..+|||+|||+|.++..+++++ |+.+++++|+ ++.++.|+++++.
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~  126 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFAD  126 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhh
Confidence            3579999999999999999996 9999999998 7899999998764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.2e-06  Score=74.48  Aligned_cols=47  Identities=15%  Similarity=0.072  Sum_probs=38.9

Q ss_pred             CCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       193 ~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      ..++.++||+|||+|.+.+..+...  ..+|+|+|+|+.+++.|+++++
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~   98 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQ   98 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHh
Confidence            3457799999999999887666553  2589999999999999998864

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.5e-06  Score=70.43  Aligned_cols=62  Identities=16%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |+.-.+...+....       +.++||++|||+|.-++.+|..+.++++|+.+|++++..+.|++|.++
T Consensus        45 ~~~g~lL~~L~~~~-------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~  106 (219)
T d2avda1          45 CEQAQLLANLARLI-------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ  106 (219)
T ss_dssp             HHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc-------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHh
Confidence            44555555555543       356899999999999999999875578999999999999999999874

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=1.3e-06  Score=70.49  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=30.9

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +.+|||+|||+|.++..+       .+++|||+|+.+++.|+++
T Consensus        37 ~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~~   73 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARKR   73 (208)
T ss_dssp             SSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHHT
T ss_pred             CCeEEEECCCCccccccc-------ceEEEEeCChhhccccccc
Confidence            357999999999876544       3568999999999999875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.94  E-value=9.4e-07  Score=71.76  Aligned_cols=62  Identities=19%  Similarity=0.329  Sum_probs=45.3

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      |+-|+..++++++.    + .   ..++.+|||.|||+|.+...+.+..+....++|+|+++.+++++++
T Consensus         1 v~TP~~i~~~m~~l----~-~---~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~   62 (223)
T d2ih2a1           1 VETPPEVVDFMVSL----A-E---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW   62 (223)
T ss_dssp             CCCCHHHHHHHHHH----C-C---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT
T ss_pred             CCCCHHHHHHHHHh----c-C---CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc
Confidence            45566655555553    3 1   1245789999999999998888776556789999999988766554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.92  E-value=1.3e-05  Score=67.31  Aligned_cols=62  Identities=13%  Similarity=0.234  Sum_probs=51.6

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |+.-.+...+....       +.++||++|||+|.-++.+|..++++++|+.+|++++..+.|++|.++
T Consensus        45 ~~~g~~L~~L~~~~-------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~  106 (227)
T d1susa1          45 ADEGQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK  106 (227)
T ss_dssp             HHHHHHHHHHHHHH-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHH
Confidence            44545566666554       356899999999999999999886679999999999999999999875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.83  E-value=2e-05  Score=66.42  Aligned_cols=56  Identities=9%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +++.+++.+    ...++.+|||+|||.|+++..|++.   ..+|+|||+++..++..+++..
T Consensus         9 i~~~iv~~~----~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~   64 (235)
T d1qama_           9 NIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLV   64 (235)
T ss_dssp             HHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHhc----CCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhh
Confidence            345555544    2235678999999999999999986   2699999999999999988754

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.75  E-value=1.6e-05  Score=71.44  Aligned_cols=47  Identities=15%  Similarity=0.022  Sum_probs=42.2

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      +.+|||..||||..++..|++. +..+|+++|+|++|++.+++|++.|
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN   92 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLN   92 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhc
Confidence            4689999999999999999986 4569999999999999999999753

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.46  E-value=4.2e-06  Score=71.17  Aligned_cols=63  Identities=14%  Similarity=0.266  Sum_probs=46.9

Q ss_pred             ccccccCCCcccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       160 ~l~f~v~~~vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      |..|.+++.+          ++.+++.+    ...++.+|||+|||+|+++..|++.   +.+|+|||+++..++.++++
T Consensus         8 GQnFL~d~~i----------i~kIv~~~----~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~   70 (245)
T d1yuba_           8 SQNFLTSEKV----------LNQIIKQL----NLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEK   70 (245)
T ss_dssp             CCCBCCCTTT----------HHHHHHHC----CCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCT
T ss_pred             CCcccCCHHH----------HHHHHHhc----CCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhh
Confidence            6777777664          44555544    1224568999999999999999986   26999999999887766544

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00022  Score=58.76  Aligned_cols=45  Identities=18%  Similarity=0.197  Sum_probs=38.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++.+|+|+|||.|.=|+.+|-.+ |+.+|+.+|.+..-+...++=+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~  109 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQ  109 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHH
T ss_pred             cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHH
Confidence            35689999999999999999875 9999999999998887766543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00043  Score=59.47  Aligned_cols=56  Identities=16%  Similarity=0.300  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      +++.+.+.+    ...++..||++|+|.|+++..|++.   +.+|++||+++..++..+++..
T Consensus         9 i~~kIv~~~----~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~   64 (278)
T d1zq9a1           9 IINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQ   64 (278)
T ss_dssp             HHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHT
T ss_pred             HHHHHHHHh----CCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHh
Confidence            445555544    2224568999999999999999986   2699999999999999988754

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00023  Score=60.33  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=41.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +++.+++.+ .   ..++..||++|||.|+++..|++.   ..+|+|||+++..++..+++
T Consensus         9 ~~~~Iv~~~-~---~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~   62 (252)
T d1qyra_           9 VIDSIVSAI-N---PQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTH   62 (252)
T ss_dssp             HHHHHHHHH-C---CCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTC
T ss_pred             HHHHHHHhc-C---CCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHH
Confidence            455566555 1   224567999999999999999975   36999999999999887653

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00069  Score=58.18  Aligned_cols=49  Identities=24%  Similarity=0.262  Sum_probs=43.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|+|.|-=++.+|..++.+..|+|+|+++.-++..++|++++
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~  142 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA  142 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc
Confidence            4678999999999999999887766789999999999999999999864

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.99  E-value=0.0011  Score=53.83  Aligned_cols=58  Identities=21%  Similarity=0.230  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       177 ElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      +.|++.++... .    .++..|||-.+|||..++++.+ +  +-+.+|+|++++.+++|++++++
T Consensus       199 ~~L~~~lI~~~-s----~~gd~VlDpF~GSGTT~~aa~~-~--~R~~ig~El~~~y~~~a~~Rl~~  256 (256)
T d1g60a_         199 RDLIERIIRAS-S----NPNDLVLDCFMGSGTTAIVAKK-L--GRNFIGCDMNAEYVNQANFVLNQ  256 (256)
T ss_dssp             HHHHHHHHHHH-C----CTTCEEEESSCTTCHHHHHHHH-T--TCEEEEEESCHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHh-C----CCCCEEEECCCCchHHHHHHHH-c--CCeEEEEeCCHHHHHHHHHHHcC
Confidence            45677777665 2    2456899999999999987766 3  47999999999999999998764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.94  E-value=0.00066  Score=56.80  Aligned_cols=63  Identities=21%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             cCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026108          171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ  241 (243)
Q Consensus       171 iPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~  241 (243)
                      -|-+-.+.|++.++... .    .++..|||-.+|||..++++.. +  +-+.+|+|++++++++|++.+.
T Consensus       231 hpt~kP~~L~~rlI~~~-s----~~gdiVlDpF~GSGTT~~AA~~-l--gR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         231 HPARFPAKLPEFFIRML-T----EPDDLVVDIFGGSNTTGLVAER-E--SRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             CSSCCCTHHHHHHHHHH-C----CTTCEEEETTCTTCHHHHHHHH-T--TCEEEEEESCHHHHHHHHGGGS
T ss_pred             CCCcCchHHHHHhhhhc-c----cCCCEEEecCCCCcHHHHHHHH-c--CCcEEEEeCCHHHHHHHHHHHH
Confidence            34444456777777765 2    2467899999999999987765 4  4799999999999999987654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.92  E-value=0.00093  Score=53.72  Aligned_cols=45  Identities=22%  Similarity=0.234  Sum_probs=33.8

Q ss_pred             CCCcEEEeccCCcH----HHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGA----IAIGIARVLG---SKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~----iai~LA~~~~---p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      +..||++.|||||-    +++.+.....   ...+|+|+|||+.+|+.|++.
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            34689999999998    4555544321   134799999999999999864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.0012  Score=53.12  Aligned_cols=53  Identities=30%  Similarity=0.348  Sum_probs=42.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       179 Lv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      +++.+++++    ...+++.++|..+|.|-.+..+...   +.+|+|+|++++|++.|++
T Consensus         6 ll~Evl~~l----~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~   58 (182)
T d1wg8a2           6 LYQEALDLL----AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG   58 (182)
T ss_dssp             THHHHHHHH----TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhc----CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhh
Confidence            456666766    2235678999999999999888774   4799999999999999876

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.76  E-value=0.002  Score=52.91  Aligned_cols=63  Identities=16%  Similarity=0.130  Sum_probs=48.5

Q ss_pred             CCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       172 PRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      |-+--+.|++.++... .    .++..|||-.+|||.-++++...   +-+.+|+|++++.+++|+++++.
T Consensus       189 p~~kP~~L~~~~I~~~-s----~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         189 PTQKPAAVIERLVRAL-S----HPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             TTCCCHHHHHHHHHHH-S----CTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHhh-c----CCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHH
Confidence            4333345777777655 1    24668999999999999987764   46999999999999999988764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.70  E-value=0.00076  Score=56.12  Aligned_cols=34  Identities=29%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ..+|+|+|||+|.+++.+++++ |+.+++..|..+
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~  115 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH  115 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH
Confidence            3579999999999999999997 999999999854

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.58  E-value=0.00094  Score=55.89  Aligned_cols=37  Identities=30%  Similarity=0.194  Sum_probs=32.2

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      ..+|||+|||+|.+++.+++++ |+.+++..|. |+.++
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~  118 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIE  118 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT
T ss_pred             CcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhh
Confidence            4689999999999999999997 9999999998 44443

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.55  E-value=0.0024  Score=56.98  Aligned_cols=66  Identities=24%  Similarity=0.352  Sum_probs=48.0

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS------------KGSIIAVDLNPLAAAVA  236 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p------------~a~V~avDiS~~AL~~A  236 (243)
                      .+.|+...+++++    .+ .   ...+.+|+|-+||||.+.+.+.++...            ...++|+|+++.+..+|
T Consensus       144 f~TP~~Iv~~mv~----ll-~---~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la  215 (425)
T d2okca1         144 YFTPRPLIQAMVD----CI-N---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  215 (425)
T ss_dssp             GCCCHHHHHHHHH----HH-C---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             hccchhhhHhhhe----ec-c---CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHH
Confidence            3557765555554    34 1   123567999999999999998876411            12599999999999999


Q ss_pred             HHHHHh
Q 026108          237 AFNAQR  242 (243)
Q Consensus       237 r~Na~~  242 (243)
                      +.|...
T Consensus       216 ~~n~~l  221 (425)
T d2okca1         216 SMNLYL  221 (425)
T ss_dssp             HHHHHH
T ss_pred             Hhhhhh
Confidence            999753

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=0.0029  Score=54.79  Aligned_cols=45  Identities=18%  Similarity=0.152  Sum_probs=39.6

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .+++||.||.|.|..+..+.+.. +..+|++||++++.+++|+++.
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f  121 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHM  121 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHC
T ss_pred             CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcC
Confidence            35689999999999999988763 6789999999999999999864

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.25  E-value=0.006  Score=50.99  Aligned_cols=42  Identities=17%  Similarity=0.121  Sum_probs=35.9

Q ss_pred             CCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ..+|+|+|||.|.=|+.+|-.+ |+.+|+.+|-+..=++.-++
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~  112 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEK  112 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHH
T ss_pred             CCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHH
Confidence            4689999999999999999876 89999999999876655443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.22  E-value=0.002  Score=53.74  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV  235 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~  235 (243)
                      .+|+|+|+|+|.+++.+++++ |+.+++..|. ++.++.
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~  118 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVEN  118 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTT
T ss_pred             eEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHh
Confidence            579999999999999999997 9999999998 445443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.18  E-value=0.0046  Score=52.48  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=37.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++.+||-||.|.|..+..+.+.  +..+|++|||+++.+++|++-
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~  114 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDL  114 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHH
T ss_pred             CCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHh
Confidence            3568999999999999888774  446999999999999999864

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0053  Score=56.31  Aligned_cols=66  Identities=24%  Similarity=0.357  Sum_probs=48.2

Q ss_pred             cccCCccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCC-----------------CcEEEEEeCCHH
Q 026108          169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----------------KGSIIAVDLNPL  231 (243)
Q Consensus       169 vliPRp~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p-----------------~a~V~avDiS~~  231 (243)
                      .+.||...+++++.    + .   +.++.+|+|-+||||.+.+.+.+.+..                 ...++|+|+++.
T Consensus       146 fyTP~~Iv~~mv~l----l-~---~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~  217 (524)
T d2ar0a1         146 YFTPRPLIKTIIHL----L-K---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  217 (524)
T ss_dssp             CCCCHHHHHHHHHH----H-C---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             hccccchhHhhhhc----c-c---CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHH
Confidence            45687766665553    3 1   123567999999999999988775411                 125899999999


Q ss_pred             HHHHHHHHHHh
Q 026108          232 AAAVAAFNAQR  242 (243)
Q Consensus       232 AL~~Ar~Na~~  242 (243)
                      +..+|+.|+-.
T Consensus       218 ~~~la~~nl~l  228 (524)
T d2ar0a1         218 TRRLALMNCLL  228 (524)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999999753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0053  Score=52.18  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=42.8

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRI  243 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~~  243 (243)
                      ++.+|||+|+|.|-=++.+|... .++.|+|+|+++.-++..++|++++
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~  149 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRL  149 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHT
T ss_pred             ccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcc
Confidence            56789999999999999999864 6789999999999999999998764

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.016  Score=50.02  Aligned_cols=72  Identities=8%  Similarity=-0.043  Sum_probs=49.0

Q ss_pred             cccccccccCCCcccCCccHHHHHHHHHHHhh--hcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026108          157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLV--RDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA  234 (243)
Q Consensus       157 ~f~~l~f~v~~~vliPRp~TElLv~~v~~~l~--~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~  234 (243)
                      .++|..|.+++.          +++.+++.+.  .......+..|||+|.|.|.++..|....++ .+|+++|+++..++
T Consensus        13 k~~GQnfL~d~~----------i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~   81 (322)
T d1i4wa_          13 FFYGFKYLWNPT----------VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYK   81 (322)
T ss_dssp             CGGGCCCBCCHH----------HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHH
T ss_pred             hhccccccCCHH----------HHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHH
Confidence            345667766654          3444444331  1111223567999999999999999876423 59999999999988


Q ss_pred             HHHHH
Q 026108          235 VAAFN  239 (243)
Q Consensus       235 ~Ar~N  239 (243)
                      .-++.
T Consensus        82 ~L~~~   86 (322)
T d1i4wa_          82 FLNAK   86 (322)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87664

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.82  E-value=0.0079  Score=51.85  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=42.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++.+|||+|+|.|-=+..++...+.++.|+++|+++.-+...++|+++
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r  163 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR  163 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHH
Confidence            567899999999999888888775678999999999999999999875

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.34  E-value=0.015  Score=49.82  Aligned_cols=45  Identities=16%  Similarity=0.098  Sum_probs=39.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .+++||=||.|.|.++-.+++.. +..+|++|||+++.+++|++..
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~  133 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYL  133 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHC
T ss_pred             CCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHH
Confidence            35689999999999999998863 6679999999999999998854

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.07  E-value=0.022  Score=48.11  Aligned_cols=45  Identities=16%  Similarity=0.109  Sum_probs=39.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ++++||-||-|.|.++-.+.+.. +..+|+.|||+++.+++|++..
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~  119 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFL  119 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHC
T ss_pred             CcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhC
Confidence            35689999999999999998863 5679999999999999998864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.60  E-value=0.031  Score=48.30  Aligned_cols=59  Identities=15%  Similarity=0.122  Sum_probs=45.1

Q ss_pred             cHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       175 ~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      -.|.++.-.+-..    +  .+++||-||-|.|.++-.+.+.. +..+|+.|||+++.+++|++..
T Consensus        92 YhE~l~h~pl~~~----~--~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~  150 (312)
T d2b2ca1          92 YQEMLAHLPMFAH----P--DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFL  150 (312)
T ss_dssp             HHHHHHHHHHHHS----S--SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHC
T ss_pred             HHHHhhhHHHhcC----C--CCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhc
Confidence            3566655443221    1  35689999999999999998863 5579999999999999999854

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=94.57  E-value=0.027  Score=47.16  Aligned_cols=43  Identities=28%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             CcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       197 ~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      .+|||+.+|.|..+..+|..   +++|+++|.++....+.+.|.++
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r  132 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLAR  132 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHH
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHH
Confidence            47999999999999999985   37999999999887777766543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=94.53  E-value=0.049  Score=44.87  Aligned_cols=52  Identities=21%  Similarity=0.213  Sum_probs=36.8

Q ss_pred             ccHHHHHHHHHHHhhhcCCCCCCCcEEEeccCCcHHHHHHHHHh---CCCcEEEEEeCCHHH
Q 026108          174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLA  232 (243)
Q Consensus       174 p~TElLv~~v~~~l~~~~~~~~~~rVLDLGtGSG~iai~LA~~~---~p~a~V~avDiS~~A  232 (243)
                      |..-.+...++..+       ++++||++|++.|.-++.+|..+   +++++|+++|+++..
T Consensus        66 p~d~~~~~eli~~~-------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~  120 (232)
T d2bm8a1          66 PDTQAVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR  120 (232)
T ss_dssp             HHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT
T ss_pred             HHHHHHHHHHHHHh-------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhh
Confidence            44444555555544       35679999999999888777533   467899999997643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.022  Score=45.18  Aligned_cols=36  Identities=39%  Similarity=0.521  Sum_probs=31.4

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP  230 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~  230 (243)
                      ++.+||||||+.|.....+++..+....|+++|+.+
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            456899999999999999998776778999999865

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.047  Score=46.28  Aligned_cols=45  Identities=13%  Similarity=0.152  Sum_probs=39.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      .+++||-||-|.|.++-.+.+.. +..+|+.|||+++.+++|++-.
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~  122 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFL  122 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHC
T ss_pred             CcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhc
Confidence            45789999999999999998863 5679999999999999998753

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.17  E-value=0.057  Score=45.84  Aligned_cols=45  Identities=18%  Similarity=0.184  Sum_probs=39.2

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      +.++||=||-|.|.++-.+.+.. +..+|++|||+++.+++|++..
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f  124 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFF  124 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHC
T ss_pred             CCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhc
Confidence            45689999999999999998863 5579999999999999998843

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.60  E-value=0.0072  Score=50.83  Aligned_cols=21  Identities=19%  Similarity=0.069  Sum_probs=18.0

Q ss_pred             CCcEEEeccCCcHHHHHHHHH
Q 026108          196 DGFWVDLGTGSGAIAIGIARV  216 (243)
Q Consensus       196 ~~rVLDLGtGSG~iai~LA~~  216 (243)
                      +..++|-+||||+|.|.+|..
T Consensus        51 ~~~LlDPmCGSGTilIEAAli   71 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLL   71 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHH
Confidence            346999999999999988873

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.58  E-value=0.058  Score=42.75  Aligned_cols=45  Identities=31%  Similarity=0.287  Sum_probs=37.4

Q ss_pred             CCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      .++.+||-+|||. |.+++.+|+.. ...+|+++|.+++-++.|++.
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhc
Confidence            3567899999997 77788888876 346999999999999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.26  E-value=0.036  Score=42.53  Aligned_cols=44  Identities=11%  Similarity=0.004  Sum_probs=37.1

Q ss_pred             CCCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       194 ~~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      .++.+||-+|+| .|.+++.+|+.+  +++|+++|.|++-++.|++.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhcc
Confidence            356789999998 778888888876  58999999999999998874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.79  E-value=0.11  Score=39.37  Aligned_cols=43  Identities=16%  Similarity=0.191  Sum_probs=35.8

Q ss_pred             CCCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       194 ~~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      .++.+||=+|+| .|.+++.+|+..  +++|+++|.+++-++.|++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH
Confidence            356789999988 677788888875  5899999999999999986

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.72  E-value=0.1  Score=40.25  Aligned_cols=45  Identities=27%  Similarity=0.319  Sum_probs=36.5

Q ss_pred             CCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       194 ~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      .++.+||=+|+|. |.+++.+|+.+|. .+|+++|.+++-++.|++.
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCccchhheeccccccc-ccccccccccccccccccc
Confidence            3567899999884 7788889988632 3899999999999999763

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=89.03  E-value=0.62  Score=39.96  Aligned_cols=46  Identities=20%  Similarity=0.280  Sum_probs=33.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHH
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLG------SKGSIIAVDLNPLAAAVAAFNA  240 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~------p~a~V~avDiS~~AL~~Ar~Na  240 (243)
                      ....|+++|.|+|.++.-+.+.+.      ...+++.+|.|+..-+.-+++.
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l  130 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  130 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence            345799999999999877766431      2357999999997666555543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=88.53  E-value=0.19  Score=42.10  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=27.3

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhCCCcEEEEEeC
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL  228 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~p~a~V~avDi  228 (243)
                      +..+|+|||||.|-.+..++... +...|.|+|+
T Consensus        66 ~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~i   98 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTK   98 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTST-TEEEEEEECC
T ss_pred             CCCeEEEecCCCChHHHHHHhhc-CCCceeEEEe
Confidence            45689999999999999998863 5568888887

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.25  E-value=0.36  Score=37.05  Aligned_cols=43  Identities=33%  Similarity=0.527  Sum_probs=35.2

Q ss_pred             CCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       195 ~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ++.+||=+|||. |..++.+|+.+|. .+|+++|.+++-++.|++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHh
Confidence            466788899986 8888889987632 479999999999998876

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.12  E-value=0.52  Score=41.33  Aligned_cols=48  Identities=15%  Similarity=0.138  Sum_probs=39.7

Q ss_pred             CCCcEEEeccCCcHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHh
Q 026108          195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQR  242 (243)
Q Consensus       195 ~~~rVLDLGtGSG~iai~LA~~~~-p~a~V~avDiS~~AL~~Ar~Na~~  242 (243)
                      ++..++|+|+-.|..++.+++... ...+|+++|.++...+..++|++.
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            356799999999998887776542 236999999999999999999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.07  E-value=0.3  Score=37.60  Aligned_cols=45  Identities=27%  Similarity=0.246  Sum_probs=37.6

Q ss_pred             CCCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       193 ~~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      ..++.+||=+|||. |.+++.+|+.+|. ..|+++|.+++-++.|++
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHH
Confidence            34567899999997 8899999998742 489999999999999887

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.51  E-value=0.6  Score=35.76  Aligned_cols=46  Identities=26%  Similarity=0.185  Sum_probs=36.2

Q ss_pred             CCCCCcEEEeccCC-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       193 ~~~~~rVLDLGtGS-G~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ..++..|+=.|+|. |..++.+++..+ ..+|+++|.+++-++.|++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc
Confidence            33567899999984 566777788752 36999999999999999874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.28  E-value=0.7  Score=34.86  Aligned_cols=43  Identities=19%  Similarity=0.086  Sum_probs=35.1

Q ss_pred             CCCCcEEEecc--CCcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026108          194 LRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF  238 (243)
Q Consensus       194 ~~~~rVLDLGt--GSG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~  238 (243)
                      .++.+||=.|+  |.|.+++.+|+..  +++|++++.+++.++.+++
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc
Confidence            35678999985  4677788889875  6899999999998888875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.96  E-value=1.1  Score=33.18  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             CCCcEEEeccC-CcHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026108          195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       195 ~~~rVLDLGtG-SG~iai~LA~~~~p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ++.+|+=+|+| -|.+++.+|+..  +.+|+++|.+++-++.+++.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT
T ss_pred             CCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhcc
Confidence            45678878886 356677777775  58999999999999998763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.88  E-value=0.79  Score=33.06  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=28.8

Q ss_pred             cCCcHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHH
Q 026108          204 TGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFN  239 (243)
Q Consensus       204 tGSG~iai~LA~~~~-p~a~V~avDiS~~AL~~Ar~N  239 (243)
                      ||.|.+|..+++.+. .+.+|+.+|.+++.++.+++.
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~   42 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE   42 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh
Confidence            567999999998652 357999999999999876653